BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780416|ref|YP_003064829.1| putative ferredoxin protein
[Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|225628328|ref|ZP_03786362.1| Ferredoxin-2 [Brucella ceti str. Cudo]
 gi|225616174|gb|EEH13222.1| Ferredoxin-2 [Brucella ceti str. Cudo]
          Length = 138

 Score =  143 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 27  MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 86

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 87  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLEQYFSPEAGSGD 138


>gi|110635706|ref|YP_675914.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110286690|gb|ABG64749.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 138

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 27  MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 86

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N++YA +WPNIT KKE    A   DG+++K+EKYFSP PG  +
Sbjct: 87  PGLEKWLQVNADYAEKWPNITAKKEPPADAKDWDGIEEKFEKYFSPEPGTGD 138


>gi|92119089|ref|YP_578818.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801983|gb|ABE64358.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 133

 Score =  140 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AI  D+E
Sbjct: 22  MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIFADSE 81

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WLK+N+EYA  WPNIT K+++   A   DGV  K E+YFS NPG  +
Sbjct: 82  PGLENWLKLNAEYAAVWPNITIKRDAPADAKAFDGVADKLEQYFSANPGTGD 133


>gi|254473211|ref|ZP_05086609.1| ferredoxin II [Pseudovibrio sp. JE062]
 gi|211957932|gb|EEA93134.1| ferredoxin II [Pseudovibrio sp. JE062]
          Length = 112

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE W+++N+EYA +WPN+T KK+ LP AA+ DGVK+K EKYFS  PG  +
Sbjct: 61  PGLEKWVELNAEYAEKWPNLTVKKDQLPEAAEFDGVKEKLEKYFSEKPGTGD 112


>gi|319409357|emb|CBI83001.1| ferredoxin II [Bartonella schoenbuchensis R1]
          Length = 112

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 85/111 (76%), Positives = 94/111 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N EYAT+WPN+TT+K  LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLETWLELNREYATKWPNLTTQKSPLPQAKEMDGVPNKLEKYFSENPGSG 111


>gi|153008467|ref|YP_001369682.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Ochrobactrum anthropi ATCC 49188]
 gi|239832850|ref|ZP_04681179.1| Ferredoxin-2 [Ochrobactrum intermedium LMG 3301]
 gi|151560355|gb|ABS13853.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|239825117|gb|EEQ96685.1| Ferredoxin-2 [Ochrobactrum intermedium LMG 3301]
          Length = 112

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K EKYFS  PG  +
Sbjct: 61  PGLDKWLELNTEYAAKWPNITAKKDALPEAKEMDGVAGKLEKYFSAEPGSGD 112


>gi|227823779|ref|YP_002827752.1| putative ferredoxin protein [Sinorhizobium fredii NGR234]
 gi|227342781|gb|ACP26999.1| putative ferredoxin protein [Sinorhizobium fredii NGR234]
          Length = 112

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/112 (75%), Positives = 99/112 (88%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL++WLK+N+++ATQWPNIT K++ LP A +MDGV+ KYE+YFS  PG  +
Sbjct: 61  PGLDMWLKLNADFATQWPNITVKRDPLPEAKEMDGVEGKYEQYFSEKPGQGD 112


>gi|240851256|ref|YP_002972659.1| ferredoxin II [Bartonella grahamii as4aup]
 gi|240268379|gb|ACS51967.1| ferredoxin II [Bartonella grahamii as4aup]
          Length = 113

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PDTE
Sbjct: 1   MTHVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+TTKK+ LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLHYANKWPNLTTKKDPLPQAKEMDGVPNKLEKYFSENPGSG 111


>gi|209551386|ref|YP_002283303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537142|gb|ACI57077.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 112

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KK+ LP A +MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKDPLPEAKEMDGETGKFEKYFSEKPGSGD 112


>gi|92116127|ref|YP_575856.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91799021|gb|ABE61396.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 112

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N++YA  WPN+T KK++ P A + +G + K+EKYFSPNPG  +
Sbjct: 61  PGLEKWLELNADYAKSWPNLTQKKDAPPDAKEFEGQEGKFEKYFSPNPGTGD 112


>gi|163869172|ref|YP_001610424.1| ferredoxin II [Bartonella tribocorum CIP 105476]
 gi|161018871|emb|CAK02429.1| ferredoxin II [Bartonella tribocorum CIP 105476]
          Length = 113

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PDTE
Sbjct: 1   MTHVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIVPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+TTKK+ LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLHYANKWPNLTTKKDPLPQAKEMDGVPNKLEKYFSENPGSG 111


>gi|49476178|ref|YP_034219.1| ferredoxin II [Bartonella henselae str. Houston-1]
 gi|49238986|emb|CAF28286.1| Ferredoxin II [Bartonella henselae str. Houston-1]
          Length = 112

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 94/111 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N +YA +WPN+TT+K+ LP A +MDG+  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLQYANKWPNLTTRKDPLPQAKEMDGIPDKLEKYFSENPGSG 111


>gi|118591278|ref|ZP_01548676.1| ferredoxin III protein [Stappia aggregata IAM 12614]
 gi|118435950|gb|EAV42593.1| ferredoxin III protein [Stappia aggregata IAM 12614]
          Length = 110

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/110 (73%), Positives = 95/110 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE W++IN+EY+ +WPNIT KK+ LP A + DG + K+EK+FSPNP  
Sbjct: 61  PGLEKWIEINAEYSEKWPNITEKKDPLPDAEEFDGKENKFEKFFSPNPAS 110


>gi|85713776|ref|ZP_01044766.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
 gi|85699680|gb|EAQ37547.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
          Length = 112

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EYA  WPNIT KKE+ P A + +G + K+EKYFSPNPG  +
Sbjct: 61  PGLEKWLEVNAEYAKSWPNITQKKEAPPDAKEFEGQEGKFEKYFSPNPGTGD 112


>gi|86359603|ref|YP_471495.1| ferredoxin III protein [Rhizobium etli CFN 42]
 gi|190893876|ref|YP_001980418.1| ferredoxin III protein [Rhizobium etli CIAT 652]
 gi|86283705|gb|ABC92768.1| ferredoxin III protein [Rhizobium etli CFN 42]
 gi|190699155|gb|ACE93240.1| ferredoxin III protein [Rhizobium etli CIAT 652]
          Length = 112

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 86/112 (76%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYA+ WPNIT KK+ LP A +MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYASIWPNITVKKDPLPEAKEMDGQTGKFEKYFSEKPGSGD 112


>gi|49474701|ref|YP_032743.1| ferredoxin II [Bartonella quintana str. Toulouse]
 gi|6984158|gb|AAF34779.1|AF228062_1 ferredoxin II [Bartonella quintana]
 gi|49240205|emb|CAF26673.1| Ferredoxin II [Bartonella quintana str. Toulouse]
          Length = 112

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/111 (74%), Positives = 94/111 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YV+T+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVITDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YAT+WPN+TT+K+ LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLHYATKWPNLTTRKDPLPQAKEMDGVANKLEKYFSENPGSG 111


>gi|85375452|ref|YP_459514.1| ferredoxin II [Erythrobacter litoralis HTCC2594]
 gi|84788535|gb|ABC64717.1| ferredoxin II [Erythrobacter litoralis HTCC2594]
          Length = 112

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL+IN++++  WPNIT KKE    A +  G + KYEKYFS  PG  +
Sbjct: 61  DGLEKWLEINTKFSADWPNITQKKEPPADADEHKGEEDKYEKYFSAEPGEGD 112


>gi|148556440|ref|YP_001264022.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingomonas wittichii RW1]
 gi|148501630|gb|ABQ69884.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sphingomonas
           wittichii RW1]
          Length = 112

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N+ +A QWPNIT K+E+   A +   V+ KYEK+FSP PG  +
Sbjct: 61  SGLEQWLELNNTFAAQWPNITRKREAPADADEWKNVEGKYEKHFSPEPGQGD 112


>gi|116254342|ref|YP_770180.1| ferredoxin II (FdII) [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258990|emb|CAK10099.1| putative ferredoxin II (FdII) [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 112

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KK+ LP A  MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKDPLPEAKDMDGETGKFEKYFSEKPGSGD 112


>gi|85709784|ref|ZP_01040849.1| ferredoxin II [Erythrobacter sp. NAP1]
 gi|85688494|gb|EAQ28498.1| ferredoxin II [Erythrobacter sp. NAP1]
          Length = 112

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE+CI CK+TDCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTEDCIKCKYTDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N++++ +WPNIT++K+    A +  G + K+EKYFS  PG  +
Sbjct: 61  DGLEKWLELNTKFSAEWPNITSQKDPPADADEHKGEENKFEKYFSAEPGEGD 112


>gi|148258714|ref|YP_001243299.1| ferredoxin II [Bradyrhizobium sp. BTAi1]
 gi|146410887|gb|ABQ39393.1| ferredoxin II [Bradyrhizobium sp. BTAi1]
          Length = 112

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/112 (74%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N+EYA  WPNIT KK+    A + DG   K+EKYFSP PG  +
Sbjct: 61  PGLEKWLGVNAEYAKAWPNITQKKDPPGDAKEHDGEAGKFEKYFSPKPGAGD 112


>gi|150398307|ref|YP_001328774.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150029822|gb|ABR61939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 112

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/112 (75%), Positives = 100/112 (89%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL++WLK+N++++TQWPNIT K++ LP A +MDG++ KYEKYFSP PG  +
Sbjct: 61  PGLDMWLKLNADFSTQWPNITVKRDPLPEATEMDGLEGKYEKYFSPEPGQGD 112


>gi|15967011|ref|NP_387364.1| putative ferredoxin protein [Sinorhizobium meliloti 1021]
 gi|307302479|ref|ZP_07582236.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti BL225C]
 gi|307316191|ref|ZP_07595635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti AK83]
 gi|15076284|emb|CAC47837.1| Putative ferredoxin protein [Sinorhizobium meliloti 1021]
 gi|306898031|gb|EFN28773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti AK83]
 gi|306903149|gb|EFN33739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti BL225C]
          Length = 112

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 86/112 (76%), Positives = 100/112 (89%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL++WLK+N+E++TQWPNIT K++ LP A +MDGV++KYEKYFS  PG  +
Sbjct: 61  PGLDMWLKLNAEFSTQWPNITVKRDPLPEAKEMDGVEEKYEKYFSSEPGQGD 112


>gi|254502406|ref|ZP_05114557.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438477|gb|EEE45156.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 110

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           PGLE W++IN+EY+ +WPNIT KK+ +P A K DG + K EKYFSPNP
Sbjct: 61  PGLEKWIEINAEYSEKWPNITEKKDPMPDADKFDGQENKLEKYFSPNP 108


>gi|296284816|ref|ZP_06862814.1| ferredoxin II [Citromicrobium bathyomarinum JL354]
          Length = 112

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WL++N++++ +WPNIT KK+    A +  G + K+EK+F+P PG  +
Sbjct: 61  DNLEKWLELNTKFSNEWPNITQKKDPPEDADEHKGEEGKFEKFFNPEPGEGD 112


>gi|241206828|ref|YP_002977924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860718|gb|ACS58385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 112

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 88/112 (78%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KKE LP A  MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKEPLPEAKDMDGETGKFEKYFSEKPGSGD 112


>gi|17986561|ref|NP_539195.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|23502624|ref|NP_698751.1| ferredoxin A [Brucella suis 1330]
 gi|62290637|ref|YP_222430.1| FdxA, ferredoxin A [Brucella abortus bv. 1 str. 9-941]
 gi|82700551|ref|YP_415125.1| 7Fe ferredoxin [Brucella melitensis biovar Abortus 2308]
 gi|148559196|ref|YP_001259611.1| ferredoxin A [Brucella ovis ATCC 25840]
 gi|161619692|ref|YP_001593579.1| ferredoxin-2 [Brucella canis ATCC 23365]
 gi|163845344|ref|YP_001622999.1| hypothetical protein BSUIS_B1243 [Brucella suis ATCC 23445]
 gi|189024849|ref|YP_001935617.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225853217|ref|YP_002733450.1| ferredoxin-2 [Brucella melitensis ATCC 23457]
 gi|237816138|ref|ZP_04595133.1| Ferredoxin-2 [Brucella abortus str. 2308 A]
 gi|254689926|ref|ZP_05153180.1| Ferredoxin-2 [Brucella abortus bv. 6 str. 870]
 gi|254694418|ref|ZP_05156246.1| Ferredoxin-2 [Brucella abortus bv. 3 str. Tulya]
 gi|254698077|ref|ZP_05159905.1| Ferredoxin-2 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700419|ref|ZP_05162247.1| Ferredoxin-2 [Brucella suis bv. 5 str. 513]
 gi|254703538|ref|ZP_05165366.1| Ferredoxin-2 [Brucella suis bv. 3 str. 686]
 gi|254708374|ref|ZP_05170202.1| Ferredoxin-2 [Brucella pinnipedialis M163/99/10]
 gi|254708773|ref|ZP_05170584.1| Ferredoxin-2 [Brucella pinnipedialis B2/94]
 gi|254719760|ref|ZP_05181571.1| Ferredoxin-2 [Brucella sp. 83/13]
 gi|254730961|ref|ZP_05189539.1| Ferredoxin-2 [Brucella abortus bv. 4 str. 292]
 gi|256030299|ref|ZP_05443913.1| Ferredoxin-2 [Brucella pinnipedialis M292/94/1]
 gi|256045368|ref|ZP_05448262.1| Ferredoxin-2 [Brucella melitensis bv. 1 str. Rev.1]
 gi|256114332|ref|ZP_05455070.1| Ferredoxin-2 [Brucella melitensis bv. 3 str. Ether]
 gi|256160472|ref|ZP_05458161.1| Ferredoxin-2 [Brucella ceti M490/95/1]
 gi|256255679|ref|ZP_05461215.1| Ferredoxin-2 [Brucella ceti B1/94]
 gi|256258181|ref|ZP_05463717.1| Ferredoxin-2 [Brucella abortus bv. 9 str. C68]
 gi|256263294|ref|ZP_05465826.1| 7Fe ferredoxin [Brucella melitensis bv. 2 str. 63/9]
 gi|256370173|ref|YP_003107684.1| ferredoxin A [Brucella microti CCM 4915]
 gi|260167973|ref|ZP_05754784.1| ferredoxin A [Brucella sp. F5/99]
 gi|260547125|ref|ZP_05822863.1| 7Fe ferredoxin [Brucella abortus NCTC 8038]
 gi|260565738|ref|ZP_05836221.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|260568844|ref|ZP_05839312.1| ferredoxin II [Brucella suis bv. 4 str. 40]
 gi|260755461|ref|ZP_05867809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 6 str. 870]
 gi|260758683|ref|ZP_05871031.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 4 str. 292]
 gi|260762518|ref|ZP_05874855.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884479|ref|ZP_05896093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 9 str. C68]
 gi|261214732|ref|ZP_05929013.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|261222885|ref|ZP_05937166.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti B1/94]
 gi|261315873|ref|ZP_05955070.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M163/99/10]
 gi|261316266|ref|ZP_05955463.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis B2/94]
 gi|261750917|ref|ZP_05994626.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 5 str. 513]
 gi|261754171|ref|ZP_05997880.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 3 str. 686]
 gi|261757415|ref|ZP_06001124.1| 7Fe ferredoxin [Brucella sp. F5/99]
 gi|265984779|ref|ZP_06097514.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella sp. 83/13]
 gi|265987330|ref|ZP_06099887.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M292/94/1]
 gi|265991796|ref|ZP_06104353.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995636|ref|ZP_06108193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|265998844|ref|ZP_06111401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M490/95/1]
 gi|294851011|ref|ZP_06791687.1| ferredoxin [Brucella sp. NVSL 07-0026]
 gi|297249031|ref|ZP_06932739.1| ferredoxin-2 [Brucella abortus bv. 5 str. B3196]
 gi|306839456|ref|ZP_07472264.1| Ferredoxin-2 [Brucella sp. NF 2653]
 gi|306841481|ref|ZP_07474181.1| Ferredoxin-2 [Brucella sp. BO2]
 gi|306844752|ref|ZP_07477337.1| Ferredoxin-2 [Brucella sp. BO1]
 gi|17982169|gb|AAL51459.1| ferredoxin ii [Brucella melitensis bv. 1 str. 16M]
 gi|23348629|gb|AAN30666.1| ferredoxin A [Brucella suis 1330]
 gi|62196769|gb|AAX75069.1| FdxA, ferredoxin A [Brucella abortus bv. 1 str. 9-941]
 gi|82616652|emb|CAJ11734.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Brucella melitensis biovar Abortus 2308]
 gi|148370453|gb|ABQ60432.1| ferredoxin A [Brucella ovis ATCC 25840]
 gi|161336503|gb|ABX62808.1| Ferredoxin-2 [Brucella canis ATCC 23365]
 gi|163676067|gb|ABY40177.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020421|gb|ACD73143.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225641582|gb|ACO01496.1| Ferredoxin-2 [Brucella melitensis ATCC 23457]
 gi|237788600|gb|EEP62813.1| Ferredoxin-2 [Brucella abortus str. 2308 A]
 gi|256000336|gb|ACU48735.1| ferredoxin A [Brucella microti CCM 4915]
 gi|260095490|gb|EEW79368.1| 7Fe ferredoxin [Brucella abortus NCTC 8038]
 gi|260151111|gb|EEW86206.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|260154228|gb|EEW89310.1| ferredoxin II [Brucella suis bv. 4 str. 40]
 gi|260669001|gb|EEX55941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 4 str. 292]
 gi|260672944|gb|EEX59765.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675569|gb|EEX62390.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 6 str. 870]
 gi|260874007|gb|EEX81076.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 9 str. C68]
 gi|260916339|gb|EEX83200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|260921469|gb|EEX88122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti B1/94]
 gi|261295489|gb|EEX98985.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis B2/94]
 gi|261304899|gb|EEY08396.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M163/99/10]
 gi|261737399|gb|EEY25395.1| 7Fe ferredoxin [Brucella sp. F5/99]
 gi|261740670|gb|EEY28596.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 5 str. 513]
 gi|261743924|gb|EEY31850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 3 str. 686]
 gi|262553533|gb|EEZ09302.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M490/95/1]
 gi|262766920|gb|EEZ12538.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002752|gb|EEZ15155.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093261|gb|EEZ17358.1| 7Fe ferredoxin [Brucella melitensis bv. 2 str. 63/9]
 gi|264659527|gb|EEZ29788.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M292/94/1]
 gi|264663371|gb|EEZ33632.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella sp. 83/13]
 gi|294821654|gb|EFG38650.1| ferredoxin [Brucella sp. NVSL 07-0026]
 gi|297174164|gb|EFH33521.1| ferredoxin-2 [Brucella abortus bv. 5 str. B3196]
 gi|306274924|gb|EFM56694.1| Ferredoxin-2 [Brucella sp. BO1]
 gi|306288445|gb|EFM59801.1| Ferredoxin-2 [Brucella sp. BO2]
 gi|306405401|gb|EFM61672.1| Ferredoxin-2 [Brucella sp. NF 2653]
 gi|326409774|gb|ADZ66839.1| 7Fe ferredoxin [Brucella melitensis M28]
 gi|326539491|gb|ADZ87706.1| ferredoxin-2 [Brucella melitensis M5-90]
          Length = 112

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLEQYFSPEAGSGD 112


>gi|256061798|ref|ZP_05451933.1| Ferredoxin-2 [Brucella neotomae 5K33]
 gi|261325800|ref|ZP_05964997.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella neotomae 5K33]
 gi|261301780|gb|EEY05277.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella neotomae 5K33]
          Length = 112

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLERYFSPEAGSGD 112


>gi|163853279|ref|YP_001641322.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|218532095|ref|YP_002422911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240140687|ref|YP_002965167.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methylobacterium extorquens AM1]
 gi|254563202|ref|YP_003070297.1| ferredoxin II [Methylobacterium extorquens DM4]
 gi|163664884|gb|ABY32251.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
 gi|218524398|gb|ACK84983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240010664|gb|ACS41890.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methylobacterium extorquens AM1]
 gi|254270480|emb|CAX26480.1| ferredoxin II [Methylobacterium extorquens DM4]
          Length = 112

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WLK+N++YA  WPNIT KK++   A + DGV  K E +FSPNPG  +
Sbjct: 61  GDLESWLKLNADYAKTWPNITQKKDAPSDAKQWDGVSGKLEAHFSPNPGSGD 112


>gi|39933566|ref|NP_945842.1| ferredoxin II [Rhodopseudomonas palustris CGA009]
 gi|192288920|ref|YP_001989525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Rhodopseudomonas palustris TIE-1]
 gi|39647412|emb|CAE25933.1| ferredoxin II [Rhodopseudomonas palustris CGA009]
 gi|192282669|gb|ACE99049.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Rhodopseudomonas palustris TIE-1]
          Length = 112

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++NSEYA  WPN+T KK++   A + DG   K+EKYFS  PG  +
Sbjct: 61  PGLEKWLELNSEYAKTWPNLTQKKDAPADAKEFDGQAGKFEKYFSSEPGSGD 112


>gi|86747676|ref|YP_484172.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           HaA2]
 gi|86570704|gb|ABD05261.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           HaA2]
          Length = 112

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++NSEYA  WPN+T KK+S   A   DGV+ K+EK+FSP PG  +
Sbjct: 61  PGLEKWLELNSEYAKTWPNLTQKKDSPDDAKTFDGVEGKFEKFFSPEPGTGD 112


>gi|27375268|ref|NP_766797.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gi|27348404|dbj|BAC45422.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
          Length = 112

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 85/112 (75%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N++YA  WPNIT KKES   A + DG++ K+EKYFSPNPG  +
Sbjct: 61  PGLEKWLSVNADYAKSWPNITQKKESPADAKEFDGMEGKFEKYFSPNPGSGD 112


>gi|149185281|ref|ZP_01863598.1| ferredoxin II [Erythrobacter sp. SD-21]
 gi|148831392|gb|EDL49826.1| ferredoxin II [Erythrobacter sp. SD-21]
          Length = 112

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/112 (61%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WL++N++++ +WPNIT++KE    A +  G + K++K+FS  PG  +
Sbjct: 61  DNLEKWLELNTKFSAEWPNITSQKEPPADADEHKGEEGKFDKFFSAEPGEGD 112


>gi|75676994|ref|YP_319415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter winogradskyi
           Nb-255]
 gi|74421864|gb|ABA06063.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 112

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P LE WLK+N+EY+  WPNIT K+++   A   DGV  K E+YFS NPG  +
Sbjct: 61  PDLENWLKLNAEYSAVWPNITIKRDAPADAKTFDGVAGKLEQYFSANPGQGD 112


>gi|87198149|ref|YP_495406.1| 4Fe-4S ferredoxin, iron-sulfur binding [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133830|gb|ABD24572.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 112

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N++Y+ +WPNIT KK++   A +  G + K++KYFS  PG  +
Sbjct: 61  SGLEQWLELNAKYSAEWPNITAKKDAPADADEHKGEEGKFDKYFSAEPGEGD 112


>gi|220921711|ref|YP_002497012.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219946317|gb|ACL56709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 112

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WLK+N++ A  WPNIT KK +   A + DGV  KYE +FSPNPG  +
Sbjct: 61  PGLEKWLKLNADLAKSWPNITQKKPAPADAKEWDGVAGKYEAHFSPNPGSGD 112


>gi|222150213|ref|YP_002551170.1| ferredoxin [Agrobacterium vitis S4]
 gi|221737195|gb|ACM38158.1| ferredoxin [Agrobacterium vitis S4]
          Length = 116

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 99/112 (88%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 5   MTYIVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+E+A  WPNITTK+++LP A +MDGV+ K+E YFS  PG  +
Sbjct: 65  PGLDKWLKINAEFAQVWPNITTKRDALPEAKEMDGVEGKFELYFSEKPGTGD 116


>gi|94497219|ref|ZP_01303791.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sphingomonas sp.
           SKA58]
 gi|94423324|gb|EAT08353.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sphingomonas sp.
           SKA58]
          Length = 112

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N++Y+ +WPNIT K ++   A  M+GV+ K E++FSP PG  +
Sbjct: 61  NGLEKWLELNTKYSAEWPNITVKGDAPADAEAMNGVENKLEQFFSPEPGKGD 112


>gi|90422071|ref|YP_530441.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
 gi|90104085|gb|ABD86122.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 112

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE CI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTEACIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EY+  WPNIT KK++   A + + V+ K++KYFS  PG  +
Sbjct: 61  PGLEKWLEVNAEYSKTWPNITQKKDAPADAKEFESVEGKFDKYFSAEPGTGD 112


>gi|85714492|ref|ZP_01045480.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
 gi|85698939|gb|EAQ36808.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
          Length = 112

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 77/112 (68%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P LE WLK+N+EYA  WPNIT K+++   A   DGV  K E+YFS NPG  +
Sbjct: 61  PDLENWLKLNAEYAAVWPNITIKRDAPADAKTFDGVAGKLEQYFSANPGQGD 112


>gi|319407755|emb|CBI81402.1| ferredoxin II [Bartonella sp. 1-1C]
          Length = 112

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 83/111 (74%), Positives = 93/111 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDG+  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLRYAKKWPNLMTKKDPLPQAKEMDGIPNKLEKYFSENPGNG 111


>gi|154252147|ref|YP_001412971.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Parvibaculum lavamentivorans DS-1]
 gi|154156097|gb|ABS63314.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 112

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYIVTDACIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EYA++WPNIT K++    A    GV  K+E++FS  PG  +
Sbjct: 61  PGLEKWLELNTEYASKWPNITIKRDPPADADDWQGVSGKFEEHFSAEPGEGD 112


>gi|91974761|ref|YP_567420.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
 gi|91681217|gb|ABE37519.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
          Length = 112

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EYA  WPN+T KKE+   A + +G++ K+EK+FSP PG  +
Sbjct: 61  PGLEKWLELNTEYAKSWPNLTQKKEAPGDAKQYEGMEGKFEKFFSPEPGTGD 112


>gi|170750106|ref|YP_001756366.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656628|gb|ACB25683.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 112

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             L+ WLK+N++YA  WPNIT KKE+   A + DG   K E +FSPNPG  +
Sbjct: 61  SNLDTWLKLNADYAKSWPNITQKKEAPADAKEWDGKTGKLEAHFSPNPGSGD 112


>gi|254780416|ref|YP_003064829.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040093|gb|ACT56889.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 113

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT
Sbjct: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113


>gi|325294121|ref|YP_004279985.1| Ferredoxin [Agrobacterium sp. H13-3]
 gi|325061974|gb|ADY65665.1| Ferredoxin [Agrobacterium sp. H13-3]
          Length = 112

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLK+N+EYA  WPNIT K++ LP A +MDGV  K E YFS  PG  +
Sbjct: 61  PGLDKWLKLNTEYAAIWPNITIKRDPLPEAKEMDGVTGKLELYFSAEPGKGD 112


>gi|209883218|ref|YP_002287075.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
 gi|209871414|gb|ACI91210.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
          Length = 112

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P LE WL +N+EYA  WPNIT KK+    A + DG + K+++YFSPNPG  +
Sbjct: 61  PDLEKWLGVNAEYAKTWPNITQKKDPPDDAKEFDGAEGKFDQYFSPNPGTGD 112


>gi|188583532|ref|YP_001926977.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179347030|gb|ACB82442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 112

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WLK+N++YA  WPNIT KK++   A + DGV  K E +FSPNPG  +
Sbjct: 61  GNLESWLKLNADYAKTWPNITQKKDAPTDAKQWDGVGGKLEAHFSPNPGSGD 112


>gi|326386141|ref|ZP_08207765.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209366|gb|EGD60159.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 112

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE CI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTEACIKCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N++Y+ +WPN+T KK++   A +  G + K++KYFS  PG  +
Sbjct: 61  SGLEQWLELNAKYSAEWPNLTAKKDAPADADEHKGEEGKFDKYFSAEPGEGD 112


>gi|254475184|ref|ZP_05088570.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214029427|gb|EEB70262.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 112

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +Y+  WP I +KK+ LP A + DG + K EKYFS  PG  
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPLPDAEERDGEEGKLEKYFSEAPGEG 111


>gi|110679119|ref|YP_682126.1| ferredoxin II [Roseobacter denitrificans OCh 114]
 gi|109455235|gb|ABG31440.1| ferredoxin II [Roseobacter denitrificans OCh 114]
          Length = 112

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP+A + DG   K EKYFS NPG  
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPTAEERDGETGKLEKYFSENPGEG 111


>gi|307294531|ref|ZP_07574373.1| ferredoxin [Sphingobium chlorophenolicum L-1]
 gi|306879005|gb|EFN10223.1| ferredoxin [Sphingobium chlorophenolicum L-1]
          Length = 112

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/111 (64%), Positives = 90/111 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            GLE WL++N++++ +WPNIT K ++   A  M GV+ K+E++FSP PG  
Sbjct: 61  NGLEKWLELNTKFSAEWPNITVKGDAPADADDMKGVENKFEQFFSPEPGAG 111


>gi|170742913|ref|YP_001771568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168197187|gb|ACA19134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 112

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WLK+N+++A  WPNIT KK +   A + DGV  K++ +FS NPG  +
Sbjct: 61  PGLERWLKLNADFAKNWPNITQKKTAPSDAKEWDGVAGKFDAHFSSNPGTGD 112


>gi|163736062|ref|ZP_02143485.1| ferredoxin II [Roseobacter litoralis Och 149]
 gi|161390658|gb|EDQ15004.1| ferredoxin II [Roseobacter litoralis Och 149]
          Length = 112

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCISCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP+A + DG   K EKYFS NPG  
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPTAEERDGETGKLEKYFSENPGEG 111


>gi|254714616|ref|ZP_05176427.1| Ferredoxin-2 [Brucella ceti M644/93/1]
 gi|254717514|ref|ZP_05179325.1| Ferredoxin-2 [Brucella ceti M13/05/1]
 gi|261219349|ref|ZP_05933630.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M13/05/1]
 gi|261322410|ref|ZP_05961607.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M644/93/1]
 gi|260924438|gb|EEX91006.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M13/05/1]
 gi|261295100|gb|EEX98596.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M644/93/1]
          Length = 112

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++L  A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALLEAKEMDGVAGKLEQYFSPEAGSGD 112


>gi|260753231|ref|YP_003226124.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|258552594|gb|ACV75540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 112

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE W+++N +YA +WPNIT K +    A +M  V  K EK+FSP PG  +
Sbjct: 61  NGLESWMELNRKYAEEWPNITHKTDVPGDADEMREVTGKLEKFFSPKPGNGD 112


>gi|84500894|ref|ZP_00999129.1| iron-sulfur cluster-binding protein [Oceanicola batsensis HTCC2597]
 gi|84390961|gb|EAQ03379.1| iron-sulfur cluster-binding protein [Oceanicola batsensis HTCC2597]
          Length = 112

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 85/111 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P  E W++ N +Y+  WP I T+K+ LP A + DG   K EKYFS  PG  
Sbjct: 61  PDTEKWVEFNRKYSEMWPVIITRKDPLPEAEERDGETGKLEKYFSEKPGEG 111


>gi|316931530|ref|YP_004106512.1| ferredoxin [Rhodopseudomonas palustris DX-1]
 gi|315599244|gb|ADU41779.1| ferredoxin [Rhodopseudomonas palustris DX-1]
          Length = 112

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+E+A  WPN+T KK++   A + DG   K++KYFS  PG  +
Sbjct: 61  PGLEKWLELNAEHAKTWPNLTQKKDAPADAKEFDGQAGKFDKYFSSEPGSGD 112


>gi|103488218|ref|YP_617779.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sphingopyxis alaskensis
           RB2256]
 gi|98978295|gb|ABF54446.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sphingopyxis alaskensis
           RB2256]
          Length = 112

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACVRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++NS+++ +WPNIT KKE+   A +  GV+ K+EK+FSP PG  +
Sbjct: 61  SGLEKWLEVNSKFSAEWPNITVKKETPADADEYKGVEGKFEKFFSPEPGEGD 112


>gi|260434065|ref|ZP_05788036.1| ferredoxin-1 [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417893|gb|EEX11152.1| ferredoxin-1 [Silicibacter lacuscaerulensis ITI-1157]
          Length = 112

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/111 (72%), Positives = 89/111 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PG+E W++ N +YA  WP I +KK+ LP A K DG + K EKYFS  PG  
Sbjct: 61  PGMEQWVEFNRKYAEIWPVIVSKKDPLPDAEKHDGEEGKMEKYFSEAPGEG 111


>gi|159043337|ref|YP_001532131.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911097|gb|ABV92530.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dinoroseobacter shibae DFL 12]
          Length = 112

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/111 (69%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYSEAWPVIITKKDQLPDAEERDGEQGKLEKYFSEAPGEG 111


>gi|294678312|ref|YP_003578927.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
 gi|119953|sp|P18082|FER2_RHOCA RecName: Full=Ferredoxin-2; AltName: Full=Ferredoxin II; Short=FdII
 gi|46012|emb|CAA37388.1| unnamed protein product [Rhodobacter capsulatus]
 gi|151914|gb|AAA26108.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
 gi|294477132|gb|ADE86520.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
          Length = 112

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E W++ N  YA+QWP IT KK+ +P   K DG   K EKYFSPNPG  +
Sbjct: 61  PGMEDWVEFNRTYASQWPVITIKKDPMPDHKKYDGETGKREKYFSPNPGTGD 112


>gi|319899400|ref|YP_004159497.1| ferredoxin II [Bartonella clarridgeiae 73]
 gi|319403368|emb|CBI76927.1| ferredoxin II [Bartonella clarridgeiae 73]
          Length = 112

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M Y+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYIVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLNYANKWPNLMTKKDPLPQAKEMDGVPDKLEKYFSENPGSG 111


>gi|56551116|ref|YP_161955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761474|ref|ZP_04759562.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|56542690|gb|AAV88844.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241374381|gb|EER63878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 112

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE W+++N +YA +WPNIT K +    A +M  V  K EK+FSP PG  +
Sbjct: 61  NGLESWMELNRKYAEEWPNITHKTDVPADADEMREVTGKLEKFFSPKPGNGD 112


>gi|298293647|ref|YP_003695586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Starkeya
           novella DSM 506]
 gi|296930158|gb|ADH90967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Starkeya
           novella DSM 506]
          Length = 111

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 92/112 (82%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCV VCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVSVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL +N+EYA  WPNIT +K+ LP A + DGV  K + Y SP PG ++
Sbjct: 61  PGLDKWLSLNAEYAKVWPNITDRKDPLPDAKEWDGVPDKLQ-YLSPEPGKQD 111


>gi|115522155|ref|YP_779066.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gi|115516102|gb|ABJ04086.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Rhodopseudomonas palustris BisA53]
          Length = 112

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N+E+A  WPNIT KK++   A   DG + K++KYFS  PG  +
Sbjct: 61  PGLEQWLSLNAEHAKSWPNITQKKDAPADAKSFDGAEGKFDKYFSAEPGSGD 112


>gi|121602702|ref|YP_988462.1| ferredoxin [Bartonella bacilliformis KC583]
 gi|120614879|gb|ABM45480.1| ferredoxin [Bartonella bacilliformis KC583]
          Length = 112

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 84/110 (76%), Positives = 95/110 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YAT+WPN++T+K  LP A +MDG+  K EKYFS NPGG
Sbjct: 61  PGLEQWLELNLNYATKWPNLSTQKPPLPEAKEMDGIPNKLEKYFSENPGG 110


>gi|294012720|ref|YP_003546180.1| ferredoxin [Sphingobium japonicum UT26S]
 gi|292676050|dbj|BAI97568.1| ferredoxin [Sphingobium japonicum UT26S]
          Length = 112

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/111 (64%), Positives = 90/111 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            GLE WL++N++++ +WPNIT K E+   A  M G++ K+E++FSP PG  
Sbjct: 61  NGLEKWLELNTKFSAEWPNITVKGEAPADADDMKGIENKFEQFFSPEPGAG 111


>gi|149916594|ref|ZP_01905108.1| ferredoxin II [Roseobacter sp. AzwK-3b]
 gi|149809521|gb|EDM69381.1| ferredoxin II [Roseobacter sp. AzwK-3b]
          Length = 112

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/111 (68%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ +P A + DG + K EKYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQMPDAEERDGEEGKLEKYFSEKPGEG 111


>gi|163738512|ref|ZP_02145927.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
 gi|163743577|ref|ZP_02150954.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161383162|gb|EDQ07554.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161388433|gb|EDQ12787.1| ferredoxin-2 [Phaeobacter gallaeciensis BS107]
          Length = 112

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +Y+  WP I +KK+ LP A + DG + K EKYFS  PG  
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPLPEAEERDGEEGKLEKYFSEAPGEG 111


>gi|319406280|emb|CBI79917.1| ferredoxin II [Bartonella sp. AR 15-3]
          Length = 112

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/111 (74%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDGV  K E YFS NPG  
Sbjct: 61  PGLEKWLELNLNYANKWPNLMTKKDPLPQAKEMDGVLNKLETYFSENPGSG 111


>gi|119384563|ref|YP_915619.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Paracoccus denitrificans PD1222]
 gi|119374330|gb|ABL69923.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Paracoccus
           denitrificans PD1222]
          Length = 112

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 77/112 (68%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI+CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIMCKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +YA  WP IT KK+ +P   +MDG   K EKYFS  PG  +
Sbjct: 61  PDMDKWVEFNRKYAESWPVITRKKDPMPGYQEMDGAPGKLEKYFSEAPGEGD 112


>gi|75674609|ref|YP_317030.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter winogradskyi
           Nb-255]
 gi|74419479|gb|ABA03678.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 112

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E WL++N+EYA +WPNIT KKE+ P A   +G + K+EKYFSP+PG  +
Sbjct: 61  PGVEKWLEVNAEYAGRWPNITQKKETPPDAKDFEGQEGKFEKYFSPDPGTGD 112


>gi|254486267|ref|ZP_05099472.1| ferredoxin II [Roseobacter sp. GAI101]
 gi|214043136|gb|EEB83774.1| ferredoxin II [Roseobacter sp. GAI101]
          Length = 112

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 87/111 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEERDGEEGKLEKYFSEAPGEG 111


>gi|83955683|ref|ZP_00964263.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
 gi|83839977|gb|EAP79153.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
          Length = 112

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 86/111 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP A K DG + K EKYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEKRDGEEGKLEKYFSEAPGEG 111


>gi|83941124|ref|ZP_00953586.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
 gi|83846944|gb|EAP84819.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
          Length = 112

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 86/111 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEERDGEEGKLEKYFSEAPGEG 111


>gi|254459551|ref|ZP_05072967.1| ferredoxin II [Rhodobacterales bacterium HTCC2083]
 gi|206676140|gb|EDZ40627.1| ferredoxin II [Rhodobacteraceae bacterium HTCC2083]
          Length = 112

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 87/111 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQLPDAEERDGEEGKLEKYFSEKPGEG 111


>gi|307943599|ref|ZP_07658943.1| ferredoxin-1 [Roseibium sp. TrichSKD4]
 gi|307773229|gb|EFO32446.1| ferredoxin-1 [Roseibium sp. TrichSKD4]
          Length = 114

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 80/107 (74%), Positives = 92/107 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 5   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           PGLE W+++N+EY+ +WPNIT KK+ LP A + DG K K EKYFSPN
Sbjct: 65  PGLEKWIELNAEYSEKWPNITEKKDELPEAKEFDGKKDKLEKYFSPN 111


>gi|90420289|ref|ZP_01228197.1| ferredoxin II [Aurantimonas manganoxydans SI85-9A1]
 gi|90335623|gb|EAS49373.1| ferredoxin II [Aurantimonas manganoxydans SI85-9A1]
          Length = 112

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+ DCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYLVTDNCIRCKYMDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P L+ WLKIN+EYA +WPNIT K+++   A K DG   K+EKYFS  PG  +
Sbjct: 61  PNLDKWLKINTEYAEKWPNITIKRDAPADAEKFDGEDGKFEKYFSAEPGQGD 112


>gi|159185361|ref|NP_355681.2| ferredoxin [Agrobacterium tumefaciens str. C58]
 gi|159140612|gb|AAK88466.2| ferredoxin [Agrobacterium tumefaciens str. C58]
          Length = 112

 Score =  133 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYA  WPNIT K++ +P A +MDGV+ K E YFS  PG  +
Sbjct: 61  PGLDKWLKINTEYAAIWPNITIKRDPMPEAKEMDGVEGKLELYFSAEPGKGD 112


>gi|13473302|ref|NP_104869.1| ferredoxin II [Mesorhizobium loti MAFF303099]
 gi|14024050|dbj|BAB50655.1| ferredoxin II [Mesorhizobium loti MAFF303099]
          Length = 112

 Score =  133 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL+IN+EYA +WPNIT KKE    A   DG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLQINTEYAEKWPNITAKKEPPADAKTFDGEAGKFEKYFSAEPGEGD 112


>gi|300024664|ref|YP_003757275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526485|gb|ADJ24954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 112

 Score =  133 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV E CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVNEKCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E WL++N +YA  WPNIT KK +LP A  +     K+EKYFSPN G  +
Sbjct: 61  PGMERWLELNRQYADNWPNITAKKAALPDADDIKDEPGKFEKYFSPNAGSGD 112


>gi|222087731|ref|YP_002546268.1| ferredoxin III protein [Agrobacterium radiobacter K84]
 gi|221725179|gb|ACM28335.1| ferredoxin III protein [Agrobacterium radiobacter K84]
          Length = 116

 Score =  133 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 83/112 (74%), Positives = 98/112 (87%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NC+ CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 5   MTYVVTDNCVRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN++YA  WPNIT K+++LP A ++DG + K+EKYFS NPG  +
Sbjct: 65  PGLDKWLKINADYAAIWPNITVKRDALPEAKELDGEEGKFEKYFSANPGAGD 116


>gi|323138997|ref|ZP_08074057.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylocystis sp. ATCC 49242]
 gi|322395751|gb|EFX98292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylocystis sp. ATCC 49242]
          Length = 112

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WLK+N++ A  WPNIT K+E    A + DG   K+E +FS  PG  +
Sbjct: 61  ENLEQWLKLNADMAQNWPNITIKREPPADAKEWDGKPGKFEAHFSAEPGQGD 112


>gi|299132817|ref|ZP_07026012.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298592954|gb|EFI53154.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 112

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WL +N+EYA  WPNIT KK++   A + DG + K++ YFSPNPG  +
Sbjct: 61  ADLEKWLGVNAEYAKTWPNITQKKDAPADAKEFDGAEGKFDNYFSPNPGTGD 112


>gi|254512440|ref|ZP_05124507.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221536151|gb|EEE39139.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 112

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/111 (71%), Positives = 90/111 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PG+E W++ N +Y+ QWP I TKK+ +P A + DG + K EKYFS  PG  
Sbjct: 61  PGMEEWVEFNRKYSEQWPVIVTKKDPMPDAEERDGEEGKMEKYFSEAPGEG 111


>gi|84687444|ref|ZP_01015322.1| iron-sulfur cluster-binding protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664602|gb|EAQ11088.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 110

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 74/110 (67%), Positives = 85/110 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDKCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P  E W++ N +Y+  WP I  KK+ LP A + DG + K EKYFS  PGG
Sbjct: 61  PEAEKWVEFNRKYSELWPVIIEKKDPLPEAEERDGEEGKLEKYFSEAPGG 110


>gi|260461458|ref|ZP_05809705.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032528|gb|EEW33792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 112

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL+ WL+IN+EYA +WPNIT KKE    A   DG   K+EKYFS  PG  +
Sbjct: 61  SGLDKWLQINTEYAEKWPNITAKKEPPADAKTFDGEAGKFEKYFSAEPGEGD 112


>gi|319781059|ref|YP_004140535.1| ferredoxin II [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166947|gb|ADV10485.1| ferredoxin II [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 112

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KKE    A   DG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLQVNTEYAEKWPNITAKKEPPADAKSFDGEAGKFEKYFSAEPGEGD 112


>gi|99080416|ref|YP_612570.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036696|gb|ABF63308.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 112

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 87/111 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +YA  WP I +KK+ +P   + DG + K EKYFS  PG  
Sbjct: 61  PDMDQWVEFNRKYAELWPVIVSKKDPMPGHEERDGEEGKLEKYFSEAPGEG 111


>gi|86137858|ref|ZP_01056434.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85825450|gb|EAQ45649.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 112

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +Y+  WP I +KK+ +P A + DG + K EKYFS  PG  
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPMPEAEERDGEEGKLEKYFSEAPGEG 111


>gi|328542019|ref|YP_004302128.1| Ferredoxin II [polymorphum gilvum SL003B-26A1]
 gi|326411769|gb|ADZ68832.1| Ferredoxin II [Polymorphum gilvum SL003B-26A1]
          Length = 112

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 81/107 (75%), Positives = 93/107 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           PGLE W++IN+EYA +WPNIT KK+ LP AA+ DG   K+E+YFSPN
Sbjct: 61  PGLEKWIEINAEYAAKWPNITVKKDPLPEAAEFDGKAGKFEQYFSPN 107


>gi|56696303|ref|YP_166660.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56678040|gb|AAV94706.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 112

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/111 (71%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENALVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PG+E W++ N +Y+  WP I TKK+ LP A + DG   K EKYFS  PG  
Sbjct: 61  PGMEQWVEFNRKYSEMWPVIVTKKDPLPEAEERDGESGKMEKYFSEAPGEG 111


>gi|146277598|ref|YP_001167757.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145555839|gb|ABP70452.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 112

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/111 (68%), Positives = 86/111 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MAYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E WL++N +YA  WP I TKK+ LP AA +DG   K   +FS  PG  
Sbjct: 61  PDMESWLELNRKYAEIWPVIVTKKDPLPEAADLDGQTGKLATHFSEKPGEG 111


>gi|77462982|ref|YP_352486.1| ferredoxin II [Rhodobacter sphaeroides 2.4.1]
 gi|126461856|ref|YP_001042970.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221638838|ref|YP_002525100.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides KD131]
 gi|332557858|ref|ZP_08412180.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides WS8N]
 gi|77387400|gb|ABA78585.1| ferredoxin II [Rhodobacter sphaeroides 2.4.1]
 gi|126103520|gb|ABN76198.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221159619|gb|ACM00599.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides KD131]
 gi|332275570|gb|EGJ20885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides WS8N]
          Length = 112

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 86/111 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W+++N +YA  WP I TKK+ LP A  +DG   K   +FS  PG  
Sbjct: 61  PDMESWVELNRKYAEVWPVIVTKKDPLPEATDLDGQPGKLATHFSEKPGEG 111


>gi|149202303|ref|ZP_01879276.1| iron-sulfur cluster-binding protein [Roseovarius sp. TM1035]
 gi|149144401|gb|EDM32432.1| iron-sulfur cluster-binding protein [Roseovarius sp. TM1035]
          Length = 112

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 85/111 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +YA  WP I TKK+ LP A + DG   K EKYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYAEMWPVIITKKDPLPEAEERDGEAGKLEKYFSEAPGLG 111


>gi|126727501|ref|ZP_01743335.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
 gi|126703281|gb|EBA02380.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
          Length = 112

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/111 (63%), Positives = 88/111 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +Y+  WP I T+K+   +AA+M+GV+ K E +FS  PG  
Sbjct: 61  PDMDKWVEFNRKYSELWPVIITRKDPPANAAEMEGVEGKLESHFSEKPGTG 111


>gi|85707560|ref|ZP_01038630.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85667917|gb|EAQ22808.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 112

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 85/111 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +YA  WP I TKK+ LP A + DG   K +KYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYAEMWPVIITKKDPLPEAEERDGEAGKLDKYFSEAPGEG 111


>gi|114764921|ref|ZP_01444094.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542633|gb|EAU45657.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 112

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/111 (68%), Positives = 87/111 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I +KK+ +P A + DG   K EKYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIISKKDPMPEAEERDGEPGKMEKYFSEAPGEG 111


>gi|312112940|ref|YP_004010536.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218069|gb|ADP69437.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 114

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/113 (69%), Positives = 88/113 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK TDCVEVCPVDCFYEG N L I PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYVVLDACIKCKFTDCVEVCPVDCFYEGANMLVISPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           PGLE +L++N EYA  WPNIT KK  LP   K     +K+EKYFSP+PG  ++
Sbjct: 61  PGLEKFLEVNREYAALWPNITVKKPPLPDYEKFQQEAEKFEKYFSPDPGEGDS 113


>gi|259417758|ref|ZP_05741677.1| ferredoxin-1 [Silicibacter sp. TrichCH4B]
 gi|259346664|gb|EEW58478.1| ferredoxin-1 [Silicibacter sp. TrichCH4B]
          Length = 112

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 87/111 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +YA  WP I +KK+ +P   + DG + K EKYFS  PG  
Sbjct: 61  PDMDQWVEFNRKYAELWPVIVSKKDPMPGYEERDGEEGKLEKYFSEAPGEG 111


>gi|297180169|gb|ADI16391.1| ferredoxin [uncultured bacterium HF130_12L15]
          Length = 112

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EYA +WPNIT KKE    A + DGV+ K+EKYFS   G  +
Sbjct: 61  PGLEKWLQVNTEYADKWPNITAKKEPPADAKEFDGVEGKFEKYFSAEAGEGD 112


>gi|296447998|ref|ZP_06889904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylosinus
           trichosporium OB3b]
 gi|296254508|gb|EFH01629.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylosinus
           trichosporium OB3b]
          Length = 112

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 84/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEG N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MPYVVTENCIKCKYMDCVEVCPVDCFYEGVNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P LE W+ +N+EYA  WPN+T K++    A + DG   K E  FSP PG  +
Sbjct: 61  PDLEKWMALNAEYAQVWPNVTIKRDPPADAKEWDGKPGKLESGFSPEPGQGD 112


>gi|254466025|ref|ZP_05079436.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodobacterales bacterium
           Y4I]
 gi|206686933|gb|EDZ47415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodobacterales bacterium
           Y4I]
          Length = 112

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/111 (68%), Positives = 87/111 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +YA  WP I +KK+ LP   + DG + K EKYFS  PG  
Sbjct: 61  PDMDKWVEFNRKYAELWPVIVSKKDPLPGYEERDGEEGKMEKYFSEAPGEG 111


>gi|114706527|ref|ZP_01439428.1| ferredoxin II [Fulvimarina pelagi HTCC2506]
 gi|114537919|gb|EAU41042.1| ferredoxin II [Fulvimarina pelagi HTCC2506]
          Length = 112

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYLVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYA +WPNIT  KE    A K DG + K+EKYFS  PG  +
Sbjct: 61  PGLDHWLKINTEYAEKWPNITIAKEKPEDAEKYDGEEGKFEKYFSAEPGSGD 112


>gi|319404795|emb|CBI78396.1| ferredoxin II [Bartonella rochalimae ATCC BAA-1498]
          Length = 112

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDG+  K EK FS NPG  
Sbjct: 61  PGLEKWLELNLRYAKKWPNLMTKKDPLPQAKEMDGIPNKLEKCFSENPGNG 111


>gi|304394151|ref|ZP_07376074.1| ferredoxin [Ahrensia sp. R2A130]
 gi|303293591|gb|EFL87968.1| ferredoxin [Ahrensia sp. R2A130]
          Length = 112

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYLVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLK+N+E+A +WPNI  K E    A K DG K K+EKYFS  PG  N
Sbjct: 61  PGLDNWLKVNTEFAEKWPNIIAKGEQPGDAEKFDGEKGKFEKYFSAEPGEGN 112


>gi|126738719|ref|ZP_01754415.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126719900|gb|EBA16607.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 112

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 87/111 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +Y+  WP I +KK+ +P   + DG + K EKYFS  PG  
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPMPGYEEKDGEEGKLEKYFSEAPGEG 111


>gi|154246582|ref|YP_001417540.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xanthobacter autotrophicus Py2]
 gi|154160667|gb|ABS67883.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 111

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 85/112 (75%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD E
Sbjct: 1   MTYVVTENCIRCKYMDCVSVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL +N+EYA  WPNIT K++    A + DG   K E+ FSP PG  +
Sbjct: 61  LGLEKWLALNAEYAKAWPNITLKRDPPADAKEWDGKPGK-EELFSPEPGQGD 111


>gi|126729324|ref|ZP_01745138.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126710314|gb|EBA09366.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 112

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 86/111 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVIDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+ +WP I TKK+ LP A + DG   K  KYFS  PG  
Sbjct: 61  PDMEKWVEFNRKYSEEWPVIITKKDPLPEAEERDGETDKVTKYFSEKPGEG 111


>gi|260426157|ref|ZP_05780136.1| ferredoxin [Citreicella sp. SE45]
 gi|260420649|gb|EEX13900.1| ferredoxin [Citreicella sp. SE45]
          Length = 112

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 85/111 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +YA  WP I +KKE +P     DG   K +KYFS  PG  
Sbjct: 61  PDMDKWVEFNRKYAEMWPVIISKKEPMPGYEDRDGEPGKLDKYFSEAPGEG 111


>gi|315122140|ref|YP_004062629.1| putative ferredoxin protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495542|gb|ADR52141.1| putative ferredoxin protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 112

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 93/110 (84%), Positives = 103/110 (93%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCILCKHTDCVEVCPVDCFYEGENFL IHP+ECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTFVVTENCILCKHTDCVEVCPVDCFYEGENFLVIHPEECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE+WL+INS+Y++QWPNITTKK SLP+AA+MDGV+ KYE YFSP P  
Sbjct: 61  PGLEMWLQINSKYSSQWPNITTKKASLPNAAEMDGVENKYENYFSPKPAK 110


>gi|163759999|ref|ZP_02167083.1| ferredoxin II [Hoeflea phototrophica DFL-43]
 gi|162282957|gb|EDQ33244.1| ferredoxin II [Hoeflea phototrophica DFL-43]
          Length = 112

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E WL +N+EYA +WPNIT K+++   A   DG + K+EKYFS  PG  +
Sbjct: 61  PGMEKWLVVNTEYADKWPNITVKRDAPDDAKDFDGTEGKFEKYFSAEPGEGD 112


>gi|83952972|ref|ZP_00961699.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83835634|gb|EAP74936.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 112

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 86/111 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K  KYFS   G  
Sbjct: 61  PDMEEWVEFNRKYSEMWPVIITKKDQLPEAEERDGEEGKLAKYFSEKAGEG 111


>gi|254441817|ref|ZP_05055310.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
 gi|198251895|gb|EDY76210.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
          Length = 133

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 72/111 (64%), Positives = 87/111 (78%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 23  MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 82

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K +  FS  PG  
Sbjct: 83  PDMEKWVEFNLKYSEMWPVIITKKDQLPTAEEMDGKEGKLD-LFSEAPGEG 132


>gi|288957084|ref|YP_003447425.1| ferredoxin [Azospirillum sp. B510]
 gi|288909392|dbj|BAI70881.1| ferredoxin [Azospirillum sp. B510]
          Length = 110

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/110 (65%), Positives = 84/110 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+ CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MPYVVTDGCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                WL++N +Y+ QWPNIT KK++   A    GV  K+EK+FSP  GG
Sbjct: 61  DRATKWLELNRDYSGQWPNITRKKDAPADADTFKGVDGKFEKFFSPKAGG 110


>gi|254293139|ref|YP_003059162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hirschia
           baltica ATCC 49814]
 gi|254041670|gb|ACT58465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hirschia
           baltica ATCC 49814]
          Length = 113

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L I P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYIVIDACIKCKYTDCVEVCPVDCFYEGENMLVIDPEECIDCGVCEPECPAEAIVPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
              +  WLK+N+EYA +WPNIT +K+    A +   VK K   +FS  PG  +
Sbjct: 61  DDKDGKWLKLNTEYAAKWPNITVRKDPPEDADEWSQVKDKLGPHFSEKPGTGD 113


>gi|299134345|ref|ZP_07027538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298591092|gb|EFI51294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 113

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PD++
Sbjct: 1   MTHVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFPDSD 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P  E  WL+ N +YA+ WPNI  KK     A K +GVK K+E YFS  PG  
Sbjct: 61  PAAEPKWLEQNKKYASLWPNIPFKKTPPEDADKWNGVKDKFEPYFSEKPGEG 112


>gi|304321708|ref|YP_003855351.1| hypothetical protein PB2503_10789 [Parvularcula bermudensis
           HTCC2503]
 gi|303300610|gb|ADM10209.1| hypothetical protein PB2503_10789 [Parvularcula bermudensis
           HTCC2503]
          Length = 112

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGENFLAI PDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYVVTDACIACKYTDCVEVCPVDCFYEGENFLAIKPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                W ++N++YA QWPNIT  K +LP A  M  V+ K E +FS  PG  +
Sbjct: 61  DPDGKWTELNAKYAEQWPNITKAKPALPEADAMADVENKLETHFSEKPGEGD 112


>gi|158421856|ref|YP_001523148.1| ferredoxin II [Azorhizobium caulinodans ORS 571]
 gi|158328745|dbj|BAF86230.1| ferredoxin II [Azorhizobium caulinodans ORS 571]
          Length = 111

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 90/112 (80%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCILCK+TDCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTENCILCKYTDCVAVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N+EYA  WPNIT K+++LP A + DG   K +K FS  PG  +
Sbjct: 61  PGLEKWLSLNAEYAKTWPNITLKRDALPDAKEWDGKPGKEDK-FSAEPGTGD 111


>gi|163797038|ref|ZP_02190994.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159177785|gb|EDP62336.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 112

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 84/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VTE CI CK+TDCVEVCPVDCFYEG N L IHPDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYIVTEACIKCKYTDCVEVCPVDCFYEGANMLVIHPDECIDCGVCEPECPPEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
              E WL++N EY+  WPNIT K +++P A  M   K K+E++F   PG  N
Sbjct: 61  TEAEKWLEMNREYSEAWPNITRKIDAMPEADAMQAEKGKFERFFDSGPGQGN 112


>gi|84515405|ref|ZP_01002767.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
 gi|84510688|gb|EAQ07143.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
          Length = 111

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/111 (65%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP A +MDG   K +  FS  PG  
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPGAEEMDGKPGKLD-LFSEAPGEG 110


>gi|310815307|ref|YP_003963271.1| iron-sulfur cluster-binding protein [Ketogulonicigenium vulgare
           Y25]
 gi|308754042|gb|ADO41971.1| iron-sulfur cluster-binding protein [Ketogulonicigenium vulgare
           Y25]
          Length = 111

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/111 (65%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP IT++++ LP   +MDG   K     S NPG  
Sbjct: 61  PDMEKWVEFNRKYSEMWPVITSRRDPLPGYEEMDGKPGKLA-LLSENPGLG 110


>gi|260576850|ref|ZP_05844833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259020887|gb|EEW24200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 112

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 83/111 (74%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVIDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +YA  WP I TKK+ LP A   DG   K   YFS  PG  
Sbjct: 61  PDMDTWVEFNRKYAEMWPVIVTKKDMLPDAEARDGETNKLATYFSEKPGLG 111


>gi|329849717|ref|ZP_08264563.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
 gi|328841628|gb|EGF91198.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
          Length = 112

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 76/112 (67%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK  DCV+VCPVDCFYEGENFL I P  CIDCG+C PECPVDAIKP+ +
Sbjct: 1   MTYVVTDPCIKCKFMDCVDVCPVDCFYEGENFLVIDPAVCIDCGICVPECPVDAIKPEDK 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                WL IN+++   WPNIT K      +A  +    K+EKYFS  PG  +
Sbjct: 61  DTDGKWLAINTQFTAVWPNITRKGTPPADSADFERETGKFEKYFSERPGTGD 112


>gi|83591417|ref|YP_425169.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83574331|gb|ABC20882.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 112

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/111 (61%), Positives = 76/111 (68%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD+E
Sbjct: 1   MPYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                WL+IN ++A  WPNIT K  +L  A        K     S NPG  
Sbjct: 61  AIAGKWLEINRKFADLWPNITRKGPALADADDWKDKPDK-TGLLSENPGKG 110


>gi|209965507|ref|YP_002298422.1| ferredoxin II [Rhodospirillum centenum SW]
 gi|209958973|gb|ACI99609.1| ferredoxin II [Rhodospirillum centenum SW]
          Length = 111

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/110 (65%), Positives = 83/110 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTE CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MPYVVTELCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P  E WL++N EY+T WPN+  KK +   A +  G+  KY K+FSP PG 
Sbjct: 61  PKAEPWLELNREYSTNWPNLNRKKPAPADADEYKGMPDKYAKFFSPKPGE 110


>gi|217977550|ref|YP_002361697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylocella
           silvestris BL2]
 gi|217502926|gb|ACK50335.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylocella
           silvestris BL2]
          Length = 112

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV ENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVLENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E W+ +N++ A  WPNIT K+E+ P A + DG   K++++FSP PG  +
Sbjct: 61  PGIEQWITLNADMAQSWPNITMKREAAPDAKQFDGRPGKFKEFFSPEPGKGD 112


>gi|329848407|ref|ZP_08263435.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
 gi|328843470|gb|EGF93039.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
          Length = 112

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/111 (63%), Positives = 81/111 (72%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDPCVKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                WL+IN++YA  WPNI+ K        + +    KYEKYFS  PG  
Sbjct: 61  DEGTKWLEINTKYAAVWPNISEKGTPPADREEYERETGKYEKYFSEKPGDG 111


>gi|144899570|emb|CAM76434.1| 4Fe-4S ferredoxin, iron-sulfur binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 141

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 78/111 (70%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 30  MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIVPDSD 89

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                W ++N +Y+ QWPNIT K ++   A        K +   SPNPG  
Sbjct: 90  DKAAAWAQLNRDYSGQWPNITRKGDAPADADAWKNKPDKAD-LLSPNPGKG 139


>gi|163746985|ref|ZP_02154342.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380099|gb|EDQ04511.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 111

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 73/111 (65%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E  FS  PG  
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPAAEEMDGKEGKME-LFSEKPGEG 110


>gi|218532108|ref|YP_002422924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|218524411|gb|ACK84996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 112

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/104 (66%), Positives = 81/104 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFY G+  L I+PDECIDCGVCEPECP DAIK DTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYVGDTMLVINPDECIDCGVCEPECPADAIKADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           PGL+ W+ +N++YA  WPNI+ K++ L  AA  DG   K E  F
Sbjct: 61  PGLDGWIALNAKYAALWPNISEKRDPLHDAAAWDGRPGKLESVF 104


>gi|83308697|emb|CAJ01607.1| ferredoxin ii [Methylocapsa acidiphila]
          Length = 112

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV ENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVVENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL+ WL++N + A  WPN+T K+E++P A   DG   K++++FS  PG  +
Sbjct: 61  RGLDKWLELNRDMAKAWPNVTVKREAMPDAKAFDGRPGKFDEFFSAEPGSGD 112


>gi|209886244|ref|YP_002290101.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
 gi|209874440|gb|ACI94236.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
          Length = 113

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/111 (63%), Positives = 82/111 (73%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENC+ CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PD++
Sbjct: 1   MTHVVTENCVKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFPDSD 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P  E  WL+ N +Y+  WPNI  KK     A K +GV  KY++YFS  PG 
Sbjct: 61  PAAEPQWLEQNRKYSAIWPNIPFKKVPPEDADKWNGVPNKYDQYFSEKPGE 111


>gi|83313418|ref|YP_423682.1| ferredoxin II [Magnetospirillum magneticum AMB-1]
 gi|82948259|dbj|BAE53123.1| Ferredoxin II [Magnetospirillum magneticum AMB-1]
          Length = 123

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/109 (63%), Positives = 77/109 (70%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 15  MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSD 74

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P    W   N +YA  WPNIT K ++   A    G   K  K  SPNPG
Sbjct: 75  PKATAWTDTNRQYAGSWPNITRKGDAPADADDWKGKPDK-AKLLSPNPG 122


>gi|253795562|ref|YP_003038658.1| putative Ferredoxin II [Candidatus Hodgkinia cicadicola Dsem]
 gi|253739870|gb|ACT34205.1| putative Ferredoxin II [Candidatus Hodgkinia cicadicola Dsem]
          Length = 160

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEG+NFL I+PDECIDCGVCEPECP  AIK   E
Sbjct: 50  MAYVVTDNCICCKYTDCVEVCPVDCFYEGKNFLVINPDECIDCGVCEPECPAGAIKSARE 109

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           PG+E W ++N+  A  WPNI+ +K  +P A + +GV  K EKYF
Sbjct: 110 PGVEKWAELNARCAKLWPNISRRKPPMPKADEFNGVANKLEKYF 153


>gi|16124907|ref|NP_419471.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|221233628|ref|YP_002516064.1| ferredoxin [Caulobacter crescentus NA1000]
 gi|10719994|sp|Q45972|FER1_CAUCR RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|497275|gb|AAA85787.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|13421869|gb|AAK22639.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|220962800|gb|ACL94156.1| ferredoxin [Caulobacter crescentus NA1000]
          Length = 113

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 82/112 (73%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDACVRCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WLKIN++YA  WPNIT K E        +    K+EKYFS  PG  
Sbjct: 61  DEADGKWLKINADYAKVWPNITVKGEPPADREDFERETGKFEKYFSEKPGKG 112


>gi|197104174|ref|YP_002129551.1| ferredoxin A [Phenylobacterium zucineum HLK1]
 gi|196477594|gb|ACG77122.1| ferredoxin A [Phenylobacterium zucineum HLK1]
          Length = 113

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 82/112 (73%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVMDPCIKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WLK+NSEY+  WPNIT K      A + +    K+EKYFS  PG  
Sbjct: 61  DDPDGKWLKVNSEYSRVWPNITVKGTPPADAEQFERESGKFEKYFSEKPGRG 112


>gi|71083130|ref|YP_265849.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762443|ref|ZP_01264408.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062243|gb|AAZ21246.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718245|gb|EAS84895.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1002]
          Length = 108

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/107 (63%), Positives = 79/107 (73%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK  DCVEVCPVDCFYEG+N L I P+ECIDCGVCEPECPVDAI  DTE
Sbjct: 1   MTYVVNDKCIKCKLMDCVEVCPVDCFYEGKNMLVIKPEECIDCGVCEPECPVDAIVADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
            G E WL++N++Y+  WPNIT KK+      K    + KY+KYFS N
Sbjct: 61  SGSEKWLELNTKYSEIWPNITIKKDPPEDNEKYKNEENKYDKYFSEN 107


>gi|254454463|ref|ZP_05067900.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
 gi|198268869|gb|EDY93139.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
          Length = 111

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/111 (65%), Positives = 87/111 (78%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E  FS  PG  
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQLPNAEEMDGKEDKME-LFSEAPGEG 110


>gi|182680040|ref|YP_001834186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635923|gb|ACB96697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 112

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 83/112 (74%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M+YVV ENCI CK+ DCVEVCPVDCFYEGE  L I+PDECIDCGVCEPECP +AIKPDT 
Sbjct: 1   MSYVVLENCIKCKYMDCVEVCPVDCFYEGETMLVINPDECIDCGVCEPECPAEAIKPDTV 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE W  +N + A  WPN+T K+E+ P A + DG   K++ +F+  PG  +
Sbjct: 61  SGLEKWQALNRKMAQYWPNVTVKREAPPEAKQFDGRPGKFDAFFTETPGQGD 112


>gi|255263563|ref|ZP_05342905.1| ferredoxin-1 [Thalassiobium sp. R2A62]
 gi|255105898|gb|EET48572.1| ferredoxin-1 [Thalassiobium sp. R2A62]
          Length = 111

 Score =  123 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/111 (64%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E  FS   G  
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPNADEMDGKEGKME-LFSEVAGEG 110


>gi|118592843|ref|ZP_01550232.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Stappia aggregata IAM 12614]
 gi|118434613|gb|EAV41265.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Stappia aggregata IAM 12614]
          Length = 108

 Score =  123 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 81/103 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI  DT+
Sbjct: 1   MTFVVTENCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILADTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           P  + W+ +N++YA  WP IT K +++P A   +GV+ K E+ 
Sbjct: 61  PEAQKWIDLNAKYAALWPVITEKIDAMPDAEDWNGVEGKLEQL 103


>gi|89069369|ref|ZP_01156728.1| iron-sulfur cluster-binding protein [Oceanicola granulosus
           HTCC2516]
 gi|89045136|gb|EAR51207.1| iron-sulfur cluster-binding protein [Oceanicola granulosus
           HTCC2516]
          Length = 111

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +YA  WP I TKK+ LP A +MDG   K E  FS   G  
Sbjct: 61  PDVEKWVEFNRKYAEIWPVIITKKDPLPKAEEMDGKSGKLE-LFSEAAGEG 110


>gi|294084640|ref|YP_003551398.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664213|gb|ADE39314.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 112

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 82/112 (73%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PD+E
Sbjct: 1   MTYIVNENCINCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPPEAILPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P    WL +N + +  WPNI  K + +P+A   +    K++KYF+  PG  N
Sbjct: 61  PEATKWLDLNRDMSEIWPNIGQKIDEMPNAKAAESETGKFDKYFTKAPGKGN 112


>gi|154246030|ref|YP_001416988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xanthobacter autotrophicus Py2]
 gi|154160115|gb|ABS67331.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 120

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 77/112 (68%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK  DCV VCPVDCFYEGEN L I+PDECIDCGVCEPECP  AI  DT 
Sbjct: 1   MAYVVTDNCIRCKFMDCVAVCPVDCFYEGENMLVINPDECIDCGVCEPECPAAAIAADTA 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P    W+ +N++YA  WPNI  KKE    AA+   V  K+E  FSP PG  +
Sbjct: 61  PEAGPWIALNAQYAALWPNIAEKKEPPADAAQWMDVADKFESAFSPAPGQAD 112


>gi|295691060|ref|YP_003594753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caulobacter segnis ATCC 21756]
 gi|295432963|gb|ADG12135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caulobacter
           segnis ATCC 21756]
          Length = 113

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 82/112 (73%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDACVRCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WL++N++YA  WPNIT K        + +    K+EKYFS  PG  
Sbjct: 61  DEPDGKWLRVNADYAKVWPNITVKGVPPEDREQFERETGKFEKYFSEKPGKG 112


>gi|302384120|ref|YP_003819943.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194748|gb|ADL02320.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 133

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DC+EVCPVDCFYEGENFLAI PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 21  MTYIVTDACVKCKFMDCIEVCPVDCFYEGENFLAIAPDECIDCGVCEPECPVDAIKPDTE 80

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WL+IN++YA  WPNIT K        + +    K+EKYFSP PG  
Sbjct: 81  DEPDGKWLQINAQYARVWPNITVKGTPPADREQYERETGKFEKYFSPEPGKG 132


>gi|167648072|ref|YP_001685735.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Caulobacter sp. K31]
 gi|167350502|gb|ABZ73237.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caulobacter
           sp. K31]
          Length = 113

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 82/112 (73%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK  DCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP+DAIKPDTE
Sbjct: 1   MTYIVTDACIKCKFMDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPIDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WL+INSEYA  WPNIT K          +    K+EKYFS  PG  
Sbjct: 61  DEPDGKWLRINSEYAKIWPNITVKGVPPADREAFERETGKFEKYFSEKPGKG 112


>gi|83859719|ref|ZP_00953239.1| ferredoxin A [Oceanicaulis alexandrii HTCC2633]
 gi|83852078|gb|EAP89932.1| ferredoxin A [Oceanicaulis alexandrii HTCC2633]
          Length = 111

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/111 (63%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP++AIKPDTE
Sbjct: 1   MTYIVTDACIRCKFTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPIEAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
              +  WL +NS+YAT+WPNIT +K+      + + +  K EKYFS  P  
Sbjct: 61  DDADGKWLALNSKYATEWPNITVRKDPPADYKEFETITNKLEKYFSEKPAS 111


>gi|114799500|ref|YP_762091.1| ferredoxin [Hyphomonas neptunium ATCC 15444]
 gi|114739674|gb|ABI77799.1| ferredoxin [Hyphomonas neptunium ATCC 15444]
          Length = 113

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/113 (63%), Positives = 82/113 (72%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYIVVDACIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
              +  WLK+NS+YA  WPNIT  KE      +      K EKYF+ NPG  +
Sbjct: 61  DDPDGKWLKLNSDYAKVWPNITRMKEPPADREEFAQETGKLEKYFTANPGAGD 113


>gi|329890830|ref|ZP_08269173.1| ferredoxin-2 [Brevundimonas diminuta ATCC 11568]
 gi|328846131|gb|EGF95695.1| ferredoxin-2 [Brevundimonas diminuta ATCC 11568]
          Length = 113

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 81/112 (72%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I PDECIDCGVCEPECPVDAI PDTE
Sbjct: 1   MTYIVTDACVKCKFMDCVEVCPVDCFYEGENFLVIAPDECIDCGVCEPECPVDAIVPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WL++N+EYA  WPNIT K        + +    K+EKYFSP PG  
Sbjct: 61  DEPDGKWLQVNAEYAKVWPNITVKGVPPADREQYERETGKFEKYFSPKPGKG 112


>gi|114326978|ref|YP_744135.1| ferredoxin [Granulibacter bethesdensis CGDNIH1]
 gi|114315152|gb|ABI61212.1| ferredoxin [Granulibacter bethesdensis CGDNIH1]
          Length = 132

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 72/111 (64%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK  DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 23  MAYVVTENCIRCKFMDCVEVCPVDCFYVGENMLVIHPDECIDCGVCEPECPAEAIFPDSD 82

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                W + N  YA+ WPNIT K E    A +      K E  FS  PG  
Sbjct: 83  DRATAWAEKNRTYASVWPNITRKGEPPADAEEWKDKPGKAE-LFSTEPGEP 132


>gi|254419877|ref|ZP_05033601.1| 4Fe-4S binding domain protein [Brevundimonas sp. BAL3]
 gi|196186054|gb|EDX81030.1| 4Fe-4S binding domain protein [Brevundimonas sp. BAL3]
          Length = 113

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 81/112 (72%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I PDECIDCGVCEPECPVDAI PDTE
Sbjct: 1   MTYIVTDACVKCKFMDCVEVCPVDCFYEGENFLVIAPDECIDCGVCEPECPVDAIVPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WL++N+EYA  WPNIT K        + +    KYEKYFSP PG  
Sbjct: 61  DEPDGKWLQVNAEYAKVWPNITVKGTPPADREQYERETGKYEKYFSPKPGKG 112


>gi|89055800|ref|YP_511251.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88865349|gb|ABD56226.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp. CCS1]
          Length = 111

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/111 (63%), Positives = 83/111 (74%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P ++ W++ N +Y+  WP I TKK+ LP+A  MDG   K E  FS   G  
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIITKKDPLPTADDMDGKPGKME-LFSEAAGEG 110


>gi|126733166|ref|ZP_01748913.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126716032|gb|EBA12896.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 111

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/111 (65%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P +E W++ N +Y+  WP I TKK+ LP+A  MDG + K E  FS   G  
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPTADDMDGKEGKME-LFSEAAGEG 110


>gi|23014750|ref|ZP_00054551.1| COG1146: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 109

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/109 (61%), Positives = 78/109 (71%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P    W   N +Y+++WPNIT K ++   A    G   K  K  SP PG
Sbjct: 61  PAAAAWTDTNRQYSSEWPNITRKGDAPADADDWKGKPDK-AKLLSPKPG 108


>gi|142307|gb|AAA16869.1| fdxA [Azotobacter vinelandii]
 gi|20455804|gb|AAM22287.1| ferredoxin A [Azotobacter vinelandii]
          Length = 107

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEP CP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPRCPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 105


>gi|315498121|ref|YP_004086925.1| ferredoxin a [Asticcacaulis excentricus CB 48]
 gi|315416133|gb|ADU12774.1| ferredoxin A [Asticcacaulis excentricus CB 48]
          Length = 113

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 81/112 (72%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDPCVKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WL++NS+YA  WPNI+ K          +    K+EKYFS  PG  
Sbjct: 61  DEPDGKWLEVNSKYARVWPNISVKGTPPADREDFERETGKFEKYFSEKPGDG 112


>gi|121998437|ref|YP_001003224.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121589842|gb|ABM62422.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 107

 Score =  120 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  +  
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIYSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P +E +L++N+E A +WP IT KK+  P A + DG   K +  
Sbjct: 61  LPPSMEHFLELNAELAQKWPLITEKKDPPPDAEEWDGKPDKLQHL 105


>gi|229365481|dbj|BAH57989.1| hypothetical protein [Acetobacter lovaniensis]
          Length = 112

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/108 (63%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 3   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 62

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNIT K      A +      K E   SPNP
Sbjct: 63  DRAAAWAEINAKYATQWPNITRKGTPPADAEEWKDKPNKTE-LLSPNP 109


>gi|258541199|ref|YP_003186632.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01]
 gi|256632277|dbj|BAH98252.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01]
 gi|256635334|dbj|BAI01303.1| ferredoxin [Acetobacter pasteurianus IFO 3283-03]
 gi|256638389|dbj|BAI04351.1| ferredoxin [Acetobacter pasteurianus IFO 3283-07]
 gi|256641443|dbj|BAI07398.1| ferredoxin [Acetobacter pasteurianus IFO 3283-22]
 gi|256644498|dbj|BAI10446.1| ferredoxin [Acetobacter pasteurianus IFO 3283-26]
 gi|256647553|dbj|BAI13494.1| ferredoxin [Acetobacter pasteurianus IFO 3283-32]
 gi|256650606|dbj|BAI16540.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653597|dbj|BAI19524.1| ferredoxin [Acetobacter pasteurianus IFO 3283-12]
          Length = 110

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/108 (63%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNIT K      A +      K E   SPNP
Sbjct: 61  DRAAAWAEINAKYATQWPNITRKGTPPADAEEWKDKPNKTE-LLSPNP 107


>gi|37927462|pdb|1PC5|A Chain A, Crystal Structure Of The P50g Mutant Of Ferredoxin I At
           1.8 A Resolution
          Length = 107

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPEC   AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECGAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 105


>gi|330504210|ref|YP_004381079.1| ferredoxin I [Pseudomonas mendocina NK-01]
 gi|328918496|gb|AEB59327.1| ferredoxin I [Pseudomonas mendocina NK-01]
          Length = 107

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++++N++ A  WPNIT KK++LP A + DGVK K +  
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALPDAEEWDGVKDKLQHL 105


>gi|49089178|gb|AAT51652.1| PA3621 [synthetic construct]
          Length = 108

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|226945907|ref|YP_002800980.1| ferredoxin I [Azotobacter vinelandii DJ]
 gi|119918|sp|P00214|FER1_AZOVI RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|142304|gb|AAA22125.1| ferredoxin I [Azotobacter vinelandii]
 gi|226720834|gb|ACO80005.1| Ferredoxin I [Azotobacter vinelandii DJ]
          Length = 107

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 105


>gi|37927460|pdb|1PC4|A Chain A, Crystal Structure Of The P50a Mutant Of Ferredoxin I At
           1.65 A Resolution
          Length = 107

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPEC   AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECAAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 105


>gi|296537277|ref|ZP_06899163.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
 gi|296262395|gb|EFH09134.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
          Length = 110

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1   MAYVVTENCIRCKYMDCVEVCPVDCFYVGENMLVIHPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                W ++N  Y+ QWPNIT K E+   A   +G   K    F P PG  
Sbjct: 61  DKAADWAELNRTYSQQWPNITRKGEAPEDAEAWNGKPDKKA-LFDPKPGEP 110


>gi|15598817|ref|NP_252311.1| ferredoxin I [Pseudomonas aeruginosa PAO1]
 gi|116051618|ref|YP_789543.1| ferredoxin I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152985024|ref|YP_001346902.1| ferredoxin I [Pseudomonas aeruginosa PA7]
 gi|296387875|ref|ZP_06877350.1| ferredoxin I [Pseudomonas aeruginosa PAb1]
 gi|313108980|ref|ZP_07794955.1| ferredoxin I [Pseudomonas aeruginosa 39016]
 gi|81783634|sp|Q9HY07|FER1_PSEAE RecName: Full=Ferredoxin 1
 gi|9949779|gb|AAG07009.1|AE004782_7 ferredoxin I [Pseudomonas aeruginosa PAO1]
 gi|115586839|gb|ABJ12854.1| ferredoxin I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150960182|gb|ABR82207.1| ferredoxin I [Pseudomonas aeruginosa PA7]
 gi|310881457|gb|EFQ40051.1| ferredoxin I [Pseudomonas aeruginosa 39016]
          Length = 107

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|107103135|ref|ZP_01367053.1| hypothetical protein PaerPA_01004204 [Pseudomonas aeruginosa PACS2]
 gi|218890154|ref|YP_002439018.1| ferredoxin I [Pseudomonas aeruginosa LESB58]
 gi|254236536|ref|ZP_04929859.1| ferredoxin I [Pseudomonas aeruginosa C3719]
 gi|254242319|ref|ZP_04935641.1| ferredoxin I [Pseudomonas aeruginosa 2192]
 gi|126168467|gb|EAZ53978.1| ferredoxin I [Pseudomonas aeruginosa C3719]
 gi|126195697|gb|EAZ59760.1| ferredoxin I [Pseudomonas aeruginosa 2192]
 gi|218770377|emb|CAW26142.1| ferredoxin I [Pseudomonas aeruginosa LESB58]
          Length = 107

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEIWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|311693936|gb|ADP96809.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [marine
           bacterium HP15]
          Length = 119

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 13  MAFIVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 72

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   ++++N++ A +WPNIT KK+ LP A + DG   K +
Sbjct: 73  LPADQVQFVELNADLAAKWPNITEKKDPLPDAEEWDGKPNKLQ 115


>gi|329114808|ref|ZP_08243565.1| Ferredoxin-2 [Acetobacter pomorum DM001]
 gi|326695939|gb|EGE47623.1| Ferredoxin-2 [Acetobacter pomorum DM001]
          Length = 112

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/108 (62%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 3   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 62

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNIT K      A +      K E   SP+P
Sbjct: 63  DRAAAWAEINAKYATQWPNITRKGTPPADAEEWKDKPNKTE-LLSPDP 109


>gi|307546338|ref|YP_003898817.1| ferredoxin [Halomonas elongata DSM 2581]
 gi|307218362|emb|CBV43632.1| K05524 ferredoxin [Halomonas elongata DSM 2581]
          Length = 107

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E +++IN+E +  WPNIT KK+    A + DG   K E  
Sbjct: 61  LPEGQEQFIEINAELSETWPNITEKKDPPEDAEEWDGKTGKLEHL 105


>gi|92112753|ref|YP_572681.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91795843|gb|ABE57982.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 107

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++++N+E +  WPNI+ KK+ LP A + DG   K +  
Sbjct: 61  LPDDQKAFIELNAELSEVWPNISEKKDPLPDAEEWDGKTDKLQHL 105


>gi|126726969|ref|ZP_01742807.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
 gi|126703641|gb|EBA02736.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
          Length = 111

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/110 (64%), Positives = 80/110 (72%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVSVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            G E WLK+N+E A QWP I  + +    A +  G + K+ +  S  P  
Sbjct: 61  SGHETWLKLNAELAEQWPVIDEQIDPPADADQWLGKQNKWTEL-SREPAA 109


>gi|256822660|ref|YP_003146623.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Kangiella koreensis DSM 16069]
 gi|256796199|gb|ACV26855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kangiella
           koreensis DSM 16069]
          Length = 107

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  +  
Sbjct: 1   MAFVVTDNCIQCKYTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPAEAIFEEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E + +WPNIT KK+ LP A + DG   K E  
Sbjct: 61  IPAGMEHFIELNAELSEEWPNITEKKDPLPDAEEWDGKPNKLEHL 105


>gi|157834956|pdb|2FD2|A Chain A, Crystallographic Analysis Of Two Site-Directed Mutants Of
           Azotobacter Vinelandii Ferredoxin
          Length = 106

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVD FYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDAFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|57908873|gb|AAW59366.1| ferredoxin A [Azotobacter salinestris]
          Length = 107

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KKE+LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKEALPDAEDWDGVKGKLQHL 105


>gi|114320642|ref|YP_742325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227036|gb|ABI56835.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 107

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  +  
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIYSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E +L +N+E A +WP IT +K+    A + DG   K E  
Sbjct: 61  LPAGQEEFLALNAELAQEWPVITEQKDPPEDADEWDGKPNKLELL 105


>gi|58257339|gb|AAK30050.2| ferredoxin [Pseudomonas fluorescens]
          Length = 107

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV++CPVDCFY+G NFL IHPDECIDC +CEP CP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVKICPVDCFYKGPNFLVIHPDECIDCALCEPRCPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P ++ ++++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  VPPDMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 105


>gi|158424426|ref|YP_001525718.1| ferredoxin [Azorhizobium caulinodans ORS 571]
 gi|158331315|dbj|BAF88800.1| ferredoxin [Azorhizobium caulinodans ORS 571]
          Length = 109

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/110 (59%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+ CI CK+ DCV VCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MAYVVTDGCIRCKYMDCVSVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P    WL +N+EYA  WPNIT K E    A    G   K      P P  
Sbjct: 61  PRAGEWLALNAEYAATWPNITEKGEPPADADDWKGKAGKLA-LLDPAPAA 109


>gi|15640822|ref|NP_230453.1| ferredoxin [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585764|ref|ZP_01675559.1| ferredoxin [Vibrio cholerae 2740-80]
 gi|121725986|ref|ZP_01679285.1| ferredoxin [Vibrio cholerae V52]
 gi|147673974|ref|YP_001216287.1| ferredoxin [Vibrio cholerae O395]
 gi|153800583|ref|ZP_01955169.1| ferredoxin [Vibrio cholerae MZO-3]
 gi|153817247|ref|ZP_01969914.1| ferredoxin [Vibrio cholerae NCTC 8457]
 gi|153821403|ref|ZP_01974070.1| ferredoxin [Vibrio cholerae B33]
 gi|153824599|ref|ZP_01977266.1| ferredoxin [Vibrio cholerae MZO-2]
 gi|153828258|ref|ZP_01980925.1| ferredoxin [Vibrio cholerae 623-39]
 gi|227080983|ref|YP_002809534.1| ferredoxin [Vibrio cholerae M66-2]
 gi|229505581|ref|ZP_04395091.1| ferredoxin [Vibrio cholerae BX 330286]
 gi|229510747|ref|ZP_04400226.1| ferredoxin [Vibrio cholerae B33]
 gi|229513058|ref|ZP_04402524.1| ferredoxin [Vibrio cholerae TMA 21]
 gi|229517868|ref|ZP_04407312.1| ferredoxin [Vibrio cholerae RC9]
 gi|229525447|ref|ZP_04414852.1| ferredoxin [Vibrio cholerae bv. albensis VL426]
 gi|229530070|ref|ZP_04419460.1| ferredoxin [Vibrio cholerae 12129(1)]
 gi|229608599|ref|YP_002879247.1| ferredoxin [Vibrio cholerae MJ-1236]
 gi|254285518|ref|ZP_04960482.1| ferredoxin [Vibrio cholerae AM-19226]
 gi|254847941|ref|ZP_05237291.1| ferredoxin [Vibrio cholerae MO10]
 gi|258627223|ref|ZP_05722011.1| Ferredoxin [Vibrio mimicus VM603]
 gi|297581203|ref|ZP_06943127.1| ferredoxin [Vibrio cholerae RC385]
 gi|298499064|ref|ZP_07008871.1| ferredoxin [Vibrio cholerae MAK 757]
 gi|9655253|gb|AAF93968.1| ferredoxin [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550127|gb|EAX60143.1| ferredoxin [Vibrio cholerae 2740-80]
 gi|121631468|gb|EAX63838.1| ferredoxin [Vibrio cholerae V52]
 gi|124123872|gb|EAY42615.1| ferredoxin [Vibrio cholerae MZO-3]
 gi|126512163|gb|EAZ74757.1| ferredoxin [Vibrio cholerae NCTC 8457]
 gi|126521113|gb|EAZ78336.1| ferredoxin [Vibrio cholerae B33]
 gi|146315857|gb|ABQ20396.1| ferredoxin [Vibrio cholerae O395]
 gi|148876212|gb|EDL74347.1| ferredoxin [Vibrio cholerae 623-39]
 gi|149741817|gb|EDM55846.1| ferredoxin [Vibrio cholerae MZO-2]
 gi|150424380|gb|EDN16317.1| ferredoxin [Vibrio cholerae AM-19226]
 gi|227008871|gb|ACP05083.1| ferredoxin [Vibrio cholerae M66-2]
 gi|227012628|gb|ACP08838.1| ferredoxin [Vibrio cholerae O395]
 gi|229333844|gb|EEN99330.1| ferredoxin [Vibrio cholerae 12129(1)]
 gi|229339028|gb|EEO04045.1| ferredoxin [Vibrio cholerae bv. albensis VL426]
 gi|229344583|gb|EEO09557.1| ferredoxin [Vibrio cholerae RC9]
 gi|229349951|gb|EEO14905.1| ferredoxin [Vibrio cholerae TMA 21]
 gi|229350712|gb|EEO15653.1| ferredoxin [Vibrio cholerae B33]
 gi|229357804|gb|EEO22721.1| ferredoxin [Vibrio cholerae BX 330286]
 gi|229371254|gb|ACQ61677.1| ferredoxin [Vibrio cholerae MJ-1236]
 gi|254843646|gb|EET22060.1| ferredoxin [Vibrio cholerae MO10]
 gi|258580525|gb|EEW05486.1| Ferredoxin [Vibrio mimicus VM603]
 gi|297534519|gb|EFH73356.1| ferredoxin [Vibrio cholerae RC385]
 gi|297543397|gb|EFH79447.1| ferredoxin [Vibrio cholerae MAK 757]
 gi|327483585|gb|AEA77992.1| ferredoxin [Vibrio cholerae LMA3894-4]
          Length = 107

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 +++++N+E A  WPN+T  K ++  AAK DGV  K +
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLD 103


>gi|146281878|ref|YP_001172031.1| ferredoxin I [Pseudomonas stutzeri A1501]
 gi|147744561|sp|P08811|FER_PSEST RecName: Full=Ferredoxin 1
 gi|145570083|gb|ABP79189.1| ferredoxin I [Pseudomonas stutzeri A1501]
 gi|327480121|gb|AEA83431.1| ferredoxin I [Pseudomonas stutzeri DSM 4166]
          Length = 107

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N++ A  WPNIT KK++L  A + DGVK K +
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQ 103


>gi|157831124|pdb|1FRK|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|50250469|emb|CAH03855.1| Ferredoxin I [Pseudomonas stutzeri]
          Length = 106

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 78/104 (75%), Gaps = 2/104 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
                + ++++N++ A  WPNIT KK++L  A + DGVK K + 
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQP 104


>gi|157831121|pdb|1FRH|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            YVVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AYVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|332304879|ref|YP_004432730.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172208|gb|AEE21462.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 130

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +CEPECP  AI  D  
Sbjct: 24  MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCALCEPECPAKAIYQDDK 83

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E + ++N+E +  WPNI         A + DGV  K E
Sbjct: 84  LPAGQEAFNELNAELSKIWPNIIEVIPPPADAKEWDGVPNKLE 126


>gi|198283633|ref|YP_002219954.1| hypothetical protein Lferr_1523 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666844|ref|YP_002426259.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248154|gb|ACH83747.1| Protein of unknown function DUF1971 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519057|gb|ACK79643.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 206

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVTE CILCK+TDCV VCPVDCF+EG NFLAI PDECIDC +C  ECPVDAI  D  
Sbjct: 1   MTHVVTEACILCKYTDCVTVCPVDCFHEGPNFLAIDPDECIDCTLCVSECPVDAIFRDVD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G+E + ++N+  A +WP I  KK +LP A +   V+ K 
Sbjct: 61  LPNGMEEYPELNARLARRWPVIIQKKPALPDAEQWRHVRDKR 102


>gi|10120847|pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of Azotobacter
           Vinelandii 7fe Ferredoxin (Fdi)
          Length = 106

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECID  +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDDALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|11513606|pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
          Length = 106

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CE ECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCESECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|238027280|ref|YP_002911511.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia glumae BGR1]
 gi|237876474|gb|ACR28807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           glumae BGR1]
          Length = 111

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/105 (65%), Positives = 82/105 (78%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CKHTDCV+VCPVDCF+EGENFLAI PDECIDCGVCEPECPVDAI+ D+ 
Sbjct: 1   MTYVVTENCIQCKHTDCVDVCPVDCFHEGENFLAIDPDECIDCGVCEPECPVDAIRQDSA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P   ++L +N E A  WP+IT+K+ +LP AA+   V+ K E  
Sbjct: 61  LAPEQRIFLDLNRELAQNWPSITSKRAALPDAARWKDVEGKLEHL 105


>gi|167589295|ref|ZP_02381683.1| ferredoxin [Burkholderia ubonensis Bu]
          Length = 111

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVVTENCI CKHTDCVEVCPVDCF+EGENFL I PDECIDCGVCEPECPV AI+ D  
Sbjct: 1   MAYVVTENCINCKHTDCVEVCPVDCFHEGENFLVIDPDECIDCGVCEPECPVGAIRQDVA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +     +  +N E A  WP +T +K +LP AA+   V+ K+++ 
Sbjct: 61  LDADQVHYASLNRELAQSWPTLTIRKPALPDAAQWKDVEGKFQQL 105


>gi|255021900|ref|ZP_05293910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968724|gb|EET26276.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus caldus ATCC 51756]
          Length = 206

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVTE+CI CK+TDCV VCPVDCF+EG NFL I P ECIDC +C  ECPVDAI  D  
Sbjct: 1   MTHVVTESCIQCKYTDCVTVCPVDCFHEGPNFLVIDPCECIDCTLCVAECPVDAIFRDVD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +L++N++ A  WP I  KK +LP A +   V  K E
Sbjct: 61  MPDGSEGYLELNAQLAQIWPVIIQKKAALPEAERWRHVMPKRE 103


>gi|170745425|ref|YP_001766882.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659026|gb|ACB28080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 112

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/104 (67%), Positives = 75/104 (72%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFY GE  L I PDECIDCGVCEPECP DAIK DTE
Sbjct: 1   MTYVVTENCIRCKYTDCVEVCPVDCFYVGETMLVIDPDECIDCGVCEPECPADAIKADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           PGLE W   N++YA  WPNI  K +    AA+ DG   K    F
Sbjct: 61  PGLEGWKAFNAKYAALWPNIAEKVDPAADAAEWDGRDGKLIAVF 104


>gi|53803364|ref|YP_114883.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
 gi|53757125|gb|AAU91416.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
          Length = 107

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF+EG NFL I PDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAHAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++++N+E +  WP+I+  KE+LP A + +G   K +
Sbjct: 61  LPEGQEQFIQLNAELSKIWPSISEVKEALPDADEWNGKPDKLQ 103


>gi|157830133|pdb|1AXQ|A Chain A, Ferricyanide Oxidized Fdi
 gi|157831044|pdb|1FDA|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|157831045|pdb|1FDB|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|157831059|pdb|1FER|A Chain A, Structure At Ph 6.5 Of Ferredoxin I From Azotobacter
           Vinelandii At 2.3 Angstroms Resolution
 gi|157837034|pdb|5FD1|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|225734355|pdb|6FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii Low
           Temperature, 1.35 A
          Length = 106

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|157831126|pdb|1FRM|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +C PECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCAPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|296112737|ref|YP_003626675.1| ferredoxin 1 [Moraxella catarrhalis RH4]
 gi|295920431|gb|ADG60782.1| ferredoxin 1 [Moraxella catarrhalis RH4]
 gi|326560986|gb|EGE11351.1| ferredoxin 1 [Moraxella catarrhalis 7169]
 gi|326563774|gb|EGE14025.1| ferredoxin 1 [Moraxella catarrhalis 46P47B1]
 gi|326563977|gb|EGE14227.1| ferredoxin 1 [Moraxella catarrhalis 12P80B1]
 gi|326566788|gb|EGE16927.1| ferredoxin 1 [Moraxella catarrhalis 103P14B1]
 gi|326567369|gb|EGE17484.1| ferredoxin 1 [Moraxella catarrhalis BC1]
 gi|326569888|gb|EGE19938.1| ferredoxin 1 [Moraxella catarrhalis BC8]
 gi|326571504|gb|EGE21519.1| ferredoxin 1 [Moraxella catarrhalis BC7]
 gi|326575213|gb|EGE25141.1| ferredoxin 1 [Moraxella catarrhalis CO72]
 gi|326576701|gb|EGE26608.1| ferredoxin 1 [Moraxella catarrhalis 101P30B1]
 gi|326577625|gb|EGE27502.1| ferredoxin 1 [Moraxella catarrhalis O35E]
          Length = 107

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +LKIN E +  WPNIT KK++LP   K DGV+ K +
Sbjct: 61  VPSGQEEFLKINEELSAVWPNITEKKDALPDYEKWDGVEGKLQ 103


>gi|149911417|ref|ZP_01900035.1| putative ferredoxin [Moritella sp. PE36]
 gi|149805525|gb|EDM65530.1| putative ferredoxin [Moritella sp. PE36]
          Length = 107

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CKH DCV VCP D F+EG NFL I P  CIDCG+C PECPVDAI  + E
Sbjct: 1   MAFVVTENCIKCKHGDCVPVCPADAFHEGPNFLVIDPIACIDCGLCVPECPVDAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +++++IN E +  WP IT K E    A   DGV+ K 
Sbjct: 61  VPEDQQVFIEINEELSELWPVITEKCEPPADADDWDGVENKL 102


>gi|296115139|ref|ZP_06833780.1| ferredoxin [Gluconacetobacter hansenii ATCC 23769]
 gi|295978240|gb|EFG84977.1| ferredoxin [Gluconacetobacter hansenii ATCC 23769]
          Length = 110

 Score =  117 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/108 (61%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVISPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YA  WPNIT K ++   A +      K E   SP P
Sbjct: 61  DRATAWAEINAKYAGVWPNITRKGDAPADAEEWKDKPNKAE-LLSPEP 107


>gi|157831122|pdb|1FRI|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPV+CFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVNCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|70728590|ref|YP_258339.1| ferredoxin [Pseudomonas fluorescens Pf-5]
 gi|68342889|gb|AAY90495.1| ferredoxin [Pseudomonas fluorescens Pf-5]
          Length = 107

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 105


>gi|40062704|gb|AAR37617.1| ferredoxin [uncultured marine bacterium 314]
          Length = 113

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 70/114 (61%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK  DCV+VCPVDCFYEGEN LAI PDECIDCGVCEPECP+DAIKPDT+
Sbjct: 1   MTYIVNDNCIKCKLMDCVDVCPVDCFYEGENMLAIKPDECIDCGVCEPECPIDAIKPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKK--ESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            G   W++ N++Y   WPNIT K+  +      K  GVK K  KYFS  PG  +
Sbjct: 61  EGASDWVEHNTKYGDLWPNITKKRSEDVPHDQEKWRGVKDKL-KYFSEKPGKGD 113


>gi|312795504|ref|YP_004028426.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
 gi|312167279|emb|CBW74282.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
          Length = 131

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 25  MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 84

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++++N+E A  WP+IT  K  LP A +   VK K +  
Sbjct: 85  VPGDQQQFIQLNAELAKDWPSITRTKPPLPDAVEWKDVKDKLKLL 129


>gi|258619992|ref|ZP_05715032.1| Ferredoxin [Vibrio mimicus VM573]
 gi|258587725|gb|EEW12434.1| Ferredoxin [Vibrio mimicus VM573]
          Length = 107

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 +++++N+E A  WPN+T  K ++  A+K DGV  K +
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEEASKWDGVPNKLD 103


>gi|312959253|ref|ZP_07773771.1| ferredoxin [Pseudomonas fluorescens WH6]
 gi|311286513|gb|EFQ65076.1| ferredoxin [Pseudomonas fluorescens WH6]
          Length = 107

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N E A  WPNIT +K+ +P AA+ DG   K E+ 
Sbjct: 61  VPAGMEQFIQLNVELAEVWPNITERKDPMPDAAEWDGKPNKIEQL 105


>gi|157831125|pdb|1FRL|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPD CIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDSCIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|157831046|pdb|1FDD|A Chain A, Azotobacter Vinelandii Ferredoxin I: Aspartate 15
           Facilitates Proton Transfer To The Reduced [3fe-4s]
           Cluster
          Length = 106

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T+CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTNCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|229523379|ref|ZP_04412786.1| ferredoxin [Vibrio cholerae TM 11079-80]
 gi|229339742|gb|EEO04757.1| ferredoxin [Vibrio cholerae TM 11079-80]
          Length = 107

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 +++++N+E A  WPN+T  K ++  A K DGV  K +
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEDAVKWDGVPNKLD 103


>gi|157884757|pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
           Dithionite Reduced At Ph 8.5, Resolution 1.4 A
 gi|157884763|pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5, 100
           K, 1.35 A
 gi|157884764|pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na Dithionite
           Reduced, Ph 8.5, 1.4a Resolution, 100 K
          Length = 106

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|90020902|ref|YP_526729.1| RecA DNA recombination protein [Saccharophagus degradans 2-40]
 gi|89950502|gb|ABD80517.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 107

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV +NCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGDNCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + +L++N+E A  WPNIT KK++   A + DGV+ K +
Sbjct: 61  LPDDQQAFLELNAELAEVWPNITEKKDAPADAEEWDGVEGKLQ 103


>gi|157831123|pdb|1FRJ|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDC YEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCIYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|120555004|ref|YP_959355.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinobacter aquaeolei VT8]
 gi|120324853|gb|ABM19168.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Marinobacter
           aquaeolei VT8]
          Length = 107

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MAFIVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  PG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E +++IN+E A +WPNIT KK+ LP A + DG   K +
Sbjct: 61  LPAGQEAFVEINAELAGKWPNITEKKDPLPDAEEWDGKPDKLK 103


>gi|12084520|pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084521|pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084522|pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084523|pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
          Length = 106

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC  CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCASCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|9256973|pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
           Azotobacter Vinelandii At 1.75 Angstrom Resolution
          Length = 106

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AHVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|146308040|ref|YP_001188505.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina ymp]
 gi|145576241|gb|ABP85773.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pseudomonas
           mendocina ymp]
          Length = 107

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/103 (61%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NC+ CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCVKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N++ A  WPNIT KKE+LP A + DGVK K +
Sbjct: 61  VPEDMQEYIELNADLAEVWPNITEKKEALPDAEEWDGVKDKLQ 103


>gi|153872043|ref|ZP_02001049.1| 4Fe-4S ferredoxin, iron-sulfur binding [Beggiatoa sp. PS]
 gi|152071489|gb|EDN68949.1| 4Fe-4S ferredoxin, iron-sulfur binding [Beggiatoa sp. PS]
          Length = 109

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCILCK+TDC+EVCPVDCF+EG NFL I P+ECIDC +CEPECP  AI  +  
Sbjct: 1   MAFVVTENCILCKYTDCIEVCPVDCFHEGPNFLVIDPEECIDCTLCEPECPAKAIYSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + +++IN++ + +WP IT +K+  P A + DG   K +
Sbjct: 61  LPSEQQHFVQINADLSQKWPVITERKDPPPDAEQWDGKPDKLQ 103


>gi|157376399|ref|YP_001474999.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157318773|gb|ABV37871.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 107

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVT+NCI CK+TDCV VCPVD F+EG NFLAI+P+ CIDC +C PEC   AI  +  
Sbjct: 1   MAFVVTDNCIRCKYTDCVAVCPVDAFHEGPNFLAINPEVCIDCDLCVPECAAQAIFQEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
              G+E +L++N+E A  WP IT  KE+   A + DGVK K E   
Sbjct: 61  LPEGMEQYLELNAELAQIWPVITEVKEAPADAEEWDGVKNKREHLI 106


>gi|332717239|ref|YP_004444705.1| Ferredoxin [Agrobacterium sp. H13-3]
 gi|325063924|gb|ADY67614.1| Ferredoxin [Agrobacterium sp. H13-3]
          Length = 111

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M+YVVTENCI CK+ DCVEVCPV+CFY GEN L IHPD+CIDCG+CE ECP  AI+PDTE
Sbjct: 1   MSYVVTENCIACKYMDCVEVCPVECFYAGENMLVIHPDQCIDCGICERECPAAAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL +WL +N  Y+  WP +  K+     A  M+G   K+   FS NPG  +
Sbjct: 61  AGLHVWLDLNRHYSGIWPRVHQKRTPPDDADIMNGAAAKFS-IFSKNPGAGD 111


>gi|110834671|ref|YP_693530.1| ferredoxin, 4Fe-4S [Alcanivorax borkumensis SK2]
 gi|110647782|emb|CAL17258.1| ferredoxin, 4Fe-4S [Alcanivorax borkumensis SK2]
          Length = 107

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/107 (61%), Positives = 79/107 (73%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEGENFL IHPDECIDC +CEPECPV+AI  + E
Sbjct: 1   MTFVVGENCINCKHTDCVEVCPVDCFYEGENFLVIHPDECIDCALCEPECPVNAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + +L+IN++ A +WPNIT  K++   A + DGV  K EK   
Sbjct: 61  LPDDQQDFLEINADLAEKWPNITEMKDAPDDAEEWDGVPNKREKLIR 107


>gi|157829710|pdb|1A6L|A Chain A, T14c Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+ DCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYCDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|2098504|pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
 gi|2098505|pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKXTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|94501247|ref|ZP_01307769.1| ferredoxin [Oceanobacter sp. RED65]
 gi|94426674|gb|EAT11660.1| ferredoxin [Oceanobacter sp. RED65]
          Length = 107

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/105 (61%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  PG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                E ++++N+E A +WPNIT  K+ LP A + DGV+ K E  
Sbjct: 61  LPAGQEKFIELNAELAEEWPNITEMKDKLPDAEEWDGVEGKIEHL 105


>gi|170723212|ref|YP_001750900.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas putida W619]
 gi|169761215|gb|ACA74531.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
           putida W619]
          Length = 107

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E +L++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  VPAGMENFLELNAELAEIWPNITERKDALPDAEEWDGKPGKIADL 105


>gi|26988357|ref|NP_743782.1| ferrodoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|148549359|ref|YP_001269461.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas putida F1]
 gi|60392274|sp|P0A122|FER1_PSEPK RecName: Full=Ferredoxin 1
 gi|60392275|sp|P0A123|FER1_PSEPU RecName: Full=Ferredoxin 1
 gi|24983108|gb|AAN67246.1|AE016351_8 ferrodoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|7243294|dbj|BAA92688.1| ferrodoxin [Pseudomonas putida]
 gi|14646832|dbj|BAB62000.1| [3Fe-4S][4Fe-4S]ferredoxin [Pseudomonas putida]
 gi|148513417|gb|ABQ80277.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pseudomonas
           putida F1]
 gi|313500208|gb|ADR61574.1| FdxA [Pseudomonas putida BIRD-1]
          Length = 107

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  VPSGMENFIELNAELAEIWPNITERKDALPDAEEWDGKPGKIADL 105


>gi|9256974|pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
           Azotobacter Vinelandii At 1.75 Angstrom Resolution
          Length = 106

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDC YEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCHYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|157872416|pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
           Azotobacter Vinelandii At 1.7 Angstrom Resolution
          Length = 106

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T+CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTECVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|326794018|ref|YP_004311838.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinomonas mediterranea MMB-1]
 gi|326544782|gb|ADZ90002.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinomonas mediterranea MMB-1]
          Length = 107

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFIVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPAGAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E+++++N + A  WPNI  +K+ LP AA+ DGV+ K E  
Sbjct: 61  LPEGQEVFIELNQDLALIWPNIAERKDPLPDAAQWDGVEDKLEHL 105


>gi|58040345|ref|YP_192309.1| ferredoxin [Gluconobacter oxydans 621H]
 gi|58002759|gb|AAW61653.1| Ferredoxin [Gluconobacter oxydans 621H]
          Length = 110

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/108 (61%), Positives = 80/108 (74%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK TDCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFTDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W++IN++Y+TQWPN+T K +++P A +      K     S  P
Sbjct: 61  NRAAPWIEINAKYSTQWPNMTRKIDAMPDAEEWKDKPGK-AAMLSEAP 107


>gi|33150233|gb|AAP97087.1| ferredoxin [Pseudomonas chlororaphis]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/105 (61%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N E A  WPNIT KK+SLP A + DGVK K +  
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKDSLPDAEEWDGVKGKIKDL 105


>gi|148653815|ref|YP_001280908.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Psychrobacter sp. PRwf-1]
 gi|148572899|gb|ABQ94958.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Psychrobacter sp. PRwf-1]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++++N+E A +WPNIT  K  LP A K DGV+ K +
Sbjct: 61  VPKGQEEFIELNAELAEEWPNITEMKGQLPDAEKWDGVEGKIQ 103


>gi|5305131|emb|CAB46192.1| ferrodoxin [Pseudomonas putida]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  VPSGMENFIELNAELAEIWPNITERKDALPDAEEWDGKTGKIADL 105


>gi|148260834|ref|YP_001234961.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|326404228|ref|YP_004284310.1| ferredoxin [Acidiphilium multivorum AIU301]
 gi|146402515|gb|ABQ31042.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
 gi|325051090|dbj|BAJ81428.1| ferredoxin [Acidiphilium multivorum AIU301]
          Length = 110

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 69/111 (62%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTE+CI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1   MAYVVTESCIKCKYMDCVEVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              + W+  N E A  WPNIT K      A        K     S  PG  
Sbjct: 61  AKADAWIDQNRELAALWPNITRKGTPPEDADAWKDRPGKAASL-SREPGTP 110


>gi|162147815|ref|YP_001602276.1| ferredoxin [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542438|ref|YP_002274667.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786392|emb|CAP55974.1| putative ferredoxin [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530115|gb|ACI50052.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 110

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/108 (59%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN+ Y+ +WPNIT K  +   A +      K +   SP P
Sbjct: 61  DRAAAWAEINASYSAKWPNITRKGTAPADAEEWKDKPGKKD-LLSPEP 107


>gi|330807813|ref|YP_004352275.1| ferredoxin I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375921|gb|AEA67271.1| ferredoxin I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  VPAGMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 105


>gi|149374516|ref|ZP_01892290.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
 gi|149361219|gb|EDM49669.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/103 (58%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   ++++N++ A +WPNIT KK+ LP A + DG   K +
Sbjct: 61  LPADQVQFVELNADLAGKWPNITEKKDPLPEAEEWDGKPDKLQ 103


>gi|104783163|ref|YP_609661.1| ferredoxin [Pseudomonas entomophila L48]
 gi|95112150|emb|CAK16877.1| ferredoxin [Pseudomonas entomophila L48]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  VPAGMENFIELNAELAEIWPNITEKKDALPDAEEWDGKPGKIADL 105


>gi|167032191|ref|YP_001667422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas putida GB-1]
 gi|166858679|gb|ABY97086.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
           putida GB-1]
          Length = 107

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  IPAGMENFIELNAELAEVWPNITERKDALPDAEEWDGKTGKIADL 105


>gi|329896375|ref|ZP_08271474.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC3088]
 gi|328921795|gb|EGG29166.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC3088]
          Length = 107

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEDCINCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +++L++N+E A  WPNIT  K++LP A +  G   K 
Sbjct: 61  LPEDQQVFLELNAELAEIWPNITEMKDALPDAEEWAGKSNKL 102


>gi|171463171|ref|YP_001797284.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192709|gb|ACB43670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 107

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTYVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCVPECPVNAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++K+N+E +  W +IT  K +LP A +   VK K ++   
Sbjct: 61  VPGDQQSFIKLNAELSPSWTSITKSKAALPDAEEWKDVKNKLDQLVK 107


>gi|77457360|ref|YP_346865.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas fluorescens
           Pf0-1]
 gi|77381363|gb|ABA72876.1| ferredoxin I [Pseudomonas fluorescens Pf0-1]
          Length = 107

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N E A  WPNIT KKESLP A + DGVK K +  
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKESLPDAEEWDGVKGKIKDL 105


>gi|254245946|ref|ZP_04939267.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
           PC184]
 gi|124870722|gb|EAY62438.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
           PC184]
          Length = 134

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 28  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 87

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 88  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQDKLHLL 132


>gi|254786793|ref|YP_003074222.1| ferredoxin-1 [Teredinibacter turnerae T7901]
 gi|237685053|gb|ACR12317.1| ferredoxin-1 [Teredinibacter turnerae T7901]
          Length = 107

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  PG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E +L++N+E A  WPNIT KKE+   A + DGV+ K +
Sbjct: 61  LPSDQEAFLELNAELAEVWPNITEKKEAPADAEEWDGVEGKLQ 103


>gi|331006208|ref|ZP_08329530.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC1989]
 gi|330419965|gb|EGG94309.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC1989]
          Length = 107

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP DAI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPADAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E++L++N+E A  WPNIT  KE+   A + DGV+ K +  
Sbjct: 61  LPEGQEVFLELNAELAETWPNITEMKEAPADAEEWDGVEGKLQHL 105


>gi|149187260|ref|ZP_01865558.1| ferredoxin [Vibrio shilonii AK1]
 gi|148838796|gb|EDL55735.1| ferredoxin [Vibrio shilonii AK1]
          Length = 107

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D FYEG NF+ I P +CIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFYEGPNFMVISPIDCIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WPNIT  K ++  A K +GV  K 
Sbjct: 61  LTEDQQVFIELNAELAEVWPNITEVKPAMDEAEKWNGVPNKL 102


>gi|148262070|ref|YP_001236197.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|326405582|ref|YP_004285664.1| ferredoxin [Acidiphilium multivorum AIU301]
 gi|146403751|gb|ABQ32278.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
 gi|325052444|dbj|BAJ82782.1| ferredoxin [Acidiphilium multivorum AIU301]
          Length = 110

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/108 (61%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W++ N E+AT WPN+T K      A +      K E  FSP P
Sbjct: 61  GKASAWIEKNREFATLWPNMTRKGTPPADADEWKDRDGKAE-LFSPEP 107


>gi|6980482|pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980483|pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980484|pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980485|pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDEC DC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECNDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|9622249|gb|AAF89693.1|AF170100_1 ferredoxin A [Pseudomonas aeruginosa]
          Length = 107

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI  +   CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIQVQIHHCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|257094884|ref|YP_003168525.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047408|gb|ACV36596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 107

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/108 (51%), Positives = 69/108 (63%), Gaps = 3/108 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTE+CI CK TDCV+VCPVDCF+EG NFL I PDECIDC +C PECP +AI    D
Sbjct: 1   MAYVVTESCIKCKFTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCVPECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                  ++ +N+E A  WP I  +K+ LP A + +G   K  KY   
Sbjct: 61  VPDTQRAFIALNAELAKAWPTIVERKDPLPDADEWNGRADKL-KYLER 107


>gi|361779|prf||1410240A ferredoxin
          Length = 106

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/102 (59%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
           T+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   TFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               + ++++N++ A  WPNIT KK++L  A + DGVK K +
Sbjct: 61  PEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQ 102


>gi|145588570|ref|YP_001155167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046976|gb|ABP33603.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 107

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTYVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCVPECPVNAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++K+N+E +  W +IT  K +LP A +   VK K ++   
Sbjct: 61  VPGDQQSFIKLNAELSPDWTSITKSKPALPDADEWKDVKNKLDQLVK 107


>gi|114570845|ref|YP_757525.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Maricaulis maris MCS10]
 gi|114341307|gb|ABI66587.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Maricaulis
           maris MCS10]
          Length = 113

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYIVTDACVRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
              +  WL INS++A  WPNIT +K++   A  M     KYEKYFS  PG  +
Sbjct: 61  DDKDGKWLAINSKFAETWPNITLRKDAPADADAMADETGKYEKYFSEKPGSGD 113


>gi|11514021|pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
          Length = 106

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVE CPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEECPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|325277034|ref|ZP_08142695.1| ferredoxin [Pseudomonas sp. TJI-51]
 gi|324097831|gb|EGB96016.1| ferredoxin [Pseudomonas sp. TJI-51]
          Length = 107

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  VPAGMENFIELNAELAEIWPNITERKDALPDAEEWDGKIGKIADL 105


>gi|159186232|ref|NP_356078.2| ferredoxin [Agrobacterium tumefaciens str. C58]
 gi|159141366|gb|AAK88863.2| ferredoxin [Agrobacterium tumefaciens str. C58]
          Length = 111

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/111 (57%), Positives = 77/111 (69%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPV+CFYEGEN L IHPD+CIDCG+CE ECP  AI+PDTE
Sbjct: 1   MPYVVTENCIACKYMDCVEVCPVECFYEGENMLVIHPDQCIDCGICERECPAAAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            GL +WL +N  Y+  WP +  K+    +A  M+G   K+    S NPG  
Sbjct: 61  AGLHVWLDLNRHYSGIWPRVHQKRTPPDNADTMNGAAAKFS-ILSKNPGAG 110


>gi|30248037|ref|NP_840107.1| 7Fe ferredoxin [Nitrosomonas europaea ATCC 19718]
 gi|30179922|emb|CAD83917.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 107

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E +  W  I  KK++LP A +   V  K +K 
Sbjct: 61  VPEDQRQFIALNAELSKIWDPIIEKKDALPDADEWASVTDKLDKL 105


>gi|152997736|ref|YP_001342571.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Marinomonas sp. MWYL1]
 gi|150838660|gb|ABR72636.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Marinomonas
           sp. MWYL1]
          Length = 107

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MAFIVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                E+++++N + +  WPNI  KK++LP AA+ DGV+ K E  
Sbjct: 61  LPEDQEVFVELNRDLSLIWPNIAEKKDALPDAAQWDGVEDKLEHL 105


>gi|82701854|ref|YP_411420.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosospira multiformis
           ATCC 25196]
 gi|82409919|gb|ABB74028.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 107

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI  +  
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N+E +  W  I  KK++LP A     V +K EK 
Sbjct: 61  VPGTQQHFIALNAELSKSWKPIIEKKDALPDADDWAKVTEKLEKL 105


>gi|46371302|gb|AAS90417.1| ferredoxin A [Azotobacter chroococcum]
          Length = 107

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N++ A  WPNIT KKE+L  A   DGVK K +  
Sbjct: 61  VPEDMQEFIQMNADLAEVWPNITEKKEALSDAEDWDGVKGKLQHL 105


>gi|221134033|ref|ZP_03560338.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola sp.
           HTCC2999]
          Length = 108

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/108 (52%), Positives = 69/108 (63%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +C PECP DAI  D +
Sbjct: 1   MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCELCVPECPADAIVQDEK 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
             P    +L++N+E A QWPNI   K +   A K +GV  K       
Sbjct: 61  ISPDQAQFLELNAELAKQWPNINEMKPAPADADKWNGVANKIPLLLIE 108


>gi|58582544|ref|YP_201560.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624429|ref|YP_451801.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58427138|gb|AAW76175.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368369|dbj|BAE69527.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 107

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E +  WP +T ++E LP AA+ DG   K    
Sbjct: 61  VPAGQEGFVALNAELSKVWPVLTVRQEPLPDAAEWDGKPNKLPLL 105


>gi|330967908|gb|EGH68168.1| ferredoxin [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 107

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/105 (63%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+S+P AA+ DG K K E  
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDSMPDAAEWDGKKGKIEDL 105


>gi|160871760|ref|ZP_02061892.1| ferredoxin [Rickettsiella grylli]
 gi|159120559|gb|EDP45897.1| ferredoxin [Rickettsiella grylli]
          Length = 111

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/102 (54%), Positives = 71/102 (69%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT++VTE CI CK+TDCVEVCPVDCFYEG N L IHPDECIDCG+CEPECPV+AI  +  
Sbjct: 5   MTFLVTEKCIRCKYTDCVEVCPVDCFYEGPNMLVIHPDECIDCGLCEPECPVNAIYVEDD 64

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                + +L +N E + +WPNI  +K+  P A +    + K 
Sbjct: 65  LPDKYKEFLALNKELSKKWPNIVRRKDPPPDADEWKDKEDKL 106


>gi|6729695|pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
          Length = 106

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTKCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT  K+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEDKDPLPDAEDWDGVKGKLQHL 104


>gi|237747779|ref|ZP_04578259.1| ferredoxin [Oxalobacter formigenes OXCC13]
 gi|229379141|gb|EEO29232.1| ferredoxin [Oxalobacter formigenes OXCC13]
          Length = 107

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 71/107 (66%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CILCK+TDCV+VCPVDCF+EG N L I+P+ECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTDACILCKYTDCVDVCPVDCFHEGPNTLVINPNECIDCAVCVPECPAEAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++ +N+E + +WP IT  K+ +P A K   VK K      
Sbjct: 61  VPENQQEFIALNAELSGKWPTITRSKDPMPDADKWKDVKDKLRHLIK 107


>gi|221201316|ref|ZP_03574355.1| putative ferredoxin [Burkholderia multivorans CGD2M]
 gi|221208796|ref|ZP_03581794.1| putative ferredoxin [Burkholderia multivorans CGD2]
 gi|221214124|ref|ZP_03587097.1| putative ferredoxin [Burkholderia multivorans CGD1]
 gi|221166301|gb|EED98774.1| putative ferredoxin [Burkholderia multivorans CGD1]
 gi|221171252|gb|EEE03701.1| putative ferredoxin [Burkholderia multivorans CGD2]
 gi|221178584|gb|EEE10992.1| putative ferredoxin [Burkholderia multivorans CGD2M]
          Length = 136

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 30  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 89

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 90  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDKLHLL 134


>gi|87122438|ref|ZP_01078318.1| ferredoxin I [Marinomonas sp. MED121]
 gi|86162231|gb|EAQ63516.1| ferredoxin I [Marinomonas sp. MED121]
          Length = 107

 Score =  113 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPASAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                E ++++N++ A  WPNIT KK++L  AA  DGV+ K E  
Sbjct: 61  LPEDQEHFVELNADLANVWPNITEKKDALADAATWDGVEDKLEHL 105


>gi|109896757|ref|YP_660012.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas atlantica
           T6c]
 gi|109699038|gb|ABG38958.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Pseudoalteromonas
           atlantica T6c]
          Length = 107

 Score =  113 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +CEPECP  AI  D  
Sbjct: 1   MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCALCEPECPAKAIFQDDK 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
             PG E + ++N+E +  WPNI         A + DGV  K E
Sbjct: 61  LPPGQEAFNELNAELSKIWPNIIEVIPPPADAKEWDGVPNKIE 103


>gi|86157959|ref|YP_464744.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|197122738|ref|YP_002134689.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|220917521|ref|YP_002492825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85774470|gb|ABC81307.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|196172587|gb|ACG73560.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|219955375|gb|ACL65759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 107

 Score =  113 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVV E CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDCG CEP CP  AI P+  
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCGACEPACPTKAIFPEES 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++++NSE +  WPNIT KK+ LP A +   V++K +K 
Sbjct: 61  LPAKWNEYVQLNSELSKAWPNITEKKDPLPEAEEWKDVEEKRDKL 105


>gi|166711847|ref|ZP_02243054.1| ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|289662698|ref|ZP_06484279.1| ferredoxin [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|325924485|ref|ZP_08186004.1| ferredoxin [Xanthomonas gardneri ATCC 19865]
 gi|325544980|gb|EGD16315.1| ferredoxin [Xanthomonas gardneri ATCC 19865]
          Length = 107

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E LP AA+ DG   K    
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEPLPDAAEWDGKPNKLPLL 105


>gi|237800177|ref|ZP_04588638.1| ferredoxin [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023034|gb|EGI03091.1| ferredoxin [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 107

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 65/105 (61%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+ +P AA+ DG   K E  
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDGMPDAAEWDGKPGKIEHL 105


>gi|325982038|ref|YP_004294440.1| Ferredoxin, C-terminal protein [Nitrosomonas sp. AL212]
 gi|325531557|gb|ADZ26278.1| Ferredoxin, C-terminal protein [Nitrosomonas sp. AL212]
          Length = 107

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI    D
Sbjct: 1   MAYVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E + +W  I  KK++LP A     VK K ++ 
Sbjct: 61  VPDEQTHFISLNAELSKEWRPIIEKKDALPDADDWASVKDKLDQL 105


>gi|302187930|ref|ZP_07264603.1| ferredoxin [Pseudomonas syringae pv. syringae 642]
 gi|330936780|gb|EGH40942.1| ferredoxin [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330975363|gb|EGH75429.1| ferredoxin [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 107

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K  + 
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKTGKIAEL 105


>gi|157831128|pdb|1FRX|A Chain A, Structure And Properties Of C20s Fdi Mutant
          Length = 106

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVSPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|262277940|ref|ZP_06055733.1| ferredoxin-1 (Ferredoxin I) (FdI) [alpha proteobacterium HIMB114]
 gi|262225043|gb|EEY75502.1| ferredoxin-1 (Ferredoxin I) (FdI) [alpha proteobacterium HIMB114]
          Length = 107

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/107 (62%), Positives = 78/107 (72%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V E CI CK TDCV+VCPVDCFYEGEN L I+PDECIDCGVCEPECP+DAI+PDT 
Sbjct: 1   MTYIVNEKCIKCKLTDCVDVCPVDCFYEGENMLVINPDECIDCGVCEPECPIDAIEPDTN 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             +E  L +N EY+ +WPNI+ KKE L    K    K K+ KYF   
Sbjct: 61  ANVEEMLLVNKEYSLKWPNISKKKEPLNDWEKYKDEKDKFNKYFEKK 107


>gi|21231193|ref|NP_637110.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66768799|ref|YP_243561.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991913|ref|YP_001903923.1| hypothetical protein xccb100_2518 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112835|gb|AAM41034.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66574131|gb|AAY49541.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733673|emb|CAP51878.1| fdx [Xanthomonas campestris pv. campestris]
          Length = 107

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHAGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E LP AA+ DG   K    
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTVRQEPLPDAAEWDGKPDKLPLL 105


>gi|330959230|gb|EGH59490.1| ferredoxin [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 107

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K  + 
Sbjct: 61  IPAGMENFIELNAELADVWPNITEKKDAMPDAAEWDGKPGKIAEL 105


>gi|332969296|gb|EGK08322.1| ferredoxin [Psychrobacter sp. 1501(2011)]
          Length = 107

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E A +WPNIT   + LP A K DGV+ K +
Sbjct: 61  VPKGQEEFIALNAELAEEWPNITEMHDQLPDAEKWDGVEGKIQ 103


>gi|114330158|ref|YP_746380.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nitrosomonas eutropha C91]
 gi|114307172|gb|ABI58415.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nitrosomonas
           eutropha C91]
          Length = 107

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI  + +
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E +  W  I  KK++LP A +   V  K +  
Sbjct: 61  VAEDQRRFIALNAELSKIWEPIIEKKDALPDADEWASVTDKLDHL 105


>gi|1589261|prf||2210388A ferredoxin:ISOTYPE=II
          Length = 104

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 63/110 (57%), Positives = 70/110 (63%), Gaps = 8/110 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVC PECP +AI      
Sbjct: 1   PYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCNPECPAEAI------ 54

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
               WL+IN ++A  WPNIT K  +L  A        K     S NPG  
Sbjct: 55  -AGKWLEINRKFADLWPNITRKGPALADADDWKDKPDK-TGLLSENPGKG 102


>gi|229588702|ref|YP_002870821.1| ferredoxin I [Pseudomonas fluorescens SBW25]
 gi|37930233|gb|AAP76284.1| unknown [Pseudomonas sp. PCL1171]
 gi|229360568|emb|CAY47425.1| ferredoxin I [Pseudomonas fluorescens SBW25]
          Length = 107

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N E A  WPNIT +K+ +P AA+ DG K K    
Sbjct: 61  VPAEMQEFIQLNVELAEIWPNITERKDPMPDAAEWDGKKGKIADL 105


>gi|88813310|ref|ZP_01128549.1| ferrodoxin [Nitrococcus mobilis Nb-231]
 gi|88789482|gb|EAR20610.1| ferrodoxin [Nitrococcus mobilis Nb-231]
          Length = 108

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/108 (52%), Positives = 70/108 (64%), Gaps = 3/108 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE CI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +C PECPV+AI  D  
Sbjct: 1   MTYVVTERCIRCKYTDCVEVCPVDCFHEGRNFLVIDPDECIDCALCVPECPVEAIYADDR 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
              G E + ++N++ A  WP IT +K +   A +      K  +Y   
Sbjct: 61  LPEGQERFFELNAQLARAWPVITRRKPAPADAEEWREATDKL-RYLEE 107


>gi|157831043|pdb|1FD2|A Chain A, Site-Directed Mutagenesis Of Azotobacter Vinelandii
           Ferredoxin I. (Fe-S) Cluster-Driven Protein
           Rearrangement
          Length = 106

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVAPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|319786641|ref|YP_004146116.1| hypothetical protein Psesu_1035 [Pseudoxanthomonas suwonensis 11-1]
 gi|317465153|gb|ADV26885.1| hypothetical protein Psesu_1035 [Pseudoxanthomonas suwonensis 11-1]
          Length = 107

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E +  WP IT +KE LP AA+ DG   K +
Sbjct: 61  VPAGQEGFVALNAELSRAWPVITVRKEPLPDAAEWDGKGDKLK 103


>gi|170727750|ref|YP_001761776.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169813097|gb|ACA87681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 107

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/106 (50%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVT+NCI CK+TDCV VCPVD F+EG NFLAI+PD CIDC +C PEC   AI  +  
Sbjct: 1   MAFVVTDNCIRCKYTDCVAVCPVDAFHEGPNFLAINPDVCIDCELCVPECAAAAIFQEDA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
              G+E +L++N+E A  WP IT   ++   A + DGV+ K E   
Sbjct: 61  LPEGMEQYLELNAELAQIWPVITEVIDAPLDAEQWDGVEDKREHLI 106


>gi|28871202|ref|NP_793821.1| ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969150|ref|ZP_03397289.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|301383955|ref|ZP_07232373.1| ferredoxin [Pseudomonas syringae pv. tomato Max13]
 gi|302064159|ref|ZP_07255700.1| ferredoxin [Pseudomonas syringae pv. tomato K40]
 gi|302134755|ref|ZP_07260745.1| ferredoxin [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28854452|gb|AAO57516.1| ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926148|gb|EEB59704.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|330872695|gb|EGH06844.1| ferredoxin [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331016400|gb|EGH96456.1| ferredoxin [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 107

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+ +P AA  DG K K E  
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDGMPDAADWDGKKGKIEHL 105


>gi|71736534|ref|YP_275946.1| ferredoxin [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487048|ref|ZP_05641089.1| ferredoxin [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|71557087|gb|AAZ36298.1| ferredoxin [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323088|gb|EFW79177.1| ferredoxin [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329640|gb|EFW85629.1| ferredoxin [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330878041|gb|EGH12190.1| ferredoxin [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330894626|gb|EGH27287.1| ferredoxin [Pseudomonas syringae pv. mori str. 301020]
 gi|330985142|gb|EGH83245.1| ferredoxin [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009313|gb|EGH89369.1| ferredoxin [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 107

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K    
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKPGKIADL 105


>gi|307824341|ref|ZP_07654567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacter
           tundripaludum SV96]
 gi|307734721|gb|EFO05572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacter
           tundripaludum SV96]
          Length = 107

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK TDCV+VCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKFTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIFAEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E+++ +N+E A QWP IT  K +LP A + +G + K +  
Sbjct: 61  LPEGQEVFIALNAELAKQWPVITDVKPALPEADEWNGKEGKLDLL 105


>gi|88857416|ref|ZP_01132059.1| putative ferredoxin [Pseudoalteromonas tunicata D2]
 gi|88820613|gb|EAR30425.1| putative ferredoxin [Pseudoalteromonas tunicata D2]
          Length = 121

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VV +NCI CK+TDCV VCPVD F+EG NFLAI P  CIDCG+CEPECP +AI  +  
Sbjct: 15  MAFVVGDNCIKCKYTDCVAVCPVDAFFEGPNFLAISPIICIDCGLCEPECPAEAIFQEDA 74

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  +L++N+E A  WPNIT  K     A   +GVK K +
Sbjct: 75  LPAEQHQYLELNAELAEIWPNITQVKTPPADADSWNGVKDKLK 117


>gi|88810236|ref|ZP_01125493.1| ferredoxin, 4Fe-4S [Nitrococcus mobilis Nb-231]
 gi|88791866|gb|EAR22976.1| ferredoxin, 4Fe-4S [Nitrococcus mobilis Nb-231]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFLAI P+ECIDC +CEPECP +AI  +  
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLAIDPEECIDCTLCEPECPAEAIFSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  +L++N+E A +WP IT  K++   A + DG   K +
Sbjct: 61  LPEEQHHFLELNAELAQKWPVITEMKDAPKDAEEWDGKPGKLQ 103


>gi|325917219|ref|ZP_08179445.1| ferredoxin [Xanthomonas vesicatoria ATCC 35937]
 gi|325536560|gb|EGD08330.1| ferredoxin [Xanthomonas vesicatoria ATCC 35937]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E LP AA  DG   K    
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEPLPDAADWDGKPNKLPLL 105


>gi|260549538|ref|ZP_05823756.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|293608589|ref|ZP_06690892.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|260407331|gb|EEX00806.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|292829162|gb|EFF87524.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQKWPNITQIGDQPADREEWNGKPDKLQ 103


>gi|257454098|ref|ZP_05619372.1| ferredoxin-1 [Enhydrobacter aerosaccus SK60]
 gi|257448576|gb|EEV23545.1| ferredoxin-1 [Enhydrobacter aerosaccus SK60]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NC+ CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCVRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E A +WPNI+   + LP A + DGV  K +
Sbjct: 61  VPKGQEIYIELNAELAEKWPNISAMHDPLPDAKEWDGVPNKLQ 103


>gi|56478120|ref|YP_159709.1| ferredoxin [Aromatoleum aromaticum EbN1]
 gi|56314163|emb|CAI08808.1| Ferredoxin [Aromatoleum aromaticum EbN1]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE CI CK+TDCV+VCPVDCF EG NFLAI P ECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTEACIRCKYTDCVDVCPVDCFREGANFLAIDPTECIDCTLCVAECPVEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G   ++ +N+E A QW  I  +K+ LP A +      K ++ 
Sbjct: 61  VPEGQRHFIALNAELAQQWKPIVERKDPLPDADEWAKRTGKLDEL 105


>gi|90416735|ref|ZP_01224665.1| ferredoxin I [marine gamma proteobacterium HTCC2207]
 gi|90331488|gb|EAS46724.1| ferredoxin I [marine gamma proteobacterium HTCC2207]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT++V +NCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI  + E
Sbjct: 1   MTFIVGDNCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVGAIFAEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++L+IN+E A  WPNIT  K++   AA+ DGV+ K +
Sbjct: 61  IPEGQEVFLEINAELADVWPNITEMKDAPADAAEWDGVENKLQ 103


>gi|289626002|ref|ZP_06458956.1| ferredoxin [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651482|ref|ZP_06482825.1| ferredoxin [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488244|ref|ZP_07006279.1| Ferredoxin [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157252|gb|EFH98337.1| Ferredoxin [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330868574|gb|EGH03283.1| ferredoxin [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330950645|gb|EGH50905.1| ferredoxin [Pseudomonas syringae Cit 7]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K    
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKTGKIADL 105


>gi|254499063|ref|ZP_05111755.1| ferredoxin II (4Fe-4S) [Legionella drancourtii LLAP12]
 gi|254351690|gb|EET10533.1| ferredoxin II (4Fe-4S) [Legionella drancourtii LLAP12]
          Length = 109

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/108 (55%), Positives = 77/108 (71%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + + ++N+E A +W NIT KK++ P A   + VK K +     
Sbjct: 61  LTDEQQQFKELNAELAQKWSNITAKKDAPPDAKDWEDVKDKLQYLQKE 108


>gi|270157017|ref|ZP_06185674.1| ferredoxin-1 [Legionella longbeachae D-4968]
 gi|289164568|ref|YP_003454706.1| ferredoxin [Legionella longbeachae NSW150]
 gi|269989042|gb|EEZ95296.1| ferredoxin-1 [Legionella longbeachae D-4968]
 gi|288857741|emb|CBJ11585.1| putative ferredoxin [Legionella longbeachae NSW150]
          Length = 109

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHP+ECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIKCKYTDCVEVCPVDCFYEGPNFLVIHPEECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P  + + ++N++ +  WPNIT+KK++   A   + VK K +  
Sbjct: 61  LTPEQQQFKELNAKLSKNWPNITSKKDAPADAKDWEEVKDKLQHL 105


>gi|262369723|ref|ZP_06063051.1| 7-Fe ferredoxin [Acinetobacter johnsonii SH046]
 gi|262315791|gb|EEY96830.1| 7-Fe ferredoxin [Acinetobacter johnsonii SH046]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E +  WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQTWPNITQIGDQPADREEWNGKADKLQ 103


>gi|66044623|ref|YP_234464.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255330|gb|AAY36426.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas syringae pv.
           syringae B728a]
 gi|330896093|gb|EGH28314.1| ferredoxin [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330968926|gb|EGH68992.1| ferredoxin [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K    
Sbjct: 61  IPAGMENFIELNAELAEIWPNITEKKDAMPDAAEWDGKTGKIADL 105


>gi|289669666|ref|ZP_06490741.1| ferredoxin [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E+LP AA+ DG   K    
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEALPDAAEWDGKPNKLPLL 105


>gi|126667869|ref|ZP_01738835.1| RecA DNA recombination protein [Marinobacter sp. ELB17]
 gi|126627685|gb|EAZ98316.1| RecA DNA recombination protein [Marinobacter sp. ELB17]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT++VT+NCI CKHTDCVEVCPVDCFYEG NFL I PDECIDC +CEPECPV+AI  + E
Sbjct: 1   MTFIVTDNCIKCKHTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPVEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                ++++++N++ A +WPNIT KKE++  A K DGV  K +
Sbjct: 61  LPDNQKVFIELNADLAGKWPNITEKKEAMVDAEKWDGVPDKLQ 103


>gi|220934455|ref|YP_002513354.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995765|gb|ACL72367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/103 (58%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VV ENCI CK+TDCVEVCPVDCF+EG NFL I P+ECIDC +CEPECP +AI P+  
Sbjct: 1   MTFVVIENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPEECIDCTLCEPECPAEAIVPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +L++N+E + QWP ITT+KE    A + DG   K +
Sbjct: 61  IPEGQEDFLELNAELSRQWPVITTRKEPPADAEEWDGKPDKLK 103


>gi|254282951|ref|ZP_04957919.1| RecA DNA recombination protein [gamma proteobacterium NOR51-B]
 gi|219679154|gb|EED35503.1| RecA DNA recombination protein [gamma proteobacterium NOR51-B]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEDCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   ++++N+E A  WPNIT KK+  P A    G   K +
Sbjct: 61  LPADQTEFMELNAELADIWPNITEKKDPPPDAEDWAGKPDKLQ 103


>gi|285017975|ref|YP_003375686.1| ferredoxin protein [Xanthomonas albilineans GPE PC73]
 gi|283473193|emb|CBA15699.1| putative ferredoxin protein [Xanthomonas albilineans]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHAGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP +TT++E L  AA+ DG   K 
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTTRQEPLADAAEWDGKPNKL 102


>gi|169632883|ref|YP_001706619.1| 7-Fe ferredoxin [Acinetobacter baumannii SDF]
 gi|169796509|ref|YP_001714302.1| 7-Fe ferredoxin [Acinetobacter baumannii AYE]
 gi|184157558|ref|YP_001845897.1| ferredoxin [Acinetobacter baumannii ACICU]
 gi|239503728|ref|ZP_04663038.1| ferredoxin [Acinetobacter baumannii AB900]
 gi|260555572|ref|ZP_05827793.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|301347837|ref|ZP_07228578.1| ferredoxin [Acinetobacter baumannii AB056]
 gi|301511664|ref|ZP_07236901.1| ferredoxin [Acinetobacter baumannii AB058]
 gi|301597645|ref|ZP_07242653.1| ferredoxin [Acinetobacter baumannii AB059]
 gi|332853960|ref|ZP_08435080.1| ferredoxin-1 [Acinetobacter baumannii 6013150]
 gi|332870215|ref|ZP_08439110.1| ferredoxin-1 [Acinetobacter baumannii 6013113]
 gi|332874292|ref|ZP_08442211.1| ferredoxin-1 [Acinetobacter baumannii 6014059]
 gi|169149436|emb|CAM87322.1| 7-Fe ferredoxin [Acinetobacter baumannii AYE]
 gi|169151675|emb|CAP00465.1| 7-Fe ferredoxin [Acinetobacter baumannii]
 gi|183209152|gb|ACC56550.1| Ferredoxin [Acinetobacter baumannii ACICU]
 gi|193076943|gb|ABO11677.2| 7-Fe ferredoxin [Acinetobacter baumannii ATCC 17978]
 gi|260412114|gb|EEX05411.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|332728316|gb|EGJ59697.1| ferredoxin-1 [Acinetobacter baumannii 6013150]
 gi|332732382|gb|EGJ63639.1| ferredoxin-1 [Acinetobacter baumannii 6013113]
 gi|332737517|gb|EGJ68425.1| ferredoxin-1 [Acinetobacter baumannii 6014059]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +WPNIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQKWPNITQIGEQPADREEWNGKPDKLQ 103


>gi|46371298|gb|AAS90414.1| ferredoxin A [Azomonas macrocytogenes]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVRPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N++ A  WPNIT KKE+L  A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNADLAEVWPNITEKKEALSDAEDWDGVKGKLQHL 105


>gi|291613179|ref|YP_003523336.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291583291|gb|ADE10949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTENCI CK+TDCV+VCPVDCF+EG NFL I P ECIDC +C  ECP +AI    D
Sbjct: 1   MAYVVTENCIKCKYTDCVDVCPVDCFHEGPNFLVIDPGECIDCTLCVAECPANAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  ++ +N+E A QW  I  KK +   A +   VK K 
Sbjct: 61  VPVDQRQFIALNAELAKQWKVIVEKKAAPADADEWRDVKDKL 102


>gi|330993479|ref|ZP_08317414.1| Ferredoxin-2 [Gluconacetobacter sp. SXCC-1]
 gi|329759509|gb|EGG76018.1| Ferredoxin-2 [Gluconacetobacter sp. SXCC-1]
          Length = 107

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/107 (57%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VTENCI CK TDCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++    
Sbjct: 2   VTENCIRCKFTDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSDDRAT 61

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            W ++N++YA  WPNIT K ++   A +      K E   SP P   
Sbjct: 62  PWAELNAKYAAVWPNITRKLDAPADAEEWKDKPNKKE-LLSPEPQKG 107


>gi|302879644|ref|YP_003848208.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Gallionella capsiferriformans ES-2]
 gi|302582433|gb|ADL56444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 107

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVV+ENCI CK TDCV+VCPVDCF EG NFL I PDECIDC +C  ECP +AI  +  
Sbjct: 1   MTYVVSENCIKCKFTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPAEAIFAEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  +  +N+E +  W  I  KK+    A +  GVK K    
Sbjct: 61  LPADQTHFTALNAELSKLWGVIVEKKDPPADAEEWQGVKDKLHLL 105


>gi|254252880|ref|ZP_04946198.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa AUO158]
 gi|124895489|gb|EAY69369.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa AUO158]
          Length = 134

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 28  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 87

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 88  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDKLHLL 132


>gi|304310610|ref|YP_003810208.1| FDX ferredoxin [gamma proteobacterium HdN1]
 gi|301796343|emb|CBL44551.1| FDX ferredoxin [gamma proteobacterium HdN1]
          Length = 107

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/103 (61%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E A +WPNIT KK+ LP A + DG   K +
Sbjct: 61  VPDDQQQFIPLNAELAEKWPNITEKKDPLPEAKEWDGKPDKMK 103


>gi|237745589|ref|ZP_04576069.1| ferredoxin-1 [Oxalobacter formigenes HOxBLS]
 gi|229376940|gb|EEO27031.1| ferredoxin-1 [Oxalobacter formigenes HOxBLS]
          Length = 107

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 71/107 (66%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ C+LCK+TDCV+VCPVDCF+EG N L I+P+ECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTDACVLCKYTDCVDVCPVDCFHEGPNTLVINPNECIDCAVCVPECPSEAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++ +N+E + +WP IT  K+ LP A K   VK K      
Sbjct: 61  VPADQQEYIALNAELSRKWPTITRSKDPLPDADKWKDVKNKIIHLIK 107


>gi|1169669|sp|P80448|FER2_RHORU RecName: Full=Ferredoxin-2; AltName: Full=Ferredoxin II; Short=FdII
          Length = 106

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/110 (57%), Positives = 70/110 (63%), Gaps = 8/110 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVC PECP +AI      
Sbjct: 1   PYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCNPECPAEAI------ 54

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
               WL+IN ++A  WPNIT K  +L  A        K     S NPG  
Sbjct: 55  -AGKWLEINRKFADLWPNITRKGPALADADDWKDKPDK-TGLLSENPGKG 102


>gi|119897322|ref|YP_932535.1| ferredoxin [Azoarcus sp. BH72]
 gi|119669735|emb|CAL93648.1| probable ferredoxin [Azoarcus sp. BH72]
          Length = 107

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTE+CI CK+TDCV+VCPVDCF EGENFL I P+ECIDC +C  ECPV+AI    D
Sbjct: 1   MAYVVTESCIRCKYTDCVDVCPVDCFREGENFLVIDPEECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N+E A  W  I  +KE LP A +   VK K  + 
Sbjct: 61  VPADQQQFIALNAELARTWKPIVERKEPLPDAEQWAKVKGKTGEL 105


>gi|296107515|ref|YP_003619216.1| ferredoxin II (4Fe-4S) [Legionella pneumophila 2300/99 Alcoy]
 gi|295649417|gb|ADG25264.1| ferredoxin II (4Fe-4S) [Legionella pneumophila 2300/99 Alcoy]
          Length = 111

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + + ++N+E +  WPNIT KK++   A   + VK K +     
Sbjct: 61  LTDEQQQFKELNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQYLQKE 108


>gi|323494050|ref|ZP_08099166.1| ferredoxin [Vibrio brasiliensis LMG 20546]
 gi|323311677|gb|EGA64825.1| ferredoxin [Vibrio brasiliensis LMG 20546]
          Length = 107

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 +++++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  VPDDQTIYIQLNAELAELWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|294341325|emb|CAZ89740.1| ferredoxin [Thiomonas sp. 3As]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI    D
Sbjct: 1   MTFVVTENCIKCKFTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E + +WP+IT +K + P   + +G   K +
Sbjct: 61  VPGDQQAFIALNAELSRRWPSITKRKPAPPDGEEWNGKPGKLQ 103


>gi|194365291|ref|YP_002027901.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Stenotrophomonas maltophilia R551-3]
 gi|194348095|gb|ACF51218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Stenotrophomonas maltophilia R551-3]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CKHTDCVEVCPVDCF+EG NFL I PDECIDC +CEPECPV+AI P+  
Sbjct: 1   MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A +WP +T +K+    A + DG   K +  
Sbjct: 61  VPAGQESFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLL 105


>gi|83647900|ref|YP_436335.1| ferredoxin [Hahella chejuensis KCTC 2396]
 gi|83635943|gb|ABC31910.1| Ferredoxin [Hahella chejuensis KCTC 2396]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N E    WPNIT KK++   A    GVK K +  
Sbjct: 61  LPEDQKEFIALNEELCRVWPNITEKKDAPADADDWKGVKGKLKDL 105


>gi|50084667|ref|YP_046177.1| 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|262278522|ref|ZP_06056307.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus RUH2202]
 gi|299770827|ref|YP_003732853.1| ferredoxin [Acinetobacter sp. DR1]
 gi|15217085|gb|AAK92496.1|AF400582_5 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|49530643|emb|CAG68355.1| 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|262258873|gb|EEY77606.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus RUH2202]
 gi|298700915|gb|ADI91480.1| ferredoxin [Acinetobacter sp. DR1]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGDQPADREEWNGKPDKLQ 103


>gi|52842141|ref|YP_095940.1| ferredoxin II (4Fe-4S) [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|54294810|ref|YP_127225.1| hypothetical protein lpl1887 [Legionella pneumophila str. Lens]
 gi|52629252|gb|AAU27993.1| ferredoxin II (4Fe-4S) [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53754642|emb|CAH16126.1| hypothetical protein lpl1887 [Legionella pneumophila str. Lens]
          Length = 111

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + + ++N+E +  WPNIT KK++   A   + VK K +     
Sbjct: 61  LTEEQQQFKELNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQYLQKE 108


>gi|21242508|ref|NP_642090.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|78047349|ref|YP_363524.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|294626612|ref|ZP_06705209.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294666343|ref|ZP_06731591.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325927274|ref|ZP_08188530.1| ferredoxin [Xanthomonas perforans 91-118]
 gi|21107958|gb|AAM36626.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|78035779|emb|CAJ23470.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|292599032|gb|EFF43172.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292603892|gb|EFF47295.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325542350|gb|EGD13836.1| ferredoxin [Xanthomonas perforans 91-118]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E  P AA+ DG   K    
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTVRQEPAPDAAEWDGKPNKLPLL 105


>gi|237653740|ref|YP_002890054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237624987|gb|ACR01677.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE CI CK+TDCV+VCPVDCF EG NFL I P+ECIDC +C  ECPV+AI  +  
Sbjct: 1   MTYVVTERCIRCKYTDCVDVCPVDCFREGPNFLVIDPEECIDCTLCVAECPVEAIYSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N+E A QW  I  +K+ LP A     +K K  + 
Sbjct: 61  VPDDQKGYIALNAELAKQWKPIVERKDPLPDADHWARIKGKLGEL 105


>gi|327481594|gb|AEA84904.1| ferredoxin, 4Fe-4S [Pseudomonas stutzeri DSM 4166]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CK+TDCVEVCP DCF+EG NFL I+P+ CIDC +C PECP DAI  D  
Sbjct: 1   MTYVVTENCIRCKYTDCVEVCPADCFHEGPNFLVINPETCIDCSLCAPECPADAIFADNA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G + +L++N+E A  WP IT     L  A        K 
Sbjct: 61  LPEGQQHFLELNAELAEVWPVITQSASPLAEAETWVDQSGKL 102


>gi|77362322|ref|YP_341896.1| putative ferredoxin [Pseudoalteromonas haloplanktis TAC125]
 gi|76877233|emb|CAI89450.1| putative ferredoxin [Pseudoalteromonas haloplanktis TAC125]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECSADAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E A  WP IT  K +   A + +G+  K +
Sbjct: 61  LPESQQEFTELNAELALIWPRITQAKPAPADADEWNGIADKLK 103


>gi|190573755|ref|YP_001971600.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|254523787|ref|ZP_05135842.1| ferredoxin [Stenotrophomonas sp. SKA14]
 gi|190011677|emb|CAQ45296.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|219721378|gb|EED39903.1| ferredoxin [Stenotrophomonas sp. SKA14]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CKHTDCVEVCPVDCF+EG NFL I PDECIDC +CEPECPV+AI P+  
Sbjct: 1   MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A +WP +T +K+    A + DG   K +  
Sbjct: 61  VPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLL 105


>gi|254505412|ref|ZP_05117559.1| ferredoxin [Vibrio parahaemolyticus 16]
 gi|219551529|gb|EED28507.1| ferredoxin [Vibrio parahaemolyticus 16]
          Length = 107

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K ++  A K +GV  K 
Sbjct: 61  VPEDQKIYVELNAELAELWPVQTEVKPAMDEAEKWNGVPDKL 102


>gi|255319931|ref|ZP_05361131.1| ferredoxin-1 [Acinetobacter radioresistens SK82]
 gi|262379624|ref|ZP_06072780.1| ferredoxin [Acinetobacter radioresistens SH164]
 gi|255302951|gb|EET82168.1| ferredoxin-1 [Acinetobacter radioresistens SK82]
 gi|262299081|gb|EEY86994.1| ferredoxin [Acinetobacter radioresistens SH164]
          Length = 107

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGEQPADREEWNGKPDKLQ 103


>gi|34498889|ref|NP_903104.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34104740|gb|AAQ61097.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
          Length = 107

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVT+ CI CK+TDCVEVCPVDCF EG NFLAI PDECIDC +C PECPV AI    D
Sbjct: 1   MAYVVTDACIKCKYTDCVEVCPVDCFREGPNFLAIDPDECIDCSLCVPECPVGAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E A  WP+I  + + LP  A    VK K  
Sbjct: 61  VPKGQEAFIALNAELAKNWPSIVERIDPLPDHADWADVKDKLP 103


>gi|124266690|ref|YP_001020694.1| ferredoxin [Methylibium petroleiphilum PM1]
 gi|124259465|gb|ABM94459.1| ferredoxin [Methylibium petroleiphilum PM1]
          Length = 107

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI  + D
Sbjct: 1   MTHVVTEACIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAILPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++ IN E + +WP+IT +K +LP A        K  +   
Sbjct: 61  VPGDQQQFIAINVELSKKWPSITKRKTALPDADDWKDRTDKLGELIR 107


>gi|315123428|ref|YP_004065434.1| putative ferredoxin [Pseudoalteromonas sp. SM9913]
 gi|315017188|gb|ADT70525.1| putative ferredoxin [Pseudoalteromonas sp. SM9913]
          Length = 107

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECAADAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP IT  K +   A   +GV  K +  
Sbjct: 61  LPESQKEFTQLNAELAEIWPRITQVKPAPEDADSWNGVANKLKLL 105


>gi|289208208|ref|YP_003460274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288943839|gb|ADC71538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 107

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M ++V ENCI CK+TDCVEVCPVDCF+EG NFLAI PDECIDC +CEPECP +AI P+  
Sbjct: 1   MAFIVLENCIKCKYTDCVEVCPVDCFHEGPNFLAIDPDECIDCTLCEPECPAEAIVPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++++N+E +  WP IT +K+    A + DGV+ K +  
Sbjct: 61  VPEDQLQFIELNAELSRTWPVITARKDPPEDAEEWDGVEGKLKHL 105


>gi|88798288|ref|ZP_01113874.1| ferrodoxin, 4Fe-4S [Reinekea sp. MED297]
 gi|88779064|gb|EAR10253.1| ferrodoxin, 4Fe-4S [Reinekea sp. MED297]
          Length = 107

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV ENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MAFVVIENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAILSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++++N+E A  WPNIT +K+ LP A + +GV  K  + 
Sbjct: 61  VPADQIDFIELNAELAEVWPNITEQKDPLPDADEQNGVPNKRTEL 105


>gi|332527731|ref|ZP_08403772.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332112129|gb|EGJ12105.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 107

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VV ++CI CK+TDCV+VCPVDCF EG NFL I P+ECIDC VC PECP +AI  + D
Sbjct: 1   MTHVVLDSCIRCKYTDCVDVCPVDCFREGPNFLVIDPEECIDCAVCIPECPANAILPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++++N+E A  WP+IT +K SLP A +    K K +
Sbjct: 61  VPADQLQFIQLNAELAKTWPSITKRKASLPDADEWKDRKNKLQ 103


>gi|118594760|ref|ZP_01552107.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Methylophilales bacterium HTCC2181]
 gi|118440538|gb|EAV47165.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Methylophilales bacterium HTCC2181]
          Length = 108

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/108 (53%), Positives = 72/108 (66%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFLAI P+ECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTESCIQCKYTDCVDVCPVDCFVEGPNFLAIDPEECIDCTLCVAECPVEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + +++IN++ A  WP IT KK++LP A    G   K E     
Sbjct: 61  VPEDQQEFIEINAKLAKVWPIITAKKDALPDADAFAGQANKKELLIEE 108


>gi|54297846|ref|YP_124215.1| hypothetical protein lpp1898 [Legionella pneumophila str. Paris]
 gi|53751631|emb|CAH13050.1| hypothetical protein lpp1898 [Legionella pneumophila str. Paris]
          Length = 111

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/108 (55%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + + K+N+E +  WPNIT KK++   A   + VK K +     
Sbjct: 61  LTEEQQQFKKLNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQYLQKE 108


>gi|262376219|ref|ZP_06069449.1| 7-Fe ferredoxin [Acinetobacter lwoffii SH145]
 gi|262308820|gb|EEY89953.1| 7-Fe ferredoxin [Acinetobacter lwoffii SH145]
          Length = 107

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGDQPADREEWNGKADKLQ 103


>gi|296135523|ref|YP_003642765.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295795645|gb|ADG30435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 107

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI    D
Sbjct: 1   MTFVVTENCIRCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++K+N+E + QWP+IT +K +   A +      K +
Sbjct: 61  VPGDQQAFIKLNAELSRQWPSITKRKAAPDDADEWKDKPDKLQ 103


>gi|91784742|ref|YP_559948.1| putative ferredoxin [Burkholderia xenovorans LB400]
 gi|296158268|ref|ZP_06841100.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
 gi|91688696|gb|ABE31896.1| Putative ferredoxin [Burkholderia xenovorans LB400]
 gi|295891604|gb|EFG71390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
          Length = 107

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++++N++ A  WP+IT  K  LP A +   VK K E    
Sbjct: 61  VPGDQQNFIELNADLAKSWPSITKTKAPLPEADEFKDVKDKLELLVR 107


>gi|119504839|ref|ZP_01626917.1| RecA DNA recombination protein [marine gamma proteobacterium
           HTCC2080]
 gi|119459444|gb|EAW40541.1| RecA DNA recombination protein [marine gamma proteobacterium
           HTCC2080]
          Length = 107

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP+DAI  + E
Sbjct: 1   MTFVVGEDCINCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPIDAIYSEDE 60

Query: 61  PG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                E +L +N+E A  WPNIT KK +L  A    G   K    
Sbjct: 61  LPAGQEQFLALNTELADIWPNITEKKPALEDAEAWTGKSDKLPLL 105


>gi|119468754|ref|ZP_01611806.1| putative ferredoxin [Alteromonadales bacterium TW-7]
 gi|119447810|gb|EAW29076.1| putative ferredoxin [Alteromonadales bacterium TW-7]
          Length = 107

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PECP +AI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECPAEAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP IT  K +   A   +GV+ K +  
Sbjct: 61  LPDSQKEFTELNAELALIWPRITQVKSAPDDADTWNGVENKLKLL 105


>gi|27367705|ref|NP_763232.1| ferredoxin [Vibrio vulnificus CMCP6]
 gi|37675831|ref|NP_936227.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|320157989|ref|YP_004190367.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Vibrio vulnificus
           MO6-24/O]
 gi|27359277|gb|AAO08222.1|AE016812_204 Ferredoxin [Vibrio vulnificus CMCP6]
 gi|37200370|dbj|BAC96197.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|319933301|gb|ADV88164.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Vibrio vulnificus
           MO6-24/O]
          Length = 107

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   + ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPEDQVIYKELNAELAELWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|171059471|ref|YP_001791820.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170776916|gb|ACB35055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 107

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI  + D
Sbjct: 1   MTHVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAILPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ IN+E + +WP+IT +K +LP A +    K K  + 
Sbjct: 61  VPADQMKFIAINAELSPKWPSITKRKAALPDADEWKDRKDKLGEL 105


>gi|294339652|emb|CAZ88012.1| Ferredoxin [Thiomonas sp. 3As]
          Length = 107

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI    D
Sbjct: 1   MTFVVTENCIRCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++K+N+E + QWP+IT +K +   A +      K +
Sbjct: 61  VPGDQQAFIKLNAELSRQWPSITKRKAAPDDADEWKDKPDKLQ 103


>gi|91776028|ref|YP_545784.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus flagellatus
           KT]
 gi|91710015|gb|ABE49943.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
           flagellatus KT]
          Length = 107

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/107 (51%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVVTENCI CK+TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI  +  
Sbjct: 1   MAYVVTENCIQCKYTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++++N+  A  WP+IT +K  LP A   +GV  K      
Sbjct: 61  VPEDQQEFIELNARLAQIWPSITARKAPLPDADANNGVPGKRSLLIE 107


>gi|198282163|ref|YP_002218484.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666462|ref|YP_002424528.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246684|gb|ACH82277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518675|gb|ACK79261.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 108

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDC EVCPV+CF+EG NFL I P ECIDC  C PECP DAI  D E
Sbjct: 1   MTYVVTENCIQCKYTDCAEVCPVECFHEGPNFLVIDPVECIDCAACVPECPADAIFADDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P    +  IN+E A  WP I  KK +LP A   +G   K    
Sbjct: 61  VPPDQRDFTAINAELARDWPVILRKKAALPDAETWNGKGDKRPLL 105


>gi|323496163|ref|ZP_08101221.1| ferredoxin [Vibrio sinaloensis DSM 21326]
 gi|323318440|gb|EGA71393.1| ferredoxin [Vibrio sinaloensis DSM 21326]
          Length = 107

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K ++  A K +GV  K 
Sbjct: 61  VPADQKIYIELNAELAEHWPVQTEVKPAMDEAEKWNGVADKL 102


>gi|93005103|ref|YP_579540.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
           cryohalolentis K5]
 gi|92392781|gb|ABE74056.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
           cryohalolentis K5]
          Length = 107

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCILCK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCILCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++ ++N E A +WPNIT  K  +P A K DGV+ K +
Sbjct: 61  VPKGQEIFTQLNEELAQKWPNITEMKGQMPEAEKWDGVEGKIQ 103


>gi|71278991|ref|YP_269613.1| ferredoxin, 4Fe-4S [Colwellia psychrerythraea 34H]
 gi|71144731|gb|AAZ25204.1| ferredoxin, 4Fe-4S [Colwellia psychrerythraea 34H]
          Length = 111

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCILCK+TDCV VCP D FYEG NFL I PD+CIDC +C  ECP  AI  + E
Sbjct: 1   MAFVVTDNCILCKYTDCVAVCPADAFYEGPNFLVISPDDCIDCDLCPVECPAGAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E A  WP IT  K  L  A K DGV  K +
Sbjct: 61  VPADQQEFIELNAELAKHWPRITEVKPPLEQAEKWDGVADKIQ 103


>gi|163803681|ref|ZP_02197543.1| ferredoxin [Vibrio sp. AND4]
 gi|159172520|gb|EDP57383.1| ferredoxin [Vibrio sp. AND4]
          Length = 107

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   + ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPDDQVLYKELNAELAEIWPVQTEIKPAMDEAEKWNGVPNKLD 103


>gi|84385231|ref|ZP_00988263.1| ferredoxin [Vibrio splendidus 12B01]
 gi|84379828|gb|EAP96679.1| ferredoxin [Vibrio splendidus 12B01]
          Length = 107

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV +NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVGDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K  +  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKAPMDEAEKWNGVSDKL 102


>gi|189184160|ref|YP_001937945.1| ferredoxin [Orientia tsutsugamushi str. Ikeda]
 gi|189180931|dbj|BAG40711.1| ferredoxin [Orientia tsutsugamushi str. Ikeda]
          Length = 106

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 74/103 (71%), Gaps = 1/103 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT++C+ CK+TDCVEVCPVDCF+EGE  + I P++CIDCGVCE ECPV AIKP+ E
Sbjct: 1   MTYVVTDSCVKCKYTDCVEVCPVDCFHEGEMMVVIDPEKCIDCGVCEAECPVGAIKPEAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             +  W+++  E++ +WP I  KK  LP A        K+EKY
Sbjct: 61  ELI-KWIELGQEFSKKWPQILHKKAPLPQADLYKDETNKFEKY 102


>gi|94311387|ref|YP_584597.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355239|gb|ABF09328.1| Ferredoxin [Cupriavidus metallidurans CH34]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E +  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIELNAELSRIWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|28897729|ref|NP_797334.1| ferredoxin [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838666|ref|ZP_01991333.1| ferredoxin-1 [Vibrio parahaemolyticus AQ3810]
 gi|260363840|ref|ZP_05776595.1| ferredoxin-1 [Vibrio parahaemolyticus K5030]
 gi|260876900|ref|ZP_05889255.1| ferredoxin-1 [Vibrio parahaemolyticus AN-5034]
 gi|260897958|ref|ZP_05906454.1| ferredoxin-1 [Vibrio parahaemolyticus Peru-466]
 gi|260902160|ref|ZP_05910555.1| ferredoxin-1 [Vibrio parahaemolyticus AQ4037]
 gi|28805942|dbj|BAC59218.1| ferredoxin [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747944|gb|EDM58810.1| ferredoxin-1 [Vibrio parahaemolyticus AQ3810]
 gi|308085488|gb|EFO35183.1| ferredoxin-1 [Vibrio parahaemolyticus Peru-466]
 gi|308093644|gb|EFO43339.1| ferredoxin-1 [Vibrio parahaemolyticus AN-5034]
 gi|308108295|gb|EFO45835.1| ferredoxin-1 [Vibrio parahaemolyticus AQ4037]
 gi|308113880|gb|EFO51420.1| ferredoxin-1 [Vibrio parahaemolyticus K5030]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPEDQTIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|91983674|gb|ABE68843.1| FdxA [Pseudomonas protegens]
 gi|91983704|gb|ABE68858.1| FdxA [Pseudomonas protegens]
 gi|91983706|gb|ABE68859.1| FdxA [Pseudomonas sp. K94.41]
 gi|91983708|gb|ABE68860.1| FdxA [Pseudomonas sp. S8-62]
 gi|91983722|gb|ABE68867.1| FdxA [Pseudomonas protegens]
 gi|91983724|gb|ABE68868.1| FdxA [Pseudomonas protegens]
          Length = 104

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPE 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ ++++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  EMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 102


>gi|187477594|ref|YP_785618.1| ferredoxin [Bordetella avium 197N]
 gi|115422180|emb|CAJ48704.1| ferredoxin [Bordetella avium 197N]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E + ++ +I+  K+ LP A + +GV+ K +  
Sbjct: 61  VPQDQMKFIALNAELSAEFASISRAKKPLPDADEWNGVQDKLQHL 105


>gi|292492665|ref|YP_003528104.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291581260|gb|ADE15717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 112

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  +  
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                  +LK+N+E A  WP IT  KE    A + D +K 
Sbjct: 61  LPEEHRNYLKLNAELARNWPVITESKEPPSDADQWDRIKN 100


>gi|187924909|ref|YP_001896551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phytofirmans PsJN]
 gi|187716103|gb|ACD17327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++++N+E A  WP+IT  K  LP A +   VK+K E  
Sbjct: 61  VPGDQQNFIELNAELAKNWPSITKTKAPLPEADEFKDVKEKLELL 105


>gi|153834717|ref|ZP_01987384.1| ferredoxin-1 [Vibrio harveyi HY01]
 gi|156973800|ref|YP_001444707.1| ferredoxin [Vibrio harveyi ATCC BAA-1116]
 gi|148868856|gb|EDL67920.1| ferredoxin-1 [Vibrio harveyi HY01]
 gi|156525394|gb|ABU70480.1| hypothetical protein VIBHAR_01510 [Vibrio harveyi ATCC BAA-1116]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   + ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPEDQVIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|328473289|gb|EGF44137.1| ferredoxin [Vibrio parahaemolyticus 10329]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPEDQIIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|153005139|ref|YP_001379464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028712|gb|ABS26480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 108

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVV E CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDCG CEP CP  AI P+  
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCGACEPACPTKAIFPEES 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N++    WPNI+ KK+ LP A +   V++K +
Sbjct: 61  LPAKWKEYTQLNADLCKTWPNISEKKDPLPDADQWKDVEEKRQ 103


>gi|326317032|ref|YP_004234704.1| ferredoxin, C-terminal protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373868|gb|ADX46137.1| Ferredoxin, C-terminal protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 107

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+ENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++K+N+E A QW +IT +K SLP A + +G   K  +   
Sbjct: 61  LPADQQAFIKLNAELAPQWKSITKRKASLPDADEWNGKPGKIAELVR 107


>gi|300021613|ref|YP_003754224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523434|gb|ADJ21903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 114

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 80/114 (70%), Gaps = 2/114 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI  D E
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFSDAE 60

Query: 61  PGL-ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           P     WL +N ++A QWPNI  KK ++P A   +G   K  + FSP    ++ 
Sbjct: 61  PQATAHWLDLNRKHADQWPNIVAKKAAMPDADAENGRAGKAAE-FSPEAATEDA 113


>gi|148284852|ref|YP_001248942.1| ferredoxin [Orientia tsutsugamushi str. Boryong]
 gi|146740291|emb|CAM80671.1| Ferredoxin [Orientia tsutsugamushi str. Boryong]
          Length = 106

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 74/103 (71%), Gaps = 1/103 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT++C+ CK+TDCVEVCPVDCF+EGE  + I P++CIDCGVCE ECPV AIKP+ E
Sbjct: 1   MTYVVTDSCVKCKYTDCVEVCPVDCFHEGEMMVVIDPEKCIDCGVCEAECPVGAIKPEAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             +  W+++  E++ +WP I  KK  LP A        K+EKY
Sbjct: 61  ELI-KWIELGQEFSKKWPQILHKKAPLPQADLYKDKTNKFEKY 102


>gi|86145740|ref|ZP_01064069.1| ferredoxin [Vibrio sp. MED222]
 gi|218676912|ref|YP_002395731.1| Ferredoxin [Vibrio splendidus LGP32]
 gi|85836439|gb|EAQ54568.1| ferredoxin [Vibrio sp. MED222]
 gi|218325180|emb|CAV27087.1| Ferredoxin [Vibrio splendidus LGP32]
          Length = 107

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VV +NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  +  
Sbjct: 1   MAFVVGDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K  +  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKAPMDEAEKWNGVADKL 102


>gi|71064823|ref|YP_263550.1| ferredoxin [Psychrobacter arcticus 273-4]
 gi|71037808|gb|AAZ18116.1| ferredoxin, 4Fe-Fs binding domain [Psychrobacter arcticus 273-4]
          Length = 107

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCILCK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCILCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++ ++N E A +WPNIT  KE +P AAK DGV+ K +
Sbjct: 61  VPKGQEMFTQLNEELAQKWPNITEMKEQMPEAAKWDGVEGKIQ 103


>gi|119476595|ref|ZP_01616905.1| 7-Fe ferredoxin [marine gamma proteobacterium HTCC2143]
 gi|119449851|gb|EAW31087.1| 7-Fe ferredoxin [marine gamma proteobacterium HTCC2143]
          Length = 107

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEQCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                ++++++N+E A  WPNIT  K     A +      K E  
Sbjct: 61  LPEDQQVFMELNTELAEVWPNITEIKAPPADAEEWAHKPNKLELL 105


>gi|300112903|ref|YP_003759478.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Nitrosococcus watsonii C-113]
 gi|299538840|gb|ADJ27157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           watsonii C-113]
          Length = 112

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  +  
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                + +L+IN+E A  WP IT  KE    A + D +K 
Sbjct: 61  VPKEHQKYLEINAELARSWPVITESKEPPADADQWDRIKN 100


>gi|91983712|gb|ABE68862.1| FdxA [Pseudomonas sp. Q12-87]
          Length = 104

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 102


>gi|83720589|ref|YP_442231.1| ferredoxin [Burkholderia thailandensis E264]
 gi|167581116|ref|ZP_02373990.1| ferredoxin [Burkholderia thailandensis TXDOH]
 gi|167619199|ref|ZP_02387830.1| ferredoxin [Burkholderia thailandensis Bt4]
 gi|257138424|ref|ZP_05586686.1| ferredoxin [Burkholderia thailandensis E264]
 gi|83654414|gb|ABC38477.1| ferredoxin [Burkholderia thailandensis E264]
          Length = 107

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTELNAELAKAWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|255020217|ref|ZP_05292286.1| putative ferredoxin [Acidithiobacillus caldus ATCC 51756]
 gi|254970359|gb|EET27852.1| putative ferredoxin [Acidithiobacillus caldus ATCC 51756]
          Length = 108

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 64/105 (60%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTENCI CK+TDC EVCPV+CF+EG NFLAI P ECIDC  C PECP DAI    D
Sbjct: 1   MTYVVTENCIQCKYTDCAEVCPVECFHEGPNFLAIDPVECIDCAACVPECPADAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  +  +N+E +  WP I  KK +   A + +G   K    
Sbjct: 61  VPEDQRDFTALNAELSKHWPVILRKKAAPADADEWNGKPGKRPLL 105


>gi|74316053|ref|YP_313793.1| 7Fe ferredoxin [Thiobacillus denitrificans ATCC 25259]
 gi|74055548|gb|AAZ95988.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Thiobacillus denitrificans ATCC 25259]
          Length = 107

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVT+ C+ CK+TDCV+VCPVDCF+EG NFLAI P+ECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTDACVKCKYTDCVDVCPVDCFHEGPNFLAIDPEECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E A  W  I  + + LP A +  GVK K +
Sbjct: 61  VPDDQRAYIALNAELAKAWKVIVERHDPLPDADEWAGVKDKIK 103


>gi|91789908|ref|YP_550860.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91699133|gb|ABE45962.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 109

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 67/102 (65%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CI CK+TDCV+VCPVDCF EG +FL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVTDACIKCKYTDCVDVCPVDCFREGPDFLVIDPDECIDCAVCIPECPVNAIYADTD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
           T    + +L++N   A  WP ++ +   LP+A +      K 
Sbjct: 61  TPGQFQPFLELNERLAKLWPTLSRRTAPLPTAEQWKDKTGKL 102


>gi|332992178|gb|AEF02233.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Alteromonas sp.
           SN2]
          Length = 108

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/102 (54%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFLAI P  CIDC +C PECP DAI  DT 
Sbjct: 1   MTFVVTDNCINCKYTDCVAVCPVDAFFEGPNFLAIDPAICIDCALCVPECPADAIVQDTH 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                + +L IN E A +WPNI   K     A   +GV  K 
Sbjct: 61  LTDAQKPYLAINEELAAKWPNIIELKAPPEDADVWNGVPDKL 102


>gi|300310955|ref|YP_003775047.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
 gi|300073740|gb|ADJ63139.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT++C+ C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E +  WP+IT  K  LP A +      K +
Sbjct: 61  VPADQQQYIALNAELSRSWPSITKTKAPLPEAEEWKDKTDKLQ 103


>gi|29653919|ref|NP_819611.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|153208803|ref|ZP_01947030.1| ferrodoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154706253|ref|YP_001424826.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161829743|ref|YP_001596509.1| ferrodoxin [Coxiella burnetii RSA 331]
 gi|165919089|ref|ZP_02219175.1| ferrodoxin [Coxiella burnetii RSA 334]
 gi|212212928|ref|YP_002303864.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212218799|ref|YP_002305586.1| ferredoxin [Coxiella burnetii CbuK_Q154]
 gi|29541182|gb|AAO90125.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|120575709|gb|EAX32333.1| ferrodoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154355539|gb|ABS77001.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161761610|gb|ABX77252.1| ferrodoxin [Coxiella burnetii RSA 331]
 gi|165917223|gb|EDR35827.1| ferrodoxin [Coxiella burnetii RSA 334]
 gi|212011338|gb|ACJ18719.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212013061|gb|ACJ20441.1| ferredoxin [Coxiella burnetii CbuK_Q154]
          Length = 111

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 72/110 (65%), Gaps = 2/110 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV +NCI CK+TDCVEVCPVDCF EG N L I PDECIDC +C PECPVDAI  + +
Sbjct: 1   MTFVVIDNCIRCKYTDCVEVCPVDCFREGPNMLVIDPDECIDCNLCVPECPVDAIFAEDD 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
              E   +L++N++ A +WP IT KKE+ P A     V  K +      P
Sbjct: 61  LPEEKHAFLEMNADLAKRWPLITAKKEAPPDADDWTEVPDKLQYLEEEWP 110


>gi|187729714|ref|YP_001837303.1| ferredoxin-like protein [Acidithiobacillus caldus]
 gi|167782099|gb|ACA00170.1| ferredoxin-like protein [Acidithiobacillus caldus]
          Length = 107

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NC+ CK+ DCV+VCPVDCF+EG+NFL I P  CIDCGVCEPECP  AI  D++
Sbjct: 1   MTYVVTDNCVNCKYMDCVDVCPVDCFHEGKNFLVIDPSVCIDCGVCEPECPASAIYKDSD 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              E   +L IN + ++ WP I  KK+ LP A K DG+  K 
Sbjct: 61  LPDEFVAYLDINKKLSSSWPLIKYKKDELPEAHKWDGIPNKR 102


>gi|91983682|gb|ABE68847.1| FdxA [Pseudomonas sp. Q65c-80]
 gi|91983716|gb|ABE68864.1| FdxA [Pseudomonas sp. TM1A3]
 gi|91983718|gb|ABE68865.1| FdxA [Pseudomonas sp. C*1A1]
 gi|91983720|gb|ABE68866.1| FdxA [Pseudomonas sp. TM1B2]
 gi|91983732|gb|ABE68872.1| FdxA [Pseudomonas sp. K93.3]
 gi|91983734|gb|ABE68873.1| FdxA [Pseudomonas sp. P96.25]
          Length = 104

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 102


>gi|91983728|gb|ABE68870.1| FdxA [Pseudomonas sp. P97.6]
          Length = 104

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  GQENFIELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 102


>gi|332532550|ref|ZP_08408427.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037971|gb|EGI74419.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 107

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECSADAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP IT  K +   A   +G+  K +  
Sbjct: 61  LPESQKEFTELNAELALVWPRITEVKPAPEDADVWNGIDDKLKLL 105


>gi|120611719|ref|YP_971397.1| 4Fe-4S ferredoxin [Acidovorax citrulli AAC00-1]
 gi|120590183|gb|ABM33623.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           citrulli AAC00-1]
          Length = 107

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 72/107 (67%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+ENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++K+N+E A QW +IT +K SLP A + +G   K      
Sbjct: 61  LPADQQAFIKLNAELAPQWKSITKRKASLPDADEWNGKPGKIADLIR 107


>gi|217968856|ref|YP_002354090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217506183|gb|ACK53194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 117

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 64/115 (55%), Gaps = 2/115 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV +CPVD F EG NFL I P+ECIDC +C  ECPVDAI P+ E
Sbjct: 1   MTHVVTEACIRCKYTDCVSMCPVDAFREGPNFLVIDPEECIDCTLCVAECPVDAIVPEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  +L +N+  A  WP I      LP A     V  K     +   G  + 
Sbjct: 61  LSDEQREYLALNAALAKDWPRIVEAHAPLPDADAWAKVADKRAWLDTARAGDPDA 115


>gi|307730560|ref|YP_003907784.1| putative ferredoxin [Burkholderia sp. CCGE1003]
 gi|307585095|gb|ADN58493.1| putative ferredoxin [Burkholderia sp. CCGE1003]
          Length = 107

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++++N++ A  WP+IT  K  LP A +   VK+K      
Sbjct: 61  VPGDQQNFIELNADLAKSWPSITKTKAPLPEADEFKDVKEKLALLVR 107


>gi|107022176|ref|YP_620503.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia AU
           1054]
 gi|116689122|ref|YP_834745.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia cenocepacia HI2424]
 gi|170732410|ref|YP_001764357.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia cenocepacia MC0-3]
 gi|105892365|gb|ABF75530.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           cenocepacia AU 1054]
 gi|116647211|gb|ABK07852.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           cenocepacia HI2424]
 gi|169815652|gb|ACA90235.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           cenocepacia MC0-3]
          Length = 107

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|194290186|ref|YP_002006093.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193224021|emb|CAQ70030.1| putative FERREDOXIN PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 107

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIELNAELARAWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|57238754|ref|YP_179890.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58578675|ref|YP_196887.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58616738|ref|YP_195937.1| ferredoxin [Ehrlichia ruminantium str. Gardel]
 gi|57160833|emb|CAH57731.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58416350|emb|CAI27463.1| Ferredoxin [Ehrlichia ruminantium str. Gardel]
 gi|58417301|emb|CAI26505.1| Ferredoxin [Ehrlichia ruminantium str. Welgevonden]
          Length = 125

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/123 (47%), Positives = 75/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ +T+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI  D  
Sbjct: 1   MTHFITDRCIKCKYTDCVEVCPVDCFYEGPNMLVIDPDQCIDCGVCIPECPIDAIIADDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + + +IN E++ +W NIT++K  LP A      K K+  YF
Sbjct: 61  IKDILESDNNVLNDEQKSFKKFYEINREFSKKWENITSRKSPLPEAESYKYKKDKF-IYF 119

Query: 105 SPN 107
           + N
Sbjct: 120 NEN 122


>gi|73541973|ref|YP_296493.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72119386|gb|AAZ61649.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 107

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIDLNAELARNWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|170696356|ref|ZP_02887486.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           graminis C4D1M]
 gi|323526893|ref|YP_004229046.1| putative ferredoxin [Burkholderia sp. CCGE1001]
 gi|170138762|gb|EDT06960.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           graminis C4D1M]
 gi|323383895|gb|ADX55986.1| putative ferredoxin [Burkholderia sp. CCGE1001]
          Length = 107

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++++N++ A  WP+IT  K  LP A +   VK+K      
Sbjct: 61  VPGDQQNFIELNADLAKNWPSITKTKAPLPEADEFKDVKEKLALLVR 107


>gi|167563567|ref|ZP_02356483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           oklahomensis EO147]
 gi|167570727|ref|ZP_02363601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           oklahomensis C6786]
          Length = 107

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N++ A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTELNADLAKIWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|77163722|ref|YP_342247.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosococcus oceani ATCC
           19707]
 gi|76882036|gb|ABA56717.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosococcus
           oceani ATCC 19707]
          Length = 112

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  +  
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                + +L IN+E A  WP IT  KE    A + D +K 
Sbjct: 61  VPKEHQKYLGINAELAKSWPVITESKEPPADADQWDRIKN 100


>gi|108762705|ref|YP_631259.1| ferrodoxin, 4Fe-4S [Myxococcus xanthus DK 1622]
 gi|108466585|gb|ABF91770.1| ferrodoxin, 4Fe-4S [Myxococcus xanthus DK 1622]
          Length = 111

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 3/112 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV + CI CK+TDCVEVCPV+CFYEG NFL IHPDECIDCG CEP CP  AI P+TE
Sbjct: 1   MAYVVADPCIKCKYTDCVEVCPVNCFYEGANFLVIHPDECIDCGACEPVCPTKAIFPETE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                + +  +N++ +T+WPNI  KK +LP A +      K      P PG 
Sbjct: 61  LPEQWKEYKALNADLSTKWPNIAEKKSALPEAEEFKSKDGKRS-LLDPAPGS 111


>gi|167837385|ref|ZP_02464268.1| 4Fe-4S ferredoxin [Burkholderia thailandensis MSMB43]
          Length = 107

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|50956566|gb|AAT90813.1| probable ferredoxin [uncultured proteobacterium QS1]
          Length = 124

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI C+HT CV++CP D F+ G NF+ I PDEC+DCG+C PECP +AI+P+++
Sbjct: 1   MTYVVTDNCIQCRHTSCVDICPADAFHLGPNFIVISPDECVDCGLCLPECPEEAIEPESQ 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  +L++N+E A +WP I  + E LP   K    + K  
Sbjct: 61  LNDSNYHFLRLNAELAERWPVILQRIEPLPDYQKWSRQENKLP 103


>gi|297538391|ref|YP_003674160.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylotenera sp. 301]
 gi|297257738|gb|ADI29583.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylotenera
           sp. 301]
          Length = 107

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 71/107 (66%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTENCI CK TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI    D
Sbjct: 1   MTYVVTENCIQCKFTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++ +N+  A  WP IT++K +L  A  M+GV  K +    
Sbjct: 61  VPADQQEFIALNARLAELWPVITSRKAALEDAEAMNGVPGKRDLLIE 107


>gi|17545833|ref|NP_519235.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17428127|emb|CAD14816.1| probable ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 108

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/109 (55%), Positives = 72/109 (66%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + W+ IN+E A   WP+IT  K  LP A +   VK K E+Y   
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKSPLPDAEEWKDVKDK-EQYLER 108


>gi|332186983|ref|ZP_08388724.1| 4Fe-4S binding domain protein [Sphingomonas sp. S17]
 gi|332012993|gb|EGI55057.1| 4Fe-4S binding domain protein [Sphingomonas sp. S17]
          Length = 99

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/99 (63%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
            DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE GLE WL++N+ ++
Sbjct: 1   MDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTESGLEQWLELNTTFS 60

Query: 75  TQWPNITTKKE-SLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            QWPN+T K + + P A  M GV+ KYE++FSP PG  +
Sbjct: 61  AQWPNVTRKLDQTPPDADAMKGVENKYEQFFSPEPGKGD 99


>gi|91983672|gb|ABE68842.1| FdxA [Pseudomonas protegens]
          Length = 103

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/101 (60%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PG 62
           VT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E    
Sbjct: 1   VTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPEE 60

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           ++ ++++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  MQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 101


>gi|222102197|ref|YP_002546787.1| hypothetical protein Arad_12331 [Agrobacterium radiobacter K84]
 gi|221728314|gb|ACM31323.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 107

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VVTENCI CK  DCVE CPV+CF+EG NFL I+P ECIDCGVCEP CP +AI P  +
Sbjct: 1   MTFVVTENCIKCKFQDCVEACPVNCFHEGPNFLVINPSECIDCGVCEPVCPAEAIYPLEE 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  +  +NSE A +WP IT K      A+  DG + K 
Sbjct: 61  LPVEQAAFAALNSELAAEWPVITIKGPPPADASIWDGKRGKL 102


>gi|30580420|sp|Q44037|FER1_AFIFE RecName: Full=Ferredoxin-1
 gi|550302|emb|CAA57420.1| ferredoxin [Afipia felis]
          Length = 93

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 69/93 (74%), Positives = 76/93 (81%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
            LE WL +N+EYA  WPNIT KK++   A + 
Sbjct: 61 QNLEKWLGVNAEYAKTWPNITQKKDAPADAKEF 93


>gi|253999231|ref|YP_003051294.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylovorus sp. SIP3-4]
 gi|313201319|ref|YP_004039977.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylovorus sp. MP688]
 gi|253985910|gb|ACT50767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylovorus
           sp. SIP3-4]
 gi|312440635|gb|ADQ84741.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylovorus
           sp. MP688]
          Length = 107

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTENCI CK+TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI    D
Sbjct: 1   MAYVVTENCIQCKYTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++ +N+  +  WP IT +K+ LP A   +G   K +    
Sbjct: 61  VPADQQEFIALNARLSAIWPTITGRKDPLPDADSNNGKAGKRDLLVE 107


>gi|113868553|ref|YP_727042.1| ferredoxin [Ralstonia eutropha H16]
 gi|113527329|emb|CAJ93674.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 107

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFINLNAELARNWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|91983710|gb|ABE68861.1| FdxA [Pseudomonas sp. Q13-87]
 gi|91983726|gb|ABE68869.1| FdxA [Pseudomonas sp. Q7-87]
          Length = 104

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 102


>gi|91783228|ref|YP_558434.1| putative 4Fe-4S ferredoxin [Burkholderia xenovorans LB400]
 gi|91687182|gb|ABE30382.1| Putative 4Fe-4S ferredoxin [Burkholderia xenovorans LB400]
          Length = 107

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 70/102 (68%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIQCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  ++K+N+E A +WP IT  K  L  A +   VK K+
Sbjct: 61  VPRDQRHFIKLNAELARRWPGITKTKAPLAEADRFKDVKDKF 102


>gi|91983730|gb|ABE68871.1| FdxA [Pseudomonas sp. P97.26]
          Length = 104

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPT 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT +K++LP AA+ DG   K    
Sbjct: 61  GMENFIELNAELADIWPNITERKDALPDAAEWDGKPGKIADL 102


>gi|91983686|gb|ABE68849.1| FdxA [Pseudomonas sp. PITR2]
          Length = 104

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPT 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKTGKIADL 102


>gi|198283226|ref|YP_002219547.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668155|ref|YP_002425458.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247747|gb|ACH83340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520368|gb|ACK80954.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 107

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +CEPECP  AI  D  
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCEPECPAGAIFRDDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G + + +IN+  A  WP I  KK +   A     VK K 
Sbjct: 61  MPDGQKEFEEINARLAKIWPAIIQKKAAPEDADAWLHVKDKR 102


>gi|134295130|ref|YP_001118865.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia vietnamiensis G4]
 gi|134138287|gb|ABO54030.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           vietnamiensis G4]
 gi|325527386|gb|EGD04739.1| ferredoxin [Burkholderia sp. TJI49]
          Length = 107

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTALNAELAKNWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|161525374|ref|YP_001580386.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia multivorans ATCC 17616]
 gi|189349889|ref|YP_001945517.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|160342803|gb|ABX15889.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189333911|dbj|BAG42981.1| ferredoxin [Burkholderia multivorans ATCC 17616]
          Length = 107

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|300691906|ref|YP_003752901.1| ferredoxin (fdxA) [Ralstonia solanacearum PSI07]
 gi|299078966|emb|CBJ51626.1| Ferredoxin (fdxA) [Ralstonia solanacearum PSI07]
          Length = 108

 Score =  106 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/109 (55%), Positives = 72/109 (66%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + W+ IN+E A   WP+IT  K  LP A +   VK K E+Y   
Sbjct: 61  VPADQQKWIAINAELAQSGWPSITKTKSPLPDAEEWKDVKDK-EQYLER 108


>gi|88705822|ref|ZP_01103531.1| Ferredoxin [Congregibacter litoralis KT71]
 gi|88699893|gb|EAQ97003.1| Ferredoxin [Congregibacter litoralis KT71]
          Length = 107

 Score =  106 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/102 (58%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEDCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +++L++N+E A  WP IT  K +   A +  G   K 
Sbjct: 61  LPADQQVFLELNAELAEVWPCITEMKPAPEDAEEWAGKPGKL 102


>gi|253996373|ref|YP_003048437.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylotenera mobilis JLW8]
 gi|253983052|gb|ACT47910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylotenera
           mobilis JLW8]
          Length = 107

 Score =  106 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTENCI CK TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI    D
Sbjct: 1   MTYVVTENCIQCKFTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++ +N+  A  WP IT +KE+LP A  M+G   K      
Sbjct: 61  VPADQQEYIALNARLAQVWPTITARKEALPDAEAMNGAPNKRSLLVE 107


>gi|91983680|gb|ABE68846.1| FdxA [Pseudomonas sp. F113]
          Length = 104

 Score =  106 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKIADL 102


>gi|28199843|ref|NP_780157.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|71275225|ref|ZP_00651512.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Dixon]
 gi|71899554|ref|ZP_00681710.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|71899939|ref|ZP_00682086.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|170731220|ref|YP_001776653.1| ferredoxin [Xylella fastidiosa M12]
 gi|182682594|ref|YP_001830754.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xylella fastidiosa M23]
 gi|28057964|gb|AAO29806.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|71164034|gb|EAO13749.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Dixon]
 gi|71730302|gb|EAO32386.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|71730683|gb|EAO32758.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|167966013|gb|ACA13023.1| ferredoxin [Xylella fastidiosa M12]
 gi|182632704|gb|ACB93480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xylella
           fastidiosa M23]
 gi|307578876|gb|ADN62845.1| ferredoxin [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 107

 Score =  106 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCINCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +  + +N+E A  WP +T ++E +P AA+ +G   K 
Sbjct: 61  VPTEQKQCIALNAELAKAWPVVTVRREPMPDAAEWNGKPDKL 102


>gi|224826355|ref|ZP_03699457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Lutiella
           nitroferrum 2002]
 gi|224601456|gb|EEG07637.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Lutiella
           nitroferrum 2002]
          Length = 107

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTE CI CK+TDCV+VCPVDCF+EG NFLAI PDECIDC +C  ECPV+AI    D
Sbjct: 1   MAYVVTEACIKCKYTDCVDVCPVDCFHEGPNFLAIDPDECIDCTLCVAECPVEAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                  +++IN   +  WP I  KK+ LP       V  K
Sbjct: 61  VPADQLHFIEINDRLSKVWPVIAAKKDPLPDHEDWAKVTGK 101


>gi|238026583|ref|YP_002910814.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia glumae BGR1]
 gi|237875777|gb|ACR28110.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia glumae BGR1]
          Length = 107

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTPLNAELAKLWPSITKTKPAPGDADEWKDVQDKLHLL 105


>gi|15839190|ref|NP_299878.1| ferredoxin [Xylella fastidiosa 9a5c]
 gi|9107823|gb|AAF85398.1|AE004067_5 ferredoxin [Xylella fastidiosa 9a5c]
          Length = 107

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCINCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +  + +N+E A  WP +T ++E +P AA+ DG   K 
Sbjct: 61  VPTEQKQCIALNAELAKAWPVVTVRREPMPDAAEWDGKPDKL 102


>gi|296932695|gb|ADH93501.1| ferredoxin I [Pseudomonas sp. In5]
          Length = 104

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPE 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ ++++N E A  WPNIT KKES+P A + DGVK K +  
Sbjct: 61  EMQEFIQLNVELAEIWPNITEKKESMPDAEEWDGVKGKIKDL 102


>gi|115351029|ref|YP_772868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia ambifaria AMMD]
 gi|170700862|ref|ZP_02891850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria IOP40-10]
 gi|171317138|ref|ZP_02906340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MEX-5]
 gi|172060034|ref|YP_001807686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia ambifaria MC40-6]
 gi|115281017|gb|ABI86534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           ambifaria AMMD]
 gi|170134225|gb|EDT02565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria IOP40-10]
 gi|171097705|gb|EDT42535.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MEX-5]
 gi|171992551|gb|ACB63470.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MC40-6]
          Length = 107

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|78065684|ref|YP_368453.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
 gi|77966429|gb|ABB07809.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
          Length = 107

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|206559364|ref|YP_002230125.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|206561234|ref|YP_002231999.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|198035402|emb|CAR51278.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|198037276|emb|CAR53198.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
          Length = 107

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPTDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|209521147|ref|ZP_03269874.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. H160]
 gi|295677210|ref|YP_003605734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. CCGE1002]
 gi|209498422|gb|EDZ98550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. H160]
 gi|295437053|gb|ADG16223.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. CCGE1002]
          Length = 107

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++ +N++ A  WP+IT  K  LP A +   VK+K      
Sbjct: 61  VPGDQQDFIALNADLAKAWPSITKTKAPLPEAEEFKDVKEKLALLVR 107


>gi|160900089|ref|YP_001565671.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160365673|gb|ABX37286.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Delftia
           acidovorans SPH-1]
          Length = 109

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 71/107 (66%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++K+N+E +    W +IT +K SLP A   +G   K ++ 
Sbjct: 61  VPADQLAFIKLNAELSLEKGWKSITKRKASLPDADDWNGKPGKLDQL 107


>gi|330815952|ref|YP_004359657.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           gladioli BSR3]
 gi|327368345|gb|AEA59701.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           gladioli BSR3]
          Length = 107

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFAPLNAELAKLWPSITKTKPAPGDADEWKDVQDKLHLL 105


>gi|241662657|ref|YP_002981017.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|309781213|ref|ZP_07675950.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
 gi|240864684|gb|ACS62345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
 gi|308920034|gb|EFP65694.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
          Length = 109

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 60/109 (55%), Positives = 72/109 (66%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + W+ IN+E A   WP+IT  K+ LP A     VK K E+Y   
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKQPLPDADDWKDVKDK-EQYLDR 108


>gi|91788203|ref|YP_549155.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91697428|gb|ABE44257.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 109

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT++V+E+CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHIVSESCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                  ++K+N+E +    W +IT +K++LP A +      K ++   
Sbjct: 61  VPADQLQFIKLNAELSRAAGWKSITKRKDALPDAEEWKDKTGKLDELVR 109


>gi|226951441|ref|ZP_03821905.1| 7-Fe ferredoxin [Acinetobacter sp. ATCC 27244]
 gi|262373026|ref|ZP_06066305.1| ferredoxin [Acinetobacter junii SH205]
 gi|294650963|ref|ZP_06728304.1| ferredoxin 1 [Acinetobacter haemolyticus ATCC 19194]
 gi|226837808|gb|EEH70191.1| 7-Fe ferredoxin [Acinetobacter sp. ATCC 27244]
 gi|262313051|gb|EEY94136.1| ferredoxin [Acinetobacter junii SH205]
 gi|292823144|gb|EFF82006.1| ferredoxin 1 [Acinetobacter haemolyticus ATCC 19194]
          Length = 109

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 4/105 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +W   NIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSEKWAGNNITQIGEQPADREEWNGKPNKLQ 105


>gi|53720069|ref|YP_109055.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|76809315|ref|YP_334313.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|124383747|ref|YP_001028729.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126441887|ref|YP_001059835.1| ferredoxin [Burkholderia pseudomallei 668]
 gi|126453420|ref|YP_001067122.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|134277063|ref|ZP_01763778.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|167002775|ref|ZP_02268565.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|167720598|ref|ZP_02403834.1| putative ferredoxin [Burkholderia pseudomallei DM98]
 gi|167739587|ref|ZP_02412361.1| putative ferredoxin [Burkholderia pseudomallei 14]
 gi|167816790|ref|ZP_02448470.1| putative ferredoxin [Burkholderia pseudomallei 91]
 gi|167825197|ref|ZP_02456668.1| putative ferredoxin [Burkholderia pseudomallei 9]
 gi|167846694|ref|ZP_02472202.1| putative ferredoxin [Burkholderia pseudomallei B7210]
 gi|167903669|ref|ZP_02490874.1| putative ferredoxin [Burkholderia pseudomallei NCTC 13177]
 gi|167911917|ref|ZP_02499008.1| putative ferredoxin [Burkholderia pseudomallei 112]
 gi|217420695|ref|ZP_03452200.1| ferredoxin-1 [Burkholderia pseudomallei 576]
 gi|242316088|ref|ZP_04815104.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|254191212|ref|ZP_04897716.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|254195729|ref|ZP_04902155.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|254261489|ref|ZP_04952543.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|262193289|ref|YP_001081365.2| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|52210483|emb|CAH36466.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|76578768|gb|ABA48243.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|124291767|gb|ABN01036.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126221380|gb|ABN84886.1| ferredoxin-1 [Burkholderia pseudomallei 668]
 gi|126227062|gb|ABN90602.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|134250713|gb|EBA50792.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|157938884|gb|EDO94554.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|169652474|gb|EDS85167.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|217396107|gb|EEC36124.1| ferredoxin-1 [Burkholderia pseudomallei 576]
 gi|242139327|gb|EES25729.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|243061597|gb|EES43783.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|254220178|gb|EET09562.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|261835061|gb|ABO05614.2| ferredoxin [Burkholderia mallei NCTC 10247]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPGDQQHFTALNAELAKDWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|167895283|ref|ZP_02482685.1| putative ferredoxin [Burkholderia pseudomallei 7894]
 gi|167919911|ref|ZP_02507002.1| putative ferredoxin [Burkholderia pseudomallei BCC215]
 gi|237813231|ref|YP_002897682.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|237504029|gb|ACQ96347.1| ferredoxin [Burkholderia pseudomallei MSHR346]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|91983678|gb|ABE68845.1| FdxA [Pseudomonas sp. PILH1]
          Length = 104

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/102 (59%), Positives = 74/102 (72%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK+ +P A + DG   K    
Sbjct: 61  GMENFIELNAELADVWPNITEKKDPMPGAEEWDGKTGKIADL 102


>gi|148973892|ref|ZP_01811425.1| ferredoxin [Vibrionales bacterium SWAT-3]
 gi|145965589|gb|EDK30837.1| ferredoxin [Vibrionales bacterium SWAT-3]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV +NCI CK+TD V VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVGDNCIQCKYTDFVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K ++  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKPAMDDAEKWNGVPDKL 102


>gi|134094047|ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas arsenicoxydans]
 gi|133737950|emb|CAL60995.1| Ferredoxin-1 (Ferredoxin I) (FdI) [Herminiimonas arsenicoxydans]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT++C+LC++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTDSCVLCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++K+N E +  WP+IT  K  LP A +      K +
Sbjct: 61  VPADQQHYIKLNVELSRNWPSITKTKAPLPEAEEWKDKTDKLQ 103


>gi|119474975|ref|ZP_01615328.1| ferredoxin, 4Fe-4S [marine gamma proteobacterium HTCC2143]
 gi|119451178|gb|EAW32411.1| ferredoxin, 4Fe-4S [marine gamma proteobacterium HTCC2143]
          Length = 112

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/108 (48%), Positives = 66/108 (61%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VVTE CI CK TDCV+VCPVDCF+EG NFL I+PD CIDC +C PECPVDAI    D
Sbjct: 1   MTFVVTEQCIKCKFTDCVDVCPVDCFHEGPNFLVINPDGCIDCALCIPECPVDAIYEESD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + ++KIN++ + +WP I   ++ L  A        K       
Sbjct: 61  LPDEFQEYIKINADLSARWPEILATQDPLEDAEDWADKPDKRGALILE 108


>gi|34497002|ref|NP_901217.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34102859|gb|AAQ59223.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
          Length = 112

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MTYVV  +CI CKH+DCV+VCP D F+EG N LAI+PD+CIDCG+C PECP+DAI+ D  
Sbjct: 1   MTYVVLSDCIGCKHSDCVDVCPTDSFHEGPNMLAINPDDCIDCGLCVPECPIDAIREDKA 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                   + +N+E A +WPNIT  K +LP A    G   K +
Sbjct: 61  VPSHEHGMIALNAELAQRWPNITKSKPALPEAEAWRGRPDKLQ 103


>gi|33594451|ref|NP_882095.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|33564526|emb|CAE43841.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|332383862|gb|AEE68709.1| ferredoxin [Bordetella pertussis CS]
          Length = 107

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E + ++P+I+  K+ L  A + +GV+ K +
Sbjct: 61  VPQDQVPFIALNVELSAEFPSISRAKKPLEDADQWNGVQDKLQ 103


>gi|186475572|ref|YP_001857042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia phymatum STM815]
 gi|184192031|gb|ACC69996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phymatum STM815]
          Length = 107

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                + +  +N+E A  WP+IT  K  LP A     VK+K 
Sbjct: 61  VPGDQQHFTALNAELAKAWPSITKTKSPLPEADDFKDVKEKL 102


>gi|121611231|ref|YP_999038.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121555871|gb|ABM60020.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 109

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 72/109 (66%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                  ++K+N++  +A  W +IT +K +LP A + +G   K ++   
Sbjct: 61  LPADQLAFIKLNADLAFAAGWKSITKRKGALPDADEWNGKPGKVDQLIR 109


>gi|149926235|ref|ZP_01914497.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149825053|gb|EDM84265.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 107

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E A  WP+IT  K  LP A     VK K +
Sbjct: 61  VPADQVKFIDMNVELAKDWPSITRMKAHLPDADDWKDVKDKLQ 103


>gi|167586594|ref|ZP_02378982.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           ubonensis Bu]
          Length = 107

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPSDQQQFTALNAELAKNWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|89902899|ref|YP_525370.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89347636|gb|ABD71839.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 107

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI CK+TDCV+VCPVD F EG NFLAI PDECIDC VC PECPV+AI    D
Sbjct: 1   MTFVVTESCISCKYTDCVDVCPVDAFREGPNFLAIDPDECIDCAVCVPECPVNAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N+E A +W  IT  K +LP A K   V  K  + 
Sbjct: 61  VPADQQDFIALNAELAPKWKTITRTKAALPDADKWASVAAKRAEL 105


>gi|163856039|ref|YP_001630337.1| ferredoxin 1 (FdI) [Bordetella petrii DSM 12804]
 gi|163259767|emb|CAP42068.1| Ferredoxin 1 (FdI) [Bordetella petrii]
          Length = 107

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E   ++  I+  K+ LP A + +GV  K +  
Sbjct: 61  VPQDQVQFIALNAELTPEFAPISRAKKPLPDADEWNGVPDKLQHL 105


>gi|83749935|ref|ZP_00946892.1| Ferredoxin [Ralstonia solanacearum UW551]
 gi|83723395|gb|EAP70616.1| Ferredoxin [Ralstonia solanacearum UW551]
          Length = 145

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 5/116 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI    D
Sbjct: 28  MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAEAD 87

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF-SPNPGGK 111
                  ++ +N++ + +  WP +T  +  L   A+   VK K      +P PG +
Sbjct: 88  VPADQREFIALNAQLSRRPDWPRLTQVQPPLADHARWAQVKDKRSTLLIAPEPGTQ 143


>gi|187928049|ref|YP_001898536.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|187724939|gb|ACD26104.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
          Length = 109

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/109 (55%), Positives = 71/109 (65%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + W+ IN E A   WP+IT  K+ LP A     VK K E+Y   
Sbjct: 61  VPADQQKWIAINVELAQAGWPSITKTKQPLPDADDWKDVKDK-EQYLDR 108


>gi|91199775|emb|CAI78130.1| putative ferredoxin [Streptomyces ambofaciens ATCC 23877]
 gi|126347479|emb|CAJ89187.1| putative ferredoxin [Streptomyces ambofaciens ATCC 23877]
          Length = 118

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/110 (50%), Positives = 72/110 (65%), Gaps = 3/110 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
           TYVV E CI C+ TDCV+VCPVDCF+ GEN L IHP ECIDCG C PECPV AI  ++E 
Sbjct: 9   TYVVAEPCIRCRTTDCVDVCPVDCFHAGENMLVIHPYECIDCGACVPECPVSAIFEESEL 68

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                 + ++N EYA +WP IT+K ++         V+ K + +F+P PG
Sbjct: 69  PAKWGEYTELNLEYADKWPVITSKADAPSDWENWRDVEPKKQ-HFNPAPG 117


>gi|121594158|ref|YP_986054.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222111124|ref|YP_002553388.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120606238|gb|ABM41978.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221730568|gb|ACM33388.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 107

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++KIN+E   ++ +IT +K +LP A   +G   K ++ 
Sbjct: 61  LPSDQLAFIKINAELTPKFKSITKRKAALPDADDWNGKPGKLDQL 105


>gi|317401942|gb|EFV82546.1| ferredoxin 1 [Achromobacter xylosoxidans C54]
          Length = 107

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   ++ +N+E + ++ +I+  K+ LP A + +G + K +
Sbjct: 61  VPQDQLNFIALNAELSPEFASISRAKKPLPDADEWNGKQDKLQ 103


>gi|300704516|ref|YP_003746119.1| ferredoxin (fdxa) [Ralstonia solanacearum CFBP2957]
 gi|299072180|emb|CBJ43512.1| Ferredoxin (fdxA) [Ralstonia solanacearum CFBP2957]
          Length = 108

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/109 (55%), Positives = 72/109 (66%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + W+ IN+E A   WP+IT  K  LP A +   VK K E+Y   
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKSPLPEADQWKDVKDK-EQYLER 108


>gi|53725758|ref|YP_102306.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|254199200|ref|ZP_04905566.1| ferredoxin [Burkholderia mallei FMH]
 gi|52429181|gb|AAU49774.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|147748796|gb|EDK55870.1| ferredoxin [Burkholderia mallei FMH]
          Length = 107

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPGDQQHFTALNAELAKDWPSITKTKPAPADANEWKDVQEKLHLL 105


>gi|311104718|ref|YP_003977571.1| ferredoxin 2 [Achromobacter xylosoxidans A8]
 gi|310759407|gb|ADP14856.1| ferredoxin 2 [Achromobacter xylosoxidans A8]
          Length = 107

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E + ++ +I+  K+ LP A + +G + K +
Sbjct: 61  VPQDQMNFIALNAELSPEFASISRAKKPLPDADEWNGKQDKLQ 103


>gi|224588329|gb|ACN58953.1| ferredoxin [uncultured bacterium BLR10]
          Length = 107

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF +G NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCISCRYTDCVDVCPVDCFRQGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + ++KIN + A  WP+IT     LP A +   VK+K      
Sbjct: 61  VPGDQQQFIKINVDLARNWPSITKTVSPLPEADQFKDVKEKLHLLVR 107


>gi|56478031|ref|YP_159620.1| ferredoxin [Aromatoleum aromaticum EbN1]
 gi|56314074|emb|CAI08719.1| ferredoxin [Aromatoleum aromaticum EbN1]
          Length = 107

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 61/103 (59%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE CI CKHTDCV+VCP D F EG NFL I P+ECIDC +C  ECPVDAI  D  
Sbjct: 1   MTYVVTEACIKCKHTDCVDVCPTDAFREGPNFLVIDPEECIDCTLCVAECPVDAIYADDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E A +W  I   K +   A     VK K +
Sbjct: 61  VPDDQRQFIALNEELAKEWKPIVEVKPAPEDAGMWATVKDKLK 103


>gi|121605331|ref|YP_982660.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120594300|gb|ABM37739.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 109

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 69/109 (63%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV++ CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVSDPCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEY--ATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                  ++KIN++   A  W +IT +K++LP A +      K  +   
Sbjct: 61  LPSDQLHFIKINADLTSAPGWKSITKRKDALPDADEWKDKTNKLSELVR 109


>gi|190571735|ref|YP_001976093.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019223|ref|ZP_03335030.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190358007|emb|CAQ55475.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995332|gb|EEB55973.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 125

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/126 (51%), Positives = 78/126 (61%), Gaps = 17/126 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + +  IN EY+ +WPNIT KK+SL +A +    K K   YF
Sbjct: 61  IKDILELDEGLLNNEQKIFKSFYNINVEYSQKWPNITAKKQSLDTAEEYKEKKDK-TAYF 119

Query: 105 SPNPGG 110
             N G 
Sbjct: 120 DENLGS 125


>gi|293603978|ref|ZP_06686391.1| O-succinylhomoserine sulfhydrylase [Achromobacter piechaudii ATCC
           43553]
 gi|292817582|gb|EFF76650.1| O-succinylhomoserine sulfhydrylase [Achromobacter piechaudii ATCC
           43553]
          Length = 107

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   ++ +N+E + ++ +I+  K+ LP A   +G + K +
Sbjct: 61  VPQDQLNFIALNAELSPEFASISRAKKPLPDADDWNGKQDKLQ 103


>gi|91983714|gb|ABE68863.1| FdxA [Pseudomonas sp. Q128-87]
          Length = 104

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 2/100 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGL 63
            +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+
Sbjct: 3   PDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGM 62

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           E ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 63  ENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 102


>gi|126454614|ref|YP_001066809.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|167911570|ref|ZP_02498661.1| putative ferredoxin [Burkholderia pseudomallei 112]
 gi|167919580|ref|ZP_02506671.1| putative ferredoxin [Burkholderia pseudomallei BCC215]
 gi|242317545|ref|ZP_04816561.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|126228256|gb|ABN91796.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|242140784|gb|EES27186.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
          Length = 112

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/107 (51%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   +
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRHFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|57339928|gb|AAW49951.1| hypothetical protein FTT1764 [synthetic construct]
          Length = 142

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 68/110 (61%), Gaps = 3/110 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VVTE+CI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPV+AIK   D
Sbjct: 27  MPFVVTESCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVNAIKSSDD 86

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E  L +N E A  WPNI  K E    A     V  K  KY    P
Sbjct: 87  LSENEEQMLDLNRELAGIWPNIVEKCEPCEDADNWASVPDKL-KYLEKYP 135


>gi|58584826|ref|YP_198399.1| ferredoxin [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419142|gb|AAW71157.1| Ferredoxin [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 124

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/123 (52%), Positives = 77/123 (62%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + +  IN EY+ +WPNIT KK+ L +A K    K K   YF
Sbjct: 61  IKDILELDEELLSNEQKTFKSFYNINIEYSQKWPNITAKKQPLHTAEKYKEKKDK-TAYF 119

Query: 105 SPN 107
           + N
Sbjct: 120 NEN 122


>gi|300697403|ref|YP_003748064.1| Ferredoxin 1 [Ralstonia solanacearum CFBP2957]
 gi|299074127|emb|CBJ53671.1| Ferredoxin 1 [Ralstonia solanacearum CFBP2957]
          Length = 116

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 5/114 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI    D
Sbjct: 1   MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAESD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF-SPNPG 109
                  ++ +N++ + +  WP +T  +  L   A+   VK K +    +P PG
Sbjct: 61  VPADQREFIALNAQLSRRPDWPRLTQVQPPLADHARWAQVKDKRDTLLITPEPG 114


>gi|303257808|ref|ZP_07343818.1| ferredoxin, 4Fe-4S [Burkholderiales bacterium 1_1_47]
 gi|330998771|ref|ZP_08322499.1| ferredoxin-1 [Parasutterella excrementihominis YIT 11859]
 gi|302859411|gb|EFL82492.1| ferredoxin, 4Fe-4S [Burkholderiales bacterium 1_1_47]
 gi|329576268|gb|EGG57784.1| ferredoxin-1 [Parasutterella excrementihominis YIT 11859]
          Length = 109

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/108 (50%), Positives = 66/108 (61%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VVTE CILCK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MAHVVTEPCILCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPTNAIMAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + ++ +N+E A  WP+IT  K     A K   V  K +     
Sbjct: 61  VPEDQQEFIALNAELARVWPSITRMKPHTDEAEKWRDVLDKRQYLKKE 108


>gi|167627085|ref|YP_001677585.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|241667647|ref|ZP_04755225.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876192|ref|ZP_05248902.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|167597086|gb|ABZ87084.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|254842213|gb|EET20627.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 107

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VVTENCI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPVDAIK   D
Sbjct: 1   MPFVVTENCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVDAIKSSDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E  L +N E A+ WPNI  K +    A     V  K +
Sbjct: 61  LTESQEQMLDLNRELASIWPNIVEKCDPCEDADNWASVPDKLK 103


>gi|221066142|ref|ZP_03542247.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|264679310|ref|YP_003279217.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|299533455|ref|ZP_07046836.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
 gi|220711165|gb|EED66533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|262209823|gb|ACY33921.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|298718561|gb|EFI59537.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
          Length = 109

 Score =  103 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++K+N + +    W +IT +K SLP A + +G   K +  
Sbjct: 61  VPADQLAFIKLNVDLSQLKSWKSITKRKASLPDADEWNGKPNKVDLL 107


>gi|152982480|ref|YP_001354084.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282557|gb|ABR90967.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 114

 Score =  103 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/106 (43%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M Y+VTE CI CK  DC+EVCP   F+ GENF+ I+PD C++CG+CE  CP  AI  K D
Sbjct: 1   MAYIVTEACIRCKFMDCIEVCPTYAFHAGENFVVINPDTCVNCGLCEMVCPTQAIKAKGD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                 +++++N+  A  WP IT K      A    GV  K E   
Sbjct: 61  ATEKELVFVELNARLAKNWPAITQKGMVPADAGNWIGVSDKKEFLL 106


>gi|53719819|ref|YP_108805.1| ferredoxin I [Burkholderia pseudomallei K96243]
 gi|53724135|ref|YP_103250.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76809614|ref|YP_334029.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121598984|ref|YP_993430.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124386308|ref|YP_001029137.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|134277295|ref|ZP_01764010.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|167824830|ref|ZP_02456301.1| ferredoxin [Burkholderia pseudomallei 9]
 gi|226198916|ref|ZP_03794479.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|238562467|ref|ZP_00440400.2| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|251766955|ref|ZP_02265481.2| ferredoxin [Burkholderia mallei PRL-20]
 gi|254178196|ref|ZP_04884851.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|254191489|ref|ZP_04897993.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|254198288|ref|ZP_04904710.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|254200199|ref|ZP_04906565.1| ferredoxin [Burkholderia mallei FMH]
 gi|254209279|ref|ZP_04915625.1| ferredoxin [Burkholderia mallei JHU]
 gi|254259347|ref|ZP_04950401.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|254297156|ref|ZP_04964609.1| putative ferredoxin [Burkholderia pseudomallei 406e]
 gi|254358050|ref|ZP_04974323.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|262193288|ref|YP_001080939.2| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|52210233|emb|CAH36212.1| ferredoxin I [Burkholderia pseudomallei K96243]
 gi|52427558|gb|AAU48151.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76579067|gb|ABA48542.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121227794|gb|ABM50312.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124294328|gb|ABN03597.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|134250945|gb|EBA51024.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|147749795|gb|EDK56869.1| ferredoxin [Burkholderia mallei FMH]
 gi|147750052|gb|EDK57123.1| ferredoxin [Burkholderia mallei JHU]
 gi|148027177|gb|EDK85198.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|157807005|gb|EDO84175.1| putative ferredoxin [Burkholderia pseudomallei 406e]
 gi|157939161|gb|EDO94831.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|160699235|gb|EDP89205.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|169655029|gb|EDS87722.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|225929016|gb|EEH25040.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|238522582|gb|EEP86025.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|243064296|gb|EES46482.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|254218036|gb|EET07420.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|261835063|gb|ABO05671.2| ferredoxin [Burkholderia mallei NCTC 10247]
          Length = 112

 Score =  103 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   +
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRHFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|237812865|ref|YP_002897316.1| ferredoxin-1 [Burkholderia pseudomallei MSHR346]
 gi|237506519|gb|ACQ98837.1| ferredoxin-1 [Burkholderia pseudomallei MSHR346]
          Length = 112

 Score =  103 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/107 (51%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   +
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRPFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|319793283|ref|YP_004154923.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315595746|gb|ADU36812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 109

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 68/109 (62%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+E CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVSEACIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                  ++KIN+E   A  W +IT +K +LP A +      K  +   
Sbjct: 61  LPANQIAFIKINAELALADGWKSITKRKPALPDAEEWKDKTDKVGELVR 109


>gi|194288740|ref|YP_002004647.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193222575|emb|CAQ68578.1| putative FERREDOXIN [Cupriavidus taiwanensis LMG 19424]
          Length = 109

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 4/104 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI    D
Sbjct: 1   MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKY 100
                  +L +N+E + +  W  +T  K  LP   +  G   + 
Sbjct: 61  LPEDQRHFLALNAELSRRPDWLPLTQAKGPLPDHEQWAGHPDRL 104


>gi|152982663|ref|YP_001352409.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282740|gb|ABR91150.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 107

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CILC++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCILCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                ++++K+N + + +WP+IT  K  +  A +      K +
Sbjct: 61  VPADQQVFIKLNVDLSREWPSITKTKPPMAEAEEWKDKTDKLQ 103


>gi|239815386|ref|YP_002944296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239801963|gb|ACS19030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 109

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 68/109 (62%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+E CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVSEACIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEY--ATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                  ++K+N+E   A  W +IT +K +LP A +      K  +   
Sbjct: 61  LPANQIAFIKLNAELAVADGWKSITKRKPALPDAEEWKDKTDKVGELVR 109


>gi|319943296|ref|ZP_08017579.1| ferredoxin [Lautropia mirabilis ATCC 51599]
 gi|319743838|gb|EFV96242.1| ferredoxin [Lautropia mirabilis ATCC 51599]
          Length = 107

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M ++V +NCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI  + D
Sbjct: 1   MAHIVLDNCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCVPECPAEAIVAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E ++ IN+E A  WP IT  K  L  A   +G   K +
Sbjct: 61  VPGDQENFIAINAEKAPNWPAITRSKSPLEDADDWNGTPNKLQ 103


>gi|42520002|ref|NP_965917.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99035924|ref|ZP_01314971.1| hypothetical protein Wendoof_01000179 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409739|gb|AAS13851.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 124

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 64/123 (52%), Positives = 77/123 (62%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   +L+  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  IKDILELDEELLSSEQKTFKLFYDINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|260221336|emb|CBA29796.1| Ferredoxin-1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 109

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 65/109 (59%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT++VTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHIVTEACIKCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYAT--QWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                +  + +N+E A    W +IT +K  LP A        K  +   
Sbjct: 61  APKDQQHMIALNAELARLPGWKSITKRKAPLPDADDWKDKTGKLSQLIR 109


>gi|329910055|ref|ZP_08275214.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546280|gb|EGF31309.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 107

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIQCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++K+N + +  WP+IT  K +LP A +   ++ K    
Sbjct: 61  VPADQQQFIKLNIDLSRGWPSITKTKAALPEADEFKDMQAKLHLL 105


>gi|241767844|ref|ZP_04765425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241361074|gb|EER57771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 109

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 71/107 (66%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++K+N++  +A  W +IT +K +LP A + +G   K +  
Sbjct: 61  LPADQIAFIKLNADLAFADGWKSITKRKPALPDADEWNGQPGKVKDL 107


>gi|126441756|ref|YP_001059528.1| putative ferredoxin [Burkholderia pseudomallei 668]
 gi|217425596|ref|ZP_03457088.1| putative ferredoxin [Burkholderia pseudomallei 576]
 gi|254184452|ref|ZP_04891042.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|126221249|gb|ABN84755.1| putative ferredoxin [Burkholderia pseudomallei 668]
 gi|184214983|gb|EDU12026.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|217391373|gb|EEC31403.1| putative ferredoxin [Burkholderia pseudomallei 576]
          Length = 112

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   +
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRPFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|91983684|gb|ABE68848.1| FdxA [Pseudomonas sp. CM1A2]
          Length = 103

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 2/100 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGL 63
            +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+
Sbjct: 2   PDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGM 61

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           E ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 62  ENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 101


>gi|58698109|ref|ZP_00373032.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630003|ref|YP_002726794.1| ferredoxin, 4Fe-4S [Wolbachia sp. wRi]
 gi|58535355|gb|EAL59431.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225591984|gb|ACN95003.1| ferredoxin, 4Fe-4S [Wolbachia sp. wRi]
          Length = 124

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/123 (51%), Positives = 76/123 (61%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + +  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  VKDILELDEELLSSEQKTFKSFYNINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|187926655|ref|YP_001893000.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|241666167|ref|YP_002984526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
 gi|187728409|gb|ACD29573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|240868194|gb|ACS65854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 112

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/108 (47%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI P  +
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICVPECPVGAIYPAAE 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N++ +    WP +T  +  LP  A    VK K +   
Sbjct: 61  VPADQQDFIALNAQLSRRADWPRLTKVQPPLPDHAHWAQVKDKRDALV 108


>gi|332529166|ref|ZP_08405130.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
 gi|332041389|gb|EGI77751.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
          Length = 109

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVTEACIRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              G    +K+N+E A    W +IT +K +LP A +      K  + 
Sbjct: 61  VPSGQMHMIKLNAELARAPGWKSITKRKAALPDAEEWKDKTGKLSEL 107


>gi|91983676|gb|ABE68844.1| FdxA [Pseudomonas sp. Q2-87]
          Length = 104

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 2/100 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGL 63
            +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+
Sbjct: 3   PDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGM 62

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 63  ENFIELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 102


>gi|56708759|ref|YP_170655.1| ferredoxin [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89255529|ref|YP_512890.1| ferredoxin [Francisella tularensis subsp. holarctica LVS]
 gi|110671231|ref|YP_667788.1| ferredoxin [Francisella tularensis subsp. tularensis FSC198]
 gi|115314046|ref|YP_762769.1| ferredoxin [Francisella tularensis subsp. holarctica OSU18]
 gi|118498303|ref|YP_899353.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. novicida U112]
 gi|134301185|ref|YP_001121153.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|167010305|ref|ZP_02275236.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656480|ref|YP_001427532.2| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|187930966|ref|YP_001890950.1| ferredoxin-1 [Francisella tularensis subsp. mediasiatica FSC147]
 gi|194323887|ref|ZP_03057662.1| ferredoxin-1 [Francisella tularensis subsp. novicida FTE]
 gi|208780133|ref|ZP_03247476.1| ferredoxin-1 [Francisella novicida FTG]
 gi|224457976|ref|ZP_03666449.1| ferredoxin-1 [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254366956|ref|ZP_04982993.1| ferredoxin [Francisella tularensis subsp. holarctica 257]
 gi|254368509|ref|ZP_04984526.1| ferredoxin [Francisella tularensis subsp. holarctica FSC022]
 gi|254371377|ref|ZP_04987378.1| ferredoxin [Francisella tularensis subsp. tularensis FSC033]
 gi|254371971|ref|ZP_04987464.1| ferredoxin [Francisella tularensis subsp. novicida GA99-3549]
 gi|254375113|ref|ZP_04990593.1| 4Fe-4S binding domain protein [Francisella novicida GA99-3548]
 gi|254875633|ref|ZP_05248343.1| ferredoxin [Francisella tularensis subsp. tularensis MA00-2987]
 gi|290954290|ref|ZP_06558911.1| ferredoxin [Francisella tularensis subsp. holarctica URFT1]
 gi|295312297|ref|ZP_06803087.1| ferredoxin [Francisella tularensis subsp. holarctica URFT1]
 gi|54112673|gb|AAV28970.1| NT02FT0365 [synthetic construct]
 gi|56605251|emb|CAG46397.1| Ferredoxin [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89143360|emb|CAJ78530.1| Ferredoxin [Francisella tularensis subsp. holarctica LVS]
 gi|110321564|emb|CAL09780.1| Ferredoxin [Francisella tularensis subsp. tularensis FSC198]
 gi|115128945|gb|ABI82132.1| ferredoxin [Francisella tularensis subsp. holarctica OSU18]
 gi|118424209|gb|ABK90599.1| 4Fe-4S ferredoxin [Francisella novicida U112]
 gi|134048962|gb|ABO46033.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134252783|gb|EBA51877.1| ferredoxin [Francisella tularensis subsp. holarctica 257]
 gi|151569616|gb|EDN35270.1| ferredoxin [Francisella tularensis subsp. tularensis FSC033]
 gi|151569702|gb|EDN35356.1| ferredoxin [Francisella novicida GA99-3549]
 gi|151572831|gb|EDN38485.1| 4Fe-4S binding domain protein [Francisella novicida GA99-3548]
 gi|157121403|gb|EDO65604.1| ferredoxin [Francisella tularensis subsp. holarctica FSC022]
 gi|164551548|gb|ABU60576.2| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|187711875|gb|ACD30172.1| ferredoxin-1 [Francisella tularensis subsp. mediasiatica FSC147]
 gi|194321784|gb|EDX19267.1| ferredoxin-1 [Francisella tularensis subsp. novicida FTE]
 gi|208744137|gb|EDZ90438.1| ferredoxin-1 [Francisella novicida FTG]
 gi|254841632|gb|EET20068.1| ferredoxin [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282160082|gb|ADA79473.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332184867|gb|AEE27121.1| Ferredoxin [Francisella cf. novicida 3523]
 gi|332679040|gb|AEE88169.1| Ferredoxin [Francisella cf. novicida Fx1]
          Length = 107

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VVTE+CI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPV+AIK   D
Sbjct: 1   MPFVVTESCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVNAIKSSDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E  L +N E A  WPNI  K E    A     V  K +
Sbjct: 61  LSENEEQMLDLNRELAGIWPNIVEKCEPCEDADNWASVPDKLK 103


>gi|154248128|ref|YP_001419086.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Xanthobacter autotrophicus Py2]
 gi|154162213|gb|ABS69429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Xanthobacter autotrophicus Py2]
          Length = 110

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/87 (66%), Positives = 64/87 (73%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTENCI C + DCV VCPVDCFY GEN L IHPDECIDCGVCEPECP  AI PD++
Sbjct: 1  MAYVVTENCIRCTYMDCVSVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAAAIFPDSD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESL 87
          P    W  +N++YA QWPNIT K    
Sbjct: 61 PRAGDWAALNAQYAAQWPNITEKGAPP 87


>gi|91983692|gb|ABE68852.1| FdxA [Pseudomonas sp. F96.27]
 gi|91983702|gb|ABE68857.1| FdxA [Pseudomonas sp. P97.38]
          Length = 101

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G E
Sbjct: 1   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGQE 60

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  NFIELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 99


>gi|300693746|ref|YP_003749719.1| ferredoxin 1 [Ralstonia solanacearum PSI07]
 gi|299075783|emb|CBJ35088.1| Ferredoxin 1 [Ralstonia solanacearum PSI07]
          Length = 112

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/108 (46%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI    D
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ +    WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|91983698|gb|ABE68855.1| FdxA [Pseudomonas sp. P97.30]
 gi|91983700|gb|ABE68856.1| FdxA [Pseudomonas sp. K94.31]
          Length = 101

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 1   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 60

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  NFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 99


>gi|239948395|ref|ZP_04700148.1| ferredoxin [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922671|gb|EER22695.1| ferredoxin [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 109

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/107 (57%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCIPDCPIDAIKPESP 60

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
             +E W++   ++     W NIT KK +LP A K    K K+ KY +
Sbjct: 61  ELIE-WVERAKDFIENKGWKNITKKKPALPDADKFKDEKDKFNKYIN 106


>gi|300311230|ref|YP_003775322.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
 gi|300074015|gb|ADJ63414.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/107 (47%), Positives = 62/107 (57%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVT++CI CK+TDCV VCP+DCF EG NFL I PD CIDC +C PECPV AI    D
Sbjct: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
               L  + ++N+  + Q  W  IT  K  LP   K   V  K    
Sbjct: 61  LPATLAHFEQLNARLSRQPGWKPITQAKPPLPGHEKWKDVADKLPLL 107


>gi|319762492|ref|YP_004126429.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|330825657|ref|YP_004388960.1| ferredoxin, C-terminal protein [Alicycliphilus denitrificans K601]
 gi|317117053|gb|ADU99541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|329311029|gb|AEB85444.1| Ferredoxin, C-terminal protein [Alicycliphilus denitrificans K601]
          Length = 107

 Score =  101 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVVENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCVPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++KIN+E   ++ +IT +K +LP A + +G   K +  
Sbjct: 61  LPSDQLAFIKINAELTPKFKSITKRKAALPDADEWNGTPGKLKDL 105


>gi|17549028|ref|NP_522368.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17431279|emb|CAD17958.1| probable ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 112

 Score =  101 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI    D
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ +    WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|319941592|ref|ZP_08015918.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
 gi|319804962|gb|EFW01804.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
          Length = 110

 Score =  101 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VV E CI CK TDCV+VCPVDCF EG NFL I PDECIDC VC PECP  AI    D
Sbjct: 1   MPHVVCEACIGCKRTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPEAAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E A +WP+IT +K     A +  GV  K +
Sbjct: 61  VPEDQKEFIELNAELAREWPSITHRKPYADDADEWRGVPNKIK 103


>gi|157826297|ref|YP_001494017.1| ferredoxin [Rickettsia akari str. Hartford]
 gi|157800255|gb|ABV75509.1| Ferredoxin [Rickettsia akari str. Hartford]
          Length = 109

 Score =  101 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/107 (56%), Positives = 76/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPESP 60

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
             +E W++   ++     W NIT  K +LP A K    K K+ KY +
Sbjct: 61  ELIE-WVERAKDFIENKGWKNITKNKPALPDADKFKDEKNKFNKYIN 106


>gi|91206087|ref|YP_538442.1| ferredoxin [Rickettsia bellii RML369-C]
 gi|157826613|ref|YP_001495677.1| ferredoxin [Rickettsia bellii OSU 85-389]
 gi|122425218|sp|Q1RH11|FER_RICBR RecName: Full=Ferredoxin
 gi|91069631|gb|ABE05353.1| Ferredoxin [Rickettsia bellii RML369-C]
 gi|157801917|gb|ABV78640.1| Ferredoxin [Rickettsia bellii OSU 85-389]
          Length = 107

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/106 (57%), Positives = 74/106 (69%), Gaps = 3/106 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP+T 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPETP 60

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
             +E W++    +     W  IT KK +LP A K    K K+ KY 
Sbjct: 61  ELIE-WVERAKHFIEHEKWQVITKKKPALPDADKFKDEKDKFNKYI 105


>gi|91983694|gb|ABE68853.1| FdxA [Pseudomonas sp. K94.37]
          Length = 101

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 74/99 (74%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 1   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 60

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  NFIELNAELAEIWPNITEKKDALPDAEEWDGKEGKIADL 99


>gi|332284971|ref|YP_004416882.1| ferredoxin [Pusillimonas sp. T7-7]
 gi|330428924|gb|AEC20258.1| ferredoxin [Pusillimonas sp. T7-7]
          Length = 107

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKFTDCVDVCPVDCFREGANFLVIDPDECIDCAVCVPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++++N+E   ++  I   K+ LP A   +G+  K +  
Sbjct: 61  VPQDQISFIELNAELTPEFGMINRSKKPLPEADDWNGMPDKLKHL 105


>gi|117573306|gb|ABK40829.1| ferredoxin [Pseudomonas sp. C6-23]
 gi|117573308|gb|ABK40830.1| ferredoxin [Pseudomonas sp. C6-2]
          Length = 99

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E    ++ +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPEEMQEF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  IQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 97


>gi|67459707|ref|YP_247331.1| ferredoxin [Rickettsia felis URRWXCal2]
 gi|75535902|sp|Q4UJX3|FER_RICFE RecName: Full=Ferredoxin
 gi|67005240|gb|AAY62166.1| Ferredoxin [Rickettsia felis URRWXCal2]
          Length = 109

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + C+ CK+TDCV+VCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVNDECVKCKYTDCVDVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPESP 60

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
             +E W++   ++     W NIT KK +LP A K    K K+ KY +
Sbjct: 61  ELIE-WVERAKDFIENKGWKNITKKKPALPDADKFKDEKNKFNKYIN 106


>gi|299069168|emb|CBJ40421.1| Ferredoxin 1 [Ralstonia solanacearum CMR15]
          Length = 112

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI    D
Sbjct: 1   MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ +    WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|225677141|ref|ZP_03788140.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590808|gb|EEH12036.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 124

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/123 (50%), Positives = 75/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDC EVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCAEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + +  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  IKDILELDEELLNSEQKIFKSFYNINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|152982564|ref|YP_001353330.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282641|gb|ABR91051.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 114

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/108 (51%), Positives = 69/108 (63%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTE CI CK+TDCV VCP+DCF+EG NFLAI+PDECIDC VC PECPV+AI   TE
Sbjct: 1   MPFVVTEACIQCKYTDCVVVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGATE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
             P  + ++ +N E +    W  I+  KE +P   K   VK K     
Sbjct: 61  VAPEQQHFVALNRELSQHPDWKRISKPKEPMPGHEKWAQVKDKLPLLV 108


>gi|269958328|ref|YP_003328115.1| ferredoxin [Anaplasma centrale str. Israel]
 gi|269848157|gb|ACZ48801.1| ferredoxin [Anaplasma centrale str. Israel]
          Length = 123

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/123 (48%), Positives = 74/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEGEN L I PD+CIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGENMLVIDPDQCIDCGVCVPECPVDAIVSDEF 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + KIN+E++ +W NIT  K  +  A +      K  +YF
Sbjct: 61  IEDIISCDDSTLNERQQSLKAFHKINAEFSKKWKNITASKPPMEEAERYKDDLNK-AQYF 119

Query: 105 SPN 107
             N
Sbjct: 120 KEN 122


>gi|304309916|ref|YP_003809514.1| Ferrodoxin [gamma proteobacterium HdN1]
 gi|301795649|emb|CBL43848.1| Ferrodoxin [gamma proteobacterium HdN1]
          Length = 108

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VV +NCI CK+T C EVCPV+ F+EG NFL I P+ CIDC +C P C   +I    D
Sbjct: 1   MAHVVLDNCINCKYTYCAEVCPVEAFHEGPNFLVIDPEACIDCMLCVPACITGSIMEERD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                   ++ N+  + QWP+I  +K + P A + D V  K 
Sbjct: 61  VPHSQRSMVRANAMLSQQWPSIIERKPAFPDAEEWDKVPGKR 102


>gi|56417282|ref|YP_154356.1| ferredoxin II [Anaplasma marginale str. St. Maries]
 gi|222475646|ref|YP_002564063.1| ferredoxin II (fdxA) [Anaplasma marginale str. Florida]
 gi|254995448|ref|ZP_05277638.1| ferredoxin II (fdxA) [Anaplasma marginale str. Mississippi]
 gi|255003639|ref|ZP_05278603.1| ferredoxin II (fdxA) [Anaplasma marginale str. Puerto Rico]
 gi|255004765|ref|ZP_05279566.1| ferredoxin II (fdxA) [Anaplasma marginale str. Virginia]
 gi|56388514|gb|AAV87101.1| ferredoxin II [Anaplasma marginale str. St. Maries]
 gi|222419784|gb|ACM49807.1| ferredoxin II (fdxA) [Anaplasma marginale str. Florida]
          Length = 123

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/123 (48%), Positives = 74/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEGEN L I PD+CIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGENMLVIDPDQCIDCGVCVPECPVDAIVSDEF 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + KIN+E++ +W NIT  K  +  A +      K  +YF
Sbjct: 61  IEDIISCDDSALNERQQSLKAFHKINAEFSKKWKNITASKPPMEEAERYKDDLNK-AQYF 119

Query: 105 SPN 107
             N
Sbjct: 120 KEN 122


>gi|115379402|ref|ZP_01466505.1| ferredoxin [Stigmatella aurantiaca DW4/3-1]
 gi|310822281|ref|YP_003954639.1| ferrodoxin, 4fe-4S [Stigmatella aurantiaca DW4/3-1]
 gi|115363589|gb|EAU62721.1| ferredoxin [Stigmatella aurantiaca DW4/3-1]
 gi|309395353|gb|ADO72812.1| Ferrodoxin, 4Fe-4S [Stigmatella aurantiaca DW4/3-1]
          Length = 113

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/113 (50%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPV+CFYEG NFL IHPDECIDCG CEP CP  AI P++E
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVNCFYEGANFLVIHPDECIDCGACEPVCPTKAIFPESE 60

Query: 61  --PGLELWLKINSEYAT-QWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                + +  +N + +   WPN+  K   LP A +    K K        PG 
Sbjct: 61  LPDKWKEYKDLNDKLSKGGWPNLAEKLSELPEADEYKDKKDKRA-LLDTAPGK 112


>gi|91983690|gb|ABE68851.1| FdxA [Pseudomonas sp. P12]
          Length = 101

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E
Sbjct: 1   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGME 60

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ +N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  NFIVLNAELAEIWPNITEKKDALPDAEEWDGKEGKIADL 99


>gi|68171341|ref|ZP_00544738.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658543|ref|YP_506870.1| ferredoxin A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999239|gb|EAM85892.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88600000|gb|ABD45469.1| ferredoxin A [Ehrlichia chaffeensis str. Arkansas]
          Length = 125

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ +T+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI PD  
Sbjct: 1   MTHFITDRCIRCKYTDCVEVCPVDCFYEGANMLVIDPDQCIDCGVCVPECPIDAIVPDDF 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + +IN +++ +W NIT+ K     A      K K+  YF
Sbjct: 61  IRDVLECNDSALNEEQKNLKKFYEINKKFSKEWNNITSAKPPYSDAESHKYTKNKF-IYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|117573304|gb|ABK40828.1| ferredoxin [Pseudomonas sp. C6-16]
 gi|117573310|gb|ABK40831.1| ferredoxin [Pseudomonas sp. C6-9]
 gi|117573314|gb|ABK40833.1| ferredoxin [Pseudomonas sp. S7-29]
 gi|117573316|gb|ABK40834.1| ferredoxin [Pseudomonas sp. S7-42]
 gi|117573318|gb|ABK40835.1| ferredoxin [Pseudomonas sp. S7-46]
 gi|117573320|gb|ABK40836.1| ferredoxin [Pseudomonas sp. S7-52]
 gi|117573326|gb|ABK40839.1| ferredoxin [Pseudomonas sp. S8-151]
 gi|117573328|gb|ABK40840.1| ferredoxin [Pseudomonas sp. C6-11]
          Length = 99

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 73/97 (75%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  IELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 97


>gi|117573312|gb|ABK40832.1| ferredoxin [Pseudomonas sp. P97.39]
 gi|117573330|gb|ABK40841.1| ferredoxin [Pseudomonas sp. F96.26]
 gi|117573336|gb|ABK40844.1| ferredoxin [Pseudomonas sp. P97.1]
 gi|117573338|gb|ABK40845.1| ferredoxin [Pseudomonas sp. P97.27]
          Length = 99

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGQENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  IELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 97


>gi|134095508|ref|YP_001100583.1| ferredoxin [Herminiimonas arsenicoxydans]
 gi|133739411|emb|CAL62461.1| Ferredoxin 1 [Herminiimonas arsenicoxydans]
          Length = 116

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 65/115 (56%), Gaps = 5/115 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV VCP+DCF EG NFL I+PDECIDC +C  ECPV AI  D E
Sbjct: 1   MTFVVTEPCIQCKYTDCVTVCPMDCFMEGPNFLVINPDECIDCSMCVAECPVGAIVGDRE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  +L++N   +    W  IT  K +LP   K      K       +P  +
Sbjct: 61  LAADQAHFLELNRSLSAHPDWQRITMSKPALPEHEKWARTTTKLSLLL-ESPEKE 114


>gi|32470342|ref|NP_863589.1| ferredoxin [Acidithiobacillus ferrooxidans]
 gi|1657802|gb|AAC80173.1| ferredoxin [Acidithiobacillus ferrooxidans]
          Length = 122

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT+VVTE CI CK+TDCV VCPVDCF+EG NFLAI PDECIDC +C PECPVDAI  D  
Sbjct: 1  MTHVVTEACIRCKYTDCVTVCPVDCFHEGPNFLAIDPDECIDCTLCVPECPVDAIFRDVD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
              +E + ++N+  A +WP I  KK +LP A +  
Sbjct: 61 LPDAVEKYPELNARLARRWPVIIQKKPALPDAEQWR 96


>gi|309782798|ref|ZP_07677519.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
 gi|308918576|gb|EFP64252.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
          Length = 112

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI P  +
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICVPECPVGAIYPAAE 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N++ +    WP +T  +  L   A    VK K +   
Sbjct: 61  VPADQQDFIALNAQLSRRADWPRLTKVQAPLQDHAHWAQVKDKRDALV 108


>gi|134094844|ref|YP_001099919.1| ferredoxin [Herminiimonas arsenicoxydans]
 gi|133738747|emb|CAL61794.1| Ferredoxin 1 [Herminiimonas arsenicoxydans]
          Length = 109

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/108 (50%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTE+CI CK+TDCV VCP+DCF+EG NFLAI+PDECIDC VC PECPV+AI    E
Sbjct: 1   MPFVVTESCIQCKYTDCVAVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGAAE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
             P  + ++++N   +    W  I  +KE LP  AK   +K K     
Sbjct: 61  ISPEQQHFVELNRTLSRHPDWKRIRQQKEPLPEHAKWAELKDKLPLLL 108


>gi|192359344|ref|YP_001982818.1| 7-Fe ferredoxin [Cellvibrio japonicus Ueda107]
 gi|190685509|gb|ACE83187.1| 7-Fe ferredoxin [Cellvibrio japonicus Ueda107]
          Length = 107

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECPV AI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPVSAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 ++L++N+E +  WPNIT  K++   AA  DGV  K +  
Sbjct: 61  LPEDQAVFLELNAELSQVWPNITEIKDAPADAADWDGVPGKLQHL 105


>gi|117573340|gb|ABK40846.1| ferredoxin [Pseudomonas sp. Q86-87]
          Length = 99

 Score = 99.3 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  IELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 97


>gi|91983696|gb|ABE68854.1| FdxA [Pseudomonas sp. K93.2]
 gi|117573334|gb|ABK40843.1| ferredoxin [Pseudomonas sp. K94.38]
          Length = 99

 Score = 99.3 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  IELNAELAEIWPNITEKKDALPDAEEWDGKEGKIADL 97


>gi|117573292|gb|ABK40822.1| ferredoxin [Pseudomonas sp. C10-186]
 gi|117573294|gb|ABK40823.1| ferredoxin [Pseudomonas sp. C10-189]
 gi|117573296|gb|ABK40824.1| ferredoxin [Pseudomonas sp. C10-190]
 gi|117573302|gb|ABK40827.1| ferredoxin [Pseudomonas sp. C10-205]
          Length = 99

 Score = 99.3 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPTGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  IELNAELADIWPNITEKKDALPDAEEWDGKTGKIADL 97


>gi|254796711|ref|YP_003081547.1| ferredoxin [Neorickettsia risticii str. Illinois]
 gi|254589951|gb|ACT69313.1| ferredoxin [Neorickettsia risticii str. Illinois]
          Length = 139

 Score = 99.3 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 66/135 (48%), Gaps = 24/135 (17%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTE C+ CK+TDCVEVCPVDCF+E   +L I PD CIDCGVC PECP++AI  D  
Sbjct: 1   MPHVVTEKCLKCKYTDCVEVCPVDCFHEAGEYLVIDPDVCIDCGVCVPECPIEAIINDET 60

Query: 61  PGLELWLK-----------------------INSEYATQWPNITTKKESLPSAAKMDGVK 97
                 L+                        N E A + P I  KK+ L  A K   V 
Sbjct: 61  YIDGKSLEEIISVSDTSLLTKKQLDARFMVVFNRERAAELPLIVMKKDPLDGAEKWAEVP 120

Query: 98  QKYEKYFSPNPGGKN 112
            K  +Y       +N
Sbjct: 121 NKI-RYIKQTESKEN 134


>gi|15604660|ref|NP_221178.1| ferredoxin (fdxA) [Rickettsia prowazekii str. Madrid E]
 gi|6647508|sp|Q9ZCC8|FER_RICPR RecName: Full=Ferredoxin
 gi|3861355|emb|CAA15254.1| FERREDOXIN (fdxA) [Rickettsia prowazekii]
 gi|292572488|gb|ADE30403.1| Ferredoxin [Rickettsia prowazekii Rp22]
          Length = 109

 Score = 99.3 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/109 (55%), Positives = 76/109 (69%), Gaps = 3/109 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPESP 60

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             +E W++   ++     W NIT KK +LP A K    K K+ KY    
Sbjct: 61  ELIE-WVERAKDFIENHGWKNITKKKCALPGADKFKDEKDKFNKYIIKK 108


>gi|51473997|ref|YP_067754.1| ferredoxin [Rickettsia typhi str. Wilmington]
 gi|81692331|sp|Q68Y04|FER_RICTY RecName: Full=Ferredoxin
 gi|51460309|gb|AAU04272.1| ferredoxin [Rickettsia typhi str. Wilmington]
          Length = 110

 Score = 98.9 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 76/106 (71%), Gaps = 3/106 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYIVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPESP 60

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
             +E W++   ++     W NIT KK +LP A K    + K+ KY 
Sbjct: 61  ELIE-WVERAKDFIENQGWKNITKKKCALPDADKFKDEQDKFNKYI 105


>gi|268317837|ref|YP_003291556.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodothermus marinus DSM 4252]
 gi|262335371|gb|ACY49168.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodothermus
           marinus DSM 4252]
          Length = 118

 Score = 98.9 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 65/103 (63%), Gaps = 6/103 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPVD FYEG NFLAIHPDECIDC  C P CP +AI PD E
Sbjct: 1   MPYVVCEPCINCKYTDCVEVCPVDAFYEGPNFLAIHPDECIDCNACVPVCPTEAIYPDDE 60

Query: 61  --PGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVK 97
                + +++ N   A QW     NIT KKE LP A +     
Sbjct: 61  VPEEWQHYIEWNRYLAEQWKAQGFNITQKKEPLPEAEEWRNRP 103


>gi|229587193|ref|YP_002845694.1| Ferredoxin [Rickettsia africae ESF-5]
 gi|228022243|gb|ACP53951.1| Ferredoxin [Rickettsia africae ESF-5]
          Length = 116

 Score = 98.9 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 7/110 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEG    +  L I+P ECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPAECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P++   +E W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 61  PESPGLIE-WVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYI 109


>gi|157829118|ref|YP_001495360.1| ferredoxin [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933842|ref|YP_001650631.1| ferredoxin [Rickettsia rickettsii str. Iowa]
 gi|157801599|gb|ABV76852.1| ferredoxin [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908929|gb|ABY73225.1| ferredoxin [Rickettsia rickettsii str. Iowa]
          Length = 116

 Score = 98.5 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEG    +  L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P++   +E W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 61  PESPGLIE-WVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYI 109


>gi|117573332|gb|ABK40842.1| ferredoxin [Pseudomonas sp. K93.52]
          Length = 99

 Score = 98.5 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK+ +P A + DG   K    
Sbjct: 61  IELNAELADVWPNITEKKDPMPGAEEWDGKTGKIADL 97


>gi|157964977|ref|YP_001499801.1| ferredoxin [Rickettsia massiliae MTU5]
 gi|157844753|gb|ABV85254.1| Ferredoxin [Rickettsia massiliae MTU5]
          Length = 116

 Score = 98.1 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEG    +  L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P++   +E W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 61  PESPGLIE-WVERAKDFIENKGWKNITKKKPALPDADKFKDEKDKFNKYI 109


>gi|49080100|gb|AAT49971.1| PA2715 [synthetic construct]
          Length = 113

 Score = 98.1 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI+ + E
Sbjct: 1   MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              G   ++ +N E A    W  IT KK +        G+  K  + 
Sbjct: 61  VPLGQRQFIALNGELAAHPNWTQITRKKPAPDDHDAWFGLPGKLAEL 107


>gi|157804217|ref|YP_001492766.1| ferredoxin [Rickettsia canadensis str. McKiel]
 gi|157785480|gb|ABV73981.1| Ferredoxin [Rickettsia canadensis str. McKiel]
          Length = 114

 Score = 98.1 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 3/105 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGELMLVINPDECIDCGVCIPDCPIDAIKPESP 60

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
             +E W++   ++     W NIT K+ +L  A K    K K+ KY
Sbjct: 61  ELIE-WVERAKDFIENKGWKNITKKRPALTDADKFKDEKDKFNKY 104


>gi|15893206|ref|NP_360920.1| ferredoxin [Rickettsia conorii str. Malish 7]
 gi|81774396|sp|Q92G41|FER_RICCN RecName: Full=Ferredoxin
 gi|15620421|gb|AAL03821.1| ferredoxin [Rickettsia conorii str. Malish 7]
          Length = 116

 Score = 98.1 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEG    +  L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P++   +E W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 61  PESPGLIE-WVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYI 109


>gi|113866665|ref|YP_725154.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525441|emb|CAJ91786.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 109

 Score = 98.1 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI    D
Sbjct: 1   MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKY 100
                  ++ +N+E +    W  +   K  +P   +  G   + 
Sbjct: 61  LPEDQRHFIALNAELSRRADWLPLLKAKGPIPGHEQWAGHPDRL 104


>gi|73666649|ref|YP_302665.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ehrlichia canis str. Jake]
 gi|72393790|gb|AAZ68067.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Ehrlichia canis str.
           Jake]
          Length = 125

 Score = 98.1 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/123 (47%), Positives = 75/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI PD  
Sbjct: 1   MTHFVTDKCIRCKYTDCVEVCPVDCFYEGANMLVIDPDQCIDCGVCIPECPIDAIVPDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  ++   +IN +++ +W NIT+ K + P A      K K+ KYF
Sbjct: 61  IKDILECSDSELNEEQKNIKKSYEINKKFSKEWKNITSAKTAYPEAESYKYRKDKF-KYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|15597911|ref|NP_251405.1| ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|107102238|ref|ZP_01366156.1| hypothetical protein PaerPA_01003290 [Pseudomonas aeruginosa PACS2]
 gi|116050700|ref|YP_790480.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891124|ref|YP_002439990.1| putative ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|254235694|ref|ZP_04929017.1| hypothetical protein PACG_01630 [Pseudomonas aeruginosa C3719]
 gi|254241140|ref|ZP_04934462.1| hypothetical protein PA2G_01829 [Pseudomonas aeruginosa 2192]
 gi|296388818|ref|ZP_06878293.1| putative ferredoxin [Pseudomonas aeruginosa PAb1]
 gi|313107772|ref|ZP_07793951.1| putative ferredoxin [Pseudomonas aeruginosa 39016]
 gi|9948790|gb|AAG06103.1|AE004699_8 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|115585921|gb|ABJ11936.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167625|gb|EAZ53136.1| hypothetical protein PACG_01630 [Pseudomonas aeruginosa C3719]
 gi|126194518|gb|EAZ58581.1| hypothetical protein PA2G_01829 [Pseudomonas aeruginosa 2192]
 gi|218771349|emb|CAW27116.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|310880453|gb|EFQ39047.1| putative ferredoxin [Pseudomonas aeruginosa 39016]
          Length = 112

 Score = 97.7 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI+ + E
Sbjct: 1   MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              G   ++ +N E A    W  IT KK +        G+  K  + 
Sbjct: 61  VPLGQRQFIALNGELAAHPNWTQITRKKPAPDDHDAWFGLPGKLAEL 107


>gi|88606918|ref|YP_504664.1| ferredoxin [Anaplasma phagocytophilum HZ]
 gi|88597981|gb|ABD43451.1| ferredoxin [Anaplasma phagocytophilum HZ]
          Length = 126

 Score = 97.7 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---- 56
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP DAI     
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGNNMLVIDPDQCIDCGVCVPECPADAIVSDEF 60

Query: 57  ------------PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                        D +  L+ + KIN +++ +W NIT+ +  L  A     +  KY+ +F
Sbjct: 61  IEDVLASDDSALNDEQKMLKTFYKINEDFSKKWKNITSAQPHLEDADTYKSMAGKYQ-FF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|89901238|ref|YP_523709.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89345975|gb|ABD70178.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 109

 Score = 97.7 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 65/105 (61%), Gaps = 4/105 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+ VTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHTVTEACIKCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYAT--QWPNITTKKESLPSAAKMDGVKQKYE 101
                +   KIN+E A    W  IT +K +LP A +      K  
Sbjct: 61  VPKDQQHMTKINAELAKLPGWKTITKRKPALPEAEEWKDKTGKLP 105


>gi|117573298|gb|ABK40825.1| ferredoxin [Pseudomonas sp. C10-197]
 gi|117573300|gb|ABK40826.1| ferredoxin [Pseudomonas sp. C10-204]
 gi|117573322|gb|ABK40837.1| ferredoxin [Pseudomonas sp. S8-110]
 gi|117573324|gb|ABK40838.1| ferredoxin [Pseudomonas sp. S8-130]
          Length = 99

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           + +N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  IVLNAELADIWPNITEKKDALPDAEEWDGKEGKIADL 97


>gi|170726752|ref|YP_001760778.1| molydopterin dinucleotide-binding region [Shewanella woodyi ATCC
           51908]
 gi|169812099|gb|ACA86683.1| molydopterin dinucleotide-binding region [Shewanella woodyi ATCC
           51908]
          Length = 1299

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 53/101 (52%), Gaps = 4/101 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           M YVVT  CI  KHT CV+VCPV+ F EGE  L I PDECI C  C  ECP  AI P+  
Sbjct: 1   MAYVVTGACIGDKHTSCVDVCPVNAFREGEEMLYIDPDECISCNACLTECPSLAIFPEAS 60

Query: 59  TEPGLELWLKINSEYATQWPNITTK--KESLPSAAKMDGVK 97
                  ++ IN+  + + P IT +  K+ +         K
Sbjct: 61  VPEDQLQYININAIESKKHPVITERINKQPVKETDVFQSNK 101


>gi|268318191|ref|YP_003291910.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodothermus marinus DSM 4252]
 gi|21389190|gb|AAM50525.1|AF515798_1 ferredoxin [Rhodothermus marinus]
 gi|262335725|gb|ACY49522.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodothermus
           marinus DSM 4252]
          Length = 118

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 66/103 (64%), Gaps = 6/103 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPVDCFYEG NFLAIHPDECIDC  C P CPV+AI PD E
Sbjct: 1   MPYVVCEPCINCKYTDCVEVCPVDCFYEGPNFLAIHPDECIDCNACVPTCPVEAIYPDDE 60

Query: 61  --PGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVK 97
                + +++ N   A QW     NIT KK  LP A +     
Sbjct: 61  VPEEWQHYIEWNRYLAEQWKAMGYNITEKKGPLPDAEEWRNRP 103


>gi|226939570|ref|YP_002794643.1| 4Fe-4S ferredoxin, iron-sulfur binding [Laribacter hongkongensis
           HLHK9]
 gi|226714496|gb|ACO73634.1| 4Fe-4S ferredoxin, iron-sulfur binding [Laribacter hongkongensis
           HLHK9]
          Length = 112

 Score = 97.0 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/107 (48%), Positives = 63/107 (58%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCVEVCPVDCF EG NFL I P ECIDC +C  ECPV AI    D
Sbjct: 1   MTHVVTEACIRCKYTDCVEVCPVDCFREGPNFLVIDPRECIDCVLCVAECPVGAIYADDD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
             P  + ++ +N+E A    W  IT  +     A     V  K ++ 
Sbjct: 61  VPPDQQDFIALNAELAAHPEWRPITMARLPPDDADDWARVLDKRQEL 107


>gi|152987732|ref|YP_001349347.1| putative ferredoxin [Pseudomonas aeruginosa PA7]
 gi|150962890|gb|ABR84915.1| probable ferredoxin [Pseudomonas aeruginosa PA7]
          Length = 112

 Score = 97.0 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHP+ECIDC +CEPECPV AI+ + E
Sbjct: 1   MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPEECIDCALCEPECPVAAIRAEDE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              G   ++ +N E A    W  IT KK +        G+  K  + 
Sbjct: 61  VPLGQRQFIGLNGELAAHPNWTRITRKKPAPDDHDAWFGMPGKLAEL 107


>gi|88608216|ref|YP_506219.1| ferredoxin [Neorickettsia sennetsu str. Miyayama]
 gi|88600385|gb|ABD45853.1| ferredoxin [Neorickettsia sennetsu str. Miyayama]
          Length = 139

 Score = 96.6 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 65/135 (48%), Gaps = 24/135 (17%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTE C+ CK+TDCVEVCPVDCF+E   +L I PD CIDCGVC PECP++AI  D  
Sbjct: 1   MPHVVTEKCVKCKYTDCVEVCPVDCFHEAGEYLVIDPDVCIDCGVCVPECPIEAIISDET 60

Query: 61  PGLEL-----------------------WLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
                                        L  N E A + P I TKK+ L  A K   V 
Sbjct: 61  YIDGKSLGEIISVSDASLLTKKQLDARFMLVFNRERAAELPLIVTKKDPLDGAEKWAEVP 120

Query: 98  QKYEKYFSPNPGGKN 112
            K   Y       +N
Sbjct: 121 NKIC-YIKQTESKEN 134


>gi|73540321|ref|YP_294841.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72117734|gb|AAZ59997.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 109

 Score = 96.2 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI    D
Sbjct: 1   MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                  ++ IN+E A +  W  +   K  L   A       +      
Sbjct: 61  LPEDQRHFVAINAELARRPDWLPLRKAKGPLSDHADWADHPDRLSLLIR 109


>gi|83815572|ref|YP_444389.1| ferredoxin [Salinibacter ruber DSM 13855]
 gi|83756966|gb|ABC45079.1| ferredoxin [Salinibacter ruber DSM 13855]
          Length = 148

 Score = 95.8 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 62/103 (60%), Gaps = 6/103 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVV E CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI P+  
Sbjct: 35  MPYVVAEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPEDQ 94

Query: 60  -EPGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVK 97
                E + + N   A QW     N+T K   L  A   +  +
Sbjct: 95  LPEEWEHYTQWNEYLANQWRDLGYNVTEKTGPLDDAEAWEDAE 137


>gi|86750526|ref|YP_487022.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris HaA2]
 gi|86573554|gb|ABD08111.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris HaA2]
          Length = 101

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYVVT+NC  C++T+CV VCPV+CF+       I P+ CIDCG C P CPV AI PD  
Sbjct: 1  MTYVVTDNCKGCRYTECVTVCPVECFHVDAAMTYIDPENCIDCGGCAPACPVGAIAPDYR 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
               + W+ +N + A + P +T +   LP A  
Sbjct: 61 LPAHQKFWIDVNRKRAAETPVLTARLPPLPGADD 94


>gi|300692275|ref|YP_003753270.1| ferredoxin II (FdII) [Ralstonia solanacearum PSI07]
 gi|299079335|emb|CBJ52007.1| Ferredoxin II (FdII) [Ralstonia solanacearum PSI07]
          Length = 103

 Score = 94.3 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/100 (48%), Positives = 56/100 (56%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVT+ C  C++T+CV VCPV CF+  +    I PD CIDCG C P CPV AI  D  
Sbjct: 1   MTYVVTDLCTGCRYTECVTVCPVACFHLDDQMTYIDPDNCIDCGGCAPACPVGAIVADYL 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                  WL IN E A Q P IT+K   LP A  +   K 
Sbjct: 61  LPADKAAWLGINRERAAQTPVITSKLPPLPGAPDLPEHKD 100


>gi|114769350|ref|ZP_01446976.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
 gi|114550267|gb|EAU53148.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
          Length = 81

 Score = 93.9 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 54/80 (67%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L IHPDECIDCGVCEPECP DAI PDTEP  E W++ N +Y+  WP I ++K  LP A 
Sbjct: 1   MLVIHPDECIDCGVCEPECPADAILPDTEPDTEKWVEFNRKYSEIWPVIISQKTPLPDAE 60

Query: 92  KMDGVKQKYEKYFSPNPGGK 111
             DG + K EKYFS  PG  
Sbjct: 61  VRDGEEGKLEKYFSEKPGEG 80


>gi|326331682|ref|ZP_08197970.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
 gi|325950481|gb|EGD42533.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
          Length = 536

 Score = 93.5 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 12/109 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           MTYV+T++C  C    CVEVCPVDC + G +         L IHPDECIDCG CE  CPV
Sbjct: 1   MTYVITQSC--CNDASCVEVCPVDCIHPGPDEPGFGAAEMLYIHPDECIDCGACEDACPV 58

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           +AI PD E       ++ IN+ +              P  AK+ G   K
Sbjct: 59  NAIFPDYEVPDAFAPYVDINAAFFEFTGEQDEPAPLPPPGAKIPGGPLK 107


>gi|294506132|ref|YP_003570190.1| Ferredoxin [Salinibacter ruber M8]
 gi|294342460|emb|CBH23238.1| Ferredoxin [Salinibacter ruber M8]
          Length = 141

 Score = 93.5 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 62/103 (60%), Gaps = 6/103 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVV E CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI P+  
Sbjct: 28  MPYVVAEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPEDQ 87

Query: 60  -EPGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVK 97
                E + + N   A QW     N+T K   L  A   +  +
Sbjct: 88  LPEEWEHYTQWNEYLANQWRDLGYNVTEKTGPLDDAEAWEDAE 130


>gi|167816449|ref|ZP_02448129.1| putative ferredoxin [Burkholderia pseudomallei 91]
 gi|167894938|ref|ZP_02482340.1| putative ferredoxin [Burkholderia pseudomallei 7894]
          Length = 107

 Score = 93.5 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/101 (50%), Positives = 63/101 (62%), Gaps = 4/101 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLE 64
           E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   +      
Sbjct: 2   EGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQR 61

Query: 65  LWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 62  HFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|222102890|ref|YP_002539929.1| ferredoxin [Agrobacterium vitis S4]
 gi|221739491|gb|ACM40224.1| ferredoxin [Agrobacterium vitis S4]
          Length = 101

 Score = 93.1 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MTYVVT+ C  C++T+CV VCPV+CF+  E    I PD CIDCG C P CPV AI     
Sbjct: 1  MTYVVTDQCSGCRYTECVTVCPVECFHIDEEMTYIDPDNCIDCGGCAPVCPVGAIHASYL 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
               + W++IN   A + P + ++   LP A +
Sbjct: 61 LPADKQEWIEINRRRAAETPVVASRLPPLPGAEE 94


>gi|167720232|ref|ZP_02403468.1| ferredoxin [Burkholderia pseudomallei DM98]
 gi|167846357|ref|ZP_02471865.1| ferredoxin [Burkholderia pseudomallei B7210]
 gi|167903326|ref|ZP_02490531.1| ferredoxin [Burkholderia pseudomallei NCTC 13177]
          Length = 107

 Score = 93.1 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 64/101 (63%), Gaps = 4/101 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLE 64
           E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   +      
Sbjct: 2   EGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQR 61

Query: 65  LWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 62  HFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|255021029|ref|ZP_05293082.1| ferredoxin, 4Fe-4S [Acidithiobacillus caldus ATCC 51756]
 gi|254969443|gb|EET26952.1| ferredoxin, 4Fe-4S [Acidithiobacillus caldus ATCC 51756]
          Length = 107

 Score = 93.1 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +CEPECP +AI  D  
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCEPECPAEAIFRDDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E +L+IN+  A  WP I  KK +   A     VK K 
Sbjct: 61  LPEGQEEFLEINARLAKTWPPIIQKKAAPADADDWAKVKDKR 102


>gi|52857656|gb|AAU89081.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score = 92.7 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/80 (80%), Positives = 68/80 (85%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNI 80
            LE WL +N+EYA  WP I
Sbjct: 61 QNLEKWLGVNAEYAKTWPTI 80


>gi|167744446|ref|ZP_02417220.1| putative ferredoxin [Burkholderia pseudomallei 14]
          Length = 107

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 64/101 (63%), Gaps = 4/101 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLE 64
           E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   +      
Sbjct: 2   EGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQR 61

Query: 65  LWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 62  PFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|269961009|ref|ZP_06175378.1| Ferredoxin [Vibrio harveyi 1DA3]
 gi|269834228|gb|EEZ88318.1| Ferredoxin [Vibrio harveyi 1DA3]
          Length = 104

 Score = 91.6 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 2/88 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1  MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61 PGLEL--WLKINSEYATQWPNITTKKES 86
             +   + ++N+E A  WP  T  K +
Sbjct: 61 LPEDQVIYKELNAELAEIWPVQTEVKPA 88


>gi|111017434|ref|YP_700406.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110816964|gb|ABG92248.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 542

 Score = 90.0 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 15/111 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
           M YVVT+NC  C    CV VCPVDC +        +    L I P  CIDCG C   CPV
Sbjct: 1   MAYVVTQNC--CNDATCVAVCPVDCIHPTPAEREYQRTEMLYIDPGACIDCGACADVCPV 58

Query: 53  DAIKPDTEPGL--ELWLKINSEYATQWPNITTKK---ESLPSAAKMDGVKQ 98
           DAI P   P    + + +IN+EY  + P         + LP A     V  
Sbjct: 59  DAIVPGDAPAPDIDRYREINAEYFQRNPRSIAPGAHVQPLPLALATADVAD 109


>gi|262197809|ref|YP_003269018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262081156|gb|ACY17125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 131

 Score = 90.0 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/126 (41%), Positives = 63/126 (50%), Gaps = 23/126 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M Y+V + C+ CK+TDCV VCPVDCFYEG+NFL IHPDECIDCG CEPECP  AI    D
Sbjct: 1   MPYIVADPCVKCKYTDCVAVCPVDCFYEGKNFLVIHPDECIDCGACEPECPTTAIFEEGD 60

Query: 59  TEPGLELWLKINSEYA---------------------TQWPNITTKKESLPSAAKMDGVK 97
                  +  IN+ ++                       WPNIT +   L  A      +
Sbjct: 61  LPEKWNAYKTINAVFSGAEEMGDVDTEGWPEQLKASAQVWPNITEQGSPLDGADDAKDEE 120

Query: 98  QKYEKY 103
            K    
Sbjct: 121 NKIAAL 126


>gi|149916919|ref|ZP_01905420.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
 gi|149822197|gb|EDM81588.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
          Length = 102

 Score = 90.0 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT NC  C+ TDCV VCPV+CF+  +  L I PDECIDCG C PECPV+AI  +TE
Sbjct: 1  MTFVVTSNCQRCRFTDCVAVCPVECFHGDKEMLYIDPDECIDCGACVPECPVEAIYDETE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
            P    W++IN+  A++ P +   +  LP+A +
Sbjct: 61 VPPEQIEWIEINAARASELPVVAETETPLPTAEE 94


>gi|91983688|gb|ABE68850.1| FdxA [Pseudomonas sp. Q37-87]
          Length = 92

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 2/90 (2%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEY 73
           DCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E ++++N+E 
Sbjct: 1   DCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENFIELNAEL 60

Query: 74  ATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           A  WPNIT KK++LP A + DG   K    
Sbjct: 61  ADIWPNITEKKDALPDAEEWDGKTGKIADL 90


>gi|254428704|ref|ZP_05042411.1| 4Fe-4S binding domain protein [Alcanivorax sp. DG881]
 gi|196194873|gb|EDX89832.1| 4Fe-4S binding domain protein [Alcanivorax sp. DG881]
          Length = 90

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
           +EVCPVDCFYEGENFL IHPDECIDC +CEPECPV+AI  + E     + +L+IN++ A 
Sbjct: 1   MEVCPVDCFYEGENFLVIHPDECIDCALCEPECPVNAIFSEDELPDDQQDFLEINADLAE 60

Query: 76  QWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           +WPNIT  K++   A + DGV  K EK   
Sbjct: 61  KWPNITEMKDAPDDAEEWDGVPNKREKLVR 90


>gi|126436658|ref|YP_001072349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|126236458|gb|ABN99858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 548

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+NC  CK   CV VCPVDC           G   L I P+ CIDCG C  ECPV
Sbjct: 1  MAYVITQNC--CKDASCVPVCPVDCIRPAGEAGQFVGTEMLYIDPETCIDCGACLEECPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWP 78
          DAI  D       E + +IN+ Y  + P
Sbjct: 59 DAIYYDEDLPADQERFREINASYFQRHP 86


>gi|328887086|emb|CCA60325.1| Ferredoxin [Streptomyces venezuelae ATCC 10712]
          Length = 97

 Score = 88.5 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 2/88 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVT+ CI CK+TDCV+VCPV CF+EG   L I+P+ECIDC  C  ECP +AI  D +
Sbjct: 1  MAYVVTDECIGCKYTDCVDVCPVSCFHEGPEMLYINPEECIDCNACVAECPPEAIWADVD 60

Query: 61 PGLEL--WLKINSEYATQWPNITTKKES 86
             +   W++IN E + ++P +   +  
Sbjct: 61 LPEDKLQWIEINGEMSAKYPVLHESRGP 88


>gi|226361209|ref|YP_002778987.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239694|dbj|BAH50042.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 541

 Score = 88.5 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 51/111 (45%), Gaps = 15/111 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
           M YVVT+NC  C    CV VCPVDC +        +    L I P  CIDCG C   CPV
Sbjct: 1   MAYVVTQNC--CNDATCVAVCPVDCIHPTPAEREYKRTEMLYIDPGACIDCGACSDVCPV 58

Query: 53  DAIKPDTEPGL--ELWLKINSEYATQWPNITTKK---ESLPSAAKMDGVKQ 98
           DAI P   P    + +  IN+EY  + P         + LP A    GV  
Sbjct: 59  DAIVPGDAPVPDIDRYRDINAEYFQRNPRSAAPGAHVQPLPIALATAGVDD 109


>gi|52857660|gb|AAU89083.1| ferredoxin [uncultured Afipia sp.]
          Length = 81

 Score = 88.1 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/79 (78%), Positives = 67/79 (84%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPN 79
            LE WL +++EYA  WP 
Sbjct: 61 QNLEKWLGVSAEYAKTWPT 79


>gi|226304296|ref|YP_002764254.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226183411|dbj|BAH31515.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 563

 Score = 88.1 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTYVVT+ C  C    CV VCPV+C +   +         L I P+ CIDCG C   CP+
Sbjct: 1  MTYVVTQPC--CNDASCVAVCPVNCIHPTPDESDYARTEMLYIDPNTCIDCGACADACPI 58

Query: 53 DAIKPDT--EPGLELWLKINSEYAT 75
          DAI PD+  + G   +L+IN++Y  
Sbjct: 59 DAIVPDSDLDEGDMPYLEINADYFE 83


>gi|52857658|gb|AAU89082.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score = 88.1 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/80 (77%), Positives = 67/80 (83%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNI 80
            LE WL +N+EYA   P +
Sbjct: 61 QNLEKWLGVNAEYAKTXPKL 80


>gi|52857664|gb|AAU89085.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score = 87.7 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/78 (79%), Positives = 67/78 (85%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWP 78
            LE WL +++EYA  WP
Sbjct: 61 QNLEKWLGVSAEYAKTWP 78


>gi|52857666|gb|AAU89086.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score = 87.7 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/80 (77%), Positives = 66/80 (82%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNI 80
            LE WL +N+EYA     I
Sbjct: 61 QNLEKWLGVNAEYAKTXXTI 80


>gi|52857662|gb|AAU89084.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 62/79 (78%), Positives = 66/79 (83%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPN 79
            LE WL +N+EYA   P 
Sbjct: 61 QNLEKWLGVNAEYAKTGPT 79


>gi|163839921|ref|YP_001624327.1| N-succinyldiaminopimelate aminotransferase [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953397|gb|ABY22912.1| ferredoxin [Renibacterium salmoninarum ATCC 33209]
          Length = 539

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 42  TYVIAQPCVDIKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDDV 101

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                 + K N E+  +         S   AAK+ G       Y S  P  
Sbjct: 102 PEEWADYYKANVEFFNE-------IGSPGGAAKV-GSTGTDHPYISALPPQ 144


>gi|307069599|ref|YP_003878076.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
          [Candidatus Zinderia insecticola CARI]
 gi|306482859|gb|ADM89730.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
          [Candidatus Zinderia insecticola CARI]
          Length = 110

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT++VTE+CI CK+TDCVEVCPV+CF+EG NFL I+P+ECIDCGVC  ECP  AI    D
Sbjct: 1  MTHIVTESCIECKYTDCVEVCPVNCFHEGPNFLVINPEECIDCGVCVSECPAKAIYLEED 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
               + + KIN E + +WP I   K     A
Sbjct: 61 LPKNQKQFSKINLELSKKWPIINNSKPHKKDA 92


>gi|226361233|ref|YP_002779011.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239718|dbj|BAH50066.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 561

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV VCPVDC +   N         L I P  CIDCG C   CPV
Sbjct: 1  MAHVVTQSC--CNDASCVAVCPVDCIHPTPNEPGYGRAEMLYIDPVGCIDCGACIDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAA 91
          DAI PD +  P    + +IN+ Y      +    E   +A 
Sbjct: 59 DAILPDYDLTPETARYEEINAAYYLNREPLAPAVEPPGAAE 99


>gi|91774917|ref|YP_544673.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus
          flagellatus KT]
 gi|91708904|gb|ABE48832.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
          flagellatus KT]
          Length = 101

 Score = 86.2 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MT VVT+NC+ C+ T+CV  CPV  F  G   L I  + CIDCG C P+CPV AI    D
Sbjct: 1  MTTVVTDNCLKCRFTECVTSCPVSAFRAGPEMLYIDSETCIDCGACVPKCPVQAIYEDLD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
              +  W+ IN+  A  WP IT K   L  A
Sbjct: 61 LPEDMLQWIDINASEAKLWPKITAKDVPLEGA 92


>gi|254456143|ref|ZP_05069572.1| ferredoxin [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083145|gb|EDZ60571.1| ferredoxin [Candidatus Pelagibacter sp. HTCC7211]
          Length = 77

 Score = 85.8 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 53/76 (69%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L I PDECIDCGVCEPECPVDAI  DTEPG E WL+IN++Y+  WPNI+ KK+      
Sbjct: 1   MLVIKPDECIDCGVCEPECPVDAITADTEPGSEKWLEINTKYSEIWPNISEKKDPPTDHE 60

Query: 92  KMDGVKQKYEKYFSPN 107
           K    + KYEKYF  N
Sbjct: 61  KFKDEQNKYEKYFKEN 76


>gi|330813498|ref|YP_004357737.1| ferredoxin [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486593|gb|AEA80998.1| ferredoxin [Candidatus Pelagibacter sp. IMCC9063]
          Length = 83

 Score = 85.0 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L I+PDECIDCGVCEPECP+ AI+PDT  G E  + +N + +  WP IT KK+ LP   
Sbjct: 1   MLVINPDECIDCGVCEPECPIGAIEPDTNDGAEKLVLLNKKLSETWPVITKKKDPLPDWE 60

Query: 92  KMDGVKQKYEKYFSPNPGGKN 112
           K   ++ K +KY+S   G  +
Sbjct: 61  KFKDMENKLDKYYSEKAGPGD 81


>gi|296122862|ref|YP_003630640.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
 gi|296015202|gb|ADG68441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
          Length = 94

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT+VV E C  CK+TDCV VCPV+CF EGE+ L IHP+ECIDC  C PECP  AI  +  
Sbjct: 1  MTHVVAEPCFNCKYTDCVVVCPVECFKEGESMLFIHPEECIDCEACVPECPPQAIFHEDN 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLP 88
                 +LK+N+E + Q P IT KKE L 
Sbjct: 61 LPAQWADYLKLNAEMSEQCPPITEKKEPLG 90


>gi|226364584|ref|YP_002782366.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226243073|dbj|BAH53421.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 559

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C +   +         L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEKPFATTEMLYIDPDTCIDCGACVEECPV 58

Query: 53 DAIK--PDTEPGLELWLKINSEYATQWPNITTKKESL 87
          +AI    D +   E +L IN++Y T+ P      E L
Sbjct: 59 EAIYAENDLDEVDEPYLDINAQYYTKHPIGPDWPEPL 95


>gi|111022079|ref|YP_705051.1| ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus jostii
          RHA1]
 gi|110821609|gb|ABG96893.1| possible ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus
          jostii RHA1]
          Length = 559

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C +   +         L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEKPFATTEMLYIDPDTCIDCGACVEECPV 58

Query: 53 DAIK--PDTEPGLELWLKINSEYATQWPNITTKKESL 87
          +AI    D +   E +L IN++Y T+ P      E L
Sbjct: 59 EAIYAENDLDEVDEPYLDINAQYYTKHPIGPDWPEPL 95


>gi|117573290|gb|ABK40821.1| ferredoxin [Pseudomonas sp. C10-181]
          Length = 89

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 19 EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQ 76
          EVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E ++ +N+E A  
Sbjct: 1  EVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGMENFIVLNAELADI 60

Query: 77 WPNITTKKESLPSAAKMDGVKQK 99
          WPNIT KK++LP A + DG + K
Sbjct: 61 WPNITEKKDALPDAEEWDGKEGK 83


>gi|83816596|ref|YP_445271.1| ferredoxin-1 [Salinibacter ruber DSM 13855]
 gi|294507140|ref|YP_003571198.1| Ferredoxin-1 [Salinibacter ruber M8]
 gi|83757990|gb|ABC46103.1| ferredoxin-1 [Salinibacter ruber DSM 13855]
 gi|294343468|emb|CBH24246.1| Ferredoxin-1 [Salinibacter ruber M8]
          Length = 114

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 61/93 (65%), Gaps = 6/93 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YVVTE CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI PD  
Sbjct: 1  MPYVVTEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPDDQ 60

Query: 60 -EPGLELWLKINSEYATQWP----NITTKKESL 87
               E +++ N   + QW     N+T K   L
Sbjct: 61 LPEEYEHYIQWNEYLSNQWRELGYNVTEKTGPL 93


>gi|254455104|ref|ZP_05068540.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
 gi|198263806|gb|EDY88077.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
          Length = 78

 Score = 83.9 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/77 (58%), Positives = 59/77 (76%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L IHPDECIDCGVCEPECP DAI  DT+ G E WL++NS++A +WPNI  + E+L +A 
Sbjct: 1   MLVIHPDECIDCGVCEPECPADAILADTDQGAETWLELNSKFAAKWPNIIQQSEALANAE 60

Query: 92  KMDGVKQKYEKYFSPNP 108
           + DG++ K++KYFS  P
Sbjct: 61  EYDGMENKFDKYFSSKP 77


>gi|226308457|ref|YP_002768417.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226187574|dbj|BAH35678.1| probable ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 560

 Score = 83.9 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 12/89 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C +   +         L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEAPFATTEMLYIDPDTCIDCGACVDECPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPN 79
          +AI PD E       +L++N+ Y  + P 
Sbjct: 59 EAIFPDNELDEDDAPYLQMNASYFEKHPM 87


>gi|52857654|gb|AAU89080.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score = 83.9 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 60/75 (80%), Positives = 65/75 (86%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYAT 75
            LE WL +++EYA 
Sbjct: 61 QNLEKWLGVSAEYAK 75


>gi|32474247|ref|NP_867241.1| ferredoxin [Rhodopirellula baltica SH 1]
 gi|32444785|emb|CAD74787.1| ferredoxin [Rhodopirellula baltica SH 1]
          Length = 91

 Score = 83.5 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 2/89 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--E 60
          +VV E C  CK+TDCV VCPV+CFYEGE  L IHP+ECIDC  C PECPV+AI  +    
Sbjct: 2  HVVAEPCSGCKYTDCVVVCPVECFYEGEQMLYIHPEECIDCEACVPECPVEAIFHEDNLP 61

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPS 89
             + ++++N+E + +   IT KKE L  
Sbjct: 62 EEWQSYIELNAEMSEKTEVITEKKEPLAD 90


>gi|283780774|ref|YP_003371529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pirellula staleyi DSM 6068]
 gi|283439227|gb|ADB17669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
          staleyi DSM 6068]
          Length = 92

 Score = 83.5 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/91 (53%), Positives = 61/91 (67%), Gaps = 2/91 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +VV + C  CK+TDCV VCPV+CFYEGE  L IHPDECIDC  C PECPV+AI     
Sbjct: 1  MAHVVCQPCFGCKYTDCVVVCPVECFYEGEQILYIHPDECIDCEACVPECPVEAIFHQDN 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPS 89
               + ++++N+E A Q P+IT KKE L  
Sbjct: 61 VPEDQKPFIELNAEMAPQSPSITEKKEPLAG 91


>gi|54024557|ref|YP_118799.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54016065|dbj|BAD57435.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 554

 Score = 83.1 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 12/92 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPVDC               L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQRC--CNDASCVAECPVDCIRPRPEDPEFTSAEMLYIDPETCIDCGACFEACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITT 82
           A+  + E    L+ + +IN+++  + P  T 
Sbjct: 59 GAVYAEDELPAQLDRYREINADWFARHPMTTD 90


>gi|111018949|ref|YP_701921.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110818479|gb|ABG93763.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 553

 Score = 82.3 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +             L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQAC--CNDASCVSACPVNCIHPTPEEREFAQTEMLHIDPETCIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNIT 81
          DAI P+ +    L  +  IN+EY T  P  T
Sbjct: 59 DAIFPEDKLIGSLTRYKDINAEYYTTNPMPT 89


>gi|254514874|ref|ZP_05126935.1| RecA DNA recombination protein [gamma proteobacterium NOR5-3]
 gi|219677117|gb|EED33482.1| RecA DNA recombination protein [gamma proteobacterium NOR5-3]
          Length = 90

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 2/85 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
           +EVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E     +++L++N+E A 
Sbjct: 1   MEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDELPADQQVFLELNAELAE 60

Query: 76  QWPNITTKKESLPSAAKMDGVKQKY 100
            WP IT  K +   A +  G   K 
Sbjct: 61  VWPCITEMKPAPEDAEEWAGKPGKL 85


>gi|325110113|ref|YP_004271181.1| ferredoxin [Planctomyces brasiliensis DSM 5305]
 gi|324970381|gb|ADY61159.1| ferredoxin [Planctomyces brasiliensis DSM 5305]
          Length = 92

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/91 (51%), Positives = 60/91 (65%), Gaps = 2/91 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +VV + C  CK+TDCV VCPV+CFYEG+  L IHPDECIDC  C PECPV+AI  +  
Sbjct: 1  MPHVVCQPCFNCKYTDCVVVCPVECFYEGDKMLYIHPDECIDCEACVPECPVEAIFHEDN 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPS 89
               + +++IN+E +   P IT KKE L  
Sbjct: 61 VPDEWKEYVEINAEKSADTPVITEKKEPLAD 91


>gi|119714883|ref|YP_921848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nocardioides sp. JS614]
 gi|119535544|gb|ABL80161.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nocardioides sp. JS614]
          Length = 544

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          MT+V+T++C  C+   CV VCPV C               L I P  CIDCG C   CPV
Sbjct: 1  MTFVITQSC--CEDAACVTVCPVQCIRPRPGDPDFESTEQLYIDPSSCIDCGACATACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWP 78
          DAI P     P L  +  +N+EY    P
Sbjct: 59 DAIYPGDALPPSLSTFSAVNAEYFEARP 86


>gi|167563248|ref|ZP_02356164.1| ferredoxin [Burkholderia oklahomensis EO147]
          Length = 95

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 4/90 (4%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYAT 75
           + VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   D       ++ +N+E A 
Sbjct: 1   MAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAADDLPDDQTHFVALNAELAR 60

Query: 76  Q--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              WP IT KK +LP  A    VK K ++ 
Sbjct: 61  HPSWPRITGKKSALPDHATWTDVKGKLDQL 90


>gi|226361046|ref|YP_002778824.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239531|dbj|BAH49879.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 553

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +             L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQAC--CNDASCVSACPVNCIHPTPEEREFAQTEMLHIDPETCIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNIT 81
          DAI P+ +    L  +  IN+EY T  P  T
Sbjct: 59 DAIFPEDKLVGSLARYKDINAEYYTTNPMPT 89


>gi|126437410|ref|YP_001073101.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|126237210|gb|ABO00611.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 561

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFATAEMLYIDPAACVDCGACVSACPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWP-----NITTKKESLPSAAKMDGVKQ 98
            AI P+         ++++N+ +    P       T+K   +P A  +     
Sbjct: 59  GAIAPEATLTDSQLPFVELNAAFYPPRPPDEKVPPTSKLAPVPDAPVVRSRPD 111


>gi|108801425|ref|YP_641622.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119870578|ref|YP_940530.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. KMS]
 gi|108771844|gb|ABG10566.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119696667|gb|ABL93740.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
          Length = 561

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFATAEMLYIDPAACVDCGACVSACPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWP-----NITTKKESLPSAAKMDGVKQ 98
            AI P+         ++++N+ +    P       T+K   +P A  +     
Sbjct: 59  GAIAPEATLTDSQLPFVELNAAFYPPRPPDEKVPPTSKLAPVPDAPVVRSRPD 111


>gi|167461806|ref|ZP_02326895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 150

 Score = 80.8 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +V+T  CI  K  DCV VCPVDC +EGE+   I PD CI+CG CE ECPV AI  +  
Sbjct: 74  MAFVITSPCIGEKAADCVSVCPVDCIHEGEDQYYIDPDVCIECGACEVECPVTAIFHEDD 133

Query: 60  -EPGLELWLKINSEYAT 75
                + +++ N  +  
Sbjct: 134 VPDEEKSFIEKNRAFFA 150


>gi|15828144|ref|NP_302407.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae TN]
 gi|221230621|ref|YP_002504037.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae Br4923]
 gi|17432976|sp|O33064|FPRB_MYCLE RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|2440106|emb|CAB16679.1| ferredoxin [Mycobacterium leprae]
 gi|13093698|emb|CAC31089.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae]
 gi|219933728|emb|CAR72231.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae Br4923]
          Length = 555

 Score = 80.8 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M Y++T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPYIITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
            AI  DT   P    +++IN+ Y    P I  K   LP  +K+  V    + +    P
Sbjct: 59  GAIASDTRLAPKQLPFIEINASYYPARP-IDLK---LPPTSKLAPVIPAAQVHVRRRP 112


>gi|134100924|ref|YP_001106585.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003463|ref|ZP_06561436.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338]
 gi|133913547|emb|CAM03660.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338]
          Length = 508

 Score = 80.8 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M Y +T+ C  C    CV+VCPV+C +   +         L I P  CIDCG C   CPV
Sbjct: 1   MAYAITQTC--CNDASCVKVCPVNCIHPTPDEPDFGTAEMLHIDPATCIDCGACADACPV 58

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
           +AI P  E    L+ + ++N+ Y           +  P+    
Sbjct: 59  EAIFPVEELTGPLKPYAEVNAAYYAGRSPSPRAADVAPNFHSW 101


>gi|239942291|ref|ZP_04694228.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL
          15998]
 gi|239988757|ref|ZP_04709421.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL
          11379]
 gi|291445751|ref|ZP_06585141.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998]
 gi|291348698|gb|EFE75602.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998]
          Length = 556

 Score = 80.8 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 15/103 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
          DAI P              EYA         +E L    ++DG
Sbjct: 59 DAIFPVDSLSAGQ-----REYADINAAYYEGEEPLSVGDEVDG 96


>gi|54027063|ref|YP_121305.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54018571|dbj|BAD59941.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 556

 Score = 80.4 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPVDC     +         L I PD CIDCG C   CPV
Sbjct: 1  MAYVITQRC--CNDASCVSECPVDCIRPTPDQPEFATTEMLYIDPDTCIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          +AI  + +    L  +  +N+ Y  + P
Sbjct: 59 EAIFSEDDLTASLARFRDVNAAYFQRHP 86


>gi|262203739|ref|YP_003274947.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262087086|gb|ACY23054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 559

 Score = 80.4 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 17/106 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T  C  C    CV VCPV+C +   +         L I P+ CIDCG C  ECPV
Sbjct: 1   MAHVITRPC--CNDASCVAVCPVNCIHPTPDEPEFFTAESLYIDPETCIDCGACIDECPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPN----ITTKKES-LPSAA 91
           +AI PD   E   E +L+IN++Y          +  KK   LP   
Sbjct: 59  EAIIPDDSLEERDEPYLQINADYYKDHDVEGGLVPPKKAPQLPDKE 104


>gi|118470782|ref|YP_885518.1| ferredoxin FdxA [Mycobacterium smegmatis str. MC2 155]
 gi|118172069|gb|ABK72965.1| putative ferredoxin FdxA [Mycobacterium smegmatis str. MC2 155]
          Length = 114

 Score = 80.4 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIGRPCVDVKDRACVDECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
               L+ + + N+++     P       S   AAK+ GV        +  P   +
Sbjct: 61  LPEDLQPYQEENAKFFTDVLPGRAQPLGSPGGAAKL-GVVDADTPMVAELPPQGD 114


>gi|296393262|ref|YP_003658146.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Segniliparus rotundus DSM 44985]
 gi|296180409|gb|ADG97315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Segniliparus
           rotundus DSM 44985]
          Length = 112

 Score = 80.0 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VV E C+      CVE CPVDC Y G+  + I+PD CIDCG CE  CPV+AI    D
Sbjct: 1   MAFVVAEPCVDVIDRSCVEECPVDCMYLGKRMVYINPDLCIDCGACESVCPVEAIYNEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + + N+++      +      + +A+++ G   +   Y +  P
Sbjct: 61  LPDEWSAFKEANAQFFEGVEGLPEPGSCVGNASEL-GELGRDAPYVAALP 109


>gi|325675367|ref|ZP_08155051.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707]
 gi|325553338|gb|EGD23016.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707]
          Length = 564

 Score = 80.0 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MAYVITQTC--CNDASCVSACPVNCIHPTPEEAEFATTEMLYIEPQACIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          +AI P+ +    L+ + +IN++Y T+ P
Sbjct: 59 NAIFPEDQLSESLQRYREINADYYTRHP 86


>gi|34581123|ref|ZP_00142603.1| ferredoxin [Rickettsia sibirica 246]
 gi|28262508|gb|EAA26012.1| ferredoxin [Rickettsia sibirica 246]
          Length = 127

 Score = 80.0 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 65/90 (72%), Gaps = 7/90 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIK 56
          MTYVVT+ C+ CK+TDCVEVCPVDCFYEG    +  L I+P+ECIDCGVC P+CP+ AIK
Sbjct: 1  MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPNECIDCGVCVPDCPIGAIK 60

Query: 57 PDTEPGLELWLKINSEYATQ--WPNITTKK 84
          P++   +E W++   ++     W NIT KK
Sbjct: 61 PESPGLIE-WVERAKDFIENKGWKNITKKK 89


>gi|296165553|ref|ZP_06848081.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899092|gb|EFG78570.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 539

 Score = 80.0 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          MTYV+T++C  CK   CV VCPVDC           G   L I P  CIDCG C   CPV
Sbjct: 1  MTYVITQSC--CKDASCVPVCPVDCIRPVGATGEITGTEMLYIDPVTCIDCGACVDACPV 58

Query: 53 DAI--KPDTEPGLELWLKINSEYATQWP 78
          DAI  + +  P LE +  INS Y    P
Sbjct: 59 DAIYYEEELPPELERFKDINSSYFEHHP 86


>gi|118467681|ref|YP_889914.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium smegmatis
          str. MC2 155]
 gi|118168968|gb|ABK69864.1| probable ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          smegmatis str. MC2 155]
          Length = 557

 Score = 80.0 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I PD C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPDACVDCGACVSACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
           AI PDT  EP    +++IN+ +   +P    K   
Sbjct: 59 GAIAPDTRLEPRQLPFVEINAAF---YPKREGKLPP 91


>gi|120405980|ref|YP_955809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119958798|gb|ABM15803.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 559

 Score = 80.0 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 20/123 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CSDGSCVYACPVNCIHPTPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            AI P+T   P    ++++N+ +         +   LP  +K+  V +  E      PGG
Sbjct: 59  GAIAPETGLAPDQLPFVELNAAF------YPKRDGKLPPTSKLAPVLEAPE--VRRRPGG 110

Query: 111 KNT 113
             T
Sbjct: 111 PLT 113


>gi|312140996|ref|YP_004008332.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|311890335|emb|CBH49653.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
          Length = 578

 Score = 79.6 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M YV+T+ C  C    CV  CPV+C +             L I P  CIDCG C   CPV
Sbjct: 15  MAYVITQTC--CNDASCVSACPVNCIHPTPEEAEFATTEMLYIEPQACIDCGACVDACPV 72

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWP 78
           +AI P+ +    L+ + +IN++Y T+ P
Sbjct: 73  NAIFPEDQLSESLQRYREINADYYTRHP 100


>gi|167570432|ref|ZP_02363306.1| ferredoxin [Burkholderia oklahomensis C6786]
          Length = 93

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 4/87 (4%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYATQ-- 76
           CPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   D       ++ +N+E A    
Sbjct: 2   CPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAADDLPDDQTHFVALNAELARHPS 61

Query: 77  WPNITTKKESLPSAAKMDGVKQKYEKY 103
           WP IT KK +LP  A    VK K ++ 
Sbjct: 62  WPRITGKKSALPDHATWTDVKGKLDQL 88


>gi|146337764|ref|YP_001202812.1| ferredoxin II (fragment) [Bradyrhizobium sp. ORS278]
 gi|146190570|emb|CAL74572.1| ferredoxin II (fragment) [Bradyrhizobium sp. ORS278]
          Length = 68

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 48/68 (70%)

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           +CEPECP DAIKPDTEPGLE WL +N+EYA  WPNIT KK+    A + DG   K+EKYF
Sbjct: 1   MCEPECPADAIKPDTEPGLEKWLGVNAEYAKSWPNITQKKDPPGDAKEHDGEDGKFEKYF 60

Query: 105 SPNPGGKN 112
           S   G  +
Sbjct: 61  SSKAGAGD 68


>gi|299067165|emb|CBJ38361.1| Ferredoxin (fdxA) [Ralstonia solanacearum CMR15]
          Length = 91

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 56/92 (60%), Gaps = 4/92 (4%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D     + W+ IN++ A 
Sbjct: 1   MDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPADQQKWIAINADLAQ 60

Query: 76  Q-WPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
             WP+IT  K  LP A +   VK K E+Y   
Sbjct: 61  AGWPSITKTKTPLPDAEEWKDVKDK-EQYLER 91


>gi|207743547|ref|YP_002259939.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|206594945|emb|CAQ61872.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
          Length = 91

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 56/92 (60%), Gaps = 4/92 (4%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D     + W+ IN+E A 
Sbjct: 1   MDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPADQQKWIAINAELAQ 60

Query: 76  Q-WPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
             WP+IT  K  LP A +   VK K E+Y   
Sbjct: 61  AGWPSITKTKSPLPEADQWKDVKDK-EQYLER 91


>gi|254449213|ref|ZP_05062662.1| ferredoxin, 4Fe-4S [gamma proteobacterium HTCC5015]
 gi|198261190|gb|EDY85486.1| ferredoxin, 4Fe-4S [gamma proteobacterium HTCC5015]
          Length = 85

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNI 80
           +DCF+EG NFL I PD CIDC +C P CP +AI PD E   G   +  +N+E +  WP +
Sbjct: 1   MDCFHEGPNFLVIDPDACIDCSLCVPACPAEAIYPDDELPEGQAHFTALNAELSKLWPVL 60

Query: 81  TTKKESLPSAAKMDGVKQKYEKY 103
              K  LP A   DG   K    
Sbjct: 61  DEPKAPLPDADDWDGEPDKLSHL 83


>gi|320103065|ref|YP_004178656.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Isosphaera pallida ATCC 43644]
 gi|319750347|gb|ADV62107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Isosphaera
          pallida ATCC 43644]
          Length = 98

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +VVT  C  CK+TDCV VCPV+CFYEGE  L IHPDECIDC  C PECPV+AI  +  
Sbjct: 1  MAHVVTAPCFECKYTDCVVVCPVECFYEGEQMLYIHPDECIDCEACVPECPVEAIFHEDN 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAA 91
               + ++ +N+E A   P IT  K  +   A
Sbjct: 61 VPADYKEFIALNAEKAPHLPVITQSKTPMEGPA 93


>gi|319949121|ref|ZP_08023214.1| putative ferredoxin reductase [Dietzia cinnamea P4]
 gi|319437231|gb|EFV92258.1| putative ferredoxin reductase [Dietzia cinnamea P4]
          Length = 551

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T+ C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQAC--CADASCVHACPVNCIHPTPDEPDFATAEMLYIDPVSCVDCGACVGACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEY 73
           AI P TE  P    +L+IN+E 
Sbjct: 59 GAIVPHTELAPEQHDFLQINAEL 81


>gi|283780772|ref|YP_003371527.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pirellula staleyi DSM 6068]
 gi|283439225|gb|ADB17667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
          staleyi DSM 6068]
          Length = 90

 Score = 78.5 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT+VV + C  CKHTDCV VCP DCF+EG+  L I PD CIDC  C  ECPV+AI  D  
Sbjct: 1  MTHVVCKACFGCKHTDCVVVCPCDCFHEGDQMLYIDPDACIDCCACSSECPVEAIFIDDA 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESL 87
                 ++++N+E  TQ P+IT KK+ L
Sbjct: 61 VPADQLAFIQLNAEMVTQTPSITQKKKPL 89


>gi|326329869|ref|ZP_08196186.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
 gi|325952336|gb|EGD44359.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
          Length = 560

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +             L +    C+DCG C   CP 
Sbjct: 1  MPHVVTQSC--CADASCVVACPVNCIHPAPGEPGFGEAEMLYVDAKSCVDCGACVTACPA 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWP 78
          DAI P T    G + +L IN+EY   +P
Sbjct: 59 DAIVPHTTLSEGQKPFLAINAEYFEVFP 86


>gi|119952330|ref|YP_949931.1| putative ferredoxin-NADP reductase [Arthrobacter aurescens TC1]
 gi|119951460|gb|ABM10370.1| putative Ferredoxin-NADP reductase [Arthrobacter aurescens TC1]
          Length = 531

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          MTYV+T  C  C    C+ VCPV C               L I P  CIDCG C  ECPV
Sbjct: 1  MTYVITHGC--CSDASCIPVCPVQCIRPRPGDPDFTTAEQLYIDPATCIDCGACMDECPV 58

Query: 53 DAIK--PDTEPGLELWLKINSEYATQWPNI-TTKKESL 87
           AI    D    L  +L +N++Y    P + ++  E  
Sbjct: 59 SAIHPEWDLPDELSEYLAVNADYYVDNPIVESSPVEPP 96


>gi|189913023|ref|YP_001964912.1| Conserved ferredoxin oxidoreductase-like hypothetical protein
          [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Ames)']
 gi|189913352|ref|YP_001964581.1| Ferredoxin [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Paris)']
 gi|167777699|gb|ABZ95999.1| Conserved ferredoxin oxidoreductase-like hypothetical protein
          [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Ames)']
 gi|167781420|gb|ABZ99717.1| Ferredoxin [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Paris)']
          Length = 99

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 2/93 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          M YVVTE C+ CK+T C  VCPV+ F+E  + L I PD CIDC  C+ ECP+DAI    D
Sbjct: 1  MAYVVTEICVDCKYTSCAAVCPVEAFHEAPDTLYIDPDTCIDCNACQYECPIDAIFPDYD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
               +  +++N++ A ++P I T K  L  A 
Sbjct: 61 VPEKHKPSIEVNAKEANKFPVIVTTKPPLKGAK 93


>gi|218288758|ref|ZP_03493021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|218241116|gb|EED08292.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
          Length = 80

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          MTYV+T  CI  K  DCVEVCPVD  ++G     I P+ CIDCG CEP CPV AI  +  
Sbjct: 2  MTYVITSPCIGEKAADCVEVCPVDAIHDGGATYLIDPERCIDCGACEPVCPVSAIFHEAS 61

Query: 59 TEPGLELWLKINSEYAT 75
                 W++IN  +  
Sbjct: 62 VPDDERHWIEINRAFFQ 78


>gi|33597853|ref|NP_885496.1| ferredoxin [Bordetella parapertussis 12822]
 gi|33602756|ref|NP_890316.1| ferredoxin [Bordetella bronchiseptica RB50]
 gi|33574282|emb|CAE38615.1| ferredoxin [Bordetella parapertussis]
 gi|33577198|emb|CAE35755.1| ferredoxin [Bordetella bronchiseptica RB50]
          Length = 90

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC PECP +AI    D       ++ +N E + 
Sbjct: 1   MDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEEDVPQDQVPFIALNVELSA 60

Query: 76  QWPNITTKKESLPSAAKMDGVKQKYE 101
           ++P+I+  K+ L  A + +GV+ K +
Sbjct: 61  EFPSISRAKKPLEDADQWNGVQDKLQ 86


>gi|317509391|ref|ZP_07967010.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
 gi|316252314|gb|EFV11765.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
          Length = 548

 Score = 78.1 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 12/84 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTQSC--CSDGSCVFACPVNCIHPTPDEPDFLTAEMLHIDPAACVDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYA 74
          +AI PDT+  P    +L++N+ Y 
Sbjct: 59 EAIVPDTKLAPKQLPFLELNASYF 82


>gi|302527244|ref|ZP_07279586.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4]
 gi|302436139|gb|EFL07955.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4]
          Length = 500

 Score = 78.1 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C +   +         L + P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CNDATCVSVCPVNCIHPTPDEPDFGTTEMLYVDPASCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
          DAI P       ++++  IN+++    P +       P+  + 
Sbjct: 59 DAIFPVDLLTDSMKVYAGINADFFADRPAVAAN--PAPNFHRW 99


>gi|326778460|ref|ZP_08237725.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus
          XylebKG-1]
 gi|326658793|gb|EGE43639.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus
          XylebKG-1]
          Length = 554

 Score = 78.1 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
          DAI P      G   +  IN+ Y             
Sbjct: 59 DAIFPVDALSAGQREYADINAAYYEGAEPAPEVAGP 94


>gi|182437825|ref|YP_001825544.1| putative ferredoxin reductase [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178466341|dbj|BAG20861.1| putative ferredoxin reductase [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 554

 Score = 78.1 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
          DAI P      G   +  IN+ Y             
Sbjct: 59 DAIFPVDALSAGQREYADINAAYYEGAEPAPEVAGP 94


>gi|41406923|ref|NP_959759.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395273|gb|AAS03142.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score = 78.1 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESL 87
           AI PD   +     +++IN+ +  + P    +K   
Sbjct: 59 GAIAPDNRLDDKQLPFVEINASFYPKRP--AGQKLPP 93


>gi|315442745|ref|YP_004075624.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
          [Mycobacterium sp. Spyr1]
 gi|315261048|gb|ADT97789.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
          [Mycobacterium sp. Spyr1]
          Length = 557

 Score = 77.7 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKES 86
           AI PD++  P    ++++N+ +   +P    K   
Sbjct: 59 GAIAPDSKLTPEQLPFVELNAAF---YPKREGKLPP 91


>gi|145222311|ref|YP_001132989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium gilvum PYR-GCK]
 gi|145214797|gb|ABP44201.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium gilvum PYR-GCK]
          Length = 557

 Score = 77.7 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKES 86
           AI PD++  P    ++++N+ +   +P    K   
Sbjct: 59 GAIAPDSKLTPEQLPFVELNAAF---YPKREGKLPP 91


>gi|296169651|ref|ZP_06851269.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum
          ATCC BAA-614]
 gi|295895648|gb|EFG75344.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum
          ATCC BAA-614]
          Length = 563

 Score = 77.7 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLP 88
           AI PDT  +     +++IN+ +   +P     ++  P
Sbjct: 59 GAIAPDTRLDSKQLPFVEINASF---YPERPEGEKVPP 93


>gi|111025066|ref|YP_707486.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|110824045|gb|ABG99328.1| ferredoxin [Rhodococcus jostii RHA1]
          Length = 128

 Score = 77.3 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ E CI      CVE CPVDC YEG   L IHPDECIDCG CEP CPV+AI    D
Sbjct: 1   MTYVIAEPCIDVMDRACVEECPVDCIYEGGRSLYIHPDECIDCGACEPVCPVEAIYYEAD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                E +   N+ +             LP A+   G+     K 
Sbjct: 61  LPARWEAFTDDNARFF---------HSPLPGASAALGMPGGAGKL 96


>gi|238650840|ref|YP_002916695.1| ferredoxin [Rickettsia peacockii str. Rustic]
 gi|238624938|gb|ACR47644.1| ferredoxin [Rickettsia peacockii str. Rustic]
          Length = 108

 Score = 77.3 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 65/90 (72%), Gaps = 7/90 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIK 56
          MTYVVT+ C+ CK+TDCVEVCPVDCFYEG    +  L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1  MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57 PDTEPGLELWLKINSEYATQ--WPNITTKK 84
          P++   +E W++   ++     W NIT KK
Sbjct: 61 PESPGLIE-WVERAKDFIENKGWKNITKKK 89


>gi|188575948|ref|YP_001912877.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520400|gb|ACD58345.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 85

 Score = 76.9 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNI 80
           +DCF+ G NFL I PDECIDC +CEPECP +AI P+     G E ++ +N+E A  WP +
Sbjct: 1   MDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDDVPAGQEGFVALNAELAKVWPVL 60

Query: 81  TTKKESLPSAAKMDGVKQKYEKY 103
           T ++E LP AA+ DG   K    
Sbjct: 61  TVRQEPLPDAAEWDGKPNKLPLL 83


>gi|121610433|ref|YP_998240.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121555073|gb|ABM59222.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Verminephrobacter eiseniae EF01-2]
          Length = 113

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+T  CI  K   CV+ CPVDC Y G   L IHPDECIDCGVCEP CP  AI  D  
Sbjct: 1  MAYVITTGCIDVKDGACVQCCPVDCIYTGGRTLYIHPDECIDCGVCEPACPTQAIYEDHR 60

Query: 60 -EPGLELWLKINSEYA 74
              L  +L IN E+ 
Sbjct: 61 LPAPLRPFLAINREFF 76


>gi|297195797|ref|ZP_06913195.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152954|gb|EFH32068.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 452

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1   MTYAITQTC--CSDATCVAVCPVNCIHPTPEERAFGSTEMLYIDPRSCIDCGACADACPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
           DAI P        + +  IN+ Y      +       P+       + K 
Sbjct: 59  DAIFPVDSLSGSQQEYAAINAAYFED--QVPQPAGDSPNFHVWGAPEFKR 106


>gi|320012396|gb|ADW07246.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Streptomyces flavogriseus ATCC 33331]
          Length = 556

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 12/96 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CSDATCVSVCPVNCIHPTPEEPDFGRTEMLYIDPRSCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
          +A+ P          +  IN+EY          +  
Sbjct: 59 EAVFPVDSLPAAQAEYGPINAEYFAGREPGQDPEGP 94


>gi|226359497|ref|YP_002777274.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226237981|dbj|BAH48329.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 128

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 51/105 (48%), Gaps = 11/105 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E CI      CVE CPVDC YEG   L IHPDECIDCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCIDVLDRACVEECPVDCIYEGGRSLYIHPDECIDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  +   N+ +             LP A+   G+     K 
Sbjct: 61  LPARWVAFTDDNARFF---------HSPLPGASAALGMPGGAGKL 96


>gi|3334183|sp|Q45560|FER_BACSC RecName: Full=Ferredoxin 7Fe; AltName: Full=Seven-iron ferredoxin
 gi|474962|dbj|BAA06187.1| ferredoxin [Bacillus schlegelii]
          Length = 78

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +  
Sbjct: 1  MAYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +++ N ++  
Sbjct: 61 VPEEWKSYIQKNRDFFK 77


>gi|226304299|ref|YP_002764257.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226183414|dbj|BAH31518.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
           PR4]
          Length = 574

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 26/115 (22%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV VCP +C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDAACVVVCPANCIHPTPDEPDYARTEILYIDPRSCVDCGACIQACPV 58

Query: 53  DAIKPDTE--PGLELWLKINSEYAT--------------QWPNITTKKESLPSAA 91
           DAI P  E  P    + ++N+ Y                    ++ ++    SA 
Sbjct: 59  DAIVPHDELTPQTIRYAELNALYFAGGSAPAGSPQTEIGISQLVSQRRHPPESAK 113


>gi|258653795|ref|YP_003202951.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nakamurella multipartita DSM 44233]
 gi|258557020|gb|ACV79962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
          multipartita DSM 44233]
          Length = 114

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV AI  +  
Sbjct: 1  MTYVIAEPCIDVLDRACVEECPVDCIYEGARALYIHPDECVDCGACEPVCPVQAIFYEDD 60

Query: 60 -EPGLELWLKINSEYA-TQWPNITTKKESLPSA 90
               E +   N+ +     P  +    S   A
Sbjct: 61 VPNQWEAFTDDNARFFTDTLPGRSQPVASPGGA 93


>gi|296395410|ref|YP_003660294.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM
          44985]
 gi|296182557|gb|ADG99463.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM
          44985]
          Length = 556

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 12/84 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFLTAETLHIDPAACVDCGACVHACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYA 74
          DAI PD++   E   +L+IN+ + 
Sbjct: 59 DAIAPDSKLTAEQLPFLEINASFF 82


>gi|219848770|ref|YP_002463203.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus aggregans DSM 9485]
 gi|219543029|gb|ACL24767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus aggregans DSM 9485]
          Length = 78

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+TE CI  K   CV VCPVDC YEG++   I+PDECIDCG CEPECPV+AI  D  
Sbjct: 1  MPYVITEPCIGTKDASCVAVCPVDCIYEGDDQYYINPDECIDCGACEPECPVEAIFADDA 60

Query: 60 -EPGLELWLKINSEYA 74
               + +++ N ++ 
Sbjct: 61 VPEQWKSYIEKNRKFF 76


>gi|238563896|ref|ZP_04610789.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|238519725|gb|EEP83193.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
          Length = 76

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1  MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + +  +N+E A
Sbjct: 61 VPGDQQHFTALNAELA 76


>gi|15865463|emb|CAC81334.1| putative ferredoxin [Pseudomonas sp. KIE171]
          Length = 112

 Score = 76.2 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YV+++ CI  +   CV+VCPVDC YE E  L I PDEC +CG CE  CPV AI     
Sbjct: 1   MPYVISDPCIKSRDQACVDVCPVDCIYEAEGRLWIQPDECTECGACESVCPVTAICYVDA 60

Query: 61  PGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
              +  L+   E+     P       S   A K+  +K  + +   
Sbjct: 61  ESDDQDLREAREFFDTVLPGCDGPIGSPRGAQKVGRIKSDHPRVLK 106


>gi|300785297|ref|YP_003765588.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32]
 gi|299794811|gb|ADJ45186.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32]
          Length = 489

 Score = 75.8 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M + +T+ C  C    CV VCPV+C +   +         L I P  CIDCG C   CPV
Sbjct: 1   MAFAITQTC--CTDATCVSVCPVNCIHPTPDEPDFGTTDLLYIDPVTCIDCGACADACPV 58

Query: 53  DAIKP--DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
           DAI P  D    L  + +IN+EY      +       P+  + 
Sbjct: 59  DAIFPAGDLTGPLRAYEQINAEYYAGRDVLAE-VPVAPNFHRW 100


>gi|118616138|ref|YP_904470.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans
          Agy99]
 gi|118568248|gb|ABL02999.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans
          Agy99]
          Length = 561

 Score = 75.8 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVTCVDCGACVSACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEY 73
           AI PD+  +     +++IN+ Y
Sbjct: 59 GAIAPDSRLDSKQLPFVEINASY 81


>gi|284989663|ref|YP_003408217.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062908|gb|ADB73846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 108

 Score = 75.8 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+T+ C+      C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVITQACVDVLDKACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + +   N E+ +          S   AAK  G   K     +  P   
Sbjct: 61  VPDKWKDFYNANVEFFSDL-------GSPGGAAK-TGKIGKDHPLVAALPPQG 105


>gi|311111810|ref|YP_003983032.1| ferredoxin [Rothia dentocariosa ATCC 17931]
 gi|310943304|gb|ADP39598.1| ferredoxin [Rothia dentocariosa ATCC 17931]
          Length = 160

 Score = 75.8 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 55  MTYVIALPCVDVKDRACVEECPVDCIYEGDRTLYIHPDECVDCGACEPVCPVEAIYYEDD 114

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  ++  N+E+            S   AAKM G   K   + +  P   
Sbjct: 115 VPEEWSEYITANAEFFDDL-------GSPGGAAKM-GPTGKDVPFIAALPPQG 159


>gi|183984613|ref|YP_001852904.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M]
 gi|183177939|gb|ACC43049.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M]
          Length = 561

 Score = 75.8 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEY 73
           AI PD+  +     +++IN+ Y
Sbjct: 59 GAIAPDSRLDSKQLPFVEINASY 81


>gi|257068295|ref|YP_003154550.1| ferredoxin [Brachybacterium faecium DSM 4810]
 gi|256559113|gb|ACU84960.1| ferredoxin [Brachybacterium faecium DSM 4810]
          Length = 109

 Score = 75.4 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+   C+  K   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIALPCVDVKDRACVDECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           T      + K N E+            +   AAKM GV  K        P   N
Sbjct: 61  TPDQWAEYYKANVEFFDDL-------GAPGGAAKM-GVIDKDHPLIDALPPQPN 106


>gi|298346081|ref|YP_003718768.1| putative ferredoxin [Mobiluncus curtisii ATCC 43063]
 gi|304390160|ref|ZP_07372114.1| ferredoxin [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654663|ref|ZP_07907569.1| ferredoxin [Mobiluncus curtisii ATCC 51333]
 gi|315657420|ref|ZP_07910302.1| ferredoxin [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236142|gb|ADI67274.1| possible ferredoxin [Mobiluncus curtisii ATCC 43063]
 gi|304326642|gb|EFL93886.1| ferredoxin [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491127|gb|EFU80746.1| ferredoxin [Mobiluncus curtisii ATCC 51333]
 gi|315491892|gb|EFU81501.1| ferredoxin [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 107

 Score = 75.4 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEGE  L I+P EC+DCG CEP CP  AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACVDECPVDCIYEGERTLYINPLECVDCGACEPVCPPQAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  +L+   ++   + N        P  A + G   K +   +  P   
Sbjct: 61  LPEPWTDFLRAGRDFFADFDN------PTPGGASVVGKVDKDDPMIAALPPQG 107


>gi|317506365|ref|ZP_07964176.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
 gi|316255328|gb|EFV14587.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
          Length = 112

 Score = 75.4 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +VV E C+      C+E CPVDC Y G   + I+PD CIDCG CEP CPV+AI  +  
Sbjct: 1  MAFVVAEPCVDVLDRSCLEECPVDCMYTGNRMVYINPDLCIDCGACEPVCPVEAIYFEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKK 84
             G   + + N+E+    P +    
Sbjct: 61 VPEGWSAFRQANAEFFKDIPGLPEPG 86


>gi|73670190|ref|YP_306205.1| hypothetical protein Mbar_A2721 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397352|gb|AAZ71625.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 369

 Score = 75.4 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +VV E CI C    C+++CPV   Y       I P+ CI CG C   CPV AI  D E 
Sbjct: 189 PHVVEEKCIGC--QKCIKICPVGAPYLLGEVSMIDPNICISCGQCMEVCPVGAITIDWEH 246

Query: 62  GLELWLKINSEYA 74
            +  +L+  +EYA
Sbjct: 247 DIPNFLECLTEYA 259


>gi|317125122|ref|YP_004099234.1| ferredoxin FdxA [Intrasporangium calvum DSM 43043]
 gi|315589210|gb|ADU48507.1| putative ferredoxin FdxA [Intrasporangium calvum DSM 43043]
          Length = 118

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 56/96 (58%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   CI  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGSPCIDVKDRACVEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQW-PNITTKKESLPSAAKM 93
            P LE +L+ N+++  +          S   AA +
Sbjct: 61 LPPDLEPYLQDNADFFEETMAGQAEPLGSPGGAAAV 96


>gi|54023376|ref|YP_117618.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54014884|dbj|BAD56254.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 529

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YVVT++C  C    CV  CPV+C +   +         L + P  C+DCG C   CPV
Sbjct: 1  MPYVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLYVDPQACVDCGACATACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQ---WPNITTKKESL 87
          DAI    +   E   +++IN+++  Q    P +     + 
Sbjct: 59 DAITSSKKLTAEQLPFIEINADFYRQERPRPLLARPVPAP 98


>gi|306792261|ref|ZP_07430563.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           SUMu005]
 gi|308339184|gb|EFP28035.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           SUMu005]
          Length = 575

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 17/109 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWP-----NITTKKESLPSAAKMD 94
            AI P+T    E   +++IN+ Y  + P       T+K   +  AA++ 
Sbjct: 59  SAIAPNTRLDFEQLPFVEINASYYPKRPAGVKLAPTSKLAPVTPAAEVR 107


>gi|289555333|ref|ZP_06444543.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 605]
 gi|289439965|gb|EFD22458.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 605]
          Length = 550

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 17/109 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWP-----NITTKKESLPSAAKMD 94
            AI P+T    E   +++IN+ Y  + P       T+K   +  AA++ 
Sbjct: 59  SAIAPNTRLDFEQLPFVEINASYYPKRPAGVKLAPTSKLAPVTPAAEVR 107


>gi|15608026|ref|NP_215401.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium tuberculosis
           H37Rv]
 gi|15840300|ref|NP_335337.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31792074|ref|NP_854567.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium bovis
           AF2122/97]
 gi|121636809|ref|YP_977032.1| putative NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660663|ref|YP_001282186.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
           tuberculosis H37Ra]
 gi|148822094|ref|YP_001286848.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           F11]
 gi|167968347|ref|ZP_02550624.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           H37Ra]
 gi|215402685|ref|ZP_03414866.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|215410472|ref|ZP_03419280.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426152|ref|ZP_03424071.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|215429743|ref|ZP_03427662.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|218752551|ref|ZP_03531347.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|219556751|ref|ZP_03535827.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|224989280|ref|YP_002643967.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253800092|ref|YP_003033093.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 1435]
 gi|254231194|ref|ZP_04924521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           C]
 gi|254363817|ref|ZP_04979863.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254549863|ref|ZP_05140310.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185781|ref|ZP_05763255.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|260199906|ref|ZP_05767397.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|260204088|ref|ZP_05771579.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289442296|ref|ZP_06432040.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|289446451|ref|ZP_06436195.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289568850|ref|ZP_06449077.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|289573512|ref|ZP_06453739.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289744616|ref|ZP_06503994.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|289749408|ref|ZP_06508786.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|289752941|ref|ZP_06512319.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|289761017|ref|ZP_06520395.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|294996366|ref|ZP_06802057.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           210]
 gi|297633403|ref|ZP_06951183.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730388|ref|ZP_06959506.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN R506]
 gi|298524378|ref|ZP_07011787.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657715|ref|ZP_07814595.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037133|sp|P65528|FPRB_MYCTU RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|54037134|sp|P65529|FPRB_MYCBO RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|1314025|emb|CAA97393.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN
           REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13880462|gb|AAK45151.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31617661|emb|CAD93771.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN
           REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE)
           [Mycobacterium bovis AF2122/97]
 gi|121492456|emb|CAL70924.1| Probable nadph:adrenodoxin oxidoreductase fprB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124600253|gb|EAY59263.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           C]
 gi|134149331|gb|EBA41376.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148504815|gb|ABQ72624.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
           tuberculosis H37Ra]
 gi|148720621|gb|ABR05246.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           F11]
 gi|224772393|dbj|BAH25199.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321595|gb|ACT26198.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 1435]
 gi|289415215|gb|EFD12455.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|289419409|gb|EFD16610.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289537943|gb|EFD42521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289542604|gb|EFD46252.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|289685144|gb|EFD52632.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|289689995|gb|EFD57424.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|289693528|gb|EFD60957.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|289708523|gb|EFD72539.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|298494172|gb|EFI29466.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|323720595|gb|EGB29673.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904895|gb|EGE51828.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           W-148]
 gi|328459830|gb|AEB05253.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 4207]
          Length = 575

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 17/109 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWP-----NITTKKESLPSAAKMD 94
            AI P+T    E   +++IN+ Y  + P       T+K   +  AA++ 
Sbjct: 59  SAIAPNTRLDFEQLPFVEINASYYPKRPAGVKLAPTSKLAPVTPAAEVR 107


>gi|229491834|ref|ZP_04385655.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121]
 gi|229321515|gb|EEN87315.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121]
          Length = 575

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 12/101 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLHIDPQACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAA 91
          DAI P+++      ++L IN+++  +        + +P+A 
Sbjct: 59 DAIVPESKLTDPQRVFLSINADFYKEERPRPLLAKVIPAAH 99


>gi|226309118|ref|YP_002769078.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226188235|dbj|BAH36339.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 575

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 12/101 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLHIDPQACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAA 91
          DAI P+++      ++L IN+++  +        + +P+A 
Sbjct: 59 DAIVPESKLTDPQRVFLSINADFYKEERPRPLLAKVIPAAH 99


>gi|145220987|ref|YP_001131665.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium gilvum PYR-GCK]
 gi|145213473|gb|ABP42877.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium gilvum PYR-GCK]
          Length = 142

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 47/89 (52%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI  +T+
Sbjct: 26  MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 85

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPS 89
              E    ++   A     ++ + E L  
Sbjct: 86  LPDEELAFLDDNAAFFTTTLSGRDEPLGD 114


>gi|296140639|ref|YP_003647882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
 gi|296028773|gb|ADG79543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
          Length = 510

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 12/100 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    C   CPV+C +   +         L + P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDAACTFACPVNCIHPTPDEPGFATAEMLYVDPTTCVDCGACVTACPV 58

Query: 53 DAI--KPDTEPGLELWLKINSEYATQWPNITTKKESLPSA 90
          DAI          +++++IN   A   P  ++     P A
Sbjct: 59 DAIGPAHRLPEEHKVYIEINRSLAAADPANSSLGGPNPQA 98


>gi|296270986|ref|YP_003653618.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermobispora bispora DSM 43833]
 gi|296093773|gb|ADG89725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobispora
           bispora DSM 43833]
          Length = 108

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACVEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + + K N E+            S   A+K+ G   K     +  P   
Sbjct: 61  LPEQWKDFYKANVEFFDDL-------GSPGGASKL-GKINKDHPIVAALPPQG 105


>gi|257067244|ref|YP_003153499.1| ferredoxin [Brachybacterium faecium DSM 4810]
 gi|256558062|gb|ACU83909.1| ferredoxin [Brachybacterium faecium DSM 4810]
          Length = 109

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+   C+  K   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIALPCVDVKDRACVDECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           T      +   N E+            S   AAKM GV  K        P   N
Sbjct: 61  TPDQWAEYYNANVEFFDDL-------GSPGGAAKM-GVIDKDHPLVEALPPQPN 106


>gi|117927707|ref|YP_872258.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Acidothermus cellulolyticus 11B]
 gi|117648170|gb|ABK52272.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Acidothermus cellulolyticus 11B]
          Length = 117

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCIDVMDRACVEECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAK 92
                ++ + N+ +     P       S   A+K
Sbjct: 61 LPEQWTVYREDNAAFFHETLPGRDAPLGSPGGASK 95


>gi|163847117|ref|YP_001635161.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus aurantiacus J-10-fl]
 gi|222524953|ref|YP_002569424.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus sp. Y-400-fl]
 gi|163668406|gb|ABY34772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus aurantiacus J-10-fl]
 gi|222448832|gb|ACM53098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus sp. Y-400-fl]
          Length = 78

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M Y++ E CI  K   CV VCPVDC YEG++   I+PDECIDCG CEPECPV+AI  D  
Sbjct: 1  MPYIIAEPCIGTKDASCVAVCPVDCIYEGDDQYYINPDECIDCGACEPECPVEAIFADDS 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +++ N ++  
Sbjct: 61 VPEQWKSYIEKNRKFFE 77


>gi|255744608|ref|ZP_05418559.1| ferredoxin [Vibrio cholera CIRS 101]
 gi|261212100|ref|ZP_05926386.1| ferredoxin [Vibrio sp. RC341]
 gi|262161260|ref|ZP_06030371.1| ferredoxin [Vibrio cholerae INDRE 91/1]
 gi|262192462|ref|ZP_06050613.1| ferredoxin [Vibrio cholerae CT 5369-93]
 gi|255737639|gb|EET93033.1| ferredoxin [Vibrio cholera CIRS 101]
 gi|260838708|gb|EEX65359.1| ferredoxin [Vibrio sp. RC341]
 gi|262029010|gb|EEY47663.1| ferredoxin [Vibrio cholerae INDRE 91/1]
 gi|262031621|gb|EEY50208.1| ferredoxin [Vibrio cholerae CT 5369-93]
          Length = 75

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C PEC   AI  + E      +++++N+E A  WPN+T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVPECTAQAIFQEDELVGDQRIFIELNAELAEHWPNLTEVKPAMEDA 60

Query: 91  AKMDGVKQKYE 101
           AK DGV  K +
Sbjct: 61  AKWDGVPNKLD 71


>gi|269125402|ref|YP_003298772.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268310360|gb|ACY96734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomonospora curvata DSM 43183]
          Length = 107

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACIEECPVDCIYEGKRQLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                + + K+N+E+            S   A+K+ G   K   Y +  P  
Sbjct: 61  IPDQWKDFYKVNAEFFDDL-------GSPGGASKV-GKIDKDHPYVAALPPQ 104


>gi|150389480|ref|YP_001319529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149949342|gb|ABR47870.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 370

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+   CI C    CVE CPVD  +  +    I P+ CI CG C   CP  AI+   +   
Sbjct: 191 VMENLCIGC--QMCVENCPVDAIHMEDKKAVIDPEVCIGCGECITVCPKRAIEVQWKTDA 248

Query: 64  ELWLKINSEYA 74
            ++++  +EYA
Sbjct: 249 NIFVEKMAEYA 259


>gi|158318597|ref|YP_001511105.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Frankia sp. EAN1pec]
 gi|4325127|gb|AAD17275.1| ferredoxin I [Frankia sp. EuIK1]
 gi|158114002|gb|ABW16199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EAN1pec]
          Length = 113

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT  CI  K T C++ CPVD  YEG+  L I+P+EC +CG C   CP+ AI  D E
Sbjct: 1   MPYVVTSPCIDVKDTACLDECPVDAIYEGDRKLYINPNECTECGACASACPIGAIMLDLE 60

Query: 61  --PGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGVKQK 99
                  ++K   E+     P           A  +  +K  
Sbjct: 61  VPKAERPFVKSEKEFFTKVLPGRDEPLGDPGGAKTVGKIKAD 102


>gi|21228665|ref|NP_634587.1| ferredoxin [Methanosarcina mazei Go1]
 gi|20907167|gb|AAM32259.1| Ferredoxin [Methanosarcina mazei Go1]
          Length = 369

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +VV E CI C   +CVE+CPV       +   I+P  CI CG C   CP +AI  + E 
Sbjct: 189 PHVVEEKCIGC--GNCVEICPVGAASLEGDVSRINPGVCISCGQCMEVCPENAIDLNWEQ 246

Query: 62  GLELWLKINSEYA 74
            +  +L+  +EYA
Sbjct: 247 DIPEFLECMTEYA 259


>gi|88856142|ref|ZP_01130803.1| ferredoxin [marine actinobacterium PHSC20C1]
 gi|88814710|gb|EAR24571.1| ferredoxin [marine actinobacterium PHSC20C1]
          Length = 111

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 8/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDLKDRACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + K N E+            S   AAK+ GV  K        P G 
Sbjct: 61  LPDKWADYYKANVEFFDLLEV-----SSPGGAAKV-GVIHKDHALIVALPEGG 107


>gi|296170897|ref|ZP_06852434.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894446|gb|EFG74190.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 118

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + CI      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPVDAI  +  
Sbjct: 1  MTYVIGKPCIDVMDRACVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVDAIYYEDD 60

Query: 60 -EPGLELWLKINSE-YATQWPNITTKKESLPSAAKM 93
              L  +L  N+  +A   P       S   AAKM
Sbjct: 61 LPDELNPYLADNAAFFAETLPGRDAPLGSPGGAAKM 96


>gi|117929063|ref|YP_873614.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidothermus cellulolyticus 11B]
 gi|117649526|gb|ABK53628.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus
           cellulolyticus 11B]
          Length = 108

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ + C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAQPCVDVKDRACVDECPVDCIYEGQRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + + K+N E+            S   A+K+ GV        +  P   
Sbjct: 61  LPDQWKDYYKVNVEFFEDL-------GSPGGASKV-GVIDHDHPIVAALPPQG 105


>gi|262201358|ref|YP_003272566.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia bronchialis DSM 43247]
 gi|262084705|gb|ACY20673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
          bronchialis DSM 43247]
          Length = 527

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDA 54
          +V+T++C  C    CV VCPV+C +           + L I P+ CIDCG C   CPVDA
Sbjct: 2  FVITQSC--CSDAACVSVCPVNCIHPTPEERGFGSSDILHIDPEACIDCGACADACPVDA 59

Query: 55 IKPDT--EPGLELWLKINSEYATQWPNI 80
          I P        ++++ IN+++    P +
Sbjct: 60 IYPADRLGTRDKVFIDINADFYKNNPAV 87


>gi|116255229|ref|YP_771062.1| putative ferredoxin [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259877|emb|CAK02971.1| putative ferredoxin [Rhizobium leguminosarum bv. viciae 3841]
          Length = 108

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T+ CI  K  DC   CPVDC YEG     IHP ECI+CG+C   CPVDAI  D E
Sbjct: 1  MAYVITDPCIDVKDGDCTVACPVDCIYEGGRMFYIHPGECINCGLCLSVCPVDAISWDEE 60

Query: 61 PGLE--LWLKINSEYA 74
                 +  +N ++ 
Sbjct: 61 IPQSRVQFKAVNQDFF 76


>gi|312141637|ref|YP_004008973.1| ferredoxin [Rhodococcus equi 103S]
 gi|325673105|ref|ZP_08152799.1| ferredoxin [Rhodococcus equi ATCC 33707]
 gi|311890976|emb|CBH50295.1| ferredoxin [Rhodococcus equi 103S]
 gi|325556358|gb|EGD26026.1| ferredoxin [Rhodococcus equi ATCC 33707]
          Length = 106

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 49/94 (52%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ E CI      C+E CPVDC YEGE  L I+P+ECIDCG CE  CPV+AI  D +
Sbjct: 1  MAFVIGEACIDYMDRSCMEECPVDCIYEGERKLYINPNECIDCGACELACPVEAITVDRK 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
             E        +    P       +   AAK+D
Sbjct: 61 ADPEFKEDAKRFFLEILPTRAEPVGNPGGAAKID 94


>gi|119718522|ref|YP_925487.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nocardioides sp. JS614]
 gi|119539183|gb|ABL83800.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nocardioides sp. JS614]
          Length = 114

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E CI  +   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYVIGEPCIDVQDRACVDECPVDCIYEGARSLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSE-YATQWPNITTKKESLPSAAK 92
              L+ +   N+  +A   P       S   AAK
Sbjct: 61 LPAELQPYQDDNARFFAEVLPGRDRPIGSPGGAAK 95


>gi|288918987|ref|ZP_06413329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
 gi|288349633|gb|EFC83868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
          Length = 113

 Score = 73.5 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVT  CI  K   C++ CPVD  YEG   L I+P+EC +CG C   CP+ AI  D E
Sbjct: 1  MPYVVTSPCIDVKDGACLDECPVDAIYEGARKLYINPNECTECGACASACPIGAIMLDLE 60

Query: 61 --PGLELWLKINSE-YATQWPNITTKKESLPSAA 91
                 ++K + E ++   P           A 
Sbjct: 61 VPKPERPFVKTDKEFFSKALPGRDEPLGDPGGAK 94


>gi|300741914|ref|ZP_07071935.1| ferredoxin [Rothia dentocariosa M567]
 gi|300381099|gb|EFJ77661.1| ferredoxin [Rothia dentocariosa M567]
          Length = 106

 Score = 73.5 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACVEECPVDCIYEGDRTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  ++  N+E+            S   AAKM G   K   + +  P   
Sbjct: 61  VPEEWSEYITANAEFFDDL-------GSPGGAAKM-GPTGKDVPFIAALPPQG 105


>gi|20092258|ref|NP_618333.1| hypothetical protein MA3446 [Methanosarcina acetivorans C2A]
 gi|19917495|gb|AAM06813.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 360

 Score = 73.5 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +VV   CI C    CVE+CPV       +   I P  CI CG C   CP  AI  + E 
Sbjct: 180 PHVVEAKCIGC--GRCVEICPVGAASLEGDVSRIDPGICISCGQCMEVCPEGAIDINWEE 237

Query: 62  GLELWLKINSEYA 74
            +  +L+  +EYA
Sbjct: 238 DIPEFLECLTEYA 250


>gi|302547666|ref|ZP_07300008.1| ferredoxin [Streptomyces hygroscopicus ATCC 53653]
 gi|302465284|gb|EFL28377.1| ferredoxin [Streptomyces himastatinicus ATCC 53653]
          Length = 108

 Score = 73.5 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 40/90 (44%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+   C+      C+E CPVDC YEG   L I+P ECIDCG CE  CP  AI  D  
Sbjct: 1  MAYVIGPACVDIMDRSCMEECPVDCIYEGMRKLYINPVECIDCGACETACPEQAIAVDRL 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSA 90
             E        +    P  T    +   A
Sbjct: 61 AKPEHREDNRRFFTEPLPGRTEPLGTPGGA 90


>gi|269839181|ref|YP_003323873.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
 gi|269790911|gb|ACZ43051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
          Length = 83

 Score = 73.5 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 4/79 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+T  CI  K   CVEVCPVDC Y  +      I+PDECIDCG CEPECPV AI P+
Sbjct: 1  MPYVITAPCIGVKDASCVEVCPVDCIYTDDDAPQYYINPDECIDCGACEPECPVSAIYPE 60

Query: 59 T--EPGLELWLKINSEYAT 75
                 + +++IN+EY  
Sbjct: 61 DSVPEQWQDFIRINAEYFQ 79


>gi|72160895|ref|YP_288552.1| ferredoxin [Thermobifida fusca YX]
 gi|71914627|gb|AAZ54529.1| ferredoxin [Thermobifida fusca YX]
          Length = 106

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + K+N E+  +         S   A+K+ G   +     +  P   
Sbjct: 61  LPSEWSDFYKVNVEFFEEL-------GSPGGASKV-GKIDRDHPLVAALPPQG 105


>gi|240170645|ref|ZP_04749304.1| ferredoxin FdxA_1 [Mycobacterium kansasii ATCC 12478]
          Length = 118

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGKPCIDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAK 92
              LE +   N+ +     P       S   AAK
Sbjct: 61 LPAELEPYRADNAAFFTETLPGRDEPLGSPGGAAK 95


>gi|24217168|ref|NP_714651.1| ferredoxin [Leptospira interrogans serovar Lai str. 56601]
 gi|45655667|ref|YP_003476.1| ferredoxin [Leptospira interrogans serovar Copenhageni str.
          Fiocruz L1-130]
 gi|24202210|gb|AAN51666.1| hypothetical protein LB_107 [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45602638|gb|AAS72113.1| ferredoxin [Leptospira interrogans serovar Copenhageni str.
          Fiocruz L1-130]
          Length = 99

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE C  CK+T C  VCPV+ F EG + L I P  CIDC  C PECPV+AI PD E
Sbjct: 1  MAYVVTEPCRNCKYTYCAAVCPVEAFREGTDCLYIEPSVCIDCNKCRPECPVEAIYPDYE 60

Query: 61 PG--LELWLKINSEYATQWPNITTKKESL 87
                 W+++N++ A  +P I   K  L
Sbjct: 61 VPFVWRDWIEVNAQKAKCYPTILDVKIPL 89


>gi|148654468|ref|YP_001274673.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Roseiflexus sp. RS-1]
 gi|156740275|ref|YP_001430404.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Roseiflexus castenholzii DSM 13941]
 gi|148566578|gb|ABQ88723.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Roseiflexus sp. RS-1]
 gi|156231603|gb|ABU56386.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Roseiflexus
          castenholzii DSM 13941]
          Length = 78

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M Y++ E CI  K   CV VCPVDC YEGE+   I+P+ECIDCG CEPECPV+AI  D  
Sbjct: 1  MAYIIAEPCIGVKDASCVAVCPVDCIYEGEDQYYINPEECIDCGACEPECPVEAIFADDS 60

Query: 60 -EPGLELWLKINSEYA 74
                 +++ N  + 
Sbjct: 61 VPEQWHSYIEKNRAFF 76


>gi|157830220|pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
          Structures
          Length = 77

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +   
Sbjct: 1  AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFV 60

Query: 60 EPGLELWLKINSEYAT 75
              + +++ N ++  
Sbjct: 61 PEEWKSYIQKNRDFFK 76


>gi|314922814|gb|EFS86645.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL001PA1]
          Length = 135

 Score = 72.7 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 31  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 90

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
               E +L IN+E+  +  +        P  A   G   K        P   
Sbjct: 91  PGDQEKFLDINAEFFNELGS--------PGGAARLGPTHKDHPAVEALPPQG 134


>gi|331697480|ref|YP_004333719.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326952169|gb|AEA25866.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 114

 Score = 72.7 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 49/89 (55%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY++ E C+      CV+VCPVDC Y+G   L I+P ECI+CG CEPECPVDAI  + E
Sbjct: 1  MTYIIAEPCVDLMDRSCVDVCPVDCIYQGGRKLYINPGECIECGACEPECPVDAIVLEQE 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPS 89
             E    +    A  +  +  +   L  
Sbjct: 61 LTDEERPHLADNAAFFYETLPGRDAPLGE 89


>gi|269836661|ref|YP_003318889.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Sphaerobacter thermophilus DSM 20745]
 gi|269785924|gb|ACZ38067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sphaerobacter thermophilus DSM 20745]
          Length = 80

 Score = 72.7 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/79 (48%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYV+ E CI  K   CVEVCPVDC +  +      I PDECIDCGVC   CPV+AI  +
Sbjct: 1  MTYVIAEPCIGVKDASCVEVCPVDCIHSDDEAEQYYIDPDECIDCGVCAEVCPVEAIFFE 60

Query: 59 T--EPGLELWLKINSEYAT 75
                   +L+IN EY  
Sbjct: 61 DDLPEQWADFLRINREYFQ 79


>gi|282862944|ref|ZP_06272004.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
 gi|282561926|gb|EFB67468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
          Length = 548

 Score = 72.7 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    C+ VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CSDATCIAVCPVNCIHPTPEERDFGSTEMLHIDPKSCIDCGACADACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
          DAI P       L  + +IN+ Y            + P+    
Sbjct: 59 DAIFPVESLTGALREYEQINAAYYEGRE--AEPAVAGPNFHAW 99


>gi|239981284|ref|ZP_04703808.1| putative ferredoxin reductase [Streptomyces albus J1074]
 gi|291453142|ref|ZP_06592532.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074]
 gi|291356091|gb|EFE82993.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074]
          Length = 535

 Score = 72.7 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 12/80 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRSCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKIN 70
          DAI P    +P    +  +N
Sbjct: 59 DAIFPVDRLKPAHREYAALN 78


>gi|326330916|ref|ZP_08197216.1| ferredoxin [Nocardioidaceae bacterium Broad-1]
 gi|325951274|gb|EGD43314.1| ferredoxin [Nocardioidaceae bacterium Broad-1]
          Length = 107

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CP +AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACVDECPVDCIYEGKRMLYIHPDECVDCGACEPVCPPEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           T    + +   N ++            S   AA+M G   K   + +  P  
Sbjct: 61  TPEEWKEYYDANVKFFDDL-------GSPGGAARM-GEIDKDHPFVAALPPQ 104


>gi|331699698|ref|YP_004335937.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326954387|gb|AEA28084.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 112

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M+YV+  +C+      CV+ CPVDC Y G     ++P ECIDCG CEP CPV+AI P+++
Sbjct: 1  MSYVIGASCVDVTDRACVDECPVDCIYVGGRMAYVNPTECIDCGACEPVCPVEAIVPESD 60

Query: 61 --PGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGV 96
               + ++  N+ +     P       +   A ++  V
Sbjct: 61 VAESEQDFIAANAAFFLEVLPGRDEPLGNPGGAGQVGEV 99


>gi|331697009|ref|YP_004333248.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326951698|gb|AEA25395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 120

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRACVDECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ-WPNITTKKESLPSAAK 92
                  L+ N+ + T   P       S   AAK
Sbjct: 61 LPDRWAAHLEDNAAFFTTALPGRAAPLGSPGGAAK 95


>gi|41408824|ref|NP_961660.1| FdxA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118462225|ref|YP_882682.1| ferredoxin FdxA [Mycobacterium avium 104]
 gi|254775951|ref|ZP_05217467.1| putative ferredoxin FdxA [Mycobacterium avium subsp. avium ATCC
          25291]
 gi|41397183|gb|AAS05043.1| FdxA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118163512|gb|ABK64409.1| putative ferredoxin FdxA [Mycobacterium avium 104]
          Length = 118

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + CI      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGKPCIDVMDRACVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 --EPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
            E          + +A   P       S   AAK
Sbjct: 61 LPEDLKPHLADNEAFFAEPLPGRDAPLGSPGGAAK 95


>gi|120405481|ref|YP_955310.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119958299|gb|ABM15304.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 107

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++         +  S   A+K+       +      P G++
Sbjct: 61  VPDQWSAYTQINADFF-------VELGSPGGASKVGQTDNDPQAVKDLPPQGED 107


>gi|328949904|ref|YP_004367239.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinithermus hydrothermalis DSM 14884]
 gi|328450228|gb|AEB11129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinithermus hydrothermalis DSM 14884]
          Length = 79

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+TE CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITEPCIGVKDQSCTEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
                 +++ N + A
Sbjct: 61 VPEQWVSFIEKNRKLA 76


>gi|332671395|ref|YP_004454403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulomonas fimi ATCC 484]
 gi|332340433|gb|AEE47016.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cellulomonas
           fimi ATCC 484]
          Length = 108

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/110 (41%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + K N E+            S   AAKM G   K     +  P
Sbjct: 61  VPEQWSEYYKANVEFFDDL-------GSPGGAAKM-GEIDKDHPIIATLP 102


>gi|282854408|ref|ZP_06263745.1| putative ferredoxin [Propionibacterium acnes J139]
 gi|282583861|gb|EFB89241.1| putative ferredoxin [Propionibacterium acnes J139]
 gi|328906846|gb|EGG26612.1| putative ferredoxin [Propionibacterium sp. P08]
          Length = 106

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                E +L IN+E+  +  +        P  A   G   K        P   
Sbjct: 61  LPGDQEKFLDINAEFFNELGS--------PGGAARLGPTHKDHPAVEALPPQG 105


>gi|315442042|ref|YP_004074921.1| ferredoxin [Mycobacterium sp. Spyr1]
 gi|315260345|gb|ADT97086.1| ferredoxin [Mycobacterium sp. Spyr1]
          Length = 117

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 47/89 (52%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI  +T+
Sbjct: 1  MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPS 89
             E    ++   A     ++ + E L  
Sbjct: 61 LPDEELAFLDDNAAFFTTTLSGRDEPLGD 89


>gi|297564678|ref|YP_003683650.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849127|gb|ADH62142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 79

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+TE CI  K   CVEVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + ++  N + +
Sbjct: 61 VPAEFQSYIAKNRKLS 76


>gi|314966245|gb|EFT10344.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL082PA2]
 gi|314980771|gb|EFT24865.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA3]
 gi|315090258|gb|EFT62234.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA4]
 gi|315093409|gb|EFT65385.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL060PA1]
 gi|315102964|gb|EFT74940.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA2]
 gi|327327026|gb|EGE68807.1| ferredoxin [Propionibacterium acnes HL103PA1]
 gi|327331132|gb|EGE72872.1| ferredoxin [Propionibacterium acnes HL097PA1]
          Length = 135

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 31  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 90

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
               E +L IN+E+  +  +        P  A   G   K        P   
Sbjct: 91  PGDQEKFLDINAEFFNELGS--------PGGAARLGPTHKDHPAVEALPPQG 134


>gi|307323385|ref|ZP_07602595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
 gi|306890874|gb|EFN21850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
          Length = 106

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 42/90 (46%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+  +C+      C+E CPVDC YEGE  L I+P ECIDCG CE  CP  AI  D +
Sbjct: 1  MAYVIGASCVDIMDRSCMEECPVDCIYEGERKLYINPVECIDCGACEVACPEQAITVDRK 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSA 90
             E        +    P       +   A
Sbjct: 61 ADPEHRADNRRFFEEVLPGRDAPLGTPGGA 90


>gi|50842114|ref|YP_055341.1| ferredoxin [Propionibacterium acnes KPA171202]
 gi|289425779|ref|ZP_06427533.1| putative ferredoxin [Propionibacterium acnes SK187]
 gi|289426708|ref|ZP_06428436.1| putative ferredoxin [Propionibacterium acnes J165]
 gi|295130202|ref|YP_003580865.1| ferredoxin family protein [Propionibacterium acnes SK137]
 gi|50839716|gb|AAT82383.1| ferredoxin [Propionibacterium acnes KPA171202]
 gi|289153722|gb|EFD02429.1| putative ferredoxin [Propionibacterium acnes SK187]
 gi|289160034|gb|EFD08210.1| putative ferredoxin [Propionibacterium acnes J165]
 gi|291377123|gb|ADE00978.1| ferredoxin family protein [Propionibacterium acnes SK137]
 gi|313802321|gb|EFS43547.1| putative ferredoxin [Propionibacterium acnes HL110PA2]
 gi|313828097|gb|EFS65811.1| putative ferredoxin [Propionibacterium acnes HL063PA2]
 gi|313839087|gb|EFS76801.1| putative ferredoxin [Propionibacterium acnes HL086PA1]
 gi|314962320|gb|EFT06421.1| putative ferredoxin [Propionibacterium acnes HL082PA1]
 gi|315077406|gb|EFT49466.1| putative ferredoxin [Propionibacterium acnes HL053PA2]
 gi|327455186|gb|EGF01841.1| putative ferredoxin [Propionibacterium acnes HL092PA1]
 gi|332675037|gb|AEE71853.1| ferredoxin [Propionibacterium acnes 266]
          Length = 106

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYA 74
               E +L IN+E+ 
Sbjct: 61 LPGDQEKFLDINAEFF 76


>gi|158312725|ref|YP_001505233.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Frankia sp. EAN1pec]
 gi|158108130|gb|ABW10327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EAN1pec]
          Length = 107

 Score = 71.9 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +   N+ +  
Sbjct: 61 VPDQWKTFTDTNASFFE 77


>gi|317506366|ref|ZP_07964177.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255329|gb|EFV14588.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 108

 Score = 71.9 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVLDKACIEECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNI---TTKKESLPSAAKMDGVKQK 99
                  ++  N+E+  +  +        ++   A  +  + QK
Sbjct: 61  VPDEWTPFVTANAEFFDELGSPGGAAKVGKTPHDAEYVKSLPQK 104


>gi|119714164|ref|YP_919306.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nocardioides sp. JS614]
 gi|119526073|gb|ABL79443.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nocardioides sp. JS614]
          Length = 117

 Score = 71.9 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGQPCVDVMDRGCVDECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINS-EYATQWPNITTKKESLPSAAK 92
              L  +L  N+  ++      +    S   A+K
Sbjct: 61 LPGHLTPYLADNALFFSETLEGRSAPVGSPGGASK 95


>gi|331698393|ref|YP_004334632.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326953082|gb|AEA26779.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 114

 Score = 71.9 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/99 (41%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+   C+      CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYVIGLPCVDVLDRACVDECPVDCIYEGERALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSE-YATQWPNITTKKESLPSAAKMDGV 96
              L+ +   N+  +A   P       S   AAK+  +
Sbjct: 61 LPESLQEYQADNARFFAEPLPGRDAPLGSPGGAAKLGPI 99


>gi|118616772|ref|YP_905104.1| ferredoxin FdxC [Mycobacterium ulcerans Agy99]
 gi|118568882|gb|ABL03633.1| ferredoxin FdxC [Mycobacterium ulcerans Agy99]
          Length = 108

 Score = 71.9 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++         K  S   AAK+ G+ +   +     P   
Sbjct: 61  VPEQWSQYTQINADFFA-------KLGSPGGAAKV-GMTENDPQVVKDLPPQG 105


>gi|313763939|gb|EFS35303.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA1]
 gi|313771530|gb|EFS37496.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL074PA1]
 gi|313808190|gb|EFS46664.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA2]
 gi|313811344|gb|EFS49058.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA1]
 gi|313812527|gb|EFS50241.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA1]
 gi|313814934|gb|EFS52648.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA1]
 gi|313818956|gb|EFS56670.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA2]
 gi|313820786|gb|EFS58500.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA1]
 gi|313822450|gb|EFS60164.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA2]
 gi|313825755|gb|EFS63469.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL063PA1]
 gi|313830903|gb|EFS68617.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL007PA1]
 gi|313833330|gb|EFS71044.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL056PA1]
 gi|314914976|gb|EFS78807.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA4]
 gi|314918703|gb|EFS82534.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA1]
 gi|314920506|gb|EFS84337.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA3]
 gi|314932180|gb|EFS96011.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL067PA1]
 gi|314954553|gb|EFS98959.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA1]
 gi|314958650|gb|EFT02752.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA1]
 gi|314959746|gb|EFT03848.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA2]
 gi|314968248|gb|EFT12347.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA1]
 gi|314973790|gb|EFT17886.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL053PA1]
 gi|314976441|gb|EFT20536.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL045PA1]
 gi|314979128|gb|EFT23222.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA2]
 gi|314983280|gb|EFT27372.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA1]
 gi|314986685|gb|EFT30777.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA2]
 gi|314989427|gb|EFT33518.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA3]
 gi|315080151|gb|EFT52127.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL078PA1]
 gi|315084033|gb|EFT56009.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA2]
 gi|315085234|gb|EFT57210.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA3]
 gi|315089149|gb|EFT61125.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA1]
 gi|315096565|gb|EFT68541.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL038PA1]
 gi|315098973|gb|EFT70949.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA2]
 gi|315100787|gb|EFT72763.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA1]
 gi|315107273|gb|EFT79249.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA1]
 gi|315108004|gb|EFT79980.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA2]
 gi|327326814|gb|EGE68597.1| ferredoxin [Propionibacterium acnes HL096PA2]
 gi|327330489|gb|EGE72236.1| ferredoxin [Propionibacterium acnes HL096PA3]
 gi|327442984|gb|EGE89638.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA1]
 gi|327445106|gb|EGE91760.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA2]
 gi|327446920|gb|EGE93574.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA2]
 gi|327450087|gb|EGE96741.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA3]
 gi|327455358|gb|EGF02013.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA2]
 gi|328752501|gb|EGF66117.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL020PA1]
 gi|328752753|gb|EGF66369.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA1]
 gi|328759326|gb|EGF72942.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA2]
 gi|328760188|gb|EGF73761.1| ferredoxin [Propionibacterium acnes HL099PA1]
          Length = 135

 Score = 71.9 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 31  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 90

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
               E +L IN+E+  +  +        P  A   G   K        P   
Sbjct: 91  PGDQEKFLDINAEFFNELGS--------PGGAARLGPTHKDHPAVETLPPQG 134


>gi|269925717|ref|YP_003322340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
 gi|269789377|gb|ACZ41518.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
          Length = 81

 Score = 71.9 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+TE CI  K   CVEVCPVDC Y  +      IHPDECIDCG CEPECPV AI P+
Sbjct: 1  MPYVITEPCIGVKDASCVEVCPVDCIYTDDEAPMYYIHPDECIDCGACEPECPVSAIYPE 60

Query: 59 T--EPGLELWLKINSEYAT 75
                 + +++IN++Y  
Sbjct: 61 DSVPEQWQHYIQINADYFK 79


>gi|297153736|gb|ADI03448.1| ferredoxin [Streptomyces bingchenggensis BCW-1]
          Length = 127

 Score = 71.9 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + CI  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCIDIKDRACVIECPVDCIYEGNRTLYINPAECVDCHACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +  IN+EY  
Sbjct: 61 LPQQWAQYKAINAEYFE 77


>gi|215410806|ref|ZP_03419614.1| ferredoxin fdxC [Mycobacterium tuberculosis 94_M4241A]
 gi|298524675|ref|ZP_07012084.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298494469|gb|EFI29763.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 108

 Score = 71.9 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  + +IN+++  +         S   AAK+   +   +      P  +N 
Sbjct: 61  VPEQWSHYTQINADFFAEL-------GSPGGAAKVGMTENDPQAVKDLAPQSENA 108


>gi|157830233|pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
          Average Structure
          Length = 77

 Score = 71.9 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--E 60
          YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +    
Sbjct: 2  YVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVP 61

Query: 61 PGLELWLKINSEYAT 75
             + +++ N ++  
Sbjct: 62 EEWKSYIQKNRDFFK 76


>gi|15608317|ref|NP_215693.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Rv]
 gi|15840620|ref|NP_335657.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31792371|ref|NP_854864.1| ferredoxin FdxC [Mycobacterium bovis AF2122/97]
 gi|121637109|ref|YP_977332.1| putative ferredoxin fdxC [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148660965|ref|YP_001282488.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Ra]
 gi|167966778|ref|ZP_02549055.1| ferredoxin fdxC [Mycobacterium tuberculosis H37Ra]
 gi|215403016|ref|ZP_03415197.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|215430060|ref|ZP_03427979.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|215445354|ref|ZP_03432106.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|218752871|ref|ZP_03531667.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|219557068|ref|ZP_03536144.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|224989582|ref|YP_002644269.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799779|ref|YP_003032780.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 1435]
 gi|254231445|ref|ZP_04924772.1| ferredoxin fdxC [Mycobacterium tuberculosis C]
 gi|254364080|ref|ZP_04980126.1| ferredoxin fdxC [Mycobacterium tuberculosis str. Haarlem]
 gi|254550183|ref|ZP_05140630.1| ferredoxin fdxC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186110|ref|ZP_05763584.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|260200225|ref|ZP_05767716.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|260204430|ref|ZP_05771921.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289442611|ref|ZP_06432355.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|289446767|ref|ZP_06436511.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|289555034|ref|ZP_06444244.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 605]
 gi|289569181|ref|ZP_06449408.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|289573837|ref|ZP_06454064.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289749720|ref|ZP_06509098.1| LOW QUALITY PROTEIN: ferredoxin fdxC [Mycobacterium tuberculosis
           T92]
 gi|289753247|ref|ZP_06512625.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|289757273|ref|ZP_06516651.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|289761323|ref|ZP_06520701.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|294993365|ref|ZP_06799056.1| ferredoxin fdxC [Mycobacterium tuberculosis 210]
 gi|297633725|ref|ZP_06951505.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 4207]
 gi|297730711|ref|ZP_06959829.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN R506]
 gi|306775348|ref|ZP_07413685.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu001]
 gi|306781745|ref|ZP_07420082.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu002]
 gi|306783896|ref|ZP_07422218.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu003]
 gi|306788262|ref|ZP_07426584.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu004]
 gi|306792587|ref|ZP_07430889.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu005]
 gi|306796993|ref|ZP_07435295.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu006]
 gi|306802871|ref|ZP_07439539.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu008]
 gi|306807053|ref|ZP_07443721.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu007]
 gi|306967258|ref|ZP_07479919.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu009]
 gi|306971442|ref|ZP_07484103.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu010]
 gi|307079169|ref|ZP_07488339.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu011]
 gi|307083730|ref|ZP_07492843.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu012]
 gi|313658042|ref|ZP_07814922.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN V2475]
 gi|2695961|emb|CAA15854.1| PROBABLE FERREDOXIN FDXC [Mycobacterium tuberculosis H37Rv]
 gi|13880802|gb|AAK45471.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31617959|emb|CAD94071.1| PROBABLE FERREDOXIN FDXC [Mycobacterium bovis AF2122/97]
 gi|121492756|emb|CAL71227.1| Probable ferredoxin fdxC [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600504|gb|EAY59514.1| ferredoxin fdxC [Mycobacterium tuberculosis C]
 gi|134149594|gb|EBA41639.1| ferredoxin fdxC [Mycobacterium tuberculosis str. Haarlem]
 gi|148505117|gb|ABQ72926.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Ra]
 gi|224772695|dbj|BAH25501.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321282|gb|ACT25885.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 1435]
 gi|289415530|gb|EFD12770.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|289419725|gb|EFD16926.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|289439666|gb|EFD22159.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 605]
 gi|289538268|gb|EFD42846.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289542935|gb|EFD46583.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|289690307|gb|EFD57736.1| LOW QUALITY PROTEIN: ferredoxin fdxC [Mycobacterium tuberculosis
           T92]
 gi|289693834|gb|EFD61263.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|289708829|gb|EFD72845.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|289712837|gb|EFD76849.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|308216149|gb|EFO75548.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu001]
 gi|308325500|gb|EFP14351.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu002]
 gi|308331334|gb|EFP20185.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu003]
 gi|308335151|gb|EFP24002.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu004]
 gi|308338958|gb|EFP27809.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu005]
 gi|308342625|gb|EFP31476.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu006]
 gi|308346514|gb|EFP35365.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu007]
 gi|308350434|gb|EFP39285.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu008]
 gi|308355081|gb|EFP43932.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu009]
 gi|308359036|gb|EFP47887.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu010]
 gi|308362963|gb|EFP51814.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu011]
 gi|308366614|gb|EFP55465.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu012]
 gi|326902801|gb|EGE49734.1| ferredoxin fdxC [Mycobacterium tuberculosis W-148]
 gi|328459524|gb|AEB04947.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 4207]
          Length = 108

 Score = 71.9 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  + +IN+++  +         S   AAK+   +   +      P  ++ 
Sbjct: 61  VPEQWSHYTQINADFFAEL-------GSPGGAAKVGMTENDPQAVKDLAPQSEDA 108


>gi|183982094|ref|YP_001850385.1| ferredoxin FdxA_1 [Mycobacterium marinum M]
 gi|183175420|gb|ACC40530.1| ferredoxin FdxA_1 [Mycobacterium marinum M]
          Length = 115

 Score = 71.9 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 48/88 (54%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYVIGKPCIDVMDRACVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLP 88
             EL   +    A     +  +   L 
Sbjct: 61 LPQELHPHLADNVAFFTETLPGRDGPLG 88


>gi|116329640|ref|YP_799359.1| hypothetical protein LBL_4106 [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116332526|ref|YP_802243.1| hypothetical protein LBJ_4090 [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116122533|gb|ABJ80426.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116127393|gb|ABJ77485.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 99

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE C  CK+T C  VCPV+ F EG + L I P  CIDC  C PECPV+AI PD E
Sbjct: 1  MAYVVTEPCRNCKYTYCAAVCPVEAFREGADCLYIEPTVCIDCNKCRPECPVEAIYPDYE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESL 87
                 W+  N   A  +P I   K  L
Sbjct: 61 VPSIWRDWVAENVHKAKHFPVIIDVKVPL 89


>gi|111024041|ref|YP_707013.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110823571|gb|ABG98855.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 467

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          MT+VV  +C  CK   CV VCP +C +             L I P  CIDC  C   CP 
Sbjct: 1  MTHVVLGHC--CKDASCVRVCPQNCIHPAPGEAGFESAETLFIDPRSCIDCTACVEACPA 58

Query: 53 DAIKPDTEP--GLELWLKINSEYATQWP 78
           AIKP+         +   N+EY  Q P
Sbjct: 59 SAIKPEWTLTITERPYAARNAEYFEQTP 86


>gi|41408705|ref|NP_961541.1| FdxC_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118465894|ref|YP_880561.1| ferredoxin [Mycobacterium avium 104]
 gi|41397063|gb|AAS04924.1| FdxC_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167181|gb|ABK68078.1| ferredoxin [Mycobacterium avium 104]
          Length = 108

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++  +         S   AAK+ G+ +   +     P   
Sbjct: 61  VPDQWSQYTQINADFFAEL-------GSPGGAAKV-GLTENDPQVVKDLPPQG 105


>gi|108802249|ref|YP_642446.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119871402|ref|YP_941354.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. KMS]
 gi|126438231|ref|YP_001073922.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|108772668|gb|ABG11390.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119697491|gb|ABL94564.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
 gi|126238031|gb|ABO01432.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 115

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1   MTYVIGKACVDVMDRSCVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 61  ---PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                 E      + +            S   AAK+  V+  
Sbjct: 61  LPADQREHLADNAAFFFDTLAGRDEPLGSPGGAAKVGPVQAD 102


>gi|315443225|ref|YP_004076104.1| ferredoxin [Mycobacterium sp. Spyr1]
 gi|315261528|gb|ADT98269.1| ferredoxin [Mycobacterium sp. Spyr1]
          Length = 107

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++  +         S   A+K+       +      P G++
Sbjct: 61  VPDQWSSYTQINADFFAEL-------GSPGGASKVGQTDNDPQAVKDLPPQGED 107


>gi|254818770|ref|ZP_05223771.1| ferredoxin [Mycobacterium intracellulare ATCC 13950]
          Length = 108

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++  +         S   AAK+ G+ +   +     P   
Sbjct: 61  VPDQWSQYTQINADFFAEL-------GSPGGAAKV-GMTENDPQVVKDLPPQG 105


>gi|240171688|ref|ZP_04750347.1| ferredoxin FdxC [Mycobacterium kansasii ATCC 12478]
          Length = 108

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++  +         S   AAK+ G+ +   +     P   
Sbjct: 61  VPDQWTQYTQINADFFDEL-------GSPGGAAKV-GMTEHDPQVVKDLPPQG 105


>gi|145222758|ref|YP_001133436.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium gilvum PYR-GCK]
 gi|145215244|gb|ABP44648.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium gilvum PYR-GCK]
          Length = 107

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++ T+         S   A+K+       +      P G++
Sbjct: 61  VPEQWSAYTQINADFFTEL-------GSPGGASKVGQTDNDPQAVKDLPPQGED 107


>gi|328887041|emb|CCA60280.1| Ferredoxin or Ferredoxin--NADP(+) reductase,actinobacterial
          (eukaryote) type [Streptomyces venezuelae ATCC 10712]
          Length = 552

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 12/81 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEEPDFGTTEMLYIDPKSCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINS 71
          DAI P       L  +  IN+
Sbjct: 59 DAIFPADRLTGRLREYEAINA 79


>gi|21225392|ref|NP_631171.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|9885208|emb|CAC04216.1| ferredoxin [Streptomyces coelicolor A3(2)]
          Length = 129

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDIKDRACVTECPVDCIYEGARTLYINPAECVDCHACEPVCPVEAIFHEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITT-KKESLPSAAKMDGVK 97
                  +L +N+EY  +  + +  +++++     ++ + 
Sbjct: 61  LPRHWAHYLAVNAEYFDEAASPSRARRDAVGDHPAVEALP 100


>gi|295696289|ref|YP_003589527.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          tusciae DSM 2912]
 gi|295411891|gb|ADG06383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          tusciae DSM 2912]
          Length = 78

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +V+T  CI  K  +CVEVCPVD  +EGE+   I PD CIDCG CEP CPV AI  +  
Sbjct: 1  MAFVITSPCIDEKAAECVEVCPVDAIHEGEDQYYIDPDTCIDCGACEPVCPVSAIYQEDF 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +++ N ++  
Sbjct: 61 VPDDQKEFIQKNRDFFK 77


>gi|296120281|ref|YP_003628059.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
 gi|296012621|gb|ADG65860.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
          Length = 84

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT VVTE C  CK   C+ VCP DCF+E    + I+P+ECIDC  C  ECPV AI  +  
Sbjct: 1  MTMVVTEPCRGCKDKACLVVCPCDCFHEDAEMVYINPEECIDCDACVSECPVSAIFHEDN 60

Query: 60 -EPGLELWLKINSEYATQWPN 79
               + ++++N++ +   P 
Sbjct: 61 VPAQWQHFVELNAQRSRVCPP 81


>gi|120401325|ref|YP_951154.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium vanbaalenii PYR-1]
 gi|119954143|gb|ABM11148.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium vanbaalenii PYR-1]
          Length = 117

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI    D
Sbjct: 1  MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPS 89
                 +L+ N+ + T    +  +   L  
Sbjct: 61 LPDEEMEFLEDNAAFFTM--TLAGRDAPLGD 89


>gi|271969626|ref|YP_003343822.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptosporangium roseum DSM 43021]
 gi|270512801|gb|ACZ91079.1| 4Fe-4S ferredoxin iron-sulfur binding domain- containing protein
           [Streptosporangium roseum DSM 43021]
          Length = 108

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                + + K N ++            S   A+K+ G   K     +  P  
Sbjct: 61  LPDQWKDFYKANVDFFEDL-------GSPGGASKV-GKINKDHPVVAVLPPQ 104


>gi|119961114|ref|YP_948508.1| ferredoxin [Arthrobacter aurescens TC1]
 gi|119947973|gb|ABM06884.1| ferredoxin [Arthrobacter aurescens TC1]
          Length = 132

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/111 (42%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           TYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 26  TYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDDT 85

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                 + K N E+            S   AAK+ G   K   Y +  P  
Sbjct: 86  PEEWADYYKANVEFFDDL-------GSPGGAAKI-GNTGKDHPYIAALPPQ 128


>gi|254774193|ref|ZP_05215709.1| ferredoxin [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 108

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++  +         S   AAK+ G+ +   +     P   
Sbjct: 61  VPDQWSQYTQINADFFAEL-------GSPGGAAKV-GLTENDPQVVKDLPPQG 105


>gi|256397063|ref|YP_003118627.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256363289|gb|ACU76786.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 109

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/112 (42%), Positives = 59/112 (52%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+   C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIALPCVDVKDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           T    + + K N E+            S   A+KM G+ +K     S  P  
Sbjct: 61  TPEQWKDYYKANVEFFDDL-------GSPGGASKM-GLIEKDHPLVSVLPPQ 104


>gi|284033401|ref|YP_003383332.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283812694|gb|ADB34533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella
           flavida DSM 17836]
          Length = 108

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDLKDLACVEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           T    + +   N ++            S   A+K+ G   K   + +  P  +
Sbjct: 61  TPEQWKDYYTANVDFFNDL-------GSPGGASKL-GKIDKDHPFIAALPPQE 105


>gi|320450842|ref|YP_004202938.1| conserved domain-containing protein [Thermus scotoductus SA-01]
 gi|320151011|gb|ADW22389.1| conserved domain protein [Thermus scotoductus SA-01]
          Length = 93

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P  D
Sbjct: 5  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIYPEED 64

Query: 59 TEPGLELWLKINSEYATQWPNI 80
               +++++ N  +A   PN+
Sbjct: 65 VPEQWKVYIEKNRTWAQTLPNV 86


>gi|86742537|ref|YP_482937.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86569399|gb|ABD13208.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 107

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +   N+ +  
Sbjct: 61 VPDQWKGYTDTNANFFE 77


>gi|148822393|ref|YP_001287147.1| ferredoxin fdxC [Mycobacterium tuberculosis F11]
 gi|289744922|ref|ZP_06504300.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|148720920|gb|ABR05545.1| ferredoxin fdxC [Mycobacterium tuberculosis F11]
 gi|289685450|gb|EFD52938.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|323720340|gb|EGB29436.1| ferredoxin fdxC [Mycobacterium tuberculosis CDC1551A]
          Length = 126

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 20  TYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDDV 79

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                 + +IN+++  +         S   AAK+   +   +      P  ++ 
Sbjct: 80  PEQWSHYTQINADFFAEL-------GSPGGAAKVGMTENDPQAVKDLAPQSEDA 126


>gi|84494677|ref|ZP_00993796.1| ferredoxin [Janibacter sp. HTCC2649]
 gi|84384170|gb|EAQ00050.1| ferredoxin [Janibacter sp. HTCC2649]
          Length = 109

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/112 (42%), Positives = 58/112 (51%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDLKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           T      + K N E+            S   AAKM G+  K     +  P  
Sbjct: 61  TPEQWADYYKANVEFFDDL-------GSPGGAAKM-GLINKDHPLIADLPPQ 104


>gi|6729719|pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
          Bacillus Schlegelii Fe7s8 Ferredoxin
 gi|6729750|pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
          Bacillus Schlegelii Fe7s8 Ferredoxin
          Length = 77

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +   
Sbjct: 1  AYVITEPCIGTKCASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFV 60

Query: 60 EPGLELWLKINSEYAT 75
              + +++ N ++  
Sbjct: 61 PEEWKSYIQKNRDFFK 76


>gi|313836966|gb|EFS74680.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA2]
 gi|314929443|gb|EFS93274.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL044PA1]
 gi|314971472|gb|EFT15570.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA3]
          Length = 135

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 31  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 90

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
               E +L IN+E+  +  +        P  A   G   K        P   
Sbjct: 91  PGDQEKFLDINAEFFNELGS--------PGGAARLGPTHKDHPAVEALPPQG 134


>gi|256783588|ref|ZP_05522019.1| ferredoxin [Streptomyces lividans TK24]
 gi|289767469|ref|ZP_06526847.1| ferredoxin [Streptomyces lividans TK24]
 gi|289697668|gb|EFD65097.1| ferredoxin [Streptomyces lividans TK24]
          Length = 129

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDIKDRACVTECPVDCIYEGARTLYINPAECVDCHACEPVCPVEAIFHEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITT-KKESLPSAAKMDGVK 97
                  +L +N+EY  +  + +  ++++      +D + 
Sbjct: 61  LPRHWAHYLAVNAEYFDEAASPSRARRDTAGDHPAVDALP 100


>gi|111225470|ref|YP_716264.1| ferredoxin [Frankia alni ACN14a]
 gi|111153002|emb|CAJ64749.1| Ferredoxin [Frankia alni ACN14a]
          Length = 107

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +   N+ +  
Sbjct: 61 VPDQWKGYTDTNANFFE 77


>gi|15807321|ref|NP_296051.1| ferredoxin [Deinococcus radiodurans R1]
 gi|6460141|gb|AAF11876.1|AE002064_7 ferredoxin [Deinococcus radiodurans R1]
          Length = 123

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +V+T  CI  K   C EVCPV+C YEG     IHPDECIDCG C P CPV AI P  D
Sbjct: 46  MPHVITSPCIGVKDQACTEVCPVECIYEGGEQFFIHPDECIDCGACVPACPVSAIFPEED 105

Query: 59  TEPGLELWLKINSEYA 74
              G + ++  NS + 
Sbjct: 106 VPDGEQDFIVKNSAHF 121


>gi|152965106|ref|YP_001360890.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
 gi|151359623|gb|ABS02626.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 136

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ + C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +   
Sbjct: 30  TYVIAQPCVDVKDKACIEECPVDCIYEGNRSLYIQPDECVDCGACEPVCPVEAIYYEDDV 89

Query: 60  EPGLELWLKINSEYAT 75
                 +   N E+  
Sbjct: 90  PEQWSAFTAANVEFFD 105


>gi|226228428|ref|YP_002762534.1| ferredoxin [Gemmatimonas aurantiaca T-27]
 gi|226091619|dbj|BAH40064.1| ferredoxin [Gemmatimonas aurantiaca T-27]
          Length = 87

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M YV+TE CI  K   CV+VCPVDC YEGE+ L I+PDECIDCG CEPECPV AI P  D
Sbjct: 1  MPYVITEACISVKDRSCVDVCPVDCIYEGEDQLYINPDECIDCGACEPECPVTAIFPEED 60

Query: 59 TEPGLELWLKINSEYAT 75
              L  ++  N +   
Sbjct: 61 VPTQLRSFIAKNKDVFE 77


>gi|118469543|ref|YP_889369.1| ferredoxin [Mycobacterium smegmatis str. MC2 155]
 gi|118170830|gb|ABK71726.1| ferredoxin [Mycobacterium smegmatis str. MC2 155]
          Length = 107

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + + N+++  +         S   A+K+       +      P G++
Sbjct: 61  VPDQWSSYAQANADFFAEL-------GSPGGASKVGQTDNDPQAIKDLPPQGED 107


>gi|183984247|ref|YP_001852538.1| ferredoxin FdxC [Mycobacterium marinum M]
 gi|183177573|gb|ACC42683.1| ferredoxin FdxC [Mycobacterium marinum M]
          Length = 108

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++  +         S   AAK+ G+ +   +     P   
Sbjct: 61  VPEQWSQYTQINADFFAEL-------GSPGGAAKV-GMTENDPQVVKDLPPQG 105


>gi|256825753|ref|YP_003149713.1| ferredoxin [Kytococcus sedentarius DSM 20547]
 gi|256689146|gb|ACV06948.1| ferredoxin [Kytococcus sedentarius DSM 20547]
          Length = 107

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDKACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  +   N ++            S   AAKM G+  K     S  P   + 
Sbjct: 61  LPEEWADYYTANVDFFDDL-------GSPGGAAKM-GMIPKDHPLISALPPQGDA 107


>gi|324997878|ref|ZP_08118990.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia sp. P1]
          Length = 104

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YVVTE CI  +   C+E CPVDC Y G+  + IHPDEC+DCG C P CP +AI  +  
Sbjct: 1  MAYVVTEACIDVQDRACMEECPVDCIYPGDRMMYIHPDECVDCGKCMPACPSEAIHWEYK 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
                 +++ N+ +          +++ P     
Sbjct: 61 VPAEQAAFVEANAVFVRSHGLTGGGEDADPVGEDH 95


>gi|269793446|ref|YP_003312901.1| ferredoxin [Sanguibacter keddieii DSM 10542]
 gi|269095631|gb|ACZ20067.1| ferredoxin [Sanguibacter keddieii DSM 10542]
          Length = 108

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  + K N E+            S   AAKM G   K        P G
Sbjct: 61  VPDEWSEYYKANVEFFDDL-------GSPGGAAKM-GEIDKDHAVILALPAG 104


>gi|315606086|ref|ZP_07881117.1| ferredoxin [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312368|gb|EFU60454.1| ferredoxin [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 113

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGERTLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  +L+ N+++  Q  +        P  A+  GV+   +   +  P  
Sbjct: 61  LPDEWSDYLRANADFFNQLGS--------PGGAQKTGVQDYDDPMIAELPPQ 104


>gi|323704847|ref|ZP_08116424.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535773|gb|EGB25547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 372

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C  C    C++ CP D     +    I P++CI CG C   C  DAI P     ++
Sbjct: 191 VGKKCTAC--QTCIKNCPEDAISLVDGKAYIDPEKCIGCGECITMCQYDAINPQWGTDMD 248

Query: 65  LWLKINSEYA 74
            +++  +EYA
Sbjct: 249 EFVERMTEYA 258


>gi|118462886|ref|YP_881360.1| ferredoxin [Mycobacterium avium 104]
 gi|254774861|ref|ZP_05216377.1| ferredoxin [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118164173|gb|ABK65070.1| ferredoxin [Mycobacterium avium 104]
          Length = 108

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  +  
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
            P    +L+IN+++ T
Sbjct: 61 LPPEHSQYLQINADFFT 77


>gi|313791594|gb|EFS39712.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA1]
          Length = 144

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 40  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 99

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
               E +L IN+E+  +  +        P  A   G   K        P   
Sbjct: 100 PGDQEKFLDINAEFFNELGS--------PGGAARLGPTHKDHPAVETLPPQG 143


>gi|255326955|ref|ZP_05368031.1| ferredoxin [Rothia mucilaginosa ATCC 25296]
 gi|283457664|ref|YP_003362249.1| ferredoxin [Rothia mucilaginosa DY-18]
 gi|255296172|gb|EET75513.1| ferredoxin [Rothia mucilaginosa ATCC 25296]
 gi|283133664|dbj|BAI64429.1| ferredoxin [Rothia mucilaginosa DY-18]
          Length = 106

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACVEECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  ++  N+++            S   AAK+ G   K   + +  P   
Sbjct: 61  VPEEWSEYVSANADFFDDL-------GSPGGAAKL-GPTGKDVPFIAALPPRG 105


>gi|258593114|emb|CBE69425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein (modular
          protein) [NC10 bacterium 'Dutch sediment']
          Length = 113

 Score = 70.8 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M YVV + CI  K   CV+VCPV+CFYEGE  L IHP+ECIDC  CEPECPV AI     
Sbjct: 1  MAYVVADPCIGTKDHACVDVCPVECFYEGEELLFIHPEECIDCAACEPECPVAAIFEASQ 60

Query: 59 TEPGLELWLKINSE 72
               + ++++N++
Sbjct: 61 VPEQWQHFIQMNAD 74


>gi|184200470|ref|YP_001854677.1| ferredoxin [Kocuria rhizophila DC2201]
 gi|183580700|dbj|BAG29171.1| 7Fe ferredoxin [Kocuria rhizophila DC2201]
          Length = 107

 Score = 70.4 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/112 (42%), Positives = 57/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACVEECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           T      + K N E+            S   AAK+ G   K     +  P  
Sbjct: 61  TPEEWAEYYKANVEFFDDL-------GSPGGAAKL-GNTHKDHPLIAALPPQ 104


>gi|41408137|ref|NP_960973.1| FdxC_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396492|gb|AAS04356.1| FdxC_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 108

 Score = 70.4 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  +  
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
            P    +L+IN+++ T
Sbjct: 61 LPPEHSQYLQINADFFT 77


>gi|311743743|ref|ZP_07717549.1| ferredoxin [Aeromicrobium marinum DSM 15272]
 gi|311312873|gb|EFQ82784.1| ferredoxin [Aeromicrobium marinum DSM 15272]
          Length = 107

 Score = 70.4 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 5/101 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ + C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1   MTYVIAQPCVDLKDRACVDECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              E      +EY     +   K  S   AAK+  V   + 
Sbjct: 61  TPAEW-----AEYYDANVHFFDKLGSPGGAAKLGVVDDDHP 96


>gi|108805583|ref|YP_645520.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108766826|gb|ABG05708.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 79

 Score = 70.4 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+TE CI  K   CVEVCPVDC Y+G     I+P+ECIDCG CEPECPV+AI P+ E
Sbjct: 1  MTYVITEPCIGTKDQSCVEVCPVDCIYDGGEHFMINPEECIDCGACEPECPVEAIYPEDE 60

Query: 61 --PGLELWLKINSEYA 74
              ++ ++    E+ 
Sbjct: 61 VPEDMQQYITKAQEFF 76


>gi|311742320|ref|ZP_07716129.1| ferredoxin--NADP(+) reductase C-terminal domain protein
          [Aeromicrobium marinum DSM 15272]
 gi|311313948|gb|EFQ83856.1| ferredoxin--NADP(+) reductase C-terminal domain protein
          [Aeromicrobium marinum DSM 15272]
          Length = 559

 Score = 70.4 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 14/100 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT +C  C    C   CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTRSC--CADASCTFACPVNCIHPTPDEPDFGTAEMLYIDPVSCVDCGACVRACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           AI P T+       +L+IN+  A   P  +   ++   A
Sbjct: 59 GAIVPHTKLGEHELPFLEINA--AFHNPPRSYPPQAPVPA 96


>gi|260906738|ref|ZP_05915060.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
          BL2]
          Length = 110

 Score = 70.4 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + CI  K   CV+ CPVDC YEGE  L IHPDECIDCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCIDVKDKSCVDECPVDCIYEGERSLYIHPDECIDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N ++  
Sbjct: 61 VPEEWADYYTYNVDFFD 77


>gi|312194598|ref|YP_004014659.1| ferredoxin [Frankia sp. EuI1c]
 gi|311225934|gb|ADP78789.1| ferredoxin [Frankia sp. EuI1c]
          Length = 107

 Score = 70.4 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +   N+ +  
Sbjct: 61 VPEQWKPYTDTNASFFE 77


>gi|314925701|gb|EFS89532.1| putative ferredoxin [Propionibacterium acnes HL036PA3]
          Length = 106

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+A+  +  
Sbjct: 1  MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAVYYEDD 60

Query: 60 -EPGLELWLKINSEYA 74
               E +L IN+E+ 
Sbjct: 61 LPGDQEKFLDINAEFF 76


>gi|15827784|ref|NP_302047.1| ferredoxin [Mycobacterium leprae TN]
 gi|221230261|ref|YP_002503677.1| ferredoxin [Mycobacterium leprae Br4923]
 gi|13093336|emb|CAC30439.1| ferredoxin [Mycobacterium leprae]
 gi|219933368|emb|CAR71583.1| ferredoxin [Mycobacterium leprae Br4923]
          Length = 108

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYA 74
                 + +IN ++ 
Sbjct: 61 VPEQWSHYTQINVDFF 76


>gi|296169415|ref|ZP_06851037.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895917|gb|EFG75610.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 108

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++         +  S   AAK+ G+ +   +     P   
Sbjct: 61  VPEQWSQYTQINADFF-------VELGSPGGAAKV-GMTENDPQVVKDLPPQG 105


>gi|254818693|ref|ZP_05223694.1| FdxC_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 108

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  + +
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIFYEDD 60

Query: 61 PGLEL--WLKINSEYAT 75
             E   +L+IN+++  
Sbjct: 61 LPDEHSGYLQINADFFA 77


>gi|297564742|ref|YP_003683714.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849191|gb|ADH62206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 83

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP- 57
          M YV+ E CI  K   C  VCP +       +  L I PD CI  G+C   CPV AI P 
Sbjct: 1  MAYVIAEPCIGHKDLSCTVVCPTEAIGGRPSDPQLYIDPDLCIHYGLCASVCPVGAIFPQ 60

Query: 58 -DTEPGLELWLKINSEYATQW 77
           D       + + N +Y  +W
Sbjct: 61 EDLPEAWAAYAEGNRDYFRRW 81


>gi|289640678|ref|ZP_06472850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia
          symbiont of Datisca glomerata]
 gi|289509567|gb|EFD30494.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia
          symbiont of Datisca glomerata]
          Length = 107

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +   N+ +  
Sbjct: 61 VPDQWKGFADSNALFFE 77


>gi|218781349|ref|YP_002432667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762733|gb|ACL05199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 369

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C +VCPV      +    I    CI CG C   CP  AI PD    +
Sbjct: 190 VNKEKCTGC--GSCEDVCPVGAAKLEDEISIIDAKVCIGCGECMTVCPEKAINPDWATDI 247

Query: 64  ELWLKINSEYA 74
             +++  +EYA
Sbjct: 248 GAFMERMTEYA 258


>gi|46205236|ref|ZP_00209759.1| COG1146: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 92

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/64 (81%), Positives = 56/64 (87%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          +NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE  LE W
Sbjct: 1  DNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTEGNLESW 60

Query: 67 LKIN 70
          LK+N
Sbjct: 61 LKLN 64


>gi|254774707|ref|ZP_05216223.1| ferredoxin FdxA_1 [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 117

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYVIGKPCVDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSE-YATQWPNITTKKESLPSAAK 92
              L+ +   N+  ++           S   AAK
Sbjct: 61 LPEELQPYQADNAAFFSETLQGRDEPLGSPGGAAK 95


>gi|227874543|ref|ZP_03992706.1| possible ferredoxin [Mobiluncus mulieris ATCC 35243]
 gi|269977657|ref|ZP_06184624.1| ferredoxin [Mobiluncus mulieris 28-1]
 gi|306817830|ref|ZP_07451569.1| ferredoxin [Mobiluncus mulieris ATCC 35239]
 gi|307701395|ref|ZP_07638415.1| ferredoxin [Mobiluncus mulieris FB024-16]
 gi|227844752|gb|EEJ54898.1| possible ferredoxin [Mobiluncus mulieris ATCC 35243]
 gi|269934260|gb|EEZ90827.1| ferredoxin [Mobiluncus mulieris 28-1]
 gi|304649309|gb|EFM46595.1| ferredoxin [Mobiluncus mulieris ATCC 35239]
 gi|307613410|gb|EFN92659.1| ferredoxin [Mobiluncus mulieris FB024-16]
          Length = 106

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEG   L I+P EC+DCG CE  CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGARTLYINPLECVDCGACEAVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E +L+ N ++            +   A+    V  K +   +  P
Sbjct: 61  LPAEWEDYLRANRDFFDD-------IGTPGGASSYGPV-DKDDPMIAALP 102


>gi|320449419|ref|YP_004201515.1| ferredoxin-1 [Thermus scotoductus SA-01]
 gi|320149588|gb|ADW20966.1| ferredoxin-1 [Thermus scotoductus SA-01]
          Length = 79

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + +++ N + A
Sbjct: 61 VPEQWKSYIEKNRKLA 76


>gi|121599359|ref|YP_993807.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|226197927|ref|ZP_03793501.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|121228169|gb|ABM50687.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|225930115|gb|EEH26128.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
          Length = 85

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYATQWPNI 80
           +DCF EG NFLAI PDECIDC VC  ECP +AI    D     + +  +N+E A  WP+I
Sbjct: 1   MDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEEDVPGDQQHFTALNAELAKDWPSI 60

Query: 81  TTKKESLPSAAKMDGVKQKYEKY 103
           T  K +   A +   V++K    
Sbjct: 61  TKTKPAPADADEWKDVQEKLHLL 83


>gi|116669636|ref|YP_830569.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arthrobacter sp. FB24]
 gi|116609745|gb|ABK02469.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Arthrobacter sp. FB24]
          Length = 106

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C++ CPVDC YEGE  L IHP EC+DCG C+P CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIDECPVDCIYEGERSLYIHPSECVDCGACDPVCPVEAIYYSDD 60

Query: 59 TEPGLELWLKINSEYAT 75
                 +++ N E+  
Sbjct: 61 VPDEWADYIRANVEFFE 77


>gi|320450822|ref|YP_004202918.1| ferredoxin-1 [Thermus scotoductus SA-01]
 gi|320150991|gb|ADW22369.1| ferredoxin-1 [Thermus scotoductus SA-01]
          Length = 90

 Score = 70.4 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P  D
Sbjct: 5  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIFPEED 64

Query: 59 TEPGLELWLKINSEYATQWPNI 80
                 +++ N ++A   PN+
Sbjct: 65 VPEPWREYIEKNRQWARTLPNV 86


>gi|326384561|ref|ZP_08206240.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326196695|gb|EGD53890.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 116

 Score = 70.0 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPVDAI  +  
Sbjct: 1  MTYVIALPCVDVMDRACVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVDAIFYEDD 60

Query: 60 -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAK 92
                 +   N+++  T  P       S   AAK
Sbjct: 61 LPDEWTPYTTDNADFFVTTLPGRDAPLGSPGGAAK 95


>gi|269837836|ref|YP_003320064.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Sphaerobacter thermophilus DSM 20745]
 gi|269787099|gb|ACZ39242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sphaerobacter thermophilus DSM 20745]
          Length = 80

 Score = 70.0 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYV+ + CI  K   CVEVCPVDC +  +      I+PDECIDCGVC   CPV+AI  +
Sbjct: 1  MTYVIAQPCIGLKDASCVEVCPVDCIHSDDEAEQYFINPDECIDCGVCAEVCPVEAIFFE 60

Query: 59 T--EPGLELWLKINSEYAT 75
                   +L+IN EY  
Sbjct: 61 DDLPEQWADFLRINREYFQ 79


>gi|258514612|ref|YP_003190834.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778317|gb|ACV62211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 368

 Score = 70.0 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C    C EVCP       E    I  D+CI CG C   CPV A   D +  L
Sbjct: 190 VDEDKCIGC--GGCSEVCPEQAITMSEMKANIDLDKCIGCGECLTVCPVKANGIDWQTDL 247

Query: 64  ELWLKINSEY 73
           E +L+  +EY
Sbjct: 248 EAFLERMAEY 257



 Score = 33.8 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    + +  D+CI CG C   CP  AI  
Sbjct: 183 QHGTKIVVDEDKCIGCGGCSEVCPEQAITM 212


>gi|159039669|ref|YP_001538922.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Salinispora arenicola CNS-205]
 gi|157918504|gb|ABV99931.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Salinispora
           arenicola CNS-205]
          Length = 108

 Score = 70.0 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + +   N E+            S   A+K+  V+ K   + +  P   
Sbjct: 61  VPEQWKDYTAANYEFFEDL-------GSPGGASKIGKVE-KDATFVAAQPPRG 105


>gi|288920898|ref|ZP_06415194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
 gi|288347730|gb|EFC82011.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
          Length = 107

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               +++   N+ +  
Sbjct: 61 VPEQWKVYADNNATFFE 77


>gi|304317899|ref|YP_003853044.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779401|gb|ADL69960.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 372

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V +NC  C    C++ CP D     +    I PD+CI CG C   C  DAIKP     ++
Sbjct: 191 VGKNCTAC--QTCIKNCPEDAITLVDGKAYIDPDKCIGCGECITMCQYDAIKPQWGTDMD 248

Query: 65  LWLKINSEYA 74
            +++  +EYA
Sbjct: 249 EFVERMTEYA 258


>gi|168700895|ref|ZP_02733172.1| ferredoxin [Gemmata obscuriglobus UQM 2246]
          Length = 92

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          M +VVT  C+ C++TDCV VCP++CFY  E  L I PD+CIDCG C PECPV+AI    D
Sbjct: 1  MAHVVTAPCVGCRYTDCVVVCPMECFYGDERQLYIDPDDCIDCGACAPECPVEAIFLDGD 60

Query: 59 TEPGLELWLKINSE 72
                 ++ +N++
Sbjct: 61 VPAKWSDFVPLNAD 74


>gi|297626788|ref|YP_003688551.1| Ferredoxin [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
 gi|296922553|emb|CBL57126.1| Ferredoxin [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
          Length = 106

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIALPCVDVKDKACVEECPVDCIYEGERTLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYA 74
               + W  +N+ + 
Sbjct: 61 LPDEYKEWYDVNANFF 76


>gi|302536699|ref|ZP_07289041.1| ferredoxin [Streptomyces sp. C]
 gi|302445594|gb|EFL17410.1| ferredoxin [Streptomyces sp. C]
          Length = 110

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|284033073|ref|YP_003383004.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283812366|gb|ADB34205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella
           flavida DSM 17836]
          Length = 499

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 14/106 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
           MTYV+  +C  C    CV  CP++C +           + L I P  CIDCG C   CPV
Sbjct: 1   MTYVIAGDC--CADARCVSACPMNCIHPSPGEPGFGTTDGLFIDPRTCIDCGACAEVCPV 58

Query: 53  DAIKPDTEPGLELWLKINSEYATQWPNITTKK-ES--LPSAAKMDG 95
           DA +P  +      + +N+ Y  + P +     ++   P   +  G
Sbjct: 59  DAAQPADKAAPID-VALNAAYFAERPAVDALDLDAWEPPRFDRWTG 103


>gi|302869764|ref|YP_003838401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315503754|ref|YP_004082641.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora sp. L5]
 gi|330469998|ref|YP_004407741.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|302572623|gb|ADL48825.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315410373|gb|ADU08490.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora sp. L5]
 gi|328812969|gb|AEB47141.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Verrucosispora maris AB-18-032]
          Length = 108

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + +   N E+            S   A+K+  V+ K   + +  P   
Sbjct: 61  VPEQWKDYTGANYEFFEDL-------GSPGGASKIGKVE-KDATFVAAQPPRG 105


>gi|269795884|ref|YP_003315339.1| ferredoxin [Sanguibacter keddieii DSM 10542]
 gi|269098069|gb|ACZ22505.1| ferredoxin [Sanguibacter keddieii DSM 10542]
          Length = 105

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  + K N E+            S   AAKM G   K        P  
Sbjct: 61  VPDEWSEYYKANVEFFDDL-------GSPGGAAKM-GEIDKDHAVILALPPQ 104


>gi|291294431|ref|YP_003505829.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus ruber DSM 1279]
 gi|290469390|gb|ADD26809.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          ruber DSM 1279]
          Length = 79

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVIVEPCIGTKDKSCVEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + ++  N + A
Sbjct: 61 VPEQWQDYIAKNRKLA 76


>gi|254381842|ref|ZP_04997205.1| ferredoxin [Streptomyces sp. Mg1]
 gi|194340750|gb|EDX21716.1| ferredoxin [Streptomyces sp. Mg1]
          Length = 108

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|108800994|ref|YP_641191.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119870135|ref|YP_940087.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. KMS]
 gi|126436831|ref|YP_001072522.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|108771413|gb|ABG10135.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119696224|gb|ABL93297.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
 gi|126236631|gb|ABO00032.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 107

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + + N+++  +         S   A+K+       +      P G++
Sbjct: 61  VPDQWSAYTQYNADFFAEL-------GSPGGASKVGQTDNDPQAVKDLPPQGED 107


>gi|298248993|ref|ZP_06972797.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|298250987|ref|ZP_06974791.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297546997|gb|EFH80864.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297548991|gb|EFH82858.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 86

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          MTYV+T+ C+  K   CV+VCPVDC +        E    L I+PDECIDCG CEP CPV
Sbjct: 1  MTYVITQPCVGVKDASCVDVCPVDCIHPTQSEAGFESSEQLYINPDECIDCGACEPVCPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEYAT 75
           AI  ++        ++KIN+++  
Sbjct: 61 TAIFEESAVPEEWNQYIKINADFFK 85


>gi|226366514|ref|YP_002784297.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226245004|dbj|BAH55352.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 107

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+      C+E CPVDC YEG   + IHPDEC+DCG CEP CPV+AI  D  
Sbjct: 1  MPYVIAEPCVDVLDKACIEECPVDCIYEGGRMMYIHPDECVDCGACEPVCPVEAIFFDDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 ++  N+E+  
Sbjct: 61 LPDQWSGYVSSNAEFFD 77


>gi|114776699|ref|ZP_01451742.1| Ferredoxin [Mariprofundus ferrooxydans PV-1]
 gi|114552785|gb|EAU55216.1| Ferredoxin [Mariprofundus ferrooxydans PV-1]
          Length = 114

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/113 (42%), Positives = 60/113 (53%), Gaps = 14/113 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD 53
           M +VVT+ C  C  T CV VCPVDCFY       E  N L I P+ECIDC VCEPECP +
Sbjct: 1   MAFVVTQLCKDCVDTACVAVCPVDCFYQPKDISAETPNMLYISPEECIDCAVCEPECPWE 60

Query: 54  AIKP--DTEPGLELWLKINSEYATQWPNITT----KKESLPSAAKMDGVKQKY 100
           AI P  D     E  + +N E +    ++      K  + PSA ++   K KY
Sbjct: 61  AIYPEEDVPDVFEDDIALN-ELSDTERDLFELAEVKDHTPPSADEVAANKAKY 112


>gi|134097606|ref|YP_001103267.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008475|ref|ZP_06566448.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|120023|sp|P24496|FER_SACER RecName: Full=Ferredoxin
 gi|1223836|gb|AAA92023.1| ferredoxin [Saccharopolyspora erythraea]
 gi|133910229|emb|CAM00342.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 106

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + K N ++  +         S   AAK+  V +  E   S  P G+
Sbjct: 61  VPDEWAAYTKANVDFFDEL-------GSPGGAAKVGKVDRDVEPVSSLPPQGE 106


>gi|294631226|ref|ZP_06709786.1| ferredoxin [Streptomyces sp. e14]
 gi|292834559|gb|EFF92908.1| ferredoxin [Streptomyces sp. e14]
          Length = 143

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 39  TYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDDV 98

Query: 60  EPGLELWLKINSEYAT 75
               + + K N E+  
Sbjct: 99  PEEWKDYYKANVEFFD 114


>gi|86743147|ref|YP_483547.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86570009|gb|ABD13818.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 111

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT+VV   CI  K T CVE CPVDC YEG   L I+PDECIDCG C   CPVDAIK    
Sbjct: 1  MTFVVLSPCIDVKDTACVEECPVDCIYEGSRKLYINPDECIDCGACASVCPVDAIKSTRI 60

Query: 59 TEPGLELWLKINSEYA-TQWPNITTKKESLPSAAK 92
                 ++   + +     P       +   A K
Sbjct: 61 VPASEAEFIADEARFFTDILPGRDAPIGNPGGAGK 95


>gi|320094299|ref|ZP_08026090.1| ferredoxin [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978765|gb|EFW10317.1| ferredoxin [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 114

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 15/113 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYA--------TQWPNITTKKES-----LPSAAKMDGVKQ 98
                  +L+ N+++          Q   +    +       P   +      
Sbjct: 61  LPDEWSDYLRANADFFSELGSPGGAQRTGVQEYDDPMIAALPPQNEEWKAENG 113


>gi|29829671|ref|NP_824305.1| ferredoxin [Streptomyces avermitilis MA-4680]
 gi|29606780|dbj|BAC70840.1| putative ferredoxin [Streptomyces avermitilis MA-4680]
          Length = 106

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|218294618|ref|ZP_03495472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
          aquaticus Y51MC23]
 gi|218244526|gb|EED11050.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
          aquaticus Y51MC23]
          Length = 79

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + +++ N + A
Sbjct: 61 VPEQWKSYIEKNRKLA 76


>gi|41410450|emb|CAE51194.1| putative ferredoxin [Thermus thermophilus]
          Length = 87

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIYPEED 60

Query: 59 TEPGLELWLKINSEYATQWPNI 80
                ++++ N  +A   PN+
Sbjct: 61 VPEQWRIYIEKNRTWAQTLPNV 82


>gi|94984884|ref|YP_604248.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
          DSM 11300]
 gi|94555165|gb|ABF45079.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
          geothermalis DSM 11300]
          Length = 78

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFVIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
             G E ++  N  + 
Sbjct: 61 VPAGEEEFIFKNRAFF 76


>gi|46200111|ref|YP_005778.1| ferredoxin [Thermus thermophilus HB27]
 gi|55980146|ref|YP_143443.1| ferredoxin [Thermus thermophilus HB8]
 gi|62288089|sp|P03942|FER_THET8 RecName: Full=Ferredoxin
 gi|46197739|gb|AAS82151.1| ferredoxin [Thermus thermophilus HB27]
 gi|55771559|dbj|BAD70000.1| ferredoxin [Thermus thermophilus HB8]
          Length = 79

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + +++ N + A
Sbjct: 61 VPEQWKSYIEKNRKLA 76


>gi|182436183|ref|YP_001823902.1| putative ferredoxin [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|239944071|ref|ZP_04696008.1| putative ferredoxin [Streptomyces roseosporus NRRL 15998]
 gi|239990523|ref|ZP_04711187.1| putative ferredoxin [Streptomyces roseosporus NRRL 11379]
 gi|291447539|ref|ZP_06586929.1| 4Fe-4S binding domain containing protein [Streptomyces
          roseosporus NRRL 15998]
 gi|326776809|ref|ZP_08236074.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Streptomyces cf. griseus XylebKG-1]
 gi|178464699|dbj|BAG19219.1| putative ferredoxin [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|291350486|gb|EFE77390.1| 4Fe-4S binding domain containing protein [Streptomyces
          roseosporus NRRL 15998]
 gi|326657142|gb|EGE41988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Streptomyces cf. griseus XylebKG-1]
          Length = 106

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|218288541|ref|ZP_03492818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|258511869|ref|YP_003185303.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
 gi|218241198|gb|EED08373.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|257478595|gb|ACV58914.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
          Length = 79

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +V+T  CI  K  DCVE CPVD  +EG +   I PD CIDC  CEP CPV+AI  +  
Sbjct: 1  MPFVITSPCIGEKAADCVETCPVDAIHEGPDQYYIDPDLCIDCAACEPVCPVNAIYQEEF 60

Query: 60 -EPGLELWLKINSEYATQ 76
               + +++ N  +   
Sbjct: 61 VPEDEKEFIEKNRNFFRN 78


>gi|296128848|ref|YP_003636098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Cellulomonas flavigena DSM 20109]
 gi|296020663|gb|ADG73899.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Cellulomonas flavigena DSM 20109]
          Length = 108

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 + + N  +  +         S   AAKM  +
Sbjct: 61 VPEQWSQYYEANVHFFDE-------IGSPGGAAKMGEI 91


>gi|261252043|ref|ZP_05944617.1| ferredoxin [Vibrio orientalis CIP 102891]
 gi|260938916|gb|EEX94904.1| ferredoxin [Vibrio orientalis CIP 102891]
          Length = 75

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C  EC   AI  + E      L++++N+E A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVDECDAHAIFQEDEVPDDQTLFIELNAELAELWPVQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  EKWNGVPDKL 70


>gi|159896706|ref|YP_001542953.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889745|gb|ABX02825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Herpetosiphon aurantiacus ATCC 23779]
          Length = 77

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K + CV+VCPVDC YEGE+   I+PDECIDCG CEPECPV AI     
Sbjct: 1  MAYVIAEPCVGTKDSACVKVCPVDCIYEGEDQYYINPDECIDCGACEPECPVSAIFSSDS 60

Query: 60 -EPGLELWLKINSEYA 74
                 + + N ++ 
Sbjct: 61 VPEQWASYTQKNVDFF 76


>gi|296166244|ref|ZP_06848683.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898428|gb|EFG77995.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 108

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ E C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV++I  + +
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 61 PGLE--LWLKINSEYAT 75
             E   + + N+++  
Sbjct: 61 LPAEYSQYTQFNADFFA 77


>gi|329939592|ref|ZP_08288893.1| ferredoxin [Streptomyces griseoaurantiacus M045]
 gi|329301162|gb|EGG45057.1| ferredoxin [Streptomyces griseoaurantiacus M045]
          Length = 106

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|297562832|ref|YP_003681806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847280|gb|ADH69300.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 106

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  + K N ++            S   A+K+ G   +     +  P  
Sbjct: 61  LPEQWSDFYKANVDFFDDL-------GSPGGASKV-GKIDRDHPLVAKLPPQ 104


>gi|254822186|ref|ZP_05227187.1| ferredoxin FdxA_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 117

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYVIGKPCVDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSE-YATQWPNITTKKESLPSAAK 92
              L+ +   N+  ++           S   AAK
Sbjct: 61 LPEELQPYQADNAAFFSETLEGRDGPLGSPGGAAK 95


>gi|317125728|ref|YP_004099840.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Intrasporangium calvum DSM 43043]
 gi|315589816|gb|ADU49113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Intrasporangium calvum DSM 43043]
          Length = 108

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 9/110 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGIRTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  +   N E+            S   AAKM  +++ +    +  P
Sbjct: 61  VPEQWADYYNANVEFFDDL-------GSPGGAAKMGQIQKDHPLILALPP 103


>gi|86741719|ref|YP_482119.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86568581|gb|ABD12390.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 111

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +V+T  CI  K   C+E CP DC YEG+  + I+PDEC +CG C   CPV A   D  
Sbjct: 1   MPFVITAACIDVKDGSCLEGCPADCIYEGDRKMYINPDECTECGACAVSCPVGAAISDDR 60

Query: 60  -EPGLELWLKINS-EYATQWPNITTKKESLPSAAKMDGVKQK 99
                + +++  +  ++   P           A K+  +K  
Sbjct: 61  VPAKDKEFIESEALFFSAVLPGRDAPLGEPGGATKLGKIKAD 102


>gi|239918039|ref|YP_002957597.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|281415782|ref|ZP_06247524.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|289705240|ref|ZP_06501639.1| putative ferredoxin [Micrococcus luteus SK58]
 gi|239839246|gb|ACS31043.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|289557990|gb|EFD51282.1| putative ferredoxin [Micrococcus luteus SK58]
          Length = 108

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/110 (42%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIALPCVDVKDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T      + K N E+            S   AAK+ G+  K     S  P
Sbjct: 61  TPDEWAEYYKANVEFFDDL-------GSPGGAAKL-GMIAKDHPIISALP 102


>gi|311898212|dbj|BAJ30620.1| putative 7Fe ferredoxin [Kitasatospora setae KM-6054]
          Length = 108

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|256832039|ref|YP_003160766.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Jonesia denitrificans DSM 20603]
 gi|256685570|gb|ACV08463.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Jonesia
           denitrificans DSM 20603]
          Length = 105

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAKPCVDVKDKACIEECPVDCIYEGNRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  + + N E+            S   AAKM G   K        P  
Sbjct: 61  VPEEWSEFYQANVEFFDDL-------GSPGGAAKM-GQIDKDHAIVEALPPQ 104


>gi|326381449|ref|ZP_08203143.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326199696|gb|EGD56876.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 108

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ E C+      CVE CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAEPCVDVLDRACVEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E ++  N ++  
Sbjct: 61 VPDEWEPYVSANVDFFE 77


>gi|320008744|gb|ADW03594.1| putative ferredoxin [Streptomyces flavogriseus ATCC 33331]
          Length = 106

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|118618608|ref|YP_906940.1| ferredoxin FdxA_1 [Mycobacterium ulcerans Agy99]
 gi|118570718|gb|ABL05469.1| ferredoxin FdxA_1 [Mycobacterium ulcerans Agy99]
          Length = 115

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 47/88 (53%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + CI      CVE CPVDC YEG   L IHPDE +DCG CEP CPV+AI  + +
Sbjct: 1  MTYVIGKPCIDVTDRACVEECPVDCIYEGGRSLYIHPDEFVDCGACEPVCPVEAIYYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLP 88
             EL   +    A     +  +   L 
Sbjct: 61 LPQELHPHLADNVAFFTETLPGRDGPLG 88


>gi|239908207|ref|YP_002954948.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798073|dbj|BAH77062.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 375

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +VV  + CI C   +CV VCPV           I    CI CG C   CP  A+  D   
Sbjct: 195 FVVEPKKCIGC--AECVAVCPVGAATMQGKKAVIDKATCIGCGECLTVCPKKAMSIDWRT 252

Query: 62  GLELWLKINSEYA 74
            +  +++   EYA
Sbjct: 253 EIVPFMERMVEYA 265


>gi|221633402|ref|YP_002522627.1| hypothetical protein trd_1422 [Thermomicrobium roseum DSM 5159]
 gi|221155410|gb|ACM04537.1| conserved domain protein [Thermomicrobium roseum DSM 5159]
          Length = 83

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYV+ E CI  K   CVEVCPVDC           I+PDECIDCGVC   CPV+AI  +
Sbjct: 1  MTYVIAEPCIGVKDASCVEVCPVDCIKSDPEAEQYFINPDECIDCGVCAEVCPVEAIYFE 60

Query: 59 T--EPGLELWLKINSEYAT 75
                   +L+ N EY  
Sbjct: 61 DDLPEQWRHYLQKNREYFQ 79


>gi|227548437|ref|ZP_03978486.1| ferredoxin [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079481|gb|EEI17444.1| ferredoxin [Corynebacterium lipophiloflavum DSM 44291]
          Length = 110

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTY++ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 4  MTYIIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 63

Query: 59 TEPGLELWLKINSEYATQ 76
          T      +  +N  +   
Sbjct: 64 TPEEWADYYDVNVAFFDN 81


>gi|282865413|ref|ZP_06274465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
 gi|282559886|gb|EFB65436.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
          Length = 106

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|119715428|ref|YP_922393.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119536089|gb|ABL80706.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 108

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+++ C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVISQPCVDVKDRACVDECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           T    + +   N  +            S   AAK+ G         +  P  
Sbjct: 61  TPEEWKAYYDANVHFFDDL-------GSPGGAAKL-GEIDHDHPMIAELPPQ 104


>gi|21223505|ref|NP_629284.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|256785389|ref|ZP_05523820.1| ferredoxin [Streptomyces lividans TK24]
 gi|289769285|ref|ZP_06528663.1| ferredoxin [Streptomyces lividans TK24]
 gi|9967647|emb|CAC05765.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|289699484|gb|EFD66913.1| ferredoxin [Streptomyces lividans TK24]
          Length = 106

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|145596271|ref|YP_001160568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Salinispora tropica CNB-440]
 gi|145305608|gb|ABP56190.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Salinispora tropica CNB-440]
          Length = 108

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +   N E+  
Sbjct: 61 VPEQWKDYTAANYEFFE 77


>gi|297192269|ref|ZP_06909667.1| ferredoxin [Streptomyces pristinaespiralis ATCC 25486]
 gi|190333637|gb|ACE73826.1| putative ferredoxin [Streptomyces peucetius ATCC 27952]
 gi|297151282|gb|EFH31065.1| ferredoxin [Streptomyces pristinaespiralis ATCC 25486]
          Length = 106

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|219847452|ref|YP_002461885.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219541711|gb|ACL23449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 559

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT  C  C +  CV +CPV   Y+  + +    P  CI C  C   CP DAI  D E 
Sbjct: 53  FQVT-RCNHCANPPCVRICPVTAMYQRTDGIVEFDPKVCIGCKACMQACPYDAIYIDPET 111

Query: 62  G 62
            
Sbjct: 112 H 112



 Score = 41.5 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 13/60 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---------CEPECPVDAIKPDT 59
           CI CK   C++ CP D  Y        +  +C  C           CE  CP  AI    
Sbjct: 90  CIGCK--ACMQACPYDAIYIDPETH--NAAKCHFCAHRIDQGLKPACEIVCPEQAIISGD 145


>gi|108799685|ref|YP_639882.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119868795|ref|YP_938747.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. KMS]
 gi|126435329|ref|YP_001071020.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|108770104|gb|ABG08826.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119694884|gb|ABL91957.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. KMS]
 gi|126235129|gb|ABN98529.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 114

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+   C+      CV  CPVDC YEG+  + I+PDEC+DCG C   C +DAI    D
Sbjct: 1  MTYVIGSACVDVVDKSCVPECPVDCIYEGDRVMYINPDECVDCGACRVICKMDAIFYETD 60

Query: 59 TEPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGV 96
               +  L  N+ +     P       +   +A +  +
Sbjct: 61 LPEDQQRHLADNAAFFTEVLPGRDAPLGAPGGSATVGRI 99


>gi|15609144|ref|NP_216523.1| ferredoxin FDXA [Mycobacterium tuberculosis H37Rv]
 gi|15841489|ref|NP_336526.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31793187|ref|NP_855680.1| ferredoxin FDXA [Mycobacterium bovis AF2122/97]
 gi|121637891|ref|YP_978114.1| putative ferredoxin fdxA [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|148661821|ref|YP_001283344.1| ferredoxin FdxA [Mycobacterium tuberculosis H37Ra]
 gi|148823222|ref|YP_001287976.1| ferredoxin fdxA [Mycobacterium tuberculosis F11]
 gi|167970464|ref|ZP_02552741.1| ferredoxin fdxA [Mycobacterium tuberculosis H37Ra]
 gi|215404186|ref|ZP_03416367.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|215411702|ref|ZP_03420498.1| ferredoxin fdxA [Mycobacterium tuberculosis 94_M4241A]
 gi|215427368|ref|ZP_03425287.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|215430929|ref|ZP_03428848.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|215446220|ref|ZP_03432972.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|218753724|ref|ZP_03532520.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|219557969|ref|ZP_03537045.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|224990385|ref|YP_002645072.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798941|ref|YP_003031942.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 1435]
 gi|254232177|ref|ZP_04925504.1| ferredoxin fdxA [Mycobacterium tuberculosis C]
 gi|254364826|ref|ZP_04980872.1| ferredoxin fdxA [Mycobacterium tuberculosis str. Haarlem]
 gi|254551030|ref|ZP_05141477.1| ferredoxin fdxA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186982|ref|ZP_05764456.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|260201110|ref|ZP_05768601.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|260205290|ref|ZP_05772781.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289443498|ref|ZP_06433242.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|289447624|ref|ZP_06437368.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|289554213|ref|ZP_06443423.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 605]
 gi|289570107|ref|ZP_06450334.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|289574683|ref|ZP_06454910.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289746045|ref|ZP_06505423.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|289750589|ref|ZP_06509967.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|289754113|ref|ZP_06513491.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|289758123|ref|ZP_06517501.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|289762161|ref|ZP_06521539.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|294996943|ref|ZP_06802634.1| ferredoxin fdxA [Mycobacterium tuberculosis 210]
 gi|297634582|ref|ZP_06952362.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 4207]
 gi|297731570|ref|ZP_06960688.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN R506]
 gi|298525509|ref|ZP_07012918.1| ferredoxin [Mycobacterium tuberculosis 94_M4241A]
 gi|306776244|ref|ZP_07414581.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu001]
 gi|306780027|ref|ZP_07418364.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu002]
 gi|306784775|ref|ZP_07423097.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu003]
 gi|306789133|ref|ZP_07427455.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu004]
 gi|306793467|ref|ZP_07431769.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu005]
 gi|306797851|ref|ZP_07436153.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu006]
 gi|306803731|ref|ZP_07440399.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu008]
 gi|306808305|ref|ZP_07444973.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu007]
 gi|306968129|ref|ZP_07480790.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu009]
 gi|306972354|ref|ZP_07485015.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu010]
 gi|307080063|ref|ZP_07489233.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu011]
 gi|307084638|ref|ZP_07493751.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu012]
 gi|313658903|ref|ZP_07815783.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN V2475]
 gi|54037088|sp|P64123|FER_MYCBO RecName: Full=Ferredoxin
 gi|54040765|sp|P64122|FER_MYCTU RecName: Full=Ferredoxin
 gi|1403446|emb|CAA98408.1| PROBABLE FERREDOXIN FDXA [Mycobacterium tuberculosis H37Rv]
 gi|13881731|gb|AAK46340.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31618779|emb|CAD96883.1| PROBABLE FERREDOXIN FDXA [Mycobacterium bovis AF2122/97]
 gi|121493538|emb|CAL72012.1| Probable ferredoxin fdxA [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|124601236|gb|EAY60246.1| ferredoxin fdxA [Mycobacterium tuberculosis C]
 gi|134150340|gb|EBA42385.1| ferredoxin fdxA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505973|gb|ABQ73782.1| ferredoxin FdxA [Mycobacterium tuberculosis H37Ra]
 gi|148721749|gb|ABR06374.1| ferredoxin fdxA [Mycobacterium tuberculosis F11]
 gi|224773498|dbj|BAH26304.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320444|gb|ACT25047.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 1435]
 gi|289416417|gb|EFD13657.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|289420582|gb|EFD17783.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|289438845|gb|EFD21338.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 605]
 gi|289539114|gb|EFD43692.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289543861|gb|EFD47509.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|289686573|gb|EFD54061.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|289691176|gb|EFD58605.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|289694700|gb|EFD62129.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|289709667|gb|EFD73683.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|289713687|gb|EFD77699.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|298495303|gb|EFI30597.1| ferredoxin [Mycobacterium tuberculosis 94_M4241A]
 gi|308215355|gb|EFO74754.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu001]
 gi|308327065|gb|EFP15916.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu002]
 gi|308330506|gb|EFP19357.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu003]
 gi|308334341|gb|EFP23192.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu004]
 gi|308338142|gb|EFP26993.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu005]
 gi|308341834|gb|EFP30685.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu006]
 gi|308345322|gb|EFP34173.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu007]
 gi|308349624|gb|EFP38475.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu008]
 gi|308354253|gb|EFP43104.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu009]
 gi|308358230|gb|EFP47081.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu010]
 gi|308362161|gb|EFP51012.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu011]
 gi|308365815|gb|EFP54666.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu012]
 gi|323719499|gb|EGB28626.1| ferredoxin fdxA [Mycobacterium tuberculosis CDC1551A]
 gi|326903619|gb|EGE50552.1| ferredoxin fdxA [Mycobacterium tuberculosis W-148]
 gi|328458696|gb|AEB04119.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 4207]
          Length = 114

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+   C+      CV+ CPVDC YEG   L I+PDEC+DCG C+P C V+AI    D
Sbjct: 1  MTYVIGSECVDVMDKSCVQECPVDCIYEGARMLYINPDECVDCGACKPACRVEAIYWEGD 60

Query: 59 TEPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGV 96
                  L  N+ +     P       S   AA +  +
Sbjct: 61 LPDDQHQHLGDNAAFFHQVLPGRVAPLGSPGGAAAVGPI 99


>gi|269955770|ref|YP_003325559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269304451|gb|ACZ30001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 105

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                + +   N E+            S   AAK+ G+ +K        P  
Sbjct: 61  VPDQWKDYYGANVEFFDDL-------GSPGGAAKL-GLIEKDHPLVEALPPQ 104


>gi|148655927|ref|YP_001276132.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseiflexus sp. RS-1]
 gi|148568037|gb|ABQ90182.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Roseiflexus
           sp. RS-1]
          Length = 565

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + VT  C  C +  CV +CPV   Y+  + +    P  CI C  C   CP DAI  D E
Sbjct: 53  FQVT-RCNHCANPPCVRICPVTAMYQRSDGIVEFDPRVCIGCKACLQACPYDAIYIDPE 110


>gi|288574064|ref|ZP_06392421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569805|gb|EFC91362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 354

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C+ C    C   CPV           I  D CI CG C   CP  AI  D    +
Sbjct: 189 VDDEKCVGC--GRCFRNCPVKAISMTGGKAVIDKDVCIGCGECLTVCPASAISLDWRTDV 246

Query: 64  ELWLKINSEYA 74
             + +  +EYA
Sbjct: 247 VQFHRRMAEYA 257



 Score = 33.4 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
             +  + CI C   +C+ VCP            +    
Sbjct: 216 AVIDKDVCIGC--GECLTVCPASAISLDWRTDVVQFHR 251


>gi|111220922|ref|YP_711716.1| ferredoxin [Frankia alni ACN14a]
 gi|111148454|emb|CAJ60125.1| Ferredoxin (partial match) [Frankia alni ACN14a]
          Length = 140

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YV+T  C+      CV+ CPVDC YEG   L IHP+ECIDCG C   CPVDAI  + +
Sbjct: 1   MVYVITAACLDVTDRSCVDECPVDCVYEGRRKLYIHPEECIDCGACARVCPVDAIVWERD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKES---LPSAAKMDGVKQKYEKYFSPNPGGKN 112
              +    +   +A  +  ++ + +       A  +  V    +   +  P   +
Sbjct: 61  LDGDGHAHLGDAHAFFYRPLSGRPKPIGAPGGAGMLGPVGVDTDLVTAARPAVGD 115


>gi|213970229|ref|ZP_03398360.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|213925110|gb|EEB58674.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
          Length = 89

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M YVV + C+ CK T CV+VCPVD F + +  L I PD CI+CGVCEPECPVDAI    +
Sbjct: 1  MPYVVGKECLSCKSTICVDVCPVDAFRDADYQLVICPDTCIECGVCEPECPVDAIINPEE 60

Query: 59 TEPGLELWLKINSEYATQWPNITT 82
                  + +NSE +   P I  
Sbjct: 61 YPGENHDVIVLNSELSKTSPVIFK 84


>gi|318058410|ref|ZP_07977133.1| ferredoxin [Streptomyces sp. SA3_actG]
 gi|318080441|ref|ZP_07987773.1| ferredoxin [Streptomyces sp. SA3_actF]
          Length = 106

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|317122344|ref|YP_004102347.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter marianensis DSM 12885]
 gi|315592324|gb|ADU51620.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter marianensis DSM 12885]
          Length = 78

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   C EVCPVDC YEGE+ L I+PDECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGVKDKSCQEVCPVDCIYEGEDQLYINPDECIGCSACAAVCPVEAIYDEDE 60

Query: 61 --PGLELWLKINSEYATQ 76
               + +++ N ++  Q
Sbjct: 61 VPEQWKHYIEKNRKFFEQ 78


>gi|257054691|ref|YP_003132523.1| ferredoxin [Saccharomonospora viridis DSM 43017]
 gi|256584563|gb|ACU95696.1| ferredoxin [Saccharomonospora viridis DSM 43017]
          Length = 106

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVLDKSCIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 + K N+++  +         S   AAK+  V
Sbjct: 61 VPDEWAAYTKANADFFEEL-------GSPGGAAKVGKV 91


>gi|331694874|ref|YP_004331113.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326949563|gb|AEA23260.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 108

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C+E CPVDC YEG   + IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDLLDKACIEECPVDCIYEGGRMMYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 + K N+E+  +         S   A+K+  V
Sbjct: 61 VPEQWGAYQKANAEFFDEL-------GSPGGASKVGKV 91


>gi|291302949|ref|YP_003514227.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572169|gb|ADD45134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Stackebrandtia nassauensis DSM 44728]
          Length = 106

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAEPCVDLLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  +   N E+  +         S   A+K+ G  +K   + +  P  
Sbjct: 61  VPEEWSDYTGANYEFFEEL-------GSPGGASKV-GKIEKDATFVASRPAK 104


>gi|239982109|ref|ZP_04704633.1| ferredoxin [Streptomyces albus J1074]
 gi|291453957|ref|ZP_06593347.1| ferredoxin [Streptomyces albus J1074]
 gi|291356906|gb|EFE83808.1| ferredoxin [Streptomyces albus J1074]
          Length = 106

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|297202177|ref|ZP_06919574.1| ferredoxin [Streptomyces sviceus ATCC 29083]
 gi|197713616|gb|EDY57650.1| ferredoxin [Streptomyces sviceus ATCC 29083]
          Length = 105

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPDEWKDYYKANVEFFD 77


>gi|291191900|gb|ADD83007.1| PtnO9 [Streptomyces platensis]
          Length = 111

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  KH  C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDLKHKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|220913278|ref|YP_002488587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arthrobacter
           chlorophenolicus A6]
 gi|219860156|gb|ACL40498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 108

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/112 (41%), Positives = 57/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           T      + K N E+            S   AAK+ G   K     +  P  
Sbjct: 61  TPDEWADYYKANVEFFDDL-------GSPGGAAKI-GNTGKDHPMIAALPPQ 104


>gi|298242651|ref|ZP_06966458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297555705|gb|EFH89569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 87

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ CI  +   CV+VCPVDC +        E    L I+PDECIDCG CEP CPV
Sbjct: 1  MAYVITQPCIGVRDASCVDVCPVDCIHPSSNEPGYEEAEQLFINPDECIDCGACEPACPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEYA 74
           AI  ++      + ++KIN+E+ 
Sbjct: 61 TAIFEESAVPDEWKSYIKINAEFF 84


>gi|254388886|ref|ZP_05004117.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294814826|ref|ZP_06773469.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|326443204|ref|ZP_08217938.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|197702604|gb|EDY48416.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294327425|gb|EFG09068.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
          Length = 105

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGRRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|290957604|ref|YP_003488786.1| ferredoxin [Streptomyces scabiei 87.22]
 gi|260647130|emb|CBG70229.1| ferredoxin [Streptomyces scabiei 87.22]
          Length = 105

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|238060947|ref|ZP_04605656.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
 gi|237882758|gb|EEP71586.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
          Length = 108

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + +   N E+            S   A+K+  V+ K   + +  P   
Sbjct: 61  VPEQWKDYTGANYEFFEDL-------GSPGGASKIGKVE-KDATFVAGQPPRG 105


>gi|296170063|ref|ZP_06851666.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895273|gb|EFG74983.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 113

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 10/112 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 7   TYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDDV 66

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 + +IN+++ T+         S   AAK+ G+ +   +     P   
Sbjct: 67  PDQWSQYTQINADFFTEL-------GSPGGAAKV-GLTENDPQVVKDLPPQG 110


>gi|308177963|ref|YP_003917369.1| 4Fe-4S ferredoxin domain-containing protein [Arthrobacter
           arilaitensis Re117]
 gi|307745426|emb|CBT76398.1| 4Fe-4S ferredoxin domain-containing protein [Arthrobacter
           arilaitensis Re117]
          Length = 107

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ + C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAQPCVDVKDKACVEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  + K N ++  +         S   AAK+ G         S  P  
Sbjct: 61  VPDEWADYYKANVDFFDEL-------GSPGGAAKI-GNTGTDHPLISALPPQ 104


>gi|225022906|ref|ZP_03712098.1| hypothetical protein CORMATOL_02952 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305682158|ref|ZP_07404962.1| ferredoxin [Corynebacterium matruchotii ATCC 14266]
 gi|224944129|gb|EEG25338.1| hypothetical protein CORMATOL_02952 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305658631|gb|EFM48134.1| ferredoxin [Corynebacterium matruchotii ATCC 14266]
          Length = 105

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCVDVMDRACVEECPVDCIYEGQRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 ++  N+ +  
Sbjct: 61 VPDEWIDYIDANAAFFD 77


>gi|323359534|ref|YP_004225930.1| ferredoxin [Microbacterium testaceum StLB037]
 gi|323275905|dbj|BAJ76050.1| ferredoxin [Microbacterium testaceum StLB037]
          Length = 106

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  + K N E+            S   AAK+ GV  K     +  P  
Sbjct: 61  LPEEWSDYYKANVEFFDD-------IGSPGGAAKV-GVIAKDHPVITALPPQ 104


>gi|297564743|ref|YP_003683715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849192|gb|ADH62207.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 86

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+G + L IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVIAEPCIGVKDRSCQEVCPVECIYDGGDQLYIHPDECIDCGACVPACPVSAIYPQED 60

Query: 59 TEPGLELWLKINSEYAT 75
                 +++ N   + 
Sbjct: 61 LPAEWYSYIEKNRRLSA 77


>gi|111226128|ref|YP_716922.1| ferredoxin [Frankia alni ACN14a]
 gi|111153660|emb|CAJ65420.1| Ferredoxin [Frankia alni ACN14a]
          Length = 111

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          MT+VVT  CI  K T C+  CPVDC YEG   L I+P+ECIDCG CE  CPVDAI     
Sbjct: 1  MTFVVTSACIDVKDTACLGECPVDCIYEGVRKLYINPNECIDCGACESACPVDAIMSVRL 60

Query: 59 TEPGLELWLKINSEYATQ-WPNITTKKESLPSA 90
                 ++   + + T   P           A
Sbjct: 61 VPRAEAEFVVDEARFFTTILPGRDAPVGDPGGA 93


>gi|239929111|ref|ZP_04686064.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|291437447|ref|ZP_06576837.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|302558592|ref|ZP_07310934.1| ferredoxin [Streptomyces griseoflavus Tu4000]
 gi|291340342|gb|EFE67298.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|302476210|gb|EFL39303.1| ferredoxin [Streptomyces griseoflavus Tu4000]
          Length = 105

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|325964023|ref|YP_004241929.1| ferredoxin [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470110|gb|ADX73795.1| ferredoxin [Arthrobacter phenanthrenivorans Sphe3]
          Length = 108

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/112 (41%), Positives = 57/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           T      + K N E+            S   AAK+ G   K     +  P  
Sbjct: 61  TPEEWADYYKANVEFFDDL-------GSPGGAAKI-GNTGKDHPMIAALPPQ 104


>gi|297571981|ref|YP_003697755.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932328|gb|ADH93136.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 107

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CV+ CPVDC YEGE  L IHPDEC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACVDECPVDCIYEGERTLYIHPDECVDCGACEPVCPTEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + + N E+            S   A K+ G   K     +  P
Sbjct: 61  LPEEWSEYHRANVEFFDDL-------GSPGGATKL-GPIAKDHPLIAELP 102


>gi|88855520|ref|ZP_01130184.1| ferredoxin [marine actinobacterium PHSC20C1]
 gi|88815427|gb|EAR25285.1| ferredoxin [marine actinobacterium PHSC20C1]
          Length = 110

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C++ CPVDC YEG   L IHPDEC+DCG C+P CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIDACPVDCIYEGGRSLYIHPDECVDCGACDPVCPVEAIYYVDD 60

Query: 59 TEPGLELWLKINSEYA 74
                 + + N ++ 
Sbjct: 61 VPDKWGEYTQANVDFF 76


>gi|260904087|ref|ZP_05912409.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
          BL2]
          Length = 107

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTY++ + C+  K   CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYIIAQPCVDLKDKACVDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T      + K N E+  
Sbjct: 61 TPEEWSEYYKANVEFFD 77


>gi|313902860|ref|ZP_07836256.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter subterraneus DSM 13965]
 gi|313466795|gb|EFR62313.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter subterraneus DSM 13965]
          Length = 78

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   C EVCPVDC YEG++ L I+P+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGVKDKSCQEVCPVDCIYEGDDQLYINPEECIGCSACAAVCPVEAIYDEDE 60

Query: 61 --PGLELWLKINSEYATQ 76
               + +++ N ++  Q
Sbjct: 61 VPEQWKSYIEKNRKFFEQ 78


>gi|156742145|ref|YP_001432274.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233473|gb|ABU58256.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
          Length = 565

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + VT  C  C +  CV +CPV   Y+  + +    P  CI C  C   CP DAI  D E
Sbjct: 53  FQVT-RCNHCANPPCVRICPVTAMYQRADGIVEFDPKACIGCKACLQACPYDAIYIDPE 110


>gi|269219106|ref|ZP_06162960.1| ferredoxin [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211253|gb|EEZ77593.1| ferredoxin [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 106

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++   C+      CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIALPCVDVMDRACVDECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 ++  +N+E+            S   A ++ G       Y +  P   
Sbjct: 61  LPEEWSVFESVNAEFFDD-------IGSPGGAQRL-GPTGSDHPYVAGLPPQG 105


>gi|163848741|ref|YP_001636785.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222526688|ref|YP_002571159.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163670030|gb|ABY36396.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450567|gb|ACM54833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           sp. Y-400-fl]
          Length = 559

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT  C  C +  CV +CPV   Y+  + +    P  CI C  C   CP DAI  D E 
Sbjct: 53  FQVT-RCNHCANPPCVRICPVTAMYQRTDGIVEFDPKVCIGCKACLQACPYDAIYIDPES 111

Query: 62  G 62
            
Sbjct: 112 H 112



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 13/60 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---------CEPECPVDAIKPDT 59
           CI CK   C++ CP D  Y        +  +C  C           CE  CP  AI    
Sbjct: 90  CIGCK--ACLQACPYDAIYIDPESH--NAAKCHFCAHRIDQGLKPACEIVCPEQAIISGD 145


>gi|111223262|ref|YP_714056.1| ferredoxin [Frankia alni ACN14a]
 gi|111150794|emb|CAJ62498.1| Ferredoxin [Frankia alni ACN14a]
          Length = 115

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YV+T  CI  K   C+E CP DC YEG+  + I+PDEC +CG C   CPV A   D  
Sbjct: 5   MPYVITAACIDVKDGSCLEGCPADCIYEGDRKMYINPDECTECGACAVSCPVGAALSDDR 64

Query: 60  -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGVKQK 99
            +   + ++   + +     P           AA++  +K  
Sbjct: 65  VKAKDKEFIDSEAAFFTDILPGRDEPLGEPGGAARVGKIKAD 106


>gi|207724517|ref|YP_002254914.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum MolK2]
 gi|207739155|ref|YP_002257548.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum IPO1609]
 gi|206589739|emb|CAQ36700.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum MolK2]
 gi|206592528|emb|CAQ59434.1| probable ferredoxin protein 3fe-4s [Ralstonia solanacearum IPO1609]
          Length = 96

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYATQ--WP 78
           +DCF+ G NFL I PD CIDC +C PECPV AI    D       ++ +N++ + +  WP
Sbjct: 1   MDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAEADVPADQREFIALNAQLSRRPDWP 60

Query: 79  NITTKKESLPSAAKMDGVKQKYEKYF-SPNPGGK 111
            +T  +  L   A+   VK K      +P PG +
Sbjct: 61  RLTQVQPPLADHARWAQVKDKRSTLLIAPEPGTQ 94


>gi|319441049|ref|ZP_07990205.1| hypothetical protein CvarD4_04702 [Corynebacterium variabile DSM
          44702]
          Length = 107

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E ++  N+ +  
Sbjct: 61 LPDEWEDYIDFNTAFFD 77


>gi|239738513|gb|ACS13712.1| PtmO9 [Streptomyces platensis]
          Length = 111

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDLKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|94986311|ref|YP_605675.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
          DSM 11300]
 gi|94556592|gb|ABF46506.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
          geothermalis DSM 11300]
          Length = 78

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFVIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
             G E +   N  + 
Sbjct: 61 VPAGEEEFTLKNRAFF 76


>gi|260772955|ref|ZP_05881871.1| ferredoxin [Vibrio metschnikovii CIP 69.14]
 gi|260612094|gb|EEX37297.1| ferredoxin [Vibrio metschnikovii CIP 69.14]
          Length = 75

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C PEC   AI  + E     +L++++N+E A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVPECDAQAIFQEDELPDDQKLFIELNAELAEIWPTQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  GKWNGVPNKL 70


>gi|240168739|ref|ZP_04747398.1| FdxC_1 [Mycobacterium kansasii ATCC 12478]
          Length = 108

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  +  
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 + +IN+++  
Sbjct: 61 LPGEWNEYQQINADFFA 77


>gi|328884828|emb|CCA58067.1| ferredoxin [Streptomyces venezuelae ATCC 10712]
          Length = 106

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|320335406|ref|YP_004172117.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
 gi|319756695|gb|ADV68452.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
          Length = 78

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T+ C   +   C EVCP DC ++      I P+ECIDCG C   CPV AI  + +
Sbjct: 1  MAYVITDRCAGVRDGACREVCPKDCIHDAGAQFVIDPEECIDCGACVVACPVGAIAHEDD 60

Query: 61 PGLEL--WLKINSEYA 74
                 + ++N  + 
Sbjct: 61 LVGAEGVFAQVNRAFF 76


>gi|296393263|ref|YP_003658147.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Segniliparus rotundus DSM 44985]
 gi|296180410|gb|ADG97316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Segniliparus rotundus DSM 44985]
          Length = 108

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVMDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N+E+  
Sbjct: 61 VPDEWASFTTANAEFFD 77


>gi|309813204|ref|ZP_07706925.1| ferredoxin [Dermacoccus sp. Ellin185]
 gi|308432800|gb|EFP56711.1| ferredoxin [Dermacoccus sp. Ellin185]
          Length = 107

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/112 (43%), Positives = 59/112 (52%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           T      + K N E+            S   AAKM GV +K     +  P  
Sbjct: 61  TPEEWADYYKANVEFFDDL-------GSPGGAAKM-GVIKKDHPIIAVLPPQ 104


>gi|295836680|ref|ZP_06823613.1| ferredoxin [Streptomyces sp. SPB74]
 gi|302521743|ref|ZP_07274085.1| ferredoxin [Streptomyces sp. SPB78]
 gi|295826155|gb|EDY46645.2| ferredoxin [Streptomyces sp. SPB74]
 gi|302430638|gb|EFL02454.1| ferredoxin [Streptomyces sp. SPB78]
          Length = 137

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 33  TYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 92

Query: 60  EPGLELWLKINSEYAT 75
               + + K N E+  
Sbjct: 93  PEEWKDYYKANVEFFD 108


>gi|326772206|ref|ZP_08231491.1| ferredoxin [Actinomyces viscosus C505]
 gi|326638339|gb|EGE39240.1| ferredoxin [Actinomyces viscosus C505]
          Length = 116

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E + + N ++  
Sbjct: 61 VPEEWEDYTRANIDFFE 77


>gi|218507913|ref|ZP_03505791.1| ferredoxin III protein [Rhizobium etli Brasil 5]
          Length = 59

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPE P +AIKPDT
Sbjct: 1  MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPESPAEAIKPDT 59


>gi|320531785|ref|ZP_08032710.1| putative ferredoxin [Actinomyces sp. oral taxon 171 str. F0337]
 gi|325067472|ref|ZP_08126145.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Actinomyces oris K20]
 gi|329944142|ref|ZP_08292401.1| ferredoxin [Actinomyces sp. oral taxon 170 str. F0386]
 gi|320135997|gb|EFW28020.1| putative ferredoxin [Actinomyces sp. oral taxon 171 str. F0337]
 gi|328530872|gb|EGF57728.1| ferredoxin [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 116

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E + + N ++  
Sbjct: 61 VPEEWEDYTRANIDFFE 77


>gi|283853706|ref|ZP_06370936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283570916|gb|EFC18946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 378

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C   +CV VCPV      +   AI    CI CG C   CP  A+  D    +
Sbjct: 199 VDAKKCIGC--GECVAVCPVGAATMADRKAAIDKSSCIGCGECLTVCPKKAMSIDWHTEI 256

Query: 64  ELWLKINSEYA 74
             +++   EYA
Sbjct: 257 VPFMERMVEYA 267


>gi|258654428|ref|YP_003203584.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258557653|gb|ACV80595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 108

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVLDRACVEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + + N ++            S   A+K   V +      +  P G++
Sbjct: 61  VPAEWADYTRANVDFFDDL-------GSPGGASKTGKVAKDDPMVAALPPMGED 107


>gi|300782955|ref|YP_003763246.1| ferredoxin [Amycolatopsis mediterranei U32]
 gi|269784343|emb|CBH51373.1| ferredoxin [Amycolatopsis balhimycina]
 gi|299792469|gb|ADJ42844.1| ferredoxin [Amycolatopsis mediterranei U32]
          Length = 106

 Score = 67.7 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVLDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 + K N ++  
Sbjct: 61 VPDNWSDYTKANVDFFD 77


>gi|163745320|ref|ZP_02152680.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
          indolifex HEL-45]
 gi|161382138|gb|EDQ06547.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
          indolifex HEL-45]
          Length = 115

 Score = 67.7 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  ++T  CI  K   C   CPVDC YEGE    IHP ECI+CG+CE  CPVDAI+ D E
Sbjct: 1  MPLIITSACIDVKDGICTTSCPVDCIYEGERMFYIHPTECIECGMCESICPVDAIRYDDE 60

Query: 61 PG--LELWLKINSE 72
                 +++IN+E
Sbjct: 61 ATGAEAKFVRINAE 74


>gi|319950850|ref|ZP_08024734.1| 7Fe ferredoxin [Dietzia cinnamea P4]
 gi|319435505|gb|EFV90741.1| 7Fe ferredoxin [Dietzia cinnamea P4]
          Length = 107

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + E C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAEPCVDVMDKSCVEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYED- 59

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
             + W + N+  A  +  +     S   AAK+  V
Sbjct: 60 DVPDEWTEYNAANADFFVEL----GSPGGAAKVGKV 91


>gi|302524318|ref|ZP_07276660.1| ferredoxin [Streptomyces sp. AA4]
 gi|302433213|gb|EFL05029.1| ferredoxin [Streptomyces sp. AA4]
          Length = 106

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVLDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYA 74
                 + K N ++ 
Sbjct: 61 VPDNWSDYTKANVDFF 76


>gi|32476854|ref|NP_869848.1| ferredoxin [Rhodopirellula baltica SH 1]
 gi|32447402|emb|CAD78991.1| ferredoxin [Rhodopirellula baltica SH 1]
          Length = 84

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT VVT+ CI CK   C+ VCP DCF+E E  + I+PD+C+DC  C PECP +AI    D
Sbjct: 1  MTMVVTQPCIGCKDKACLTVCPADCFHEDEQMVYINPDDCVDCEACIPECPTEAIFGEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITT 82
               + ++ +N+  A   P  + 
Sbjct: 61 VPEQWKDFIALNAINADACPPASE 84


>gi|283782746|ref|YP_003373500.1| putative ferredoxin 1 [Gardnerella vaginalis 409-05]
 gi|283442204|gb|ADB14670.1| putative ferredoxin 1 [Gardnerella vaginalis 409-05]
          Length = 110

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             G E +     +Y  +  ++    ++   A+  D 
Sbjct: 61 LPDGWEWYRDAAVDYFDKLGDLGGATDA--GASGWDE 95


>gi|213964508|ref|ZP_03392708.1| ferredoxin [Corynebacterium amycolatum SK46]
 gi|213952701|gb|EEB64083.1| ferredoxin [Corynebacterium amycolatum SK46]
          Length = 107

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 ++  N ++  
Sbjct: 61 VPDEWVEFIDANVDWFD 77


>gi|116671359|ref|YP_832292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arthrobacter sp. FB24]
 gi|116611468|gb|ABK04192.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Arthrobacter sp. FB24]
          Length = 108

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T      + K N E+  
Sbjct: 61 TPDEWADYYKANVEFFD 77


>gi|118618156|ref|YP_906488.1| ferredoxin FdxC_1 [Mycobacterium ulcerans Agy99]
 gi|183983410|ref|YP_001851701.1| ferredoxin FdxC_1 [Mycobacterium marinum M]
 gi|118570266|gb|ABL05017.1| ferredoxin FdxC_1 [Mycobacterium ulcerans Agy99]
 gi|183176736|gb|ACC41846.1| ferredoxin FdxC_1 [Mycobacterium marinum M]
          Length = 108

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 9/103 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  + +
Sbjct: 1   MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              E   + +IN ++ ++         S   AAK+   +   +
Sbjct: 61  LPAEYSGYTQINVDFFSEL-------GSPGGAAKVGLTENDPD 96


>gi|50955230|ref|YP_062518.1| ferredoxin [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951712|gb|AAT89413.1| ferredoxin [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 106

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  + K N E+            S   AAK+ GV  K     +  P  
Sbjct: 61  LPEEWADYYKANVEFFDD-------IGSPGGAAKV-GVIAKDHPIIAALPPQ 104


>gi|297242981|ref|ZP_06926919.1| ferredoxin [Gardnerella vaginalis AMD]
 gi|296889192|gb|EFH27926.1| ferredoxin [Gardnerella vaginalis AMD]
          Length = 110

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             G E +     +Y  +  ++    ++   A+  D 
Sbjct: 61 LPEGWEWYRDAAVDYFDKLGDLGGATDA--GASGWDE 95


>gi|151568126|pdb|2V2K|A Chain A, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
           Mycobacterium Smegmatis
 gi|151568127|pdb|2V2K|B Chain B, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
           Mycobacterium Smegmatis
          Length = 105

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+D G CEP CPV+AI  +   
Sbjct: 1   TYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDXGACEPVCPVEAIYYEDDV 60

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 + + N+++  +         S   A+K+ G      +     P   
Sbjct: 61  PDQWSSYAQANADFFAEL-------GSPGGASKV-GQTDNDPQAIKDLPPQG 104


>gi|311900686|dbj|BAJ33094.1| putative 7Fe ferredoxin [Kitasatospora setae KM-6054]
          Length = 104

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVV   C+  K   C E CPVD  YEG   L IHPDECIDCG CE  CPV+AI  + +
Sbjct: 1  MTYVVALPCVDVKDRACTEECPVDGIYEGPRMLYIHPDECIDCGACEVVCPVEAIHYEDD 60

Query: 61 PGLE--LWLKINSEYAT 75
             E   +   N+E+  
Sbjct: 61 LPAELRPFAAANAEFCA 77


>gi|260577611|ref|ZP_05845549.1| ferredoxin [Corynebacterium jeikeium ATCC 43734]
 gi|258604264|gb|EEW17503.1| ferredoxin [Corynebacterium jeikeium ATCC 43734]
          Length = 105

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E +   N+ +  
Sbjct: 61 VPDEWEEYNDANAAFFD 77


>gi|227494787|ref|ZP_03925103.1| possible ferredoxin [Actinomyces coleocanis DSM 15436]
 gi|226831239|gb|EEH63622.1| possible ferredoxin [Actinomyces coleocanis DSM 15436]
          Length = 107

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+  K   CV+ CPVDC YEG+  L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGQRSLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 + + N ++  
Sbjct: 61 LPEEWSDYYRANVDFFK 77


>gi|149920538|ref|ZP_01909005.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
           pacifica SIR-1]
 gi|149818582|gb|EDM78028.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
           pacifica SIR-1]
          Length = 573

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           T+ VT  C  C +  CV +CPV   Y+ ++ +     D CI C  C   CP DAI  D +
Sbjct: 51  TFQVT-RCNHCANPPCVRICPVTAMYQRDDGIVEFDKDACIGCKACMQACPYDAIHIDPD 109


>gi|147918998|ref|YP_687275.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110622671|emb|CAJ37949.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 370

 Score = 67.7 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C+ C    C  VCP    +  ++   +  + CI CG C   CPV +I  + E 
Sbjct: 189 PLVDEKGCVGC--GRCAAVCPRIAVHMEQDIAVVDDEVCIGCGECMTVCPVGSISFNWEK 246

Query: 62  GLELWLKINSEYA 74
            +  ++++ +EYA
Sbjct: 247 DIVPFMEMMTEYA 259


>gi|168703585|ref|ZP_02735862.1| ferredoxin [Gemmata obscuriglobus UQM 2246]
          Length = 103

 Score = 67.7 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +VVT NC  CK+TDC  VCPV+CFY+ E  L I P++CIDC  C PECPV+AI  +  
Sbjct: 1  MPHVVTSNCNDCKYTDCCVVCPVECFYQDETMLYIDPEDCIDCEACVPECPVEAIYSEPN 60

Query: 60 -EPGLELWLKINSEYA 74
                 ++++N+E A
Sbjct: 61 VPSQWSSFIQLNAERA 76


>gi|307332364|ref|ZP_07611435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
 gi|297157503|gb|ADI07215.1| ferredoxin [Streptomyces bingchenggensis BCW-1]
 gi|306881977|gb|EFN13092.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
          Length = 108

 Score = 67.7 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDLKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|296119440|ref|ZP_06837998.1| ferredoxin [Corynebacterium ammoniagenes DSM 20306]
 gi|295967323|gb|EFG80590.1| ferredoxin [Corynebacterium ammoniagenes DSM 20306]
          Length = 107

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYED- 59

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             + WL+ N   A  + ++ +   +
Sbjct: 60 DVPDEWLEYNDANAAFFDDLGSPGGA 85


>gi|54026725|ref|YP_120967.1| putative ferredoxin [Nocardia farcinica IFM 10152]
 gi|54018233|dbj|BAD59603.1| putative ferredoxin [Nocardia farcinica IFM 10152]
          Length = 106

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M Y++ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MPYIIAEPCVDVKDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           T      ++  N ++  +         S   A K+  V      +    P   
Sbjct: 61  TPDQWSGYVNANVDFFDEL-------GSPGGATKVGKV-DYDPPFIKELPPMG 105


>gi|256374918|ref|YP_003098578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Actinosynnema mirum DSM 43827]
 gi|255919221|gb|ACU34732.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Actinosynnema mirum DSM 43827]
          Length = 108

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCVDVLDKACIEECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 + K N ++            S   A+K+  V
Sbjct: 61 VPDEWSAYTKANVDFFDDL-------GSPGGASKVGKV 91


>gi|68536481|ref|YP_251186.1| hypothetical protein jk1395 [Corynebacterium jeikeium K411]
 gi|68264080|emb|CAI37568.1| fdxA [Corynebacterium jeikeium K411]
          Length = 105

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E +   N+ +  
Sbjct: 61 VPDEWEEYNDANAAFFD 77


>gi|120012|sp|P00215|FER_MYCSM RecName: Full=Ferredoxin
          Length = 106

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 1   TYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDDV 60

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                 + + N+++  +         S   A+K+       +      P G++
Sbjct: 61  PDQWSSYAQANADFFAEL-------GSPGGASKVGQTDNDPQAIKDLPPQGED 106


>gi|94969826|ref|YP_591874.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
          versatilis Ellin345]
 gi|94551876|gb|ABF41800.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
          Koribacter versatilis Ellin345]
          Length = 86

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +          E  L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDAEAHANEPMLYIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D     + + + N++Y 
Sbjct: 61 SAIFALDDLPEKWKEYAEKNAKYF 84


>gi|313902219|ref|ZP_07835626.1| ferredoxin [Thermaerobacter subterraneus DSM 13965]
 gi|313467499|gb|EFR63006.1| ferredoxin [Thermaerobacter subterraneus DSM 13965]
          Length = 82

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   CVEVCPVDC YEGE+   IHP+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGTKDQSCVEVCPVDCIYEGEDQFFIHPEECIGCSACAAVCPVEAIYDEDE 60

Query: 61 --PGLELWLKINSEYAT 75
               E + +   ++  
Sbjct: 61 VPEQWEHYKEKARKFFE 77


>gi|309389842|gb|ADO77722.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 471

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+VT+ C  C    CV  CPVD     +N   I   +CI+CG C   C  +AI
Sbjct: 111 YIVTDACRNCVAHKCVNACPVDAIVIIQNKAYIDQHKCIECGKCAKTCSYNAI 163


>gi|298253085|ref|ZP_06976877.1| ferredoxin [Gardnerella vaginalis 5-1]
 gi|297532480|gb|EFH71366.1| ferredoxin [Gardnerella vaginalis 5-1]
          Length = 110

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
               E +     +Y  +  ++    ++   A+  D 
Sbjct: 61 LPEDWEWYRDAAVDYFDKLGDLGGATDA--GASGWDE 95


>gi|25027716|ref|NP_737770.1| putative ferredoxin [Corynebacterium efficiens YS-314]
 gi|259506882|ref|ZP_05749782.1| ferredoxin [Corynebacterium efficiens YS-314]
 gi|23492998|dbj|BAC17970.1| putative ferredoxin [Corynebacterium efficiens YS-314]
 gi|259165514|gb|EEW50068.1| ferredoxin [Corynebacterium efficiens YS-314]
          Length = 105

 Score = 67.3 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 + + N+ +  
Sbjct: 61 VPDEWIDYNEANAAFFD 77


>gi|111021988|ref|YP_704960.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226364495|ref|YP_002782277.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|110821518|gb|ABG96802.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226242984|dbj|BAH53332.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 108

 Score = 67.3 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 + K N+++            S   AAK+  V
Sbjct: 61 VPDQWVEYTKANADFFDDL-------GSPGGAAKLGKV 91


>gi|302553940|ref|ZP_07306282.1| ferredoxin [Streptomyces viridochromogenes DSM 40736]
 gi|302471558|gb|EFL34651.1| ferredoxin [Streptomyces viridochromogenes DSM 40736]
          Length = 134

 Score = 67.3 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           TYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 31  TYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 90

Query: 60  EPGLELWLKINSEYAT 75
               + + K N E+  
Sbjct: 91  PEEWKDYYKANVEFFD 106


>gi|19554145|ref|NP_602147.1| ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|62391799|ref|YP_227201.1| ferredoxin [Corynebacterium glutamicum ATCC 13032]
 gi|21325732|dbj|BAC00353.1| Ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|41327141|emb|CAF20985.1| FERREDOXIN [Corynebacterium glutamicum ATCC 13032]
          Length = 107

 Score = 67.3 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELW--LKINSEYAT 75
             E W     N+ +  
Sbjct: 61 VPHEWWDYTGANAAFFD 77


>gi|254184178|ref|ZP_04890768.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|184214709|gb|EDU11752.1| putative ferredoxin [Burkholderia pseudomallei 1655]
          Length = 70

 Score = 67.3 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/60 (70%), Positives = 48/60 (80%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1  MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60


>gi|193213841|ref|YP_001995040.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193087318|gb|ACF12593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 547

 Score = 67.3 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + VT  C  C +  CV +CPV   Y+ E+ +     + CI C  C   CP +AI  D +
Sbjct: 52  FQVT-RCNHCANPPCVRICPVTAMYQREDGIVEFDKNVCIGCKACTQACPYNAIHVDPD 109


>gi|229819624|ref|YP_002881150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Beutenbergia cavernae DSM 12333]
 gi|229565537|gb|ACQ79388.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Beutenbergia cavernae DSM 12333]
          Length = 105

 Score = 67.3 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCVDIKDKACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
                 + K N E+  +         S   AAKM  + 
Sbjct: 61 VPEQWAEYYKANVEFFDEL-------GSPGGAAKMGMIP 92


>gi|324997613|ref|ZP_08118725.1| ferredoxin--NADP+ reductase [Pseudonocardia sp. P1]
          Length = 498

 Score = 66.9 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 12/103 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M + +T+ C  C    CV  CPV+C +   +         L I P  CIDCG C   CPV
Sbjct: 1   MAFAITQTC--CTDASCVAACPVNCIHPTPDEPDYTTTDMLYIDPRACIDCGACADACPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
           DA+ P       L  +  +N+ Y    P     +   P     
Sbjct: 59  DAVFPVERLSASLAGYADVNAAYYDGKPVAGKLEGDSPLFHDW 101


>gi|226307668|ref|YP_002767628.1| 7Fe ferredoxin [Rhodococcus erythropolis PR4]
 gi|229493921|ref|ZP_04387693.1| ferredoxin [Rhodococcus erythropolis SK121]
 gi|226186785|dbj|BAH34889.1| 7Fe ferredoxin [Rhodococcus erythropolis PR4]
 gi|229319198|gb|EEN85047.1| ferredoxin [Rhodococcus erythropolis SK121]
          Length = 107

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 ++  N ++            S   AAK+  V
Sbjct: 61 VPDQWNAYISTNVDFFDDL-------GSPGGAAKLGKV 91


>gi|320335830|ref|YP_004172541.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
 gi|319757119|gb|ADV68876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
          Length = 78

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
                 +++ N  + 
Sbjct: 61 VPGDQVPFIEKNRAHF 76


>gi|297623880|ref|YP_003705314.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Truepera radiovictrix DSM 17093]
 gi|297165060|gb|ADI14771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Truepera
          radiovictrix DSM 17093]
          Length = 78

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +++TE CI  K   CV+VCPV+C YE E+ L IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHIITEPCIGVKDKSCVDVCPVECIYEAEDQLYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
                 +++ N + A
Sbjct: 61 VPSEWASYIQKNYDLA 76


>gi|295396223|ref|ZP_06806404.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970930|gb|EFG46824.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 131

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TY++ + C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 28  TYIIAQPCVDLKDKACVDECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAIYYEDDV 87

Query: 60  EPGLELWLKINSEYAT 75
                 + K N E+  
Sbjct: 88  PEQWAEYYKANVEFFD 103


>gi|310828126|ref|YP_003960483.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612]
 gi|308739860|gb|ADO37520.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612]
          Length = 506

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++VT+NC  C    CV VCPV+  Y  +    I  ++C+ CG C   CP +AI     P
Sbjct: 113 AFMVTDNCRGCLAHPCVSVCPVNAVYMKDGKSHIDKEKCVRCGRCREACPYEAIVKYDRP 172


>gi|331698058|ref|YP_004334297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326952747|gb|AEA26444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 113

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 37/58 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYVVT+ C+      C+E CPVDC YEG+  + I+P ECIDCG CE  CP  A   D
Sbjct: 1  MTYVVTDACVDVLDRSCLEECPVDCIYEGDRKMYINPVECIDCGACEQACPTAAAVAD 58


>gi|260778119|ref|ZP_05887012.1| ferredoxin [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606132|gb|EEX32417.1| ferredoxin [Vibrio coralliilyticus ATCC BAA-450]
          Length = 75

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C  EC  +AI  + E   +   ++++N++ A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVDECDANAIFQEDEVPADQTLYVELNAQLAELWPVQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  EKWNGVPDKL 70


>gi|255527959|ref|ZP_05394800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296188409|ref|ZP_06856800.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255508353|gb|EET84752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296047030|gb|EFG86473.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 368

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C    C +VCP           ++  D+CI CG C   C   AI  D    +
Sbjct: 190 VQNDKCVGC--GQCAKVCPEQAITIENRKASVSHDKCIGCGECMTVCKPKAIGMDWSSEM 247

Query: 64  ELWLKINSEYATQWPNITTKK 84
             +++  +EYA         K
Sbjct: 248 NPFIERLTEYAFGAAKPHENK 268


>gi|126178175|ref|YP_001046140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125860969|gb|ABN56158.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 367

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV  E C  C    C  VCP       +    ++P+ C+ CG C   CP  AI+ D   
Sbjct: 187 PYVEIERCGGC--GKCTTVCPQAAMTLADGRAVLNPEHCVGCGDCMRACPEGAIEFDWTT 244

Query: 62  GLELWLKINSEYA 74
            +  +++   EYA
Sbjct: 245 EIRPFIERLCEYA 257


>gi|289756971|ref|ZP_06516349.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T85]
 gi|289712535|gb|EFD76547.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T85]
          Length = 179

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 17/109 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWP-----NITTKKESLPSAAKMD 94
            AI P+T    E   +++IN+ Y  + P       T+K   +  AA++ 
Sbjct: 59  SAIAPNTRLDFEQLPFVEINASYYPKRPAGVKLAPTSKLAPVTPAAEVR 107


>gi|116754516|ref|YP_843634.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116665967|gb|ABK14994.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 368

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M Y   E C  C    C++ CP       +    I    C+ CG C   C   A+  D  
Sbjct: 189 MVY--KEKCRGC--GRCMKACPRSAISVVDGKAYIDLGVCVGCGECVRACLERAMDFDWA 244

Query: 61  PGLELWLKINSEYA 74
             +  +++   EYA
Sbjct: 245 VAIPPFVERMVEYA 258


>gi|288575184|ref|ZP_06393540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568466|gb|EFC90024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 288

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C+ C    C   CPV           I  D CI CG C   CP  AI  D    +
Sbjct: 148 VDDEKCVGC--GRCFRNCPVKAISMTGGKAVIDKDVCIGCGECLTVCPASAISLDWRTDV 205

Query: 64  ELWLKINSEYA 74
             + +  +EYA
Sbjct: 206 VQFHRRMAEYA 216


>gi|145218852|ref|YP_001129561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205016|gb|ABP36059.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 522

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   CV++CPV+  ++ ++ +       CI C  C   CP +A+  D E
Sbjct: 56  RCNHCEEPPCVDICPVEALHKRDDGIVDFDSRRCIGCKACAQACPYNAVYIDPE 109


>gi|118592808|ref|ZP_01550197.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Stappia aggregata
          IAM 12614]
 gi|118434578|gb|EAV41230.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Stappia aggregata
          IAM 12614]
          Length = 115

 Score = 66.9 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  ++   CI  K   C   CPVDC YEGE    IHP+ECI+CG+CE  CPVDAI+ D E
Sbjct: 1  MALIIKSECIDVKDGICTTSCPVDCIYEGERMFYIHPEECIECGMCESICPVDAIRYDDE 60

Query: 61 --PGLELWLKINSEYAT 75
                 +++IN +   
Sbjct: 61 VTGADRAFVEINKDVFQ 77


>gi|183982996|ref|YP_001851287.1| ferredoxin FdxA_2 [Mycobacterium marinum M]
 gi|183176322|gb|ACC41432.1| ferredoxin FdxA_2 [Mycobacterium marinum M]
          Length = 114

 Score = 66.5 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+   C+      C + CPVDC YEG   + I+PDEC+DCG C+  C V AI    D
Sbjct: 1  MTYVIGRECVDVAEKSCTQECPVDCIYEGARTMYINPDECVDCGACKTTCRVGAIYWEED 60

Query: 59 TEPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGV 96
                  L  N+ +     P       S   A  +  +
Sbjct: 61 LPDEQRHHLADNAAFFREILPGRDAPLGSPGGADTVGRI 99


>gi|262203210|ref|YP_003274418.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia bronchialis DSM 43247]
 gi|262086557|gb|ACY22525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
          bronchialis DSM 43247]
          Length = 108

 Score = 66.5 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ E C+      CVE CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAEPCVDVMDKACVEECPVDCIYEGGRALYIQPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E ++  N+++  
Sbjct: 61 VPDEWEPYVSANADFFD 77


>gi|227487879|ref|ZP_03918195.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542520|ref|ZP_03972569.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092206|gb|EEI27518.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181718|gb|EEI62690.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 107

 Score = 66.5 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + E C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAEPCVDVKDKACVEECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 + + N+ +  
Sbjct: 61 VPDEWIDYNEANAAFFE 77


>gi|183601928|ref|ZP_02963297.1| ferredoxin [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682842|ref|YP_002469225.1| ferredoxin [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190418|ref|YP_002967812.1| ferredoxin [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195824|ref|YP_002969379.1| ferredoxin [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218813|gb|EDT89455.1| ferredoxin [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620492|gb|ACL28649.1| ferredoxin [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248810|gb|ACS45750.1| ferredoxin [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250378|gb|ACS47317.1| ferredoxin [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178141|gb|ADC85387.1| Ferredoxin [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793405|gb|ADG32940.1| ferredoxin [Bifidobacterium animalis subsp. lactis V9]
          Length = 107

 Score = 66.5 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YV+ + C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CP +AI  +  
Sbjct: 1   MAYVIAQPCVDVKDKACVDECPVDCIYEGKRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
             P  E +     E+  +  ++   + + P       V  
Sbjct: 61  LPPEWEWYKDAAVEFFAEVGDLGGAQAAGPIGKDPQRVAD 100


>gi|219852666|ref|YP_002467098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219546925|gb|ACL17375.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 368

 Score = 66.5 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + CI C    C+ VCP       E    I  D CI C  C   CP  AI  D E  +
Sbjct: 190 VVRDLCIGC--QTCLPVCPQQAIGMDEGAALISKDRCIGCFECMTVCPERAIDVDWETDI 247

Query: 64  ELWLKINSEYAT 75
             + +   EYA 
Sbjct: 248 PTFTERMVEYAA 259


>gi|154507672|ref|ZP_02043314.1| hypothetical protein ACTODO_00153 [Actinomyces odontolyticus ATCC
          17982]
 gi|293189345|ref|ZP_06608068.1| ferredoxin [Actinomyces odontolyticus F0309]
 gi|153797306|gb|EDN79726.1| hypothetical protein ACTODO_00153 [Actinomyces odontolyticus ATCC
          17982]
 gi|292821808|gb|EFF80744.1| ferredoxin [Actinomyces odontolyticus F0309]
          Length = 113

 Score = 66.5 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+  K   CV+ CPVDC YEG   L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGARSLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYA 74
                 +L+ N ++ 
Sbjct: 61 LPSEWSDYLRANVDFF 76


>gi|302542741|ref|ZP_07295083.1| ferredoxin [Streptomyces hygroscopicus ATCC 53653]
 gi|302460359|gb|EFL23452.1| ferredoxin [Streptomyces himastatinicus ATCC 53653]
          Length = 136

 Score = 66.5 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 30  TYVIAQPCVDLKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 89

Query: 60  EPGLELWLKINSEYAT 75
               + + K N E+  
Sbjct: 90  PEEWKDYYKANVEFFD 105


>gi|227497862|ref|ZP_03928046.1| possible ferredoxin [Actinomyces urogenitalis DSM 15434]
 gi|226832711|gb|EEH65094.1| possible ferredoxin [Actinomyces urogenitalis DSM 15434]
          Length = 117

 Score = 66.5 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYA 74
                 + + N ++ 
Sbjct: 61 VPEEWSDYTRANIDFF 76


>gi|325121599|gb|ADY81122.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus PHEA-2]
          Length = 74

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           I+PDECIDC +CEPECP +AI  + E   G E+++++N+E + +WPNIT   +      +
Sbjct: 2   INPDECIDCALCEPECPANAIFSEDELPEGQEVFIELNAELSQKWPNITQIGDQPADREE 61

Query: 93  MDGVKQKYE 101
            +G   K +
Sbjct: 62  WNGKPDKLQ 70


>gi|325002600|ref|ZP_08123712.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Pseudonocardia
          sp. P1]
          Length = 108

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDLLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 + K N ++  
Sbjct: 61 VPDQWAAYTKANVDFFD 77


>gi|312138771|ref|YP_004006107.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|311888110|emb|CBH47422.1| putative ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
          Length = 470

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          M +V+  +C  CK   CV VCP +C +             L I PD CIDC  C   CP 
Sbjct: 1  MAHVILGHC--CKDASCVRVCPQNCIHPAPGEDGFASTETLYIDPDSCIDCTACVDACPA 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITT 82
           A+K +    P    +   N E+  Q P  T 
Sbjct: 59 SAVKSEHALTPAELPYAARNREFFAQAPAATR 90


>gi|308234735|ref|ZP_07665472.1| putative ferredoxin 1 [Gardnerella vaginalis ATCC 14018]
 gi|311115179|ref|YP_003986400.1| ferredoxin [Gardnerella vaginalis ATCC 14019]
 gi|310946673|gb|ADP39377.1| ferredoxin [Gardnerella vaginalis ATCC 14019]
          Length = 106

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSA 90
               E +     EY  +  ++   +E+ PS 
Sbjct: 61 VPEEWEWYKDAAIEYFNKLGDLGGAQEAGPSG 92


>gi|226357256|ref|YP_002786996.1| ferredoxin [Deinococcus deserti VCD115]
 gi|226319246|gb|ACO47242.1| putative ferredoxin [Deinococcus deserti VCD115]
          Length = 78

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+   CI  K   C EVCPV+C Y+      IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVIVSPCIGTKDQACTEVCPVECIYDAGEMFLIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
             G E ++  N E+ 
Sbjct: 61 VPAGEESFIARNREHF 76


>gi|17942775|pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
          Ferredoxins: High Resolution Crystal Structure Of The
          Seven-Iron Ferredoxin From Thermus Thermophilus
          Length = 78

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D 
Sbjct: 1  PHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEEDV 60

Query: 60 EPGLELWLKINSEYA 74
              + +++ N + A
Sbjct: 61 PEQWKSYIEKNRKLA 75


>gi|317122522|ref|YP_004102525.1| ferredoxin [Thermaerobacter marianensis DSM 12885]
 gi|315592502|gb|ADU51798.1| ferredoxin [Thermaerobacter marianensis DSM 12885]
          Length = 82

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CVEVCPVDC YEGE+   IHP+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCVGTKDQSCVEVCPVDCIYEGEDQFFIHPEECIGCSACAAVCPVEAIYDEDE 60

Query: 61 --PGLELWLKINSEYAT 75
               E + +   ++  
Sbjct: 61 VPEQWEHYKEKARKFFE 77


>gi|300781508|ref|ZP_07091362.1| ferredoxin [Corynebacterium genitalium ATCC 33030]
 gi|300533215|gb|EFK54276.1| ferredoxin [Corynebacterium genitalium ATCC 33030]
          Length = 107

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ E C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAEPCVDLLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N  +  
Sbjct: 61 LPEEWNDYYDANVAFFD 77


>gi|119977|sp|P03941|FER_ALIAC RecName: Full=Ferredoxin
          Length = 78

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           +V+T  CI  K  DCVE CPVD  +EG +   I PD CIDC  CEP CPV+AI  +   
Sbjct: 1  PFVITSPCIGEKAADCVETCPVDAIHEGPDQYYIDPDLCIDCAACEPVCPVNAIYQEEFV 60

Query: 60 EPGLELWLKINSEYATQ 76
              + +++ N  +   
Sbjct: 61 PEDEKEFIEKNRNFFRN 77


>gi|325676533|ref|ZP_08156211.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707]
 gi|325552711|gb|EGD22395.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707]
          Length = 470

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          M +V+  +C  CK   CV VCP +C +             L I PD CIDC  C   CP 
Sbjct: 1  MAHVILGHC--CKDASCVRVCPQNCIHPAPGEDGFASTETLYIDPDSCIDCTACVDACPA 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITT 82
           A+K +    P    +   N E+  Q P  T 
Sbjct: 59 SAVKSEHALTPAELPYAARNREFFAQAPAATR 90


>gi|312138850|ref|YP_004006186.1| ferredoxin [Rhodococcus equi 103S]
 gi|325676447|ref|ZP_08156125.1| ferredoxin [Rhodococcus equi ATCC 33707]
 gi|311888189|emb|CBH47501.1| putative ferredoxin [Rhodococcus equi 103S]
 gi|325552625|gb|EGD22309.1| ferredoxin [Rhodococcus equi ATCC 33707]
          Length = 107

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 ++  N ++            S   AAK+  V
Sbjct: 61 VPDQWNGYVAANVDFFDDL-------GSPGGAAKLGKV 91


>gi|315226089|ref|ZP_07867877.1| ferredoxin [Parascardovia denticolens DSM 10105]
 gi|315120221|gb|EFT83353.1| ferredoxin [Parascardovia denticolens DSM 10105]
          Length = 119

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CV+ CPVDC YE    L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 12 MAYVIAEPCVDVKDKACVDECPVDCIYEAPRTLYINPNECVDCGACEPVCPTEAIFYEDD 71

Query: 61 PGLEL-WLKINSEYA 74
             E  W K  +E  
Sbjct: 72 LPDEWVWYKDAAESF 86


>gi|325284128|ref|YP_004256669.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
 gi|324315937|gb|ADY27052.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
          Length = 78

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFLIHPDECIDCGACVPACPVNAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
                 ++  N+ + 
Sbjct: 61 VPADETPFIAKNAAFF 76


>gi|111022909|ref|YP_705881.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226365417|ref|YP_002783200.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|110822439|gb|ABG97723.1| possible ferredoxin [Rhodococcus jostii RHA1]
 gi|226243907|dbj|BAH54255.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 107

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M Y + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYTIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 ++  N ++            S   AAK+  V
Sbjct: 61 VPDQWNGYIAANVDFFDDL-------GSPGGAAKLGKV 91


>gi|148273357|ref|YP_001222918.1| hypothetical protein CMM_2173 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147831287|emb|CAN02243.1| fdxB [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 106

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N E+  
Sbjct: 61 LPEKWSDYYTANVEFFA 77


>gi|19552328|ref|NP_600330.1| ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|62389992|ref|YP_225394.1| ferredoxin [Corynebacterium glutamicum ATCC 13032]
 gi|145295244|ref|YP_001138065.1| hypothetical protein cgR_1185 [Corynebacterium glutamicum R]
 gi|21323869|dbj|BAB98495.1| Ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|41325328|emb|CAF19808.1| FERREDOXIN [Corynebacterium glutamicum ATCC 13032]
 gi|140845164|dbj|BAF54163.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 105

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYED- 59

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
             + WL  N   A  + ++     S   AAK
Sbjct: 60 DVPDEWLDYNDANAAFFDDL----GSPGGAAK 87


>gi|170782550|ref|YP_001710883.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157119|emb|CAQ02298.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
          Length = 106

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N E+  
Sbjct: 61 LPEKWSDYYTANVEFFA 77


>gi|108804037|ref|YP_643974.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108765280|gb|ABG04162.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 87

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+TE CI  K+T CV VCPVDC Y+  +   I+P+ECIDC +C P+CPV+AI P   
Sbjct: 1  MAYVITEACIGTKNTACVAVCPVDCIYDAGDQYVINPEECIDCSMCMPQCPVEAIYPGDQ 60

Query: 60 -EPGLELWLKINSEY 73
              L  + K  ++ 
Sbjct: 61 VPDDLRHYAKKAADL 75


>gi|327537530|gb|EGF24249.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Rhodopirellula baltica WH47]
          Length = 84

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT VVT+ CI CK   C+ VCP DCF+E E  + I+PD+C+DC  C PECP +AI    D
Sbjct: 1  MTMVVTQPCIGCKDKACLTVCPADCFHEDEQMVYINPDDCVDCEACIPECPTEAIFGEDD 60

Query: 59 TEPGLELWLKINSEYATQWPN 79
               + ++ +N+  A   P 
Sbjct: 61 VPEQWKDFIALNAIKADACPP 81


>gi|126641295|ref|YP_001084279.1| 7-Fe ferredoxin [Acinetobacter baumannii ATCC 17978]
 gi|213156378|ref|YP_002318798.1| ferredoxin-1 [Acinetobacter baumannii AB0057]
 gi|215483972|ref|YP_002326197.1| Ferredoxin 1 [Acinetobacter baumannii AB307-0294]
 gi|213055538|gb|ACJ40440.1| ferredoxin-1 [Acinetobacter baumannii AB0057]
 gi|213987413|gb|ACJ57712.1| Ferredoxin 1 [Acinetobacter baumannii AB307-0294]
 gi|322507872|gb|ADX03326.1| fdxA [Acinetobacter baumannii 1656-2]
 gi|323517469|gb|ADX91850.1| ferredoxin [Acinetobacter baumannii TCDC-AB0715]
          Length = 74

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           I+PDECIDC +CEPECP +AI  + E   G E+++++N+E + +WPNIT   E      +
Sbjct: 2   INPDECIDCALCEPECPANAIFSEDELPEGQEVFIELNAELSQKWPNITQIGEQPADREE 61

Query: 93  MDGVKQKYE 101
            +G   K +
Sbjct: 62  WNGKPDKLQ 70


>gi|148359470|ref|YP_001250677.1| ferredoxin I [Legionella pneumophila str. Corby]
 gi|148281243|gb|ABQ55331.1| ferredoxin I [Legionella pneumophila str. Corby]
          Length = 78

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           IHPDECIDC +CEPECPV+AI  + +     + + ++N+E +  WPNIT KK++   A  
Sbjct: 2   IHPDECIDCALCEPECPVNAIVSEDDLTDEQQQFKELNAELSKTWPNITAKKDAPSDAKD 61

Query: 93  MDGVKQKYEKYFSP 106
            + VK K +     
Sbjct: 62  WEEVKDKLQYLQKE 75


>gi|299143936|ref|ZP_07037016.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518421|gb|EFI42160.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 498

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 29/60 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           TY VT+NC  C    C  VCPV+      N   I   +CI CG C+  CP +AI     P
Sbjct: 112 TYYVTDNCRKCMAHPCTNVCPVNAVTIERNRAHIDTTKCIKCGRCKETCPYNAIVMYDRP 171



 Score = 41.9 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
            ++ T  CI C    C E CP +     +                     I  DEC+ CG
Sbjct: 143 AHIDTTKCIKC--GRCKETCPYNAIVMYDRPCAAACGVNAIGSDEYGRAEIDHDECVACG 200

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 201 RCIASCPFGAI 211


>gi|332973090|gb|EGK11025.1| ferredoxin [Desmospora sp. 8437]
          Length = 77

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +V+T  C   K  +CVEVCPVDC +  E    I PD CI+CG CEP CPV+AI  +  
Sbjct: 1  MAFVITSACKDEKAAECVEVCPVDCIHGDEVMYYIDPDTCIECGACEPVCPVEAIYEEDM 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +++IN+ +  
Sbjct: 61 VPEEEKEYIQINANFFK 77


>gi|260905761|ref|ZP_05914083.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
           BL2]
          Length = 108

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ + C+  K   C++ CPVDC YEG   L IHP+EC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAQPCVDLKDRACIDECPVDCIYEGSRSLYIHPEECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                E +   N ++            S   AA   G+      + +  P  
Sbjct: 61  VPDEWEAYYSANVDFFDT-------IGSPGGAAAH-GIIDGDHPFIAALPPQ 104


>gi|148271844|ref|YP_001221405.1| hypothetical protein CMM_0665 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147829774|emb|CAN00693.1| fdxA [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 108

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N E+  
Sbjct: 61 LPEKWSDYYTANVEFFA 77


>gi|121535881|ref|ZP_01667679.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305546|gb|EAX46490.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 368

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C    C  VCP +     +   +I  D+CI CG C   CPV A+  D    L
Sbjct: 190 VDQAKCIGC--AKCAAVCPENAITVSDKKASIAVDKCIGCGECLTVCPVKAVGMDWATDL 247

Query: 64  ELWLKINSEYATQWPNITTKK 84
            ++L+  +EYA  +     K+
Sbjct: 248 AVFLERMTEYAYGFAKAHEKR 268


>gi|307610629|emb|CBX00217.1| hypothetical protein LPW_19621 [Legionella pneumophila 130b]
          Length = 78

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           IHPDECIDC +CEPECPV+AI  + +     + + ++N+E +  WPNIT KK++   A  
Sbjct: 2   IHPDECIDCALCEPECPVNAIVSEDDLTEEQQQFKELNAELSKTWPNITAKKDAPSDAKD 61

Query: 93  MDGVKQKYEKYFSP 106
            + VK K +     
Sbjct: 62  WEEVKDKLQYLQKE 75


>gi|28493542|ref|NP_787703.1| ferredoxin [Tropheryma whipplei str. Twist]
 gi|28572347|ref|NP_789127.1| ferredoxin [Tropheryma whipplei TW08/27]
 gi|28410478|emb|CAD66864.1| ferredoxin [Tropheryma whipplei TW08/27]
 gi|28476584|gb|AAO44672.1| ferredoxin [Tropheryma whipplei str. Twist]
          Length = 108

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   C++ CPVDC YEG   L I+PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAFPCVDLKDRACIDECPVDCIYEGGRSLYINPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 + + N E+  +         S   AAK+  V
Sbjct: 61 LPEEWGEYYRANVEFFDE-------IGSPGGAAKLGPV 91


>gi|120029|sp|P13279|FER_STRGR RecName: Full=Ferredoxin
          Length = 105

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
          TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 1  TYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 60

Query: 60 EPGLELWLKINSEYAT 75
              + + K N E+  
Sbjct: 61 PEEWKDYYKANVEFFD 76


>gi|119717157|ref|YP_924122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119537818|gb|ABL82435.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 505

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C    CV++CP    ++ E+ +     + CI C  C   CP DAI  D E  
Sbjct: 56  RCNHCTDAPCVKICPTQALFKREDGIVDFDNERCIGCKSCMQACPYDAIYIDAETH 111



 Score = 41.1 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 17/63 (26%), Gaps = 9/63 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAIK 56
              E CI CK   C++ CP D  Y                         C   CP  +I 
Sbjct: 84  FDNERCIGCK--SCMQACPYDAIYIDAETHTAAKCNMCAHRVDEGLEPACVVVCPTHSIW 141

Query: 57  PDT 59
              
Sbjct: 142 VGD 144


>gi|154150339|ref|YP_001403957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153998891|gb|ABS55314.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 368

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C EVCP            I  D CI C  C   CPV AI+ D E  + L+ +
Sbjct: 195 CTGC--GKCTEVCPKSAITLRNKKSVIDKDLCIGCFECMTVCPVHAIEVDWETEIPLFTE 252

Query: 69  INSEYA 74
              EYA
Sbjct: 253 RMVEYA 258


>gi|237785229|ref|YP_002905934.1| Ferredoxin [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758141|gb|ACR17391.1| Ferredoxin [Corynebacterium kroppenstedtii DSM 44385]
          Length = 105

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M Y + E C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYTIAEPCVDVKDKACVEECPVDCIYEGVRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N+ +  
Sbjct: 61 VPDEWIDYNDANAAFFD 77


>gi|38233568|ref|NP_939335.1| ferredoxin [Corynebacterium diphtheriae NCTC 13129]
 gi|38199828|emb|CAE49491.1| ferredoxin [Corynebacterium diphtheriae]
          Length = 105

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYED- 59

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
             + W+  N   A  + ++     S   AAK
Sbjct: 60 DVPDEWIDYNDANAAFFDSL----GSPGGAAK 87


>gi|311740712|ref|ZP_07714539.1| ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304232|gb|EFQ80308.1| ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 107

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDIMDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N+ +  
Sbjct: 61 VPDEWLDYNDANAAFFD 77


>gi|172040342|ref|YP_001800056.1| hypothetical protein cur_0662 [Corynebacterium urealyticum DSM
          7109]
 gi|171851646|emb|CAQ04622.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 105

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+A+  +  
Sbjct: 1  MTYTIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAVFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E +   N+ +  
Sbjct: 61 IPEEWEEYNDANAAFFD 77


>gi|255654361|ref|ZP_05399770.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-23m63]
 gi|296452648|ref|ZP_06894341.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP08]
 gi|296880940|ref|ZP_06904887.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP07]
 gi|296258529|gb|EFH05431.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP08]
 gi|296428053|gb|EFH13953.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP07]
          Length = 357

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VV E  CI C    CV  CP       +    I  D C  CG C   CP  A+    E  
Sbjct: 191 VVKEKKCIGC--GKCVNSCPTKAISIVDKKAVIDSDVCYGCGECPTVCPTRAVTIQWESD 248

Query: 63  LELWLKINSEYA 74
            +++++  +EYA
Sbjct: 249 SDVFVEKMAEYA 260


>gi|300858189|ref|YP_003783172.1| ferredoxin [Corynebacterium pseudotuberculosis FRC41]
 gi|300685643|gb|ADK28565.1| Ferredoxin [Corynebacterium pseudotuberculosis FRC41]
 gi|302205911|gb|ADL10253.1| ferredoxin [Corynebacterium pseudotuberculosis C231]
 gi|302330467|gb|ADL20661.1| ferredoxin [Corynebacterium pseudotuberculosis 1002]
 gi|308276146|gb|ADO26045.1| ferredoxin [Corynebacterium pseudotuberculosis I19]
          Length = 105

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 6/110 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYED- 59

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
              + WL  N   A  + ++     S   AAK+ G +    K  +  P  
Sbjct: 60  DVPDEWLDYNDANAAFFDDL----GSPGGAAKL-GPQDFDAKLVADLPPQ 104


>gi|225872601|ref|YP_002754056.1| iron-sulfur cluster-binding protein [Acidobacterium capsulatum
          ATCC 51196]
 gi|225791610|gb|ACO31700.1| iron-sulfur cluster-binding protein [Acidobacterium capsulatum
          ATCC 51196]
          Length = 86

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +             L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDEGTYGDAEQLYIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D     + +   N+E+ 
Sbjct: 61 SAIFAIDDLPEKWQNFATKNAEHF 84


>gi|227832808|ref|YP_002834515.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|255324435|ref|ZP_05365552.1| ferredoxin [Corynebacterium tuberculostearicum SK141]
 gi|262182703|ref|ZP_06042124.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|227453824|gb|ACP32577.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|255298341|gb|EET77641.1| ferredoxin [Corynebacterium tuberculostearicum SK141]
          Length = 107

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVMDRGCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N+ +  
Sbjct: 61 VPDEWLDYNDANAAFFD 77


>gi|20806703|ref|NP_621874.1| uncharacterized Fe-S center protein [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515157|gb|AAM23478.1| uncharacterized Fe-S center protein [Thermoanaerobacter
           tengcongensis MB4]
          Length = 372

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV           I    CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVGAISLVNGSAYIDHSICIGCGECVSMCQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFIERMTEYA 258


>gi|317125936|ref|YP_004100048.1| polysulphide reductase NrfD [Intrasporangium calvum DSM 43043]
 gi|315590024|gb|ADU49321.1| Polysulphide reductase NrfD [Intrasporangium calvum DSM 43043]
          Length = 508

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C    CV++CP    ++ ++ +     D CI C  C   CP DAI  D
Sbjct: 56  RCNHCTDAPCVKICPTQALFKRDDGIVDFDGDRCIGCKSCMQACPYDAIYID 107



 Score = 41.5 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 9/63 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAIK 56
              + CI CK   C++ CP D  Y   N                     C   CP  +I 
Sbjct: 84  FDGDRCIGCK--SCMQACPYDAIYIDANTHTAAKCNLCAHRVDEGMEPACVVVCPTHSIW 141

Query: 57  PDT 59
              
Sbjct: 142 VGD 144


>gi|167038468|ref|YP_001666046.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116862|ref|YP_004187021.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166857302|gb|ABY95710.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929953|gb|ADV80638.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 372

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+      +   I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNSSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|300933568|ref|ZP_07148824.1| Ferredoxin [Corynebacterium resistens DSM 45100]
          Length = 107

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYED- 59

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
             + W + N+  A  + ++     S   AAKM
Sbjct: 60 DIPDEWEEYNAANAAFFDDL----GSPGGAAKM 88


>gi|78189918|ref|YP_380256.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium
           chlorochromatii CaD3]
 gi|78172117|gb|ABB29213.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chlorobium chlorochromatii CaD3]
          Length = 517

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C    CV++CPV+  ++ E+ +       CI C  C   CP  A+  D E  
Sbjct: 56  RCNHCAEPPCVDICPVEALHKREDGIVDFDKRRCIGCKACAQACPYGALYIDPETH 111



 Score = 37.3 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 13/71 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---------CEPECPVDAIKPD 58
            CI CK   C + CP    Y           +C  C           C   CP  AI   
Sbjct: 88  RCIGCK--ACAQACPYGALYIDPETHT--SAKCNYCAHRKEVGMKPACVVICPQQAIVSG 143

Query: 59  TEPGLELWLKI 69
                   + I
Sbjct: 144 DFDDPNSAVSI 154


>gi|169628420|ref|YP_001702069.1| ferredoxin FdxC [Mycobacterium abscessus ATCC 19977]
 gi|169240387|emb|CAM61415.1| Probable ferredoxin FdxC [Mycobacterium abscessus]
          Length = 123

 Score = 65.0 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
          TY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 17 TYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDDV 76

Query: 60 EPGLELWLKINSEYA 74
                +++ N+++ 
Sbjct: 77 PDQWTGYIQSNADFF 91


>gi|108804033|ref|YP_643970.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108765276|gb|ABG04158.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 79

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+TE CI  K   CVEV PVDC  +      I+P+ECIDCG CEPEC V+AI P+ E
Sbjct: 1  MPYVITEPCIGTKDQSCVEVYPVDCICDAGEQFMINPEECIDCGACEPECTVEAIYPEDE 60

Query: 61 --PGLELWLKINSEYA 74
              ++ ++    E+ 
Sbjct: 61 VPEDMQQYITKAQEFF 76


>gi|294811298|ref|ZP_06769941.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|326439851|ref|ZP_08214585.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294323897|gb|EFG05540.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
          Length = 108

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + E
Sbjct: 1  MAYVIAQPCVDVKDRACIEECPVDCIYEGPRKLYIHPDECVDCGACEPVCPVEAIFYEDE 60

Query: 61 PGLEL 65
            +E 
Sbjct: 61 VPVEW 65


>gi|300814458|ref|ZP_07094720.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511428|gb|EFK38666.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 505

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT NC  C    C+ VCPV+    G++   I  ++CI CG C   CP +AI     P
Sbjct: 112 SYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKEKCIRCGRCHEACPYNAIVMYDRP 171



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           T +  E CI C    C E CP +     +                     I  D+C+ CG
Sbjct: 143 TIIDKEKCIRC--GRCHEACPYNAIVMYDRPCAAVCGVKAIGSDDFDRADIDQDKCVACG 200

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 201 RCIATCPFGAI 211


>gi|256751333|ref|ZP_05492212.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749715|gb|EEU62740.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 372

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|307265233|ref|ZP_07546791.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919677|gb|EFN49893.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 513

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VTE C  C    C+EVCP       +    I  D+CI+CG C+  CP +AI
Sbjct: 100 YRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNAI 152


>gi|294790482|ref|ZP_06755640.1| ferredoxin [Scardovia inopinata F0304]
 gi|294458379|gb|EFG26732.1| ferredoxin [Scardovia inopinata F0304]
          Length = 111

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CVE CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MAYVIAEPCVDVKDKACVEECPVDCIYEGPRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 -PGLELWLK 68
           P    W K
Sbjct: 61 LPDDWAWYK 69


>gi|15922102|ref|NP_377771.1| anaerobic dimethyl sulfoxide reductase [Sulfolobus tokodaii str. 7]
 gi|15622890|dbj|BAB66880.1| 391aa long hypothetical anaerobic dimethyl sulfoxide reductase
           [Sulfolobus tokodaii str. 7]
          Length = 391

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C  C++  C++VCP +  ++ +  +  I+ +ECI CG C+  CP +  K + E  +
Sbjct: 47  ISIACNHCENPLCMKVCPANAIHKDDMGIVYINGNECIGCGYCQWACPYEEPKFNHEGIM 106

Query: 64  EL 65
             
Sbjct: 107 TK 108


>gi|282883119|ref|ZP_06291718.1| Fe-hydrogenase large subunit family protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281296931|gb|EFA89428.1| Fe-hydrogenase large subunit family protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 505

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT NC  C    C+ VCPV+    G++   I  D+CI CG C   CP +AI     P
Sbjct: 112 SYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKDKCIRCGRCHEACPYNAIVMYDRP 171



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           T +  + CI C    C E CP +     +                     I  D+C+ CG
Sbjct: 143 TIIDKDKCIRC--GRCHEACPYNAIVMYDRPCAAVCGVKAIGSDDFDRADIDQDKCVACG 200

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 201 RCIATCPFGAI 211


>gi|194332908|ref|YP_002014768.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194310726|gb|ACF45121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 515

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C+   CV +CPV+   + E+ +       CI C  C   CP  A+  D E  
Sbjct: 56  RCNHCEDPPCVNICPVEALQKREDGIVDFDKRRCIGCKACGQACPYGALYIDPESH 111



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 17/57 (29%), Gaps = 13/57 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---------CEPECPVDAI 55
            CI CK   C + CP    Y           +C  C           C   CP  AI
Sbjct: 88  RCIGCK--ACGQACPYGALYIDPESHT--SAKCNYCAHRKEVGMKPACVVICPQQAI 140


>gi|153005898|ref|YP_001380223.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029471|gb|ABS27239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 744

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C   CPV   ++ +    +    +CI C  C   CP      + +
Sbjct: 78  CMHCDEPACASACPVTAIHKTKEGPVVYDESKCIGCRYCMWACPWGVPMAEWD 130


>gi|297544478|ref|YP_003676780.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842253|gb|ADH60769.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 506

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VTE C  C    C+EVCP       +    I  D+CI+CG C+  CP +AI
Sbjct: 100 YRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNAI 152


>gi|167038788|ref|YP_001661773.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|300913627|ref|ZP_07130944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307723358|ref|YP_003903109.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|166853028|gb|ABY91437.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X514]
 gi|300890312|gb|EFK85457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307580419|gb|ADN53818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X513]
          Length = 372

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|326389280|ref|ZP_08210848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994643|gb|EGD53067.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 372

 Score = 64.6 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|289577411|ref|YP_003476038.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
 gi|289527124|gb|ADD01476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
          Length = 372

 Score = 64.6 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|323968658|gb|EGB64063.1| DMSO reductase anchor subunit protein [Escherichia coli M863]
 gi|327252703|gb|EGE64357.1| dimethylsulfoxide reductase, chain B [Escherichia coli STEC_7v]
          Length = 489

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|297543698|ref|YP_003676000.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841473|gb|ADH59989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 372

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|227503767|ref|ZP_03933816.1| ferredoxin [Corynebacterium striatum ATCC 6940]
 gi|227199591|gb|EEI79639.1| ferredoxin [Corynebacterium striatum ATCC 6940]
          Length = 107

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N+ +  
Sbjct: 61 VPDEWIDYNDANAAFFD 77


>gi|294786512|ref|ZP_06751766.1| ferredoxin [Parascardovia denticolens F0305]
 gi|294485345|gb|EFG32979.1| ferredoxin [Parascardovia denticolens F0305]
          Length = 108

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CV+ CPVDC YE    L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MAYVIAEPCVDVKDKACVDECPVDCIYEAPRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL-WLKINSEYA 74
             E  W K  +E  
Sbjct: 61 LPDEWVWYKDAAESF 75


>gi|224371231|ref|YP_002605395.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693948|gb|ACN17231.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 384

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+ CPV      ++   I+P+ CI CG C   CP  ++       + ++L+
Sbjct: 196 CIGC--GACVDNCPVKAITLEDDKATINPEVCIGCGECIIRCPTGSVNIRWNQTIPVFLE 253

Query: 69  INSEYATQWPNITTKKE 85
              EY      I+ K++
Sbjct: 254 KMMEYTKG--VISGKED 268


>gi|119960623|ref|YP_946862.1| ferredoxin [Arthrobacter aurescens TC1]
 gi|119947482|gb|ABM06393.1| ferredoxin [Arthrobacter aurescens TC1]
          Length = 106

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M+YV+ + C+  K   C++ CPVDC YEG+  L IHP EC+DCG C+P CPV+AI    D
Sbjct: 1  MSYVIAQPCVDVKDRACIQECPVDCIYEGDRSLYIHPSECVDCGACDPVCPVEAIYYADD 60

Query: 59 TEPGLELWLKINSEYAT 75
                 ++  + E+  
Sbjct: 61 VPDEWADYVMASVEFFE 77


>gi|154486719|ref|ZP_02028126.1| hypothetical protein BIFADO_00543 [Bifidobacterium adolescentis
          L2-32]
 gi|154084582|gb|EDN83627.1| hypothetical protein BIFADO_00543 [Bifidobacterium adolescentis
          L2-32]
          Length = 106

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVV + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVVAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|310288040|ref|YP_003939299.1| Ferredoxin [Bifidobacterium bifidum S17]
 gi|309251977|gb|ADO53725.1| Ferredoxin [Bifidobacterium bifidum S17]
          Length = 107

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|291457166|ref|ZP_06596556.1| ferredoxin [Bifidobacterium breve DSM 20213]
 gi|291381001|gb|EFE88519.1| ferredoxin [Bifidobacterium breve DSM 20213]
          Length = 106

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|229818391|ref|ZP_04448672.1| hypothetical protein BIFANG_03696 [Bifidobacterium angulatum DSM
          20098]
 gi|229784261|gb|EEP20375.1| hypothetical protein BIFANG_03696 [Bifidobacterium angulatum DSM
          20098]
          Length = 111

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 7  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 66

Query: 61 PGLEL 65
             E 
Sbjct: 67 LPDEW 71


>gi|158318907|ref|YP_001511415.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Frankia sp. EAN1pec]
 gi|158114312|gb|ABW16509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EAN1pec]
          Length = 112

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKP 57
           M +V+T  CI  K   C+   CP DC YEG   + I+PDEC +CG C   CPV A  I  
Sbjct: 1   MPFVITSACIDVKDGACLGGGCPADCIYEGNRKMYINPDECTECGACAVACPVGAAMIDE 60

Query: 58  DTEPGLELWLKINS-EYATQWPNITTKKESLPSAAKMDGV 96
                 + ++K     ++   P           AA++  +
Sbjct: 61  MVPDEEQDFIKSEELFFSEVLPGRDEPLGEPGGAAEVGKI 100


>gi|229008434|ref|ZP_04165889.1| Ferredoxin [Bacillus mycoides Rock1-4]
 gi|228752827|gb|EEM02400.1| Ferredoxin [Bacillus mycoides Rock1-4]
          Length = 78

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+T  CI  K  DCV+VCPV+C   G +   I+P  CIDCG CE  CPV+AI  + E
Sbjct: 1  MAFVITSPCISEKAADCVDVCPVNCIELGSDQYFINPALCIDCGACETACPVEAIYYEDE 60

Query: 61 --PGLELWLKINSEYA 74
               +++ +   +Y 
Sbjct: 61 LLDEDQIFFEKAKKYF 76


>gi|171741293|ref|ZP_02917100.1| hypothetical protein BIFDEN_00369 [Bifidobacterium dentium ATCC
          27678]
 gi|283455347|ref|YP_003359911.1| fdxC Ferredoxin [Bifidobacterium dentium Bd1]
 gi|306823586|ref|ZP_07456961.1| ferredoxin [Bifidobacterium dentium ATCC 27679]
 gi|309803019|ref|ZP_07697120.1| ferredoxin [Bifidobacterium dentium JCVIHMP022]
 gi|171276907|gb|EDT44568.1| hypothetical protein BIFDEN_00369 [Bifidobacterium dentium ATCC
          27678]
 gi|283101981|gb|ADB09087.1| fdxC Ferredoxin [Bifidobacterium dentium Bd1]
 gi|304553293|gb|EFM41205.1| ferredoxin [Bifidobacterium dentium ATCC 27679]
 gi|308220486|gb|EFO76797.1| ferredoxin [Bifidobacterium dentium JCVIHMP022]
          Length = 106

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|117164510|emb|CAJ88056.1| putative ferredoxin reductase [Streptomyces ambofaciens ATCC
          23877]
          Length = 510

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C               L I P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CSDATCVSVCPVNCIRPTPEEQAFGSTEMLHIDPKTCIDCGACADACPV 58

Query: 53 DAIKPDTE--PGLELWLKIN 70
          DAI P      G   +  +N
Sbjct: 59 DAIFPVESLTAGQREYADMN 78


>gi|146303090|ref|YP_001190406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701340|gb|ABP94482.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 404

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C +  C++ CP     + E  +  I  ++CI CG C+  CP +A+    +  +  
Sbjct: 58  SCNHCDNPVCMKSCPAVAISKNEMGIVTIDSNKCIGCGYCQWACPYEALHFSKDGTMGK 116



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI-----DCGVCEPECPVDAI--- 55
           + +  CI C +  C   CP +  +  ++        C+         C   CP  A+   
Sbjct: 86  IDSNKCIGCGY--CQWACPYEALHFSKDGTMGKCHLCVDRLGKGMPYCVESCPTGALTFG 143

Query: 56  KPDTEPGLELWLK 68
             D   G   +L 
Sbjct: 144 WLDRPDGEVNYLA 156


>gi|296138878|ref|YP_003646121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
 gi|296027012|gb|ADG77782.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
          Length = 108

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + E C+      C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAEPCVDVLDKACIEECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYA 74
                 ++  N ++ 
Sbjct: 61 VPDEWSEYVTANIDFF 76


>gi|149925530|ref|ZP_01913794.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149825647|gb|EDM84855.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 80

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           I+P+ CIDCGVC PECP  AI  +       + +++IN+  A QWP I + KE L  A  
Sbjct: 2   INPEGCIDCGVCIPECPASAIFEEDNVPADQQEFIEINARLAQQWPVIDSAKEPLADADA 61

Query: 93  MDGVKQKYE 101
              V  K +
Sbjct: 62  WVDVTNKKQ 70


>gi|108804450|ref|YP_644387.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765693|gb|ABG04575.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 531

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            + V   C  C+   CVE CPV   Y  E+ +   + D CI C  C   CP DA+  D E
Sbjct: 52  AFHVM-RCNHCEDAPCVEACPVTALYVREDGIVDFNWDRCIGCKACTQACPYDALYIDPE 110

Query: 61  PG 62
             
Sbjct: 111 SH 112



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 17/64 (26%), Gaps = 9/64 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIKPDT 59
           + CI CK   C + CP D  Y                 V       C   CP  AI    
Sbjct: 88  DRCIGCK--ACTQACPYDALYIDPESHTAAKCNYCAHRVDMGLEPACVNVCPEQAIISGD 145

Query: 60  EPGL 63
               
Sbjct: 146 MDDP 149


>gi|313205384|ref|YP_004044041.1| 4fe-4S ferredoxin iroN-sulfur binding domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444700|gb|ADQ81056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Paludibacter
           propionicigenes WB4]
          Length = 321

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y + + C  C +  CV VCPVD  ++ ++ +  I  + CI C  C   CP  A   +  
Sbjct: 139 AYYMPKPCQHCDNPPCVAVCPVDATFKRQDGIVLIDNERCIGCRFCIAACPYSARIFNWA 198

Query: 61  PGLE 64
             ++
Sbjct: 199 EPIK 202


>gi|224283694|ref|ZP_03647016.1| Ferredoxin [Bifidobacterium bifidum NCIMB 41171]
 gi|311064916|ref|YP_003971642.1| ferredoxin [Bifidobacterium bifidum PRL2010]
 gi|313140850|ref|ZP_07803043.1| ferredoxin [Bifidobacterium bifidum NCIMB 41171]
 gi|310867236|gb|ADP36605.1| FdxC Ferredoxin [Bifidobacterium bifidum PRL2010]
 gi|313133360|gb|EFR50977.1| ferredoxin [Bifidobacterium bifidum NCIMB 41171]
          Length = 107

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|23466115|ref|NP_696718.1| ferredoxin [Bifidobacterium longum NCC2705]
 gi|189440546|ref|YP_001955627.1| Ferredoxin [Bifidobacterium longum DJO10A]
 gi|227546453|ref|ZP_03976502.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239620993|ref|ZP_04664024.1| ferredoxin [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296454888|ref|YP_003662032.1| 4Fe-4S ferredoxin, iron-sulfur-binding domain-containing protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|312133853|ref|YP_004001192.1| ferredoxin [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483015|ref|ZP_07942017.1| 4Fe-4S binding domain-containing protein [Bifidobacterium sp.
          12_1_47BFAA]
 gi|322689945|ref|YP_004209679.1| ferredoxin [Bifidobacterium longum subsp. infantis 157F]
 gi|322691886|ref|YP_004221456.1| ferredoxin [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326849|gb|AAN25354.1| ferredoxin [Bifidobacterium longum NCC2705]
 gi|189428981|gb|ACD99129.1| Ferredoxin [Bifidobacterium longum DJO10A]
 gi|227213110|gb|EEI80989.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239516094|gb|EEQ55961.1| ferredoxin [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296184320|gb|ADH01202.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|311773144|gb|ADQ02632.1| Ferredoxin [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915516|gb|EFV36936.1| 4Fe-4S binding domain-containing protein [Bifidobacterium sp.
          12_1_47BFAA]
 gi|320456742|dbj|BAJ67364.1| ferredoxin [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461281|dbj|BAJ71901.1| ferredoxin [Bifidobacterium longum subsp. infantis 157F]
          Length = 106

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|213693103|ref|YP_002323689.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524564|gb|ACJ53311.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459280|dbj|BAJ69901.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 106

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|299536448|ref|ZP_07049760.1| ferredoxin 7Fe [Lysinibacillus fusiformis ZC1]
 gi|298727932|gb|EFI68495.1| ferredoxin 7Fe [Lysinibacillus fusiformis ZC1]
          Length = 78

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 37/64 (57%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+TE C   K   C++VCPV+C    +    I PD CIDCG CE  CPV+AI  + +
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVMTDTQYVIDPDLCIDCGACELVCPVEAIYFEDD 60

Query: 61 PGLE 64
             E
Sbjct: 61 LPSE 64


>gi|220904268|ref|YP_002479580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868567|gb|ACL48902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 366

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  ++CI C    CV  CP       ++   +    CI C  C   CP  AI  D    +
Sbjct: 190 INKDDCIGC--AKCVHSCPQQALSMRDHKSHVETARCIGCFECMTVCPAKAIVIDWATEM 247

Query: 64  ELWLKINSEYA 74
           E +++  +EYA
Sbjct: 248 EPFMERMTEYA 258


>gi|126697867|ref|YP_001086764.1| putative iron-sulfur-binding protein [Clostridium difficile 630]
 gi|254973963|ref|ZP_05270435.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-66c26]
 gi|255091349|ref|ZP_05320827.1| putative iron-sulfur-binding protein [Clostridium difficile CIP
           107932]
 gi|255099467|ref|ZP_05328444.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-63q42]
 gi|255305324|ref|ZP_05349496.1| putative iron-sulfur-binding protein [Clostridium difficile ATCC
           43255]
 gi|255313007|ref|ZP_05354590.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-76w55]
 gi|255515766|ref|ZP_05383442.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-97b34]
 gi|255648859|ref|ZP_05395761.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-37x79]
 gi|260682075|ref|YP_003213360.1| putative iron-sulfur-binding protein [Clostridium difficile CD196]
 gi|260685673|ref|YP_003216806.1| putative iron-sulfur-binding protein [Clostridium difficile R20291]
 gi|306518976|ref|ZP_07405323.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-32g58]
 gi|115249304|emb|CAJ67117.1| putative iron-sulfur-binding protein [Clostridium difficile]
 gi|260208238|emb|CBA60619.1| putative iron-sulfur-binding protein [Clostridium difficile CD196]
 gi|260211689|emb|CBE01977.1| putative iron-sulfur-binding protein [Clostridium difficile R20291]
          Length = 357

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VV E  C+ C    CV  CP       +    I  D C  CG C   CP  A+    E  
Sbjct: 191 VVKEKKCVGC--GKCVNSCPTKAISIVDKKAVIDSDVCYGCGECPTVCPTRAVTIQWESD 248

Query: 63  LELWLKINSEYA 74
            +++++  +EYA
Sbjct: 249 SDVFVEKMAEYA 260


>gi|119025314|ref|YP_909159.1| ferredoxin [Bifidobacterium adolescentis ATCC 15703]
 gi|212716645|ref|ZP_03324773.1| hypothetical protein BIFCAT_01575 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225351077|ref|ZP_03742100.1| hypothetical protein BIFPSEUDO_02660 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|118764898|dbj|BAF39077.1| ferredoxin [Bifidobacterium adolescentis ATCC 15703]
 gi|212660349|gb|EEB20924.1| hypothetical protein BIFCAT_01575 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225158533|gb|EEG71775.1| hypothetical protein BIFPSEUDO_02660 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 106

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVV + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVVAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|307266103|ref|ZP_07547648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918885|gb|EFN49114.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 372

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +V + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 IVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|29828838|ref|NP_823472.1| ferredoxin [Streptomyces avermitilis MA-4680]
 gi|29605943|dbj|BAC70007.1| putative ferredoxin [Streptomyces avermitilis MA-4680]
          Length = 108

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CV  CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRSCVGECPVDCIYEGRRALYIQPDECVDCGACEPVCPVEAIYFEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                     N+++  
Sbjct: 61 VPAEWGDHRGSNADFFD 77


>gi|23100035|ref|NP_693501.1| ferredoxin [Oceanobacillus iheyensis HTE831]
 gi|22778266|dbj|BAC14536.1| ferredoxin [Oceanobacillus iheyensis HTE831]
          Length = 79

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M +V+ + C   K  +CV VCPVDC  EG     I PD CIDCG C+  CPV AI  + D
Sbjct: 1  MAFVILDPCRGEKAGECVSVCPVDCIEEGVKQFYIDPDICIDCGACKAVCPVSAIEEEYD 60

Query: 59 TEPGLELWLKINSEYATQ 76
            P  E +L+   E+   
Sbjct: 61 LTPNQEKYLEEAEEFFAN 78


>gi|256371808|ref|YP_003109632.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008392|gb|ACU53959.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 512

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ VT  C  C +  CV  CP    Y+  + +   +   CI C  C   CP DAI  + E
Sbjct: 61  SFQVT-RCNQCTNPPCVAACPTGAMYQRPDGIVDFNKAICIGCKACMAACPYDAIFINPE 119

Query: 61  PGLEL 65
                
Sbjct: 120 DHSAE 124


>gi|222099632|ref|YP_002534200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
 gi|221572022|gb|ACM22834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
          Length = 366

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVV E C+ C    C + CPV      +    I  D+CI CG C   C   A+ P  + 
Sbjct: 197 PYVVEEKCVAC--GTCAKFCPVGAITVTKV-ARIDYDKCIGCGQCIAMCSYGAMSPKWDS 253

Query: 62  GLELWLKINSEYAT 75
             +   K  +EYA 
Sbjct: 254 STDSLSKKMAEYAK 267


>gi|78185918|ref|YP_373961.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium
           luteolum DSM 273]
 gi|78165820|gb|ABB22918.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   CV++CPV+  ++  + +       CI C  C   CP +++  D E
Sbjct: 56  RCNHCEEPPCVDICPVEALHKRPDGIVDFDSRRCIGCKACAQACPYNSVYIDPE 109


>gi|290960677|ref|YP_003491859.1| ferredoxin [Streptomyces scabiei 87.22]
 gi|260650203|emb|CBG73319.1| ferredoxin [Streptomyces scabiei 87.22]
          Length = 103

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 42/65 (64%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + C+  K   C++ CPVDC YEG   L I PDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYVIAQPCVDVKDRACIDECPVDCIYEGPRKLYIQPDECVDCGACEPVCPVEAIFFEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 VPAEW 65


>gi|309390025|gb|ADO77905.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 501

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 30/64 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            + VT NC  C    C  VCPVD     E    I  ++CI+CG C+  CP +AI     P
Sbjct: 115 AHFVTNNCRKCLAHPCSIVCPVDAITIEEKAAVIDQEKCINCGKCKKACPYEAIVNYERP 174

Query: 62  GLEL 65
             E 
Sbjct: 175 CAEA 178



 Score = 41.1 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
             +  E CI C                  C E C VD     E     I+ + C+ CG C
Sbjct: 146 AVIDQEKCINCGKCKKACPYEAIVNYERPCAEACGVDAIESDEYQRAKINQNNCVSCGQC 205

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 206 IIACPFGAI 214


>gi|257784216|ref|YP_003179433.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469]
 gi|257472723|gb|ACV50842.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469]
          Length = 531

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C E+CP +     +    I  ++CI CG+C   CP  AI     P
Sbjct: 123 YRVTNACQGCLAHPCREICPKEAISFVDKKAYIDQEKCIQCGMCFKVCPYQAIHHHVRP 181



 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            Y+  E CI C    C +VCP    +                        I  ++C+ CG
Sbjct: 153 AYIDQEKCIQC--GMCFKVCPYQAIHHHVRPCAAACGMDAIGSDEHGRADIDYEKCVSCG 210

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 211 QCLVNCPFGAI 221


>gi|94269003|ref|ZP_01291347.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93451383|gb|EAT02241.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 265

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV  CP    ++  + +  +    CI C  C   CP  A   +         
Sbjct: 126 CNHCDNPPCVRACPTKATFKKADGVVAMDYHRCIGCRFCMAACPYGARSFNWREPRHHIR 185

Query: 68  KINSEYATQWPNITTK 83
           +IN +Y  +   +  K
Sbjct: 186 EINPDYPARTIGVVEK 201


>gi|111027053|ref|YP_709031.1| polysulphide reductase [Rhodococcus jostii RHA1]
 gi|110825592|gb|ABH00873.1| probable polysulphide reductase [Rhodococcus jostii RHA1]
          Length = 509

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            C  C    CV++CP    ++ ++ +     + CI C  C   CP DA+  D 
Sbjct: 59  RCNHCTDAPCVKICPTQALFKRDDGIVDFDNERCIGCKSCMQACPYDALYIDD 111



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 9/63 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAIK 56
              E CI CK   C++ CP D  Y  +                      C   CP  +I 
Sbjct: 87  FDNERCIGCK--SCMQACPYDALYIDDTTHTAAKCNLCAHRIDNDMEPACVVVCPTHSIW 144

Query: 57  PDT 59
              
Sbjct: 145 VGD 147


>gi|167630654|ref|YP_001681153.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase
           [Heliobacterium modesticaldum Ice1]
 gi|167593394|gb|ABZ85142.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase
           [Heliobacterium modesticaldum Ice1]
          Length = 484

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+E CPV    +      I+ ++CI+CG C   CP  AI
Sbjct: 93  FTVTEACRGCIAHPCMEACPVGAISQINRRAIINQEKCIECGRCRQACPYGAI 145



 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECP 51
           E CI C                  C++ CPV    Y  +    I   +CI+CG C   CP
Sbjct: 128 EKCIECGRCRQACPYGAITDTQRPCIKACPVKAISYSEDKLATIDQKKCINCGQCAYRCP 187

Query: 52  VDAI 55
             AI
Sbjct: 188 FGAI 191


>gi|116620169|ref|YP_822325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Solibacter usitatus Ellin6076]
 gi|116223331|gb|ABJ82040.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
          Solibacter usitatus Ellin6076]
          Length = 86

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +             L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDEPAYADAELLYIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEY 73
           AI    D       +   N+ Y
Sbjct: 61 SAIFALDDLPEKWSDFTAKNAAY 83


>gi|332285866|ref|YP_004417777.1| ferredoxin [Pusillimonas sp. T7-7]
 gi|330429819|gb|AEC21153.1| ferredoxin [Pusillimonas sp. T7-7]
          Length = 86

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 27  YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQ--WPNITT 82
            EG NFL I+PDECIDC +C  ECP+ AI  D E       ++ +N + +    W  I+ 
Sbjct: 1   MEGPNFLVINPDECIDCSICVAECPLGAIVSDHEVADEQRHFIDLNRQLSQHPAWKRISR 60

Query: 83  KKESLPSAAKMDGVKQKY 100
            K  L        VK K 
Sbjct: 61  AKAPLSDHEHWATVKDKL 78


>gi|226349641|ref|YP_002776755.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226245556|dbj|BAH55903.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 104

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          M +V+ E C+      C+E CPVDC YEG   L IH +ECIDCG CEP CPV AI+    
Sbjct: 1  MAFVIGEPCVDVMDKSCIEECPVDCIYEGGRMLYIHQNECIDCGACEPVCPVSAIRPAQK 60

Query: 59 TEPGLELWLKINSE 72
           +   + + + + E
Sbjct: 61 VDEQWQPFQESSRE 74


>gi|284043842|ref|YP_003394182.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283948063|gb|ADB50807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 89

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 10/87 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+ ++CI  K   CVEVCPVDC +   N         L I+P+ECIDC  C  +CPV
Sbjct: 1  MAYVINQSCIGTKDASCVEVCPVDCIHPTPNEPGFDETDQLYINPEECIDCDACFEQCPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEYATQW 77
          +AI PD          ++ N+ +  Q 
Sbjct: 61 NAITPDDLVPEKWPDAVERNAAFFQQT 87


>gi|46579698|ref|YP_010506.1| reductase, iron-sulfur binding subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602822|ref|YP_967222.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46449113|gb|AAS95765.1| reductase, iron-sulfur binding subunit, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563051|gb|ABM28795.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Desulfovibrio vulgaris DP4]
 gi|311233493|gb|ADP86347.1| reductase, iron-sulfur binding subunit, putative [Desulfovibrio
           vulgaris RCH1]
          Length = 261

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV VCP    ++  + + +     CI C  C   CP  A   +         
Sbjct: 124 CNHCENPPCVRVCPTKATFKRADGIVVMDYHRCIGCRFCMAGCPYGARSFNFGDPQPHIK 183

Query: 68  KINSEYATQWPNITTK 83
            IN ++  +   +  K
Sbjct: 184 AINPKFPARTRGVVEK 199


>gi|317490387|ref|ZP_07948871.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|316910522|gb|EFV32147.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 176

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           Y V+ +C  C +  C  VCP    ++ E  L      +CI CG C   CP  A   D
Sbjct: 28 AYHVSISCNHCNNPVCTRVCPTGAMHKDELGLVWPDATKCIGCGYCTMACPYHAPHID 85


>gi|291165831|gb|EFE27878.1| Fe-hydrogenase large subunit family protein [Filifactor alocis ATCC
           35896]
          Length = 498

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 29/61 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT  C  C    C++VCPV     GE    I  ++CI CG C+  CP +AI     P  E
Sbjct: 116 VTSTCRQCMAHPCIQVCPVGAITMGETQTHIDKEKCIKCGKCKEACPYNAIIQYDRPCAE 175

Query: 65  L 65
            
Sbjct: 176 A 176



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           T++  E CI C    C E CP +   + +                     I  D+C+ CG
Sbjct: 144 THIDKEKCIKC--GKCKEACPYNAIIQYDRPCAEACGVNAIGSDEYGRALIDHDKCVSCG 201

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 202 QCMAHCPFGAI 212


>gi|284042634|ref|YP_003392974.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283946855|gb|ADB49599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 86

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTYV+ E CI  K   C EVCPVDC +  ++         L I P+ECIDC  C   CPV
Sbjct: 1  MTYVIAEPCIGEKDHSCTEVCPVDCIHPTQDEPGFAEATMLYIDPEECIDCDACVEACPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEYATQ 76
          DAI P+         + + N+ Y  Q
Sbjct: 61 DAIFPEDLLPAQWAEYAERNAAYFKQ 86


>gi|309775984|ref|ZP_07670976.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916266|gb|EFP62014.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 504

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T VVT+ C  C    C EVCP D          I  ++CI CG C   CP  AI     P
Sbjct: 113 TVVVTDTCQGCLAHPCKEVCPKDAISMVNGKSYIDQEKCIKCGRCMDVCPYGAINKLERP 172



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C++VCP     + E                     I  D+C+ CG
Sbjct: 144 SYIDQEKCIKC--GRCMDVCPYGAINKLERPCARSCGMDAITSDELGRAEIDYDKCVSCG 201

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 202 MCLVNCPFGAI 212


>gi|313898382|ref|ZP_07831919.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312956764|gb|EFR38395.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 504

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T VVT+ C  C    C EVCP D          I  ++CI CG C   CP  AI     P
Sbjct: 113 TVVVTDTCQGCLAHPCKEVCPKDAISMVNGKSYIDQEKCIKCGRCMDVCPYGAINKLERP 172



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C++VCP     + E                     I  D+C+ CG
Sbjct: 144 SYIDQEKCIKC--GRCMDVCPYGAINKLERPCARSCGMDAITSDELGRAEIDYDKCVSCG 201

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 202 MCLVNCPFGAI 212


>gi|148270023|ref|YP_001244483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga petrophila RKU-1]
 gi|147735567|gb|ABQ46907.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga
           petrophila RKU-1]
          Length = 357

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVV E C+ C    C + CPV      +    I  ++CI CG C   C   A+ P  + 
Sbjct: 188 PYVVEEKCVAC--GTCAKFCPVGAITVTKV-AKIDYEKCIGCGQCIAMCSYGAMSPKWDS 244

Query: 62  GLELWLKINSEYAT 75
             +   K  +EYA 
Sbjct: 245 STDSLSKKMAEYAK 258


>gi|261338294|ref|ZP_05966178.1| ferredoxin [Bifidobacterium gallicum DSM 20093]
 gi|270276957|gb|EFA22811.1| ferredoxin [Bifidobacterium gallicum DSM 20093]
          Length = 107

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MAYVIAQPCVDVKDKACVDECPVDCIYEGVRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPEEW 65


>gi|89893061|ref|YP_516548.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1
           precursor [Desulfitobacterium hafniense Y51]
 gi|89332509|dbj|BAE82104.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1
           precursor [Desulfitobacterium hafniense Y51]
          Length = 264

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M ++    C  C H  CV VCP    +  E+ +  +    CI C  C   CP  A   + 
Sbjct: 115 MPFL--TLCNHCDHPPCVRVCPTQATFRREDGVVGMDMHRCIGCRFCMAACPYGARSFNY 172

Query: 60  EPGLELWLKINSEYATQWPNITTK 83
                   KIN EY  +   +  K
Sbjct: 173 WDPKPHLAKINPEYPHRSKGVVEK 196


>gi|219666328|ref|YP_002456763.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219536588|gb|ACL18327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 264

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M ++    C  C H  CV VCP    +  E+ +  +    CI C  C   CP  A   + 
Sbjct: 115 MPFL--TLCNHCDHPPCVRVCPTQATFRREDGVVGMDMHRCIGCRFCMAACPYGARSFNY 172

Query: 60  EPGLELWLKINSEYATQWPNITTK 83
                   KIN EY  +   +  K
Sbjct: 173 WDPKPHLAKINPEYPHRSKGVVEK 196


>gi|327400634|ref|YP_004341473.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316142|gb|AEA46758.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 243

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V + C  C++  CV VCPV   Y  ++ +  +  ++CI CG C   CP  A     E 
Sbjct: 109 YFVPKLCNQCENAPCVAVCPVGATYMTDDGVVLVDYEKCIGCGYCVSACPYGARYLYPED 168

Query: 62  GLELWL 67
           G   ++
Sbjct: 169 GESEYM 174


>gi|312200512|ref|YP_004020573.1| ferredoxin [Frankia sp. EuI1c]
 gi|311231848|gb|ADP84703.1| ferredoxin [Frankia sp. EuI1c]
          Length = 117

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 36/60 (60%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+   C+      CVE CP+DC Y G   L IHP+ECIDCG C   CPVDAI  D +
Sbjct: 1  MAYVIGAACVDIMDQSCVEDCPIDCIYTGARKLYIHPEECIDCGACARSCPVDAISWDRD 60


>gi|306820054|ref|ZP_07453702.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551832|gb|EFM39775.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 503

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY VT NC  C    C++VCPV+    G+    I  ++CI CG C+  CP +AI
Sbjct: 114 TYRVTNNCRKCLAHPCIQVCPVNAISMGQYSTIIDEEKCIRCGRCKDNCPYNAI 167


>gi|269216153|ref|ZP_06160007.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269130412|gb|EEZ61490.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 190

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+  C  C    C+EVCP    ++    L  +    CI CG C   CP  A   D  
Sbjct: 40  AYHVSLACNHCDQPACMEVCPTGAMHKDGLGLVQVDHMRCIGCGYCTIACPYHAPSIDPA 99

Query: 61  PGL 63
              
Sbjct: 100 LHQ 102


>gi|15642809|ref|NP_227850.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170288707|ref|YP_001738945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga sp. RQ2]
 gi|281412096|ref|YP_003346175.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
 gi|4980519|gb|AAD35128.1|AE001691_2 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170176210|gb|ACB09262.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           sp. RQ2]
 gi|281373199|gb|ADA66761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
          Length = 357

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVV E C+ C    C + CPV      +    I  ++CI CG C   C   A+ P  + 
Sbjct: 188 PYVVEEKCVAC--GTCAKFCPVGAITVTKV-AKIDYEKCIGCGQCIAMCSYGAMSPKWDS 244

Query: 62  GLELWLKINSEYAT 75
             +   K  +EYA 
Sbjct: 245 STDSLSKKMAEYAK 258


>gi|303248776|ref|ZP_07335028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489863|gb|EFL49792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 376

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +VV  + CI C    CV VCP       +    I    CI CG C   CP  A++ D   
Sbjct: 195 FVVEPKKCIGC--GQCVAVCPAGAATMQDKKAFIEKAICIGCGECLTVCPKKAMRIDWHT 252

Query: 62  GLELWLKINSEYA 74
            +  +++   EYA
Sbjct: 253 EIVPFMERLVEYA 265


>gi|89056240|ref|YP_511691.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88865789|gb|ABD56666.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp. CCS1]
          Length = 116

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+   C+  K   C   CPVDC YEGE    IHP ECI+CG+CE  CPVDAI+ D E
Sbjct: 1   MALVILSACVDVKDGICTTSCPVDCIYEGERMFYIHPTECIECGMCESICPVDAIRYDDE 60

Query: 61  PGLEL--WLKINSEYATQWP-------NITTKKESLPSAAKMDGVKQKYE 101
              E   +  +N+                    + L     +  +  K E
Sbjct: 61  VPAEEQPFADLNTSVFQSADGGVQEPGGWAKGMDPLRDPTVLADMAAKTE 110


>gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum]
          Length = 597

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C  VCPV     + +    I  D+CI CG C   CPV+AI
Sbjct: 543 YFITDKCIGC--TKCARVCPVTAISGKVKEKHVIDTDKCIKCGACMDACPVNAI 594



 Score = 35.7 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE 28
           + T+ CI C    C++ CPV+   +
Sbjct: 574 IDTDKCIKC--GACMDACPVNAIIK 596


>gi|317486152|ref|ZP_07944996.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922601|gb|EFV43843.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 265

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV VCP    ++ E+ + +  P  CI C  C   CP  A   +         
Sbjct: 128 CNHCENPPCVRVCPTAATFKREDGIVVMDPHRCIGCRFCMAGCPFGARSFNFRDPQPYVK 187

Query: 68  KINSEYATQWPNITTK 83
            +N E+  +   +  K
Sbjct: 188 DVNPEFPMRTRGVVEK 203


>gi|288919073|ref|ZP_06413413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EUN1f]
 gi|288349513|gb|EFC83750.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EUN1f]
          Length = 113

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M +V+T  CI  K   C++  CP DC Y G   + I+PDEC +CG C   CPV A   D 
Sbjct: 1   MPFVITSACIDVKDGACLDGGCPADCIYTGGRKMYINPDECTECGACALRCPVGAAMLDE 60

Query: 60  EPGLELWLKINSE---YATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
               E    I SE   ++   P         P  A   G      ++ +
Sbjct: 61  MVPEEEQEFIRSEELFFSETLPGRDEPIGDDPGGAAKVGKIDADSEFVA 109


>gi|126650009|ref|ZP_01722242.1| ferredoxin [3Fe-4S](4Fe-4S) [Bacillus sp. B14905]
 gi|126593181|gb|EAZ87143.1| ferredoxin [3Fe-4S](4Fe-4S) [Bacillus sp. B14905]
          Length = 78

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+TE C   K   C++VCPV+C    +    I+PD CIDCG CE  CPV+AI  + E
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVNTDTQYVINPDICIDCGACELVCPVEAIFFEDE 60

Query: 61 PGLE 64
             E
Sbjct: 61 LPAE 64


>gi|313889048|ref|ZP_07822706.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844921|gb|EFR32324.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 501

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y  T+NC  C    C+ VCPV+    G++   I  D+C+ CG C   CP  AI     P
Sbjct: 112 AYYTTDNCRKCLAHPCINVCPVNAISMGKDRTIIDKDKCVRCGRCHDACPYSAIVKYERP 171



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
           T +  + C+ C                  C   C VD     E     I  D+C+ CG C
Sbjct: 143 TIIDKDKCVRCGRCHDACPYSAIVKYERPCAAACGVDAISSDEFGRAEIDHDKCVACGRC 202

Query: 47  EPECPVDAI 55
             ECP  AI
Sbjct: 203 IAECPFGAI 211


>gi|299139029|ref|ZP_07032206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidobacterium sp. MP5ACTX8]
 gi|298599183|gb|EFI55344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidobacterium sp. MP5ACTX8]
          Length = 86

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +  ++         L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDETGHGEAEQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D       + + N+ + 
Sbjct: 61 SAIYAGDDLPDKWVSFQEKNATHF 84


>gi|197122197|ref|YP_002134148.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172046|gb|ACG73019.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 731

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           YV T+  C+ C+   C   CPV   ++ E+        +CI C  C   CP      + +
Sbjct: 72  YVSTKRQCMHCEEPACAAACPVTALHKTESGAVAYDASKCIGCRYCMWACPFGVPTAEWD 131

Query: 61  PGLEL 65
                
Sbjct: 132 SLAPK 136



 Score = 37.7 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 11/99 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C++  C+  CP        + LA    +C    +C       A+ P    G+ L  
Sbjct: 110 KCIGCRY--CMWACPFGVPTAEWDSLAPKIQKC---DMCVGR--QAAVAPVERNGVALSA 162

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
           +  +  A  +      K+    A K        ++    
Sbjct: 163 EERTRLAAAYATPACVKQCPAGALKY----GDRDELLKE 197


>gi|172040506|ref|YP_001800220.1| dimethyl sulfoxide reductase chain B [Corynebacterium urealyticum
           DSM 7109]
 gi|171851810|emb|CAQ04786.1| dimethyl sulfoxide reductase chain B [Corynebacterium urealyticum
           DSM 7109]
          Length = 213

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           TY  + +C  C+   C +VCP    ++GE+ +  + PD+CI C  CE  CP  A + + E
Sbjct: 68  TYYTSISCNHCEDPICAKVCPTTAMHKGEDGIVTVDPDKCIGCRYCEWACPYSAPQFNPE 127

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                   + ++   +             A     + +  EKY
Sbjct: 128 TKQMSKCDLCADLRAEGEEPACVTACPSRALDWGPIDELREKY 170


>gi|293401032|ref|ZP_06645177.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306058|gb|EFE47302.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 504

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 25/58 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VVT+ C  C    C EVCP D          I  D+CI CG C   CP  AI     P
Sbjct: 115 VVTDTCQGCLAHPCKEVCPKDAISIINGKSVIDQDKCIKCGRCMDVCPYGAINKLERP 172



 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    C++VCP     + E                     I  ++C+ CG+C
Sbjct: 146 IDQDKCIKC--GRCMDVCPYGAINKLERPCARSCGMDAIKSDEFGRAEIDHEKCVSCGMC 203

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 204 LVNCPFGAI 212


>gi|148553514|ref|YP_001261096.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1]
 gi|148498704|gb|ABQ66958.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1]
          Length = 801

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP    + G++      D CI CG C+  CP   I+ + EP  +
Sbjct: 662 VPTSCRHCEHPHCMADCPPTAIHRGQDGEVYIDDTCIGCGNCQRNCPYGVIRMEKEPPQK 721

Query: 65  L 65
            
Sbjct: 722 P 722


>gi|169827413|ref|YP_001697571.1| ferredoxin [Lysinibacillus sphaericus C3-41]
 gi|168991901|gb|ACA39441.1| Ferredoxin 7Fe (Seven-iron ferredoxin) [Lysinibacillus sphaericus
          C3-41]
          Length = 78

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+TE C   K   C++VCPV+C    +    I+PD CIDCG CE  CPV+AI  + E
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVNTDTQYVINPDICIDCGACELVCPVEAIFFEDE 60

Query: 61 PGLE 64
             E
Sbjct: 61 LPAE 64


>gi|220916973|ref|YP_002492277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954827|gb|ACL65211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 731

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           YV T+  C+ C+   C   CPV   ++ E+        +CI C  C   CP      + +
Sbjct: 72  YVSTKRQCMHCEEPACAAACPVTALHKTESGAVAYDASKCIGCRYCMWACPFGVPTAEWD 131

Query: 61  PGLEL 65
                
Sbjct: 132 SLAPK 136



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 11/99 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C++  C+  CP        + LA    +C    +C       A+  +         
Sbjct: 110 KCIGCRY--CMWACPFGVPTAEWDSLAPKIQKC---DMCVGR-QTAAVPVERNGVALT-A 162

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
           +  +  A  +      K+    A K        ++    
Sbjct: 163 EERTHLAAAYAIPACVKQCPAGALKY----GDRDELLKE 197


>gi|56964420|ref|YP_176151.1| ferredoxin [Bacillus clausii KSM-K16]
 gi|56910663|dbj|BAD65190.1| ferredoxin [Bacillus clausii KSM-K16]
          Length = 79

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+   CI  K  +CV+VCPVDC  EGE+   I+PD CIDCG C+  CPVDAI  + E
Sbjct: 1  MAFVILSPCIGEKAGECVDVCPVDCIEEGEDQYFINPDICIDCGACQGVCPVDAIVEEYE 60

Query: 61 --PGLELWLKINSEYA 74
            P  + +LK   E+ 
Sbjct: 61 MAPEDQKFLKKAEEFF 76


>gi|189345592|ref|YP_001942121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189339739|gb|ACD89142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 517

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C    CV++CPV+   +  + +       CI C  C   CP +A+  D +  
Sbjct: 56  RCNHCAEPPCVDICPVEALQKRPDGIVDFDSRRCIGCKACAQACPYNALYIDPDTH 111



 Score = 37.3 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 13/57 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---------CEPECPVDAI 55
            CI CK   C + CP +  Y   +       +C  C           C   CP  AI
Sbjct: 88  RCIGCK--ACAQACPYNALYIDPDTHT--SAKCNYCAHRKEVGLQPACVAICPQQAI 140


>gi|188585464|ref|YP_001917009.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350151|gb|ACB84421.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 482

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+TE C  C    CV  CPV      ++   I   +CI+CG C+  CP +AI
Sbjct: 89  YVITEACRGCLANHCVSYCPVGAIEFVQHKAKIDGQKCIECGKCKDACPYNAI 141


>gi|86158509|ref|YP_465294.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775020|gb|ABC81857.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 731

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           YV T+  C+ C+   C   CPV   ++ E+        +CI C  C   CP      + +
Sbjct: 72  YVSTKRQCMHCEEPACAAACPVTALHKTESGAVAYDASKCIGCRYCMWACPFGVPTAEWD 131

Query: 61  PGLEL 65
                
Sbjct: 132 SLAPK 136



 Score = 38.0 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 11/99 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C++  C+  CP        + LA    +C    +C       A  PD   G+ L  
Sbjct: 110 KCIGCRY--CMWACPFGVPTAEWDSLAPKIQKC---DMCVGR--QTAAVPDERNGVALTA 162

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
           +  +  A  +      K+    A K        ++    
Sbjct: 163 EERAHLAAAYAIPACVKQCPAGALKY----GDRDELLKE 197


>gi|320012828|gb|ADW07678.1| ferredoxin [Streptomyces flavogriseus ATCC 33331]
          Length = 107

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+A+  + +
Sbjct: 1  MTYVIAQPCVDIKDKACIEECPVDCIYEGPRKLYIHPDECVDCGACEPVCPVEAVFYEDD 60

Query: 61 PGLE 64
             E
Sbjct: 61 LPAE 64


>gi|313679989|ref|YP_004057728.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Oceanithermus
           profundus DSM 14977]
 gi|313152704|gb|ADR36555.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Oceanithermus
           profundus DSM 14977]
          Length = 257

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++C+ C    CVE CP       E  +  +  D CI C  C   CP DAI  D E
Sbjct: 75  DSCMHCSSAACVEACPTGAVGYREGGVVTVDQDWCIGCRNCVQACPYDAIHYDEE 129



 Score = 40.7 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 9/60 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAIK 56
           V  + CI C++  CV+ CP D  +  E    +                 C   CP  A+ 
Sbjct: 104 VDQDWCIGCRN--CVQACPYDAIHYDEEKGVVDKCTLCYDRVSNGLEPACVKACPTGALH 161


>gi|307297192|ref|ZP_07577004.1| cyclic nucleotide-binding protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877363|gb|EFN08595.1| cyclic nucleotide-binding protein [Sphingobium chlorophenolicum
           L-1]
          Length = 841

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP +  + G +      + CI CG C+  CP   I+ D+ P  +
Sbjct: 702 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFIDETCIGCGNCQRNCPYGVIRMDSVPPKK 761

Query: 65  L 65
            
Sbjct: 762 P 762


>gi|218961482|ref|YP_001741257.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
          bidirectional hydrogenase), subunit alpha (hymC-like)
          [Candidatus Cloacamonas acidaminovorans]
 gi|167730139|emb|CAO81051.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
          bidirectional hydrogenase), subunit alpha (hymC-like)
          [Candidatus Cloacamonas acidaminovorans]
          Length = 435

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          ++ +NC  C  T CV VCP +     ++   I P  C+DCG C   C   AI P ++P
Sbjct: 12 ILADNCTGC--TACVRVCPTEAIRVRDHKANIDPYRCVDCGNCVNVCRFHAIIPLSDP 67


>gi|87198326|ref|YP_495583.1| cyclic nucleotide-binding domain-containing protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134007|gb|ABD24749.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 858

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP +  + G +      D CI CG C+  CP   I+ D  P  +
Sbjct: 712 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFINDTCIGCGNCQRNCPYGVIRMDKVPPKK 771

Query: 65  L 65
            
Sbjct: 772 P 772


>gi|294146722|ref|YP_003559388.1| iron-sulfur protein [Sphingobium japonicum UT26S]
 gi|292677139|dbj|BAI98656.1| iron-sulfur protein [Sphingobium japonicum UT26S]
          Length = 837

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP +  + G +      + CI CG C+  CP   I+ D+ P  +
Sbjct: 698 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFIDETCIGCGNCQRNCPYGVIRMDSVPPKK 757

Query: 65  L 65
            
Sbjct: 758 P 758


>gi|167770334|ref|ZP_02442387.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM
           17241]
 gi|167667656|gb|EDS11786.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM
           17241]
          Length = 513

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C  C    C EVCP D          I  ++CI CG C   CP  AI
Sbjct: 124 YRVTDCCQGCLAHPCKEVCPRDAVSIVHGKSVIDQEKCIKCGRCAEVCPYGAI 176



 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCGVC 46
           +  E CI C    C EVCP     +                       I  D+C+ CG+C
Sbjct: 156 IDQEKCIKC--GRCAEVCPYGAILKLERPCASACGMDAISSDEHGRAVIDYDKCVSCGMC 213

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 214 IVNCPFGAI 222


>gi|317133605|ref|YP_004092919.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471584|gb|ADU28188.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 482

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VT+ C  C    C   CP       ++   I P++C +CG C   CP  AI
Sbjct: 90  FSVTDACRGCIAHKCHAACPFGAISYEKHRAVIDPEKCRECGRCMKACPYHAI 142



 Score = 38.4 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
             +  E C  C    C++ CP     E                  +    I+ D C  CG
Sbjct: 120 AVIDPEKCREC--GRCMKACPYHAIIERQRPCVAGCAAKAIEIDDQKKAKINYDRCTSCG 177

Query: 45  VCEPECPVDAI 55
            C  +CP  A+
Sbjct: 178 NCVYQCPFGAM 188


>gi|313679357|ref|YP_004057096.1| ferredoxin [Oceanithermus profundus DSM 14977]
 gi|313152072|gb|ADR35923.1| ferredoxin [Oceanithermus profundus DSM 14977]
          Length = 82

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 5/79 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAIKP 57
          M +++ E C+  K   CVEVCPV+C YE     + L IHP+ECIDCG C P CPV AI P
Sbjct: 1  MAHIICEPCVGVKDKACVEVCPVECIYEAPAEYDMLYIHPEECIDCGACVPACPVSAIFP 60

Query: 58 --DTEPGLELWLKINSEYA 74
            D     + ++ +N + A
Sbjct: 61 EEDVPEQWKSYIDLNYKLA 79


>gi|253996419|ref|YP_003048483.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8]
 gi|253983098|gb|ACT47956.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8]
          Length = 824

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP---DTEP 61
           V  +C  C+H  C++ CP D  +   +      D CI CG C+  CP D I+      +P
Sbjct: 688 VPTSCRHCEHPHCMKDCPPDAIHRAPHGEVYIDDSCIGCGNCQQNCPYDVIQMAVIQDQP 747

Query: 62  GLELWLKI 69
              LW  +
Sbjct: 748 EQSLWQML 755


>gi|330835620|ref|YP_004410348.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567759|gb|AEB95864.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 405

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C +  C+  CP +   + +N +  I+ ++CI CG C+  CP +A+    +  +  
Sbjct: 58  SCNHCDNPVCLSSCPANAITKDKNGIVKINSEKCIGCGYCQWACPYEALHFSKDGTMSK 116



 Score = 37.3 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 13/64 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI--------DCGVCEPECPVDAI 55
           + +E CI C +  C   CP +  +  ++       +C             C   CP  A+
Sbjct: 86  INSEKCIGCGY--CQWACPYEALHFSKDGT---MSKCHLCFDRLGKGLPYCVEACPTGAL 140

Query: 56  KPDT 59
               
Sbjct: 141 TFGW 144


>gi|322371908|ref|ZP_08046450.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus
           paucihalophilus DX253]
 gi|320548330|gb|EFW90002.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus
           paucihalophilus DX253]
          Length = 594

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C  + C +VCPV   +E E+ +    P+ CI C  C   CP DA+  D E
Sbjct: 60  RCNHCDDSPCTDVCPVTALWEREDGIVDFDPERCIGCKACMQGCPYDALYIDPE 113



 Score = 38.4 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 9/72 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAIK 56
              E CI CK   C++ CP D  Y                         C   CP DAI 
Sbjct: 88  FDPERCIGCK--ACMQGCPYDALYIDPETSTAAKCNYCSHRVDTGREPACVTVCPEDAII 145

Query: 57  PDTEPGLELWLK 68
                  +  + 
Sbjct: 146 AGDVENPDTEIA 157


>gi|302336154|ref|YP_003801361.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
 gi|301319994|gb|ADK68481.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
          Length = 539

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C E+CP       +    I  D C+ CG+CE  CP  AI     P
Sbjct: 127 YTVTDQCQGCLAHPCREICPKQAISFVDKRAHIDQDLCVQCGMCERTCPYHAIHHHVRP 185



 Score = 40.7 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 19/82 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++  + C+ C    C   CP    +                        I  ++C+ CG
Sbjct: 157 AHIDQDLCVQC--GMCERTCPYHAIHHHVRPCAAACGMHAIGSDEHGRADIDYEKCVSCG 214

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
            C   CP  AI   ++ G  +W
Sbjct: 215 QCLVNCPFGAIADKSQIGQVIW 236


>gi|258515754|ref|YP_003191976.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779459|gb|ACV63353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 369

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + CI C    C  VCP         N   I PD CI CG C   CP  AI+ D E  
Sbjct: 190 VNQDKCIGC--AQCSTVCPEKASTLNDNNKAEISPDSCIGCGECLTTCPEKAIEMDWETE 247

Query: 63  LELWLKINSEYA 74
           +   L+  +EYA
Sbjct: 248 IPALLERMTEYA 259


>gi|320106410|ref|YP_004182000.1| iron-sulfur cluster-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319924931|gb|ADV82006.1| iron-sulfur cluster-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 86

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T C + CPVDC +        E    L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACADACPVDCIHPKKGEDGNEEAVQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D       + + N+ + 
Sbjct: 61 SAIYAADDLPDKWAEFQEKNAAHF 84


>gi|325833389|ref|ZP_08165838.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|325485313|gb|EGC87782.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 207

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y V+ +C  C +  C  VCP    ++ E  L      +CI CG C   CP  A   D
Sbjct: 59  AYHVSISCNHCNNPVCTRVCPTGAMHKDELGLVWPDATKCIGCGYCTMACPYHAPHID 116


>gi|320352432|ref|YP_004193771.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Desulfobulbus propionicus DSM 2032]
 gi|320120934|gb|ADW16480.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Desulfobulbus propionicus DSM 2032]
          Length = 275

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV  CP    +  E+ +  +    CI C  C   CP  +   +         
Sbjct: 136 CNHCDNPPCVRACPTKATFRSEDGIIGMDYHRCIGCRFCMAACPYGSRSFNWRDPRSFIT 195

Query: 68  KINSEYATQWPNITTK 83
            IN +Y  +   +  K
Sbjct: 196 DINRDYPARTRGVVEK 211


>gi|297582883|ref|YP_003698663.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141340|gb|ADH98097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 286

 Score = 61.5 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C+ C    C  VCPV   Y+ +N + +   D CI C  C   CP  A   D     
Sbjct: 131 IARPCMHCDKPPCASVCPVRATYKADNGIVVQDNDRCIGCRYCMVACPYGARSFDFGEEY 190

Query: 64  ELWLKIN 70
           E  L  N
Sbjct: 191 EEILDAN 197


>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score = 61.5 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ +NCI C  T CV+VCPVD    E +    I PD+CI CG C  +C  +AI
Sbjct: 544 IIADNCIGC--TACVKVCPVDAISGEKKQAHEIDPDKCIGCGECYEKCKFEAI 594


>gi|302562520|ref|ZP_07314862.1| ferredoxin-NADP reductase [Streptomyces griseoflavus Tu4000]
 gi|302480138|gb|EFL43231.1| ferredoxin-NADP reductase [Streptomyces griseoflavus Tu4000]
          Length = 519

 Score = 61.5 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 12/86 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CP 
Sbjct: 1  MAFAITQTC--CNDATCVSVCPVNCIHPTPEERAFGSTEMLHIDPRSCIDCGACADACPA 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQ 76
          DAI P      G  ++ +IN+ Y   
Sbjct: 59 DAILPVDRLSEGQRVYERINAAYFEY 84


>gi|317486663|ref|ZP_07945480.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922046|gb|EFV43315.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 377

 Score = 61.5 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   CI C    CV +CP         E      I  + CI C  C   C   AI  DT
Sbjct: 195 VIYPKCIGC--GQCVPLCPRSALSLEKAEKGRHAVIDKERCIGCYECVTACKQGAIGVDT 252

Query: 60  EPGLELWLKINSEYA 74
                 + +  +EYA
Sbjct: 253 PNEYSDFAERMAEYA 267


>gi|257792519|ref|YP_003183125.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476416|gb|ACV56736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 207

 Score = 61.5 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y V+ +C  C +  C  VCP    ++ E  L      +CI CG C   CP  A   D
Sbjct: 59  AYHVSISCNHCNNPVCTRVCPTGAMHKDELGLVWPDATKCIGCGYCTMACPYHAPHID 116


>gi|124485356|ref|YP_001029972.1| hypothetical protein Mlab_0531 [Methanocorpusculum labreanum Z]
 gi|124362897|gb|ABN06705.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 367

 Score = 61.5 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ + CI+C    C+  CP  C       ++I  D CI C +C   CP  AI  D +   
Sbjct: 189 ILEDKCIVC--GACMNACPEFCISIAGKAVSIDLDHCIGCLMCMNTCPEHAIDLDWKDDG 246

Query: 64  ELWLKINSEYAT 75
            ++++   EYA 
Sbjct: 247 VVFVERMIEYAA 258


>gi|297538314|ref|YP_003674083.1| cyclic nucleotide-binding protein [Methylotenera sp. 301]
 gi|297257661|gb|ADI29506.1| cyclic nucleotide-binding protein [Methylotenera sp. 301]
          Length = 833

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  +C  C+H  C++ CP D  +   +      D CI CG C+  CP D I+ 
Sbjct: 693 VPTSCRHCEHPHCMKDCPPDAIHRAPHGEVYIDDSCIGCGNCQQNCPYDVIQM 745


>gi|332526062|ref|ZP_08402200.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rubrivivax benzoatilyticus JA2]
 gi|332109905|gb|EGJ10533.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rubrivivax benzoatilyticus JA2]
          Length = 321

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C +  CV+ CP    ++  +  + +  D CI C  C   CP  A   +         
Sbjct: 171 CMQCDNPPCVKACPTKATWKEPDGIVVVDYDWCIGCRYCMTACPYWARHFNWTEPQIPAA 230

Query: 68  KINSEYA 74
           + N   +
Sbjct: 231 EFNPNLS 237


>gi|325972119|ref|YP_004248310.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy]
 gi|324027357|gb|ADY14116.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy]
          Length = 445

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          Y+V   C  C H  C++ CP       +    I  D CI+CG C   CP +AI  + +  
Sbjct: 11 YIVESACKGCTH--CMKRCPTQAIRIAKGKARIDNDLCIECGQCMAVCPNNAIAIEQDSL 68

Query: 63 LE 64
           +
Sbjct: 69 SQ 70


>gi|297170989|gb|ADI22004.1| ferredoxin [uncultured myxobacterium HF0200_01L06]
          Length = 117

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 13/113 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPECPV 52
           MT+V+T  C       CVEVCPVDC          +  N L I P+ECI+CGVCEPECP 
Sbjct: 1   MTWVITSLCRDKVDMSCVEVCPVDCIVQYTGDDTDKFPNQLYIDPEECINCGVCEPECPW 60

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPNITTKKES---LPSAAKMDGVKQKY 100
           +AI  D       E    +N++           ++     PSA ++   K+K+
Sbjct: 61  EAIFEDEQVPDVFEADTALNADIVEVRDQFEVPEKPDMDPPSADEVKANKEKW 113


>gi|295697039|ref|YP_003590277.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912]
 gi|295412641|gb|ADG07133.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912]
          Length = 519

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + +T  C  C+   CV +CPV   ++  + +     + CI C  C   CP DAI    +
Sbjct: 65  FQIT-RCNQCEDPPCVAICPVSAMFQRPDGIVDFDREVCIGCKACMAACPYDAIYIHPD 122



 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 17/78 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC------IDCGV---CEPECPVDAIK- 56
           E CI CK   C+  CP D  Y   +  +   ++C      ID G+   C   CPV+AI  
Sbjct: 100 EVCIGCK--ACMAACPYDAIYIHPDIHS--AEKCNFCAHRIDQGLEPACVAVCPVEAIVV 155

Query: 57  ---PDTEPGLELWLKINS 71
               D E  +   +  N 
Sbjct: 156 GDLNDPESEVSQLIARNK 173


>gi|162452981|ref|YP_001615348.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sorangium cellulosum 'So ce 56']
 gi|161163563|emb|CAN94868.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 300

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C +  CV+VCPV   ++  + +  +  + CI C  CE  CP  A + +   
Sbjct: 149 YYLPVQCQQCDNAPCVKVCPVQATWKEPDGIVAVDYNWCIGCRYCEAACPYHARRFNWTK 208

Query: 62  GLELWLKIN 70
                 +IN
Sbjct: 209 PEVPADEIN 217


>gi|255502232|gb|ACU11597.1| HfsD [Thermoanaerobacterium saccharolyticum]
          Length = 495

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP            I  D+CI+CG C+  CP +AI  +  P
Sbjct: 91  YRVTEACRGCITHRCTEVCPKGAITIINKKANIDYDKCIECGRCKDACPYNAISDNLRP 149


>gi|119355969|ref|YP_910613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119353318|gb|ABL64189.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 517

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C    CV +CPV+   + E+ +       CI C  C   CP +A+  D E  
Sbjct: 56  RCNHCAEPPCVAICPVEALQKREDGIVDFDGRRCIGCKACAQACPYNALYIDPETH 111



 Score = 36.1 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 13/57 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---------CEPECPVDAI 55
            CI CK   C + CP +  Y           +C  C           C   CP  AI
Sbjct: 88  RCIGCK--ACAQACPYNALYIDPETHT--SAKCNYCAHRKEVGLQPACVAICPQQAI 140


>gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
 gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
          Length = 531

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +T+ C+ C  T C + CPVDC     +    I P +CI CG CE  CPV+AI
Sbjct: 477 FFITDKCVGC--TKCAKACPVDCITGVQKELHVIDPSKCIKCGSCEAACPVNAI 528


>gi|270307556|ref|YP_003329614.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dehalococcoides sp. VS]
 gi|270153448|gb|ACZ61286.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dehalococcoides sp. VS]
          Length = 312

 Score = 61.5 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C +  C +VCPV   ++  +  + I    CI C  C   CP  A   D     
Sbjct: 146 PCMHCDNPPCTKVCPVGATFKQPDGIVVIDYQRCIGCRFCIVACPYTARTMDYGDNY 202


>gi|292494297|ref|YP_003533440.1| molybdopterin oxidoreductase [Haloferax volcanii DS2]
 gi|291369264|gb|ADE01494.1| molybdopterin oxidoreductase [Haloferax volcanii DS2]
          Length = 273

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M+Y     C  C +  CV+VCPV+  Y  E+ +  I  D+CI C  C   CP +A   + 
Sbjct: 64  MSYQ-PTACQHCDNAPCVKVCPVNATYTREDGIVEIDYDKCIGCRYCMAACPYNARVFNW 122

Query: 60  EPGL 63
           +   
Sbjct: 123 DEPQ 126


>gi|169333814|ref|ZP_02861007.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259379|gb|EDS73345.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM
           17244]
          Length = 505

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 28/54 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  VT NC  C    C EVCPVD  Y       I+ D+C+ CG C   CP +AI
Sbjct: 110 TVFVTNNCRGCYAHPCSEVCPVDAVYFENGKSVINKDKCVRCGRCVEACPYNAI 163



 Score = 38.0 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 19/74 (25%)

Query: 4   VVTENCILCKHTDCVEVCP----------------VDCFYEGENF-LAIHPDECIDCGVC 46
           +  + C+ C    CVE CP                V+ + E E     I  ++C+ CG C
Sbjct: 143 INKDKCVRC--GRCVEACPYNAIVKFDRPCKASCGVNAYTEDEEGNAKIDYEKCVSCGQC 200

Query: 47  EPECPVDAIKPDTE 60
              CP   +   +E
Sbjct: 201 IVACPFGVVSDKSE 214


>gi|83589316|ref|YP_429325.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83572230|gb|ABC18782.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 231

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           VVT  C+ C    C  VCP     +  + + I    +CI C  C+  CP DA
Sbjct: 53  VVTTQCMHCDDPPCARVCPTGATQKRPDGIVIVDESKCIGCRYCQSACPYDA 104


>gi|254490549|ref|ZP_05103735.1| hypothetical protein MDMS009_881 [Methylophaga thiooxidans
          DMS010]
 gi|224464293|gb|EEF80556.1| hypothetical protein MDMS009_881 [Methylophaga thiooxydans
          DMS010]
          Length = 63

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 45 VCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +CEPECP +AI  +         +L+IN E +  WP I+ KK+ LP A + DG   K
Sbjct: 1  MCEPECPAEAIFSEDDLPDEQMEFLQINEELSQVWPVISEKKDPLPDAEEWDGKSDK 57


>gi|304317218|ref|YP_003852363.1| ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778720|gb|ADL69279.1| Ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 504

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP       +    I  D+CI+CG C+  CP +AI  +  P
Sbjct: 100 YRVTEACRGCITHRCTEVCPKGAISIIDRKSHIDYDKCIECGRCKEACPYNAISDNLRP 158


>gi|7416779|dbj|BAA94028.1| hypothetical electron transfer protein with 4 FeS centers
           [Rubrivivax gelatinosus]
          Length = 321

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C +  CV+ CP    ++  +  + +  D CI C  C   CP  A   +         
Sbjct: 171 CMQCDNPPCVKACPTKATWKEPDGIVVVDYDWCIGCRYCMTACPYWARHFNWTEPQIPAA 230

Query: 68  KIN 70
           + N
Sbjct: 231 EFN 233


>gi|15789981|ref|NP_279805.1| HmoA [Halobacterium sp. NRC-1]
 gi|169235702|ref|YP_001688902.1| dimethylsulfoxide reductase subunit B (electron transfer protein)
           [Halobacterium salinarum R1]
 gi|10580399|gb|AAG19285.1| molybdopterin oxidoreductase [Halobacterium sp. NRC-1]
 gi|167726768|emb|CAP13554.1| dimethylsulfoxide reductase subunit B (electron transfer protein)
           [Halobacterium salinarum R1]
          Length = 262

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           MTY     C  C++  CV+VCPV+  Y  ++ +  I  D+C+ C  C   CP +A   + 
Sbjct: 64  MTYQ-PTACQHCENAPCVKVCPVNATYTRDDGIVEIDYDKCMGCRYCMAACPYNARVFNW 122

Query: 60  EPGLE 64
           +    
Sbjct: 123 DEPEH 127


>gi|322436219|ref|YP_004218431.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9]
 gi|321163946|gb|ADW69651.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9]
          Length = 86

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K + CV+ CPVDC +             L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDSACVDACPVDCIHPKKDENGYSDATQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D       +   N+ + 
Sbjct: 61 SAIYAGDDLPEKWAEYQDKNAAHF 84


>gi|323701729|ref|ZP_08113400.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574]
 gi|323533265|gb|EGB23133.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574]
          Length = 467

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+ C  C    C   CP       +N   I    CI+CG C   CP  AI   T P
Sbjct: 93  YVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDHTVCIECGKCAKACPYHAIIEITRP 151



 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++    CI C    C + CP     E                       I  D C+ CG
Sbjct: 123 AFIDHTVCIEC--GKCAKACPYHAIIEITRPCERACALKAVKIDDSRKAVIDSDRCVSCG 180

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 181 MCVTVCPFGAI 191


>gi|15899475|ref|NP_344080.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
 gi|13816091|gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
          Length = 409

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E  +  
Sbjct: 62  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGVMSK 120



 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 17/74 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG----------VCEPECPVDAIK 56
           + CI C    C   CP +        +     +C  C            C   CP  A+ 
Sbjct: 93  DKCIGC--GFCTWACPYEALKFNNEGV---MSKCHFCYDRLAEGKGIPYCVEACPTGALA 147

Query: 57  PDTEPGLELWLKIN 70
                  E   ++N
Sbjct: 148 FGWIEKGEA--EVN 159


>gi|323706136|ref|ZP_08117705.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534580|gb|EGB24362.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 504

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP            I  D+CI+CG C+  CP +AI  +  P
Sbjct: 100 YRVTEACRGCITHRCTEVCPKGAITIINKKANIDYDKCIECGRCKDACPYNAISDNLRP 158


>gi|302878833|ref|YP_003847397.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans
           ES-2]
 gi|302581622|gb|ADL55633.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans
           ES-2]
          Length = 796

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C++ CP D  +   N      D CI CG C+  CP   I+   +   +
Sbjct: 672 VPTSCRHCEHPHCMKDCPPDAIHRSINGEVFISDNCIGCGNCQTNCPYGVIQMAVKQDYQ 731

Query: 65  L 65
            
Sbjct: 732 K 732


>gi|254478137|ref|ZP_05091520.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
          12653]
 gi|214035999|gb|EEB76690.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
          12653]
          Length = 203

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          VV + C  C    C+  CPV           I    CI CG C   C    IKP     +
Sbjct: 21 VVGKGCTAC--QMCIRNCPVGAISLVNGSAYIDHSICIGCGECVSMCQYGVIKPQWGTDM 78

Query: 64 ELWLKINSEYA 74
          + +++  +EYA
Sbjct: 79 DAFIERMTEYA 89


>gi|28212003|ref|NP_782947.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
 gi|28204446|gb|AAO36884.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
          Length = 494

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YVVTE C  C    C+EVCP            I+ + C +CG+CE  CP +AI
Sbjct: 104 YVVTEACRGCLQHKCMEVCPAGSINRAAGKAYINHETCKECGLCESACPYNAI 156


>gi|317497525|ref|ZP_07955844.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895208|gb|EFV17371.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 495

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++V E C  C    C+EVCP       + +  I  ++CI CG C+  CP  AI 
Sbjct: 112 AFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCPYGAIY 166



 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C +VCP    YE +                     I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKC--GQCKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCG 200

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 201 MCMVNCPFGAI 211


>gi|288931637|ref|YP_003435697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893885|gb|ADC65422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 235

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V + C+ C+   CV+VCPV+  +  ++    I  D CI C  C   CP  A     E
Sbjct: 103 AYFVPKLCMHCEKPPCVKVCPVNATWLTDDGFVLIDEDHCIGCKYCIQACPYGARYFHEE 162

Query: 61  PG 62
             
Sbjct: 163 KH 164



 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDA 54
           +  ++CI CK+  C++ CP    Y  E    +                 C   CP  A
Sbjct: 137 IDEDHCIGCKY--CIQACPYGARYFHEEKHVVDKCTWCYHRVKRGMKPACVHVCPTKA 192


>gi|57233532|ref|YP_180854.1| molybdopterin oxidoreductase, iron-sulfur binding subunit, putative
           [Dehalococcoides ethenogenes 195]
 gi|57223980|gb|AAW39037.1| molybdopterin oxidoreductase, iron-sulfur binding subunit, putative
           [Dehalococcoides ethenogenes 195]
          Length = 312

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C +  C +VCPV   ++  +  + I    CI C  C   CP  A   D     
Sbjct: 146 PCMHCDNPPCTKVCPVGATFKQPDGIVVIDYHRCIGCRFCIVACPYVARTMDYGDNY 202


>gi|269784345|emb|CBH51374.1| ferredoxin [Amycolatopsis balhimycina]
          Length = 137

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+   C+  K   CV  CP DC YEG   L IHPDEC++CG CE  CPV A+  +  
Sbjct: 1  MAYVIGLPCVDVKDRACVAECPTDCIYEGARSLYIHPDECMECGACEVVCPVGAVHYEEA 60

Query: 60 -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAKM 93
              L      N  +     P       S   AA +
Sbjct: 61 LPAALREHAPDNGRFFTEVLPGRDAPLGSPGGAAAV 96


>gi|296133064|ref|YP_003640311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031642|gb|ADG82410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 368

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C  T C   CP D     E    I  ++CI CG C   CP  AI  + +   
Sbjct: 190 VDADKCIGC--TKCTHWCPADAITVNEKVARISEEKCIGCGECTVTCPAHAIAINWKTDP 247

Query: 64  ELWLKINSEYA 74
           + + +   EY 
Sbjct: 248 DDFQEKMVEYC 258


>gi|167766696|ref|ZP_02438749.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1]
 gi|167711633|gb|EDS22212.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1]
 gi|291558362|emb|CBL37162.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SSC/2]
          Length = 495

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++V E C  C    C+EVCP       + +  I  ++CI CG C+  CP  AI 
Sbjct: 112 AFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCPYGAIY 166



 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C +VCP    YE +                     I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKC--GQCKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCG 200

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 201 MCMVNCPFGAI 211


>gi|257372947|ref|YP_003175721.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257167671|gb|ACV49363.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 257

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M+Y     C  C++  CV+VCPV+  Y+ E+ +  I  D+CI C  C   CP +A   + 
Sbjct: 64  MSYQ-PTACQHCENAPCVKVCPVNATYKREDGIVEIDYDKCIGCRYCMAACPYNARVFNW 122

Query: 60  EPGLE 64
           +    
Sbjct: 123 DEPQH 127


>gi|220932902|ref|YP_002509810.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halothermothrix orenii H 168]
 gi|219994212|gb|ACL70815.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halothermothrix orenii H 168]
          Length = 370

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E C  C+   CV+ CP +     +    I  + CI CG C   CP DAIK   E   
Sbjct: 191 IDEEKCEKCRK--CVKFCPENAITINKETSTIDQNLCIGCGECVVTCPTDAIKIQWESTS 248

Query: 64  ELWLKINSEYATQWPNITTKKE 85
           +   +   E++  +  I  KK+
Sbjct: 249 QGVQERIVEFS--YGIIKEKKD 268


>gi|88603039|ref|YP_503217.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188501|gb|ABD41498.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 369

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +    C+ C +  CV  CP D  + G+    +    C  C  C   CP  AI    E  +
Sbjct: 192 INESRCVGCGY--CVTQCPFDAIHMGK-KATVDKSVCYGCSACLQVCPEQAILFHWERDV 248

Query: 64  ELWLKINSEYA 74
             +L+  +EYA
Sbjct: 249 PRFLERMAEYA 259


>gi|261601245|gb|ACX90848.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 398

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E  +  
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGVMSK 109



 Score = 33.8 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 15/69 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG----------VCEPECPVDAIK 56
           + CI C    C   CP +        +     +C  C            C   CP  A+ 
Sbjct: 82  DKCIGC--GFCTWACPYEALKFNNEGV---MSKCHFCYDRLAEGKGIPYCVEACPTGALA 136

Query: 57  PDTEPGLEL 65
                  E 
Sbjct: 137 FGWIEKGEA 145


>gi|167629699|ref|YP_001680198.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592439|gb|ABZ84187.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 493

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT  C  C    C+E CPVD   +      I+  +CI+CG C   CP  AI     P
Sbjct: 110 FTVTGACRGCITHRCIEACPVDAIAQINRLAYINQQKCIECGRCHQVCPYGAITDMQRP 168



 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
            Y+  + CI C                  C++ CPV     GE+ +A I P++C+ CG C
Sbjct: 140 AYINQQKCIECGRCHQVCPYGAITDMQRPCIKACPVKAIQYGEDKIARIDPNKCVSCGHC 199

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 200 AVSCPFGAI 208


>gi|147668913|ref|YP_001213731.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Dehalococcoides sp. BAV1]
 gi|146269861|gb|ABQ16853.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Dehalococcoides sp. BAV1]
          Length = 312

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C +  C +VCPV   ++  +  + I    CI C  C   CP  A   D     
Sbjct: 146 PCMHCDNPPCTQVCPVGATFKQADGIVVIDYQRCIGCRFCIVACPYTARTMDYGDNY 202


>gi|302390415|ref|YP_003826236.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302201043|gb|ADL08613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 372

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V   NC  C    C++ CP +     +    I P++C+ CG C   C    IKP  + 
Sbjct: 189 PFVDK-NCRKCL--SCIKNCPEEAISLVDGAAYIDPEKCVGCGECISMCYFGVIKPQWKT 245

Query: 62  GLELWLKINSEYA 74
               +++  +E+A
Sbjct: 246 DNREFIERMTEHA 258


>gi|227355469|ref|ZP_03839865.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|227164456|gb|EEI49340.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 209

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y +T +C  C    CV+ CP    ++  G+  + +   +C+ CG C   CP  A + +T
Sbjct: 71  AYTLTISCNHCDDPICVKNCPTTAMHKRPGDGIVRVDTSKCVGCGYCSWSCPYGAPQMNT 130

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           E G         +   +  N         +A K   +K    KY
Sbjct: 131 ETGQMSKCDFCVDLLAEGKNPICVDTCPLNAIKFGKIKDLRAKY 174


>gi|323483907|ref|ZP_08089282.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum
           WAL-14163]
 gi|323693503|ref|ZP_08107710.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402745|gb|EGA95068.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum
           WAL-14163]
 gi|323502460|gb|EGB18315.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673]
          Length = 484

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C   CP      G N   I PD+C +CG C   CP +AI     P
Sbjct: 94  SYTVTDNCRKCMGKACQSSCPFGAITMGNNKAFIDPDKCRECGKCATACPYNAIAHLERP 153



 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + C  C                  C +VCPVD     E  +  I   +CI CG C
Sbjct: 125 AFIDPDKCRECGKCATACPYNAIAHLERPCKKVCPVDAITYDEYGICVIDEKKCIQCGAC 184

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 185 IHSCPFGAI 193


>gi|160934322|ref|ZP_02081709.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753]
 gi|156866995|gb|EDO60367.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753]
          Length = 368

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV+ E C+ C+   C + C  D     +    I+   C  CG C   C  DAIK     
Sbjct: 190 PYVIQEQCVGCR--VCAKSCAHDAISFTDKKANINHSLCAGCGRCIGVCHRDAIK---PA 244

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
             E +  +N + A     +  K+  
Sbjct: 245 DDESFDILNQKVAEYTKAVVDKRPC 269


>gi|55378014|ref|YP_135864.1| molybdopterin oxidoreductase [Haloarcula marismortui ATCC 43049]
 gi|55230739|gb|AAV46158.1| molybdopterin oxidoreductase [Haloarcula marismortui ATCC 43049]
          Length = 276

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C++  CV+VCPV+  Y  ++ +  I  D+CI C  C   CP +A   + +    
Sbjct: 70  ACQHCENAPCVKVCPVNATYTRDDGIVEIDYDKCIGCRYCMAACPYNARVFNWDEPDH 127


>gi|303327208|ref|ZP_07357650.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863196|gb|EFL86128.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 364

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C    CV+ CP       +    +  + CI C  C   CPV AI  D    +
Sbjct: 190 VDEKTCVGC--GKCVKACPQKALSLRKKKSQVDVNRCIGCFECITVCPVKAISLDWATEM 247

Query: 64  ELWLKINSEYA 74
             +++  +EYA
Sbjct: 248 TPFMERLTEYA 258


>gi|149927499|ref|ZP_01915753.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp.
           MED105]
 gi|149823772|gb|EDM82998.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp.
           MED105]
          Length = 820

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   C++ CP D     E    +  D CI CG C   CP +AI+   +P    
Sbjct: 693 SCRHCEQPHCMKDCPPDAIRRNEKGEVMIADTCIGCGNCAKNCPYNAIELRVKPPPRK 750


>gi|218778463|ref|YP_002429781.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759847|gb|ACL02313.1| Sulfite reduction-associated complex , DsrO [Desulfatibacillum
           alkenivorans AK-01]
          Length = 271

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV VCP    ++ E+ + I     CI C  C   CP  +   + +      L
Sbjct: 133 CNQCENPACVRVCPTKATFQREDGIVIMDFHRCIGCRFCMAACPYGSRSFNFKDPRIASL 192

Query: 68  KINSEYATQWPNITTK 83
           +IN E+ T+   +  K
Sbjct: 193 EINPEFPTRMKGVVEK 208


>gi|94266321|ref|ZP_01290023.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93453075|gb|EAT03554.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 270

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + V + C  C    CV VCP    Y+  + +  +    CI CG C   CP  A     E
Sbjct: 137 FFVPKLCNQCDKPSCVSVCPAGATYKTNDGVVLVDQSWCIGCGYCITNCPYGARFFHPE 195


>gi|237736591|ref|ZP_04567072.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229420453|gb|EEO35500.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 642

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C   + +    I  D C  CG C   CPV AI    
Sbjct: 217 FRITEKCIGC--TACARVCPVKCIDGKLKEKHTIDTDRCTHCGQCVAACPVGAIFEGD 272



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           + T+ C  C    CV  CPV   +EG++ L
Sbjct: 248 IDTDRCTHC--GQCVAACPVGAIFEGDHTL 275


>gi|73748057|ref|YP_307296.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dehalococcoides sp. CBDB1]
 gi|73659773|emb|CAI82380.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dehalococcoides sp. CBDB1]
          Length = 312

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C +  C +VCPV   ++  +  + I    CI C  C   CP  A   D     
Sbjct: 146 PCMHCDNPPCTQVCPVGATFKQADGTVVIDYQRCIGCRFCIVACPYTARTMDYGDNY 202


>gi|117925006|ref|YP_865623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Magnetococcus sp. MC-1]
 gi|117608762|gb|ABK44217.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Magnetococcus sp. MC-1]
          Length = 243

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV+VCP +  +  ++ L  +    CI C  C   CP  A             
Sbjct: 102 CNHCENPPCVDVCPTNASFIRKDGLVLVDKHRCIGCRYCMIACPYKARSLVYHENTTPKD 161

Query: 68  KINSE 72
           ++N E
Sbjct: 162 QLNRE 166


>gi|294495829|ref|YP_003542322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292666828|gb|ADE36677.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 369

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  E C  C    CVEVCP D      +N   I  D+CI CG C   CPV+AI  + E  
Sbjct: 191 IDAEICNGC--ATCVEVCPCDAMEINNDNISTIDDDKCIGCGECMTVCPVEAIGFNYE-N 247

Query: 63  LELWLKINSEYA 74
           +  ++++ +EYA
Sbjct: 248 IPDFMEMMTEYA 259


>gi|253579276|ref|ZP_04856546.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849374|gb|EES77334.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 505

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +TE C  C    CVEVCP    +       I  D CI CG C   CP +AI     P
Sbjct: 115 ITEGCQGCLEHPCVEVCPKKAVHMEGGRSHIDEDACIKCGKCLEACPYNAIIKQERP 171



 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  + CI C    C+E CP +   + E                     I  D+C+ CG
Sbjct: 143 SHIDEDACIKC--GKCLEACPYNAIIKQERPCSKACGMNAIGSDEYGRAEIDQDKCVSCG 200

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 201 QCLVSCPFSAI 211


>gi|197285065|ref|YP_002150937.1| anaerobic dimethyl sulfoxide reductase subunit B [Proteus mirabilis
           HI4320]
 gi|194682552|emb|CAR42565.1| putative anaerobic dimethyl sulfoxide reductase chain B [Proteus
           mirabilis HI4320]
          Length = 209

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y +T +C  C    CV+ CP    ++  G+  + +   +C+ CG C   CP  A + +T
Sbjct: 71  AYTLTISCNHCNDPICVKNCPTTAMHKRPGDGIVRVDTSKCVGCGYCSWSCPYGAPQMNT 130

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           E G         +   +  N         +A K   +K    KY
Sbjct: 131 ETGQMSKCDFCVDLLAEGKNPICVDTCPLNAIKFGKIKDLRAKY 174


>gi|118602832|ref|YP_904047.1| twin-arginine translocation pathway signal [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567771|gb|ABL02576.1| Twin-arginine translocation pathway signal [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 243

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  CK   CV+VCP +   + E+ +  +    CI C  C   CP DA     E
Sbjct: 109 CQHCKEPPCVDVCPTNASMKREDGIVLVDKHLCIGCRYCMMACPYDARSFVHE 161


>gi|326384264|ref|ZP_08205946.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326197129|gb|EGD54321.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 546

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 18 VEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWL 67
          + VCPV+C +   +         L I P+ CIDCG C  ECPV AI PD       E +L
Sbjct: 1  MAVCPVNCIHPTPDEPDFLTAEMLYIDPETCIDCGACIDECPVSAIYPDDQLPEKEEPFL 60

Query: 68 KINSEYATQWPN----ITTKKES-LPSAA 91
          +IN++Y          +   K   LP   
Sbjct: 61 QINADYYKDHDVEGGLVRHPKAPKLPDEE 89


>gi|289432084|ref|YP_003461957.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
 gi|288945804|gb|ADC73501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
          Length = 312

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C +  C +VCPV   ++  +  + I    CI C  C   CP  A   D     
Sbjct: 146 PCMHCDNPPCTQVCPVGATFKQADGTVVIDYQRCIGCRFCIVACPYTARTMDYGDNY 202


>gi|94269933|ref|ZP_01291606.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93451006|gb|EAT01977.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 270

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + V + C  C    CV VCP    Y+  + +  +    CI CG C   CP  A     E
Sbjct: 137 FFVPKLCNQCDKPSCVSVCPAGATYKTNDGVVLVDQSWCIGCGYCITNCPYGARFFHPE 195


>gi|83590444|ref|YP_430453.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573358|gb|ABC19910.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Moorella thermoacetica ATCC 39073]
          Length = 258

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++V   C  C    CV VCP    ++ ++ +  I    CI C  C   CP  A   +  
Sbjct: 115 PFIV--LCNHCDKPPCVRVCPTRATFKRQDGIVMIDYHRCIGCRYCMAACPYGARSFNFR 172

Query: 61  PGLELWLKINSEYATQWPNITTK 83
                  ++N  Y T+   +  K
Sbjct: 173 DPRPYIKELNPAYPTREKGVVEK 195


>gi|295106606|emb|CBL04149.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 215

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++  C  C    C  VCP    ++ +  L      +CI CG C   CP  A   D
Sbjct: 67  AYHLSLACNHCGDPACTRVCPTGAMHKDDRGLVWPDERKCIGCGYCTMACPYHAPFID 124


>gi|118444967|ref|YP_878935.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT]
 gi|118135423|gb|ABK62467.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT]
          Length = 494

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +TE C  C    C+EVCPV    +      I+ D C +CG+C+  CP +AI
Sbjct: 103 YTITEACRGCVQHKCMEVCPVKAITKINGRAYINQDVCRECGMCKQVCPYNAI 155


>gi|332702846|ref|ZP_08422934.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552995|gb|EGJ50039.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 337

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE+C  C    C E CP       ++   +   +C+ CGVC   C   A+  + EP  
Sbjct: 265 VETEHCAGC--GACTEACPFGAMGIRDDHAWVDEKQCMGCGVCLTRCDHQALHLEREPSR 322

Query: 64  ELWLKINSEYATQWP 78
              L+I +    + P
Sbjct: 323 GDPLEIEALLNAKSP 337


>gi|289675306|ref|ZP_06496196.1| ferredoxin [Pseudomonas syringae pv. syringae FF5]
          Length = 58

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 54  AIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           AI  + E   G+E ++++N+E A  WPNIT KK+++P AA+ DG   K  + 
Sbjct: 5   AIYSEDEIPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKTGKIAEL 56


>gi|304439876|ref|ZP_07399770.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371615|gb|EFM25227.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 501

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+NC  C    C  VCPV+    G++   I  D+C+ CG C+  CP  AI
Sbjct: 115 VTDNCRRCMAHPCTNVCPVNAVKIGKHRAEIDHDKCVKCGRCKDTCPYHAI 165


>gi|11497792|ref|NP_069014.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2650470|gb|AAB91057.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 251

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C +  CV+VCPV   ++ E+ +  +  + CI C  C   CP    + + E   + 
Sbjct: 64  PCMHCDNPPCVKVCPVGATWKREDGVVLVDFERCIGCRYCMTACPYGVRQFNWEDKDKA 122


>gi|328954388|ref|YP_004371722.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454712|gb|AEB10541.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 271

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCP    +   + +  +    CI C  C   CP  A   + +       
Sbjct: 134 CNHCDNPPCVRVCPTQATFRRPDGMVMMDMHRCIGCRYCMAACPFGARSFNWKDPRPYLK 193

Query: 68  KINSEY 73
           ++N  Y
Sbjct: 194 EVNMNY 199


>gi|221194389|ref|ZP_03567446.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC
           49626]
 gi|221185293|gb|EEE17683.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC
           49626]
          Length = 532

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + V+  C  C    C E+CP       +    I  ++CI CG+CE  CP  AI     P 
Sbjct: 123 FRVSNACQGCLAHPCREICPKGAISFVDKKAFIDQEKCIKCGMCEKVCPYHAILHHLRPC 182

Query: 63  LEL 65
            E 
Sbjct: 183 AEA 185



 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-----------------YEGENFLAIHPDECIDCG 44
            ++  E CI C    C +VCP                      +      I  ++C+ CG
Sbjct: 153 AFIDQEKCIKC--GMCEKVCPYHAILHHLRPCAEACGMHAIGSDEHGRADIDYEKCVSCG 210

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 211 QCLVNCPFGAI 221


>gi|95931130|ref|ZP_01313855.1| sigma54 specific transcriptional regulator, Fis family
          [Desulfuromonas acetoxidans DSM 684]
 gi|95132820|gb|EAT14494.1| sigma54 specific transcriptional regulator, Fis family
          [Desulfuromonas acetoxidans DSM 684]
          Length = 762

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-IKPDTEPGL 63
          V E C  C    CV  CPV       N+  +    CI CG C   C   A I  D+    
Sbjct: 8  VKERCRKCY--ACVRNCPVKAIKVKANYAEVIYPRCIGCGKCIAVCTQKAKIIADSSEET 65

Query: 64 ELWLKINSE 72
            +L    +
Sbjct: 66 RQFLATAKK 74


>gi|331270381|ref|YP_004396873.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           BKT015925]
 gi|329126931|gb|AEB76876.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           BKT015925]
          Length = 494

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +TE C  C    C+EVCP     +      I+ D C +CG+C+  CP +AI
Sbjct: 103 YTITEACRGCVQHKCMEVCPAKAITKINGRAYINQDVCRECGMCKQVCPYNAI 155


>gi|148244921|ref|YP_001219615.1| intracellular sulfur oxidation protein DsrO [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326748|dbj|BAF61891.1| intracellular sulfur oxidation protein DsrO [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 243

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV+VCP +   + E+ +  +    CI C  C   CP DA     E
Sbjct: 109 CQHCEEPPCVDVCPTNASMKREDGIVLVDKHLCIGCRYCMMACPYDARSFVHE 161


>gi|229541517|ref|ZP_04430577.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          coagulans 36D1]
 gi|229325937|gb|EEN91612.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          coagulans 36D1]
          Length = 82

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T+ CI  K  +CV+VCPVDC  EGE+   I PD CIDCG C+  CPV+AI    +
Sbjct: 5  MAFVITQPCIGEKAAECVDVCPVDCIAEGEDQYFIDPDICIDCGACQAVCPVEAIYHEEE 64

Query: 59 TEPGLELWLKINSEY 73
           E     +L+   ++
Sbjct: 65 LEEEDMAFLEKARKF 79


>gi|167760379|ref|ZP_02432506.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704]
 gi|167662052|gb|EDS06182.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704]
          Length = 382

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV  ENCI C   +C+ VC  D     +    I  D+C+ CG C   CP DA+     P
Sbjct: 204 PYVEVENCIGC--GNCIRVCAHDAPKITDRKAFIDHDKCVGCGRCIGVCPKDAVC---PP 258

Query: 62  GLELWLKINSEYATQ 76
             E    +N + A  
Sbjct: 259 NDESNDILNKKIAEY 273


>gi|308270558|emb|CBX27170.1| hypothetical protein N47_A11990 [uncultured Desulfobacterium sp.]
          Length = 263

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  CK   CV  CP    ++  + +  +    CI C  C   CP  +   +         
Sbjct: 126 CNQCKDAPCVRACPTKATFKQADGIVAMDFHRCIGCRFCMAACPYGSRSFNFRDPRPFVK 185

Query: 68  KINSEYATQWPNITTK 83
           +IN ++ T+   +  K
Sbjct: 186 EINKKFPTRARGVVEK 201


>gi|229585998|ref|YP_002844500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|228021048|gb|ACP56455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 398

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E  +  
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGIMTK 109


>gi|153812810|ref|ZP_01965478.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174]
 gi|149831170|gb|EDM86259.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174]
          Length = 501

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+V+  C  C    C++ CP       +    I  D+CI CG C+  CP DAI  +  P
Sbjct: 115 YIVSNMCRGCVAHPCMQACPKGAISMKDGKSYIDQDKCIKCGKCKAACPYDAISHNIRP 173



 Score = 39.2 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
           +Y+  + CI C    C   CP D                      +   +I  D+C+ CG
Sbjct: 145 SYIDQDKCIKC--GKCKAACPYDAISHNIRPCEQACGVKAIGSDEQGRASILEDKCVSCG 202

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 203 MCMVSCPFGAI 213


>gi|329898162|ref|ZP_08272360.1| Ferredoxin [gamma proteobacterium IMCC3088]
 gi|328920884|gb|EGG28320.1| Ferredoxin [gamma proteobacterium IMCC3088]
          Length = 56

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 52  VDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +DAI  + E      ++L++N+E A  WPNI+  KE+   A +  G   K +
Sbjct: 1   MDAIFSEDELPEDQAVFLELNAELAEVWPNISEMKEAPADAEEWTGKPNKLQ 52


>gi|307596268|ref|YP_003902585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307551469|gb|ADN51534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 263

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  C++  CV VCP    Y+   +  + I+ + CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFHCRNPACVTVCPTGAIYKRKEDGVVVINYEVCIGCRYCENACPYGNIIFDP 129

Query: 60  EPGLELW--LKINSEYATQWPNITTKKES 86
             G+     + I+  Y    P +  +   
Sbjct: 130 VEGVSKKCVMAIDRIYDESLP-LYERIPP 157


>gi|289675307|ref|ZP_06496197.1| ferredoxin I [Pseudomonas syringae pv. syringae FF5]
          Length = 48

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 44/48 (91%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP 48
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEP
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEP 48


>gi|227501325|ref|ZP_03931374.1| hydrogenase large subunit domain protein [Anaerococcus tetradius
           ATCC 35098]
 gi|227216558|gb|EEI81964.1| hydrogenase large subunit domain protein [Anaerococcus tetradius
           ATCC 35098]
          Length = 508

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT+ C  C    CV VCP +          I  D+CI CG C   CP  AI     P  E
Sbjct: 115 VTDQCHACIGHPCVNVCPKNAVSYSAKGAYIDQDKCIKCGKCVDACPYHAINHQKRPCAE 174



 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 19/76 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-----------------YEGENFLAIHPDECIDCG 44
            Y+  + CI C    CV+ CP                      +      I+ D+C+ CG
Sbjct: 143 AYIDQDKCIKC--GKCVDACPYHAINHQKRPCAESCGVKAISSDDLGRADINEDKCVACG 200

Query: 45  VCEPECPVDAIKPDTE 60
            C   CP  AI   +E
Sbjct: 201 RCIISCPFGAISDKSE 216


>gi|227828791|ref|YP_002830571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238620983|ref|YP_002915809.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|227460587|gb|ACP39273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238382053|gb|ACR43141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 398

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E  +  
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGIMTK 109


>gi|319938422|ref|ZP_08012816.1| Fe-hydrogenase large subunit family protein [Coprobacillus sp.
           29_1]
 gi|319806338|gb|EFW03005.1| Fe-hydrogenase large subunit family protein [Coprobacillus sp.
           29_1]
          Length = 502

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C EVCP            I  ++CI CG+C   CP  AI     P
Sbjct: 114 VTDACQGCLAHPCKEVCPKGAIDIINGRSIIDQEKCIKCGLCIKNCPYGAIMKMERP 170



 Score = 41.1 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEP 48
           +  E CI C                  C + C +D     E+  A I  D+C+ CG+C  
Sbjct: 144 IDQEKCIKCGLCIKNCPYGAIMKMERPCAKACGMDAIQTDEHGHADIDYDKCVSCGMCLV 203

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 204 NCPFGAI 210


>gi|218779004|ref|YP_002430322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760388|gb|ACL02854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 403

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           V  + CI C    CVE+CP++     ++   I+   CI CG+C P+C
Sbjct: 290 VDADKCIGCN--QCVEICPMEALSLVDDKAVINHTRCIGCGLCVPKC 334


>gi|153005941|ref|YP_001380266.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029514|gb|ABS27282.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 263

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ V + C  CK T CV+VCPV   Y  ++ L  +  D CI CG C   CP  +     E
Sbjct: 129 SFFVPKMCNHCKETPCVQVCPVGASYRTQDGLVLVDGDRCIGCGYCVQACPYGSRFLSPE 188

Query: 61  PGLEL 65
                
Sbjct: 189 THTAE 193


>gi|294053608|ref|YP_003547266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coraliomargarita akajimensis DSM 45221]
 gi|293612941|gb|ADE53096.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coraliomargarita akajimensis DSM 45221]
          Length = 309

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV+VCPV+  ++ ++ +  +  + CI C  CE  CP  A + +         
Sbjct: 164 CQQCDNPPCVDVCPVEATWKEKDGIVAVDYNWCIGCRYCEAACPYHARRFNWTKPQIPKE 223

Query: 68  KIN 70
           ++N
Sbjct: 224 EVN 226


>gi|103485838|ref|YP_615399.1| cyclic nucleotide-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98975915|gb|ABF52066.1| cyclic nucleotide-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 811

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP +  + G +        CI CG C   CP   I+ +  P  +
Sbjct: 673 VPTSCRHCEHPHCMADCPPNVIHRGPDGEVFMEPGCIGCGNCMRNCPYGVIRMEAAPPPK 732

Query: 65  L 65
            
Sbjct: 733 P 733


>gi|257065142|ref|YP_003144814.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792795|gb|ACV23465.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 207

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+ +C  C +  C++VCP    ++ +N    ++ + CI CG C   CP +A K D E
Sbjct: 62  YYVSTSCQHCGNPACIKVCPTGAMHKEDNGAVLVNTERCIGCGYCHLSCPYNAPKVDRE 120


>gi|284047254|ref|YP_003397594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283951475|gb|ADB54219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 87

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K   CVEVCPVDC +   +         L I P+ECIDC  C   CPV
Sbjct: 1  MAYVIAEPCIGAKDNSCVEVCPVDCIHPTPDEPDYDRVEMLYIDPEECIDCDACVEACPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEY 73
          DA   +         + +IN+ Y
Sbjct: 61 DACFAEDQLPDEWSKYAEINANY 83


>gi|331269074|ref|YP_004395566.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
 gi|329125624|gb|AEB75569.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
          Length = 441

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 16/108 (14%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + +T+ CI C  T C +VCPV C   + +    I  ++C+ CG C   CP+ A+      
Sbjct: 25  FQITDKCIGC--TKCAKVCPVSCISGKIKEKHVIDTEKCVKCGQCISACPMGALPTID-- 80

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                      +     NI  KK  L  A     ++    +YF   PG
Sbjct: 81  -----------FTLNLKNILNKKNKLIIAQVAPSIRATLGEYFGLEPG 117


>gi|229580878|ref|YP_002839277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|228011594|gb|ACP47355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
          Length = 398

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E  +  
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGIMTK 109


>gi|210615774|ref|ZP_03290755.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787]
 gi|210150110|gb|EEA81119.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787]
          Length = 502

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V++ C  C    C EVCPV      +    I  ++CI CG C+  CP DAI     P
Sbjct: 116 YEVSDMCKGCVAHPCREVCPVGAISMKKGRSYIDQEKCIKCGKCKSVCPYDAISKKERP 174



 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     I  D+C+ CG
Sbjct: 146 SYIDQEKCIKC--GKCKSVCPYDAISKKERPCAKACGVNAIGSDKMGRAHIDNDKCVSCG 203

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 204 MCMVSCPFGAI 214


>gi|227831524|ref|YP_002833304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|229580472|ref|YP_002838872.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284999076|ref|YP_003420844.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227457972|gb|ACP36659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|228011188|gb|ACP46950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284446972|gb|ADB88474.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|323475826|gb|ADX86432.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
 gi|323478601|gb|ADX83839.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 398

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E  +  
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGIMTK 109


>gi|288930526|ref|YP_003434586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288892774|gb|ADC64311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 251

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C++  CV+VCPV   ++ E+ L  +  + CI C  C   CP    + + +   E +
Sbjct: 64  PCMHCENAPCVKVCPVGATWKREDGLVLVDFERCIGCRYCITACPYGVRQFNWQDADENF 123

Query: 67  LKINSEYATQWPNITTKKE 85
            +   E A    N    K+
Sbjct: 124 KQA-FERAGFEENWYAVKD 141


>gi|225175969|ref|ZP_03729961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168557|gb|EEG77359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 369

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 19/94 (20%)

Query: 11  LCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            CK    C++ CP D     E    I  D+CI CG C   CP  AIK   +       + 
Sbjct: 195 GCKVCSTCLKWCPADAILIMEETAEIDHDKCIGCGECTVVCPTRAIKIQWKSETVDVQER 254

Query: 70  NSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +EYA                     +K K  K 
Sbjct: 255 MAEYA------------------WGAIKDKLGKV 270


>gi|303257325|ref|ZP_07343339.1| dimethylsulfoxide reductase, chain B [Burkholderiales bacterium
           1_1_47]
 gi|302860816|gb|EFL83893.1| dimethylsulfoxide reductase, chain B [Burkholderiales bacterium
           1_1_47]
          Length = 201

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    CV+VCP    ++   +  + I   +CI CG+C   CP  A   D  
Sbjct: 61  YYVSLGCNHCSDPACVKVCPTKAHHKRAEDGLVVIDATKCIGCGLCAQACPYYAPVLDET 120

Query: 61  PGLE 64
               
Sbjct: 121 AHKM 124


>gi|51893221|ref|YP_075912.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856910|dbj|BAD41068.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
          Length = 256

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C+ C    C  VCPV   Y+GE+  + I  D CI C  C   CP  A   D     
Sbjct: 101 VPRPCMQCDSPPCAGVCPVGATYKGESGIVVIDDDRCIGCRYCIAACPYGARSFDFGENY 160

Query: 64  ELWL 67
           +  L
Sbjct: 161 DEML 164


>gi|317152091|ref|YP_004120139.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316942342|gb|ADU61393.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 256

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  CK+  CV VCP    Y+  + +  +    CI C  C   CP  +   +     +   
Sbjct: 117 CNHCKNPPCVRVCPTKATYKRPDGIVDMDYHRCIGCRYCMAGCPYGSRSFNWGEPRDHLD 176

Query: 68  --KINSEY 73
              +N EY
Sbjct: 177 LNNLNKEY 184


>gi|297526112|ref|YP_003668136.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
 gi|297255028|gb|ADI31237.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
          Length = 329

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V E CI C   +C++VCP +      N   I+   C  C  C   CP  AI+   +
Sbjct: 72  IVEEKCINC--GECMKVCPFNAVELINNKYVINKWICEGCYTCSFVCPTKAIRMIRD 126


>gi|302339761|ref|YP_003804967.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636946|gb|ADK82373.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +VT+ C  C    C  VCP +     E    I  D+CI C  C   CP  AI     P  
Sbjct: 126 IVTDKCQSCMAHPCSIVCPRNAITFPEGKAHIDQDKCIKCMKCVQVCPYSAITRMVRPCA 185

Query: 64  EL 65
           E 
Sbjct: 186 EA 187



 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 19/82 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++  + CI C    CV+VCP                        E F  I    C+ CG
Sbjct: 155 AHIDQDKCIKC--MKCVQVCPYSAITRMVRPCAEACGVGAIDSDEEGFARIDQKVCVSCG 212

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C   CP  AI   +E     +
Sbjct: 213 LCTVSCPFGAISDKSEIVQVTF 234


>gi|170717615|ref|YP_001784697.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Haemophilus somnus 2336]
 gi|168825744|gb|ACA31115.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haemophilus
           somnus 2336]
          Length = 245

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV+VCPV   Y+ ++  + I    CI C  C   CP DA   ++E
Sbjct: 99  CNHCDNPPCVQVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDARFINSE 151


>gi|170782509|ref|YP_001710842.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157078|emb|CAQ02253.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
          Length = 108

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT V+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTCVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 +   N E+  
Sbjct: 61 LPEKWSDYYTANVEFFA 77


>gi|51246231|ref|YP_066115.1| hydrogenase [Desulfotalea psychrophila LSv54]
 gi|50877268|emb|CAG37108.1| related to hydrogenase [Desulfotalea psychrophila LSv54]
          Length = 483

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C++ CP D     +    I  + CI+CG C   CP  AI     P
Sbjct: 113 YEVTNACQGCLAQACIQSCPKDAITMVQGKSHIDSNLCINCGKCLKVCPYHAIVQIPIP 171



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
           +++ +  CI C                  C   CP+    +  +    I  D CI CG C
Sbjct: 143 SHIDSNLCINCGKCLKVCPYHAIVQIPIPCEVACPIGAISKDVSGRQVIDYDLCIFCGKC 202

Query: 47  EPECPVDAI 55
             +CP  A+
Sbjct: 203 MAQCPFAAV 211


>gi|317485201|ref|ZP_07944082.1| dimethylsulfoxide reductase [Bilophila wadsworthia 3_1_6]
 gi|316923492|gb|EFV44697.1| dimethylsulfoxide reductase [Bilophila wadsworthia 3_1_6]
          Length = 209

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C++  C E CP    ++ EN +  + PD C+ C  CE  CP  A + D E
Sbjct: 60  AYYVSLSCNHCENPVCAEACPTQAMHKDENGIVSVDPDRCVGCRYCEWNCPYGAPQFDPE 119


>gi|313679324|ref|YP_004057063.1| phenylacetyl-CoA:acceptor oxidoreductase padc subunit
           [Oceanithermus profundus DSM 14977]
 gi|313152039|gb|ADR35890.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Oceanithermus profundus DSM 14977]
          Length = 298

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV VCPV   ++ ++ +  I  D CI C  C   CP  A   D        
Sbjct: 130 PCMQCDKPPCVPVCPVGATWKRKDGIVEIDYDACIGCRYCITACPYSARTFDFGENWTDA 189

Query: 67  LKINSE--YATQWPNITTKKESLPSAAKMDGVKQ 98
                +   A +   I  +  +       +  + 
Sbjct: 190 AAAGKDGPLALETGRIYEELPNFEYGETWERGEG 223


>gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+ + CI C  T C  VCPV C   + +    I  D+CI CG C  +C   AI
Sbjct: 560 YVINDKCIGC--TACARVCPVSCIEGKVKEKHVIEQDKCIKCGACYDKCKFSAI 611


>gi|268591053|ref|ZP_06125274.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291313858|gb|EFE54311.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 205

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++ +C  C+   CV+VCP    ++ E+  + +    CI C  C   CP  A + D+E
Sbjct: 60  SYYLSISCNHCEDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQFDSE 119


>gi|238750629|ref|ZP_04612129.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
 gi|238711277|gb|EEQ03495.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
          Length = 205

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++  + ++ D CI C  C   CP  A + D E
Sbjct: 60  AYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDAE 119


>gi|302340131|ref|YP_003805337.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637316|gb|ADK82743.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 447

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +V   CI C H  C+  CP +          + P+ C+DCG C   CPVDAI  + +   
Sbjct: 12 IVEAKCIGCTH--CMLTCPTEAIRVFGGKAHVDPNRCVDCGNCMSVCPVDAIVIEQDDFD 69

Query: 64 ELW 66
          +++
Sbjct: 70 QIY 72


>gi|295110160|emb|CBL24113.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus obeum A2-162]
          Length = 501

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+V+  C  C    C++ CP       +    I  D+CI CG C+  CP DAI  +  P
Sbjct: 115 YIVSNMCRGCVAHPCMQACPKGAISMKDGKSYIDQDKCIKCGKCKASCPYDAISHNVRP 173



 Score = 39.2 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
           +Y+  + CI C                  C + C V      E    +I  D+C+ CG+C
Sbjct: 145 SYIDQDKCIKCGKCKASCPYDAISHNVRPCEQACGVKAIGSDEQGRASILEDKCVSCGMC 204

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 205 MVSCPFGAI 213


>gi|242239680|ref|YP_002987861.1| dimethylsulfoxide reductase, chain B [Dickeya dadantii Ech703]
 gi|242131737|gb|ACS86039.1| dimethylsulfoxide reductase, chain B [Dickeya dadantii Ech703]
          Length = 205

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++ G+NF+ +    CI C  CE  CP  A + D
Sbjct: 60  AYYLSVSCNHCSDPACTKVCPTGAMHKQGDNFVVVDESICIGCRYCEMACPYGAPQFD 117


>gi|197122842|ref|YP_002134793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172691|gb|ACG73664.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 326

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV+ CP    + E +  + I  D CI C  C   CP  A   +         
Sbjct: 181 CQQCRNPPCVKACPTQATWKEQDGIVVIDYDWCIGCRCCMSACPYGARHFNWATPNLPAE 240

Query: 68  KIN 70
           ++N
Sbjct: 241 ELN 243


>gi|218283672|ref|ZP_03489633.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989]
 gi|218215661|gb|EEC89199.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989]
          Length = 505

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            VT  C  C    C EVCP D  +       I  ++CI CG C   CP  AI
Sbjct: 116 FVTNACQGCLSHQCTEVCPKDAIHIVNGKSCIDQEKCIKCGRCMDACPYHAI 167



 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCGVC 46
           +  E CI C    C++ CP     +                  +    I  D+C+ CG+C
Sbjct: 147 IDQEKCIKC--GRCMDACPYHAITKLERPCAASCGMDAIKSDADGKAEIDYDKCVSCGMC 204

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 205 LVNCPFGAI 213


>gi|220917624|ref|YP_002492928.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955478|gb|ACL65862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 326

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV+VCP    + E +  + +  D CI C  C   CP  A   +         
Sbjct: 181 CQQCRNPPCVKVCPTQATWKEQDGIVVVDYDWCIGCRCCMSACPYGARHFNWATPNLPAE 240

Query: 68  KIN 70
           ++N
Sbjct: 241 ELN 243


>gi|328955718|ref|YP_004373051.1| hydrogenase large subunit domain protein [Coriobacterium glomerans
           PW2]
 gi|328456042|gb|AEB07236.1| hydrogenase large subunit domain protein [Coriobacterium glomerans
           PW2]
          Length = 517

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C E+CP       +    I  D CI+CG C   CP  AI     P
Sbjct: 121 YEVTNMCQGCLAHPCREICPTGAVTFVDKKAHIDKDACINCGRCASICPYTAIAHRERP 179



 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-----------------YEGENFLAIHPDECIDCG 44
            ++  + CI C    C  +CP                      +      I  D C+ CG
Sbjct: 151 AHIDKDACINC--GRCASICPYTAIAHRERPCAAACGMNAIASDEWGRAEIDYDRCVSCG 208

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 209 QCLVNCPFGAI 219


>gi|89896469|ref|YP_519956.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335917|dbj|BAE85512.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 206

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  CV+VCPV   Y+ E   + I+ D CI C  C   CP +A   + E  +  
Sbjct: 65  ACQHCENAACVKVCPVGATYKDELGRVVINYDRCIGCRFCMAACPYNARVFNWEEPVRD 123


>gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
 gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
          Length = 595

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +  + CI C    C   CPV+    E +    I  D+CI CG C   C  +AI
Sbjct: 539 TYTILPDKCIGC--GVCARRCPVNAITGERKQPHVIDQDKCIKCGACYEACKFNAI 592



 Score = 37.3 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + CP     E      I PD+CI CGVC   CPV+AI  +
Sbjct: 526 EKRCPTGKCVE-LVTYTILPDKCIGCGVCARRCPVNAITGE 565


>gi|90426047|ref|YP_534417.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris BisB18]
 gi|90108061|gb|ABD90098.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris BisB18]
          Length = 205

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 2  TYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          TY +T    C  C+   C  VCPVD     +  + ++   CI C +C   CP  AI
Sbjct: 42 TYEITAPVQCRHCEDAPCARVCPVDAIKLTDGQVVLNEQTCIGCKMCAIACPFGAI 97


>gi|126178316|ref|YP_001046281.1| hypothetical protein Memar_0366 [Methanoculleus marisnigri JR1]
 gi|125861110|gb|ABN56299.1| protein of unknown function DUF362 [Methanoculleus marisnigri JR1]
          Length = 392

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+  +CI C    C  +CPV      E    I    CI C  C   C   AI
Sbjct: 327 VIASSCIGC--GKCERICPVHAITVAEGKATIDLSRCIRCYCCHEMCTEHAI 376


>gi|254818988|ref|ZP_05223989.1| putative ferredoxin FdxA [Mycobacterium intracellulare ATCC
          13950]
          Length = 106

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 14 HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINS 71
             CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +      L+  L  N+
Sbjct: 2  DRACVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDDLPEDLQPHLADNA 61

Query: 72 E-YATQWPNITTKKESLPSAAKM 93
            +A   P       S   AAK+
Sbjct: 62 AFFAETLPGRDEPLGSPGGAAKV 84


>gi|253680886|ref|ZP_04861689.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           D str. 1873]
 gi|253562735|gb|EES92181.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           D str. 1873]
          Length = 494

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +TE C  C    C+EVCP     +      I+ D C +CG+C+  CP +AI
Sbjct: 103 YTITEACRGCVQHKCMEVCPAKAINKINGRAYINQDACRECGMCKQVCPYNAI 155


>gi|154483117|ref|ZP_02025565.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC
           27560]
 gi|149735925|gb|EDM51811.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC
           27560]
          Length = 504

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +T  C  C    C+EVCP D     +    I  D+CI CG C   CP +A+     P
Sbjct: 114 FITNACQGCLEHPCIEVCPKDAIKMVKGRSVIDQDKCIKCGKCASACPYNAVVKQERP 171



 Score = 38.8 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    C   CP +   + E                     I  D+C+ CG+C
Sbjct: 145 IDQDKCIKC--GKCASACPYNAVVKQERPCAKACGMNAIKSDEYGRADIDYDQCVSCGMC 202

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 203 LVSCPFSAI 211


>gi|258404376|ref|YP_003197118.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796603|gb|ACV67540.1| membrane-bound menaquinol oxidoreductase, periplasmic ferredoxin
           subunit [Desulfohalobium retbaense DSM 5692]
          Length = 258

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCP    ++ E+ +  +    CI C  C   CP  A   +         
Sbjct: 121 CNHCDNPPCVRVCPTRATFQREDGIVMMDFHRCIGCRYCMAGCPFGARSFNFGDPRPHIE 180

Query: 68  KINSEYATQWPNITTK 83
           + N+E+  +   +  K
Sbjct: 181 EENTEFPARMKGVVEK 196


>gi|221636035|ref|YP_002523911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157849|gb|ACM06967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomicrobium roseum DSM 5159]
          Length = 510

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C    CV +CP    +   + +     D CI C  C   CP DA+  D
Sbjct: 57  RCNHCDDAPCVTICPTKALFRRPDGIVDFDADRCIGCKSCMQACPYDALYID 108



 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 9/59 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAI 55
              + CI CK   C++ CP D  Y                 V       C   CP  AI
Sbjct: 85  FDADRCIGCK--SCMQACPYDALYIDPITRTAAKCNYCSHRVDQGLLPACVVVCPEKAI 141


>gi|114320816|ref|YP_742499.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227210|gb|ABI57009.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 261

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C H  CV+VCP     +  + +  +    CI C  C   CP  A     EP  E
Sbjct: 124 CQHCAHPPCVQVCPTGASMQRADGIVQVDKHLCIGCRYCMMACPYKARSFVHEPVTE 180


>gi|328951909|ref|YP_004369243.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452233|gb|AEB08062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 181

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   CV VCP    Y  E + A+    CI C +C   CP  AI 
Sbjct: 64  CRQCQDAPCVRVCPTGATYRTETYTAVDQARCIGCRLCMMVCPFGAIH 111


>gi|325968088|ref|YP_004244280.1| Fe-S-cluster-containing hydrogenase components 1 [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707291|gb|ADY00778.1| Fe-S-cluster-containing hydrogenase components 1 [Vulcanisaeta
           moutnovskia 768-28]
          Length = 263

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  CK+  CV VCP    Y+   +  + I+ + CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFQCKNPACVTVCPTGAIYKRREDGVVVINYEVCIGCRYCENACPYGNIIFDP 129

Query: 60  EPGLELW--LKINSEYATQWPNITTKKES 86
             G+     + I+  Y    P +  +   
Sbjct: 130 VEGVSKKCVMAIDRVYDESLP-LYERVPP 157


>gi|291532617|emb|CBL05730.1| Uncharacterized Fe-S center protein [Megamonas hypermegale ART12/1]
          Length = 375

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T+ C+ C    C  +C        +    I PD+C+ CG C   C  DAIK       
Sbjct: 193 VDTDKCVGC--GACSRICAHGAPIITDRKCYIDPDKCLGCGRCIGACHFDAIK---PTNW 247

Query: 64  ELWLKINSEYATQWPNI 80
                +N   A     I
Sbjct: 248 NAEDLLNRRMAEYAHAI 264


>gi|300856866|ref|YP_003781850.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM
           13528]
 gi|300436981|gb|ADK16748.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM
           13528]
          Length = 495

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VTE C  C    C+EVCP     + +    I+ D C +CG+C+  CP +AI
Sbjct: 104 YRVTEACRGCIQHKCMEVCPAKAISKVDGRAHINQDICKECGMCKKVCPYNAI 156


>gi|219667677|ref|YP_002458112.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537937|gb|ACL19676.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 206

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  CV+VCPV   Y+ E+  + I+ D CI C  C   CP +A   + E  +  
Sbjct: 65  ACQHCENAACVKVCPVGATYKDESGRVVINYDRCIGCRFCMAACPYNARVFNWEEPVRD 123


>gi|242277663|ref|YP_002989792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120557|gb|ACS78253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 259

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLEL 65
           C  C+   CV VCP    ++  + +  +    CI C  C   CP  A             
Sbjct: 120 CNHCESPSCVRVCPTKATFKRPDGIVAMDYHRCIGCRYCMTGCPYGARSFNFSDPRLHMD 179

Query: 66  WLKINSEY 73
             KIN ++
Sbjct: 180 MDKINEKF 187


>gi|167748877|ref|ZP_02421004.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662]
 gi|317470283|ref|ZP_07929677.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167651847|gb|EDR95976.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662]
 gi|316902256|gb|EFV24176.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 495

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++V   C  C    C+EVCP +     + +  I  ++CI CG C+  CP  AI 
Sbjct: 112 AFIVGGECQGCMAHPCMEVCPKNAISFVDGYSYIDQEKCIKCGQCQKVCPYSAIH 166



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C +VCP    +E +                     I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKC--GQCQKVCPYSAIHERKRPCEVACGVGAIETDYAGRATINPDKCVSCG 200

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 201 MCMVNCPFGAI 211


>gi|305665378|ref|YP_003861665.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Maribacter sp. HTCC2170]
 gi|88710133|gb|EAR02365.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Maribacter sp. HTCC2170]
          Length = 373

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV+VCPV   + E +  + I  D C+ C  C   CP D  + +         
Sbjct: 229 CFHCDNPPCVDVCPVQATWREDDGLVVIDYDWCVGCRYCMAACPYDGRRFNWSRPEVPEE 288

Query: 68  KINS 71
           ++N 
Sbjct: 289 EVNK 292


>gi|238786898|ref|ZP_04630699.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
 gi|238725266|gb|EEQ16905.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
          Length = 205

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++  + ++ D CI C  C   CP  A + D E
Sbjct: 60  AYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDAE 119


>gi|156937322|ref|YP_001435118.1| sulfide reductase, subunit B [Ignicoccus hospitalis KIN4/I]
 gi|156566306|gb|ABU81711.1| sulfide reductase, subunit B [Ignicoccus hospitalis KIN4/I]
          Length = 353

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C++  C  VCPV   + E +  + +    CI C  C   CP  A   + +P  
Sbjct: 164 IPVACNQCEYPPCTMVCPVRATWQEADGIVVVDSYRCIGCRYCITACPYGARHMNWKPVT 223

Query: 64  ELWLKIN 70
              L +N
Sbjct: 224 VDALTLN 230


>gi|162453825|ref|YP_001616192.1| ferredoxin/ferredoxin--NADP reductase [Sorangium cellulosum 'So
          ce 56']
 gi|161164407|emb|CAN95712.1| Probable ferredoxin/ferredoxin--NADP reductase [Sorangium
          cellulosum 'So ce 56']
          Length = 107

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 21/96 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE-------------------GENFLAIHPDECI 41
          M YV+ E C+    T CV VCPVDC +                        L I P+ CI
Sbjct: 1  MAYVIAEPCVATCDTACVPVCPVDCIHGPLAADEISRIPEGERKTRLAGLQLYIDPESCI 60

Query: 42 DCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
           CG CE ECPV AI  + E     + + +IN+ +  
Sbjct: 61 CCGACENECPVGAIFDEDELPAEWQRYREINARFFD 96


>gi|212634995|ref|YP_002311520.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212556479|gb|ACJ28933.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 230

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C  C    CV+VCP    Y+ +  L +   D+CI C  C   CP   I  + +   
Sbjct: 49  VPTMCNHCSDAACVKVCPTGAMYKDKRGLTLQDNDKCIGCRKCMRACPYGVISYNKQKPH 108

Query: 64  ELWLKINS--EYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
             W    +  E AT  P +  KK           V  K   Y   NP   +T
Sbjct: 109 RKWQDDQALLEGATASPYMLLKK-----------VDNKVVPYL--NPERGDT 147


>gi|153005267|ref|YP_001379592.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028840|gb|ABS26608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 307

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV+ CP    ++  +  + I  D CI C  C   CP  A   +         
Sbjct: 162 CQQCRNPPCVKACPTQATWKEPDGIVVIDYDWCIGCRCCMSACPYGARHFNWATPNLPAG 221

Query: 68  KIN 70
           ++N
Sbjct: 222 ELN 224


>gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta thermophila DSM 6578]
          Length = 595

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +  + CI C    C   CPV+    E +    I  D+CI CG C   C  +AI
Sbjct: 539 TYTILPDKCIGC--GVCARRCPVNAISGERKQPHVIDQDKCIKCGACYEACKFNAI 592



 Score = 36.9 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + CP     E      I PD+CI CGVC   CPV+AI  +
Sbjct: 526 EKRCPTGKCVE-LVTYTILPDKCIGCGVCARRCPVNAISGE 565


>gi|167770142|ref|ZP_02442195.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM
           17241]
 gi|167667464|gb|EDS11594.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM
           17241]
          Length = 479

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V   C  C    C   CP       +    I  ++C++CG C   CP  AI   T P
Sbjct: 95  YHVGSACRGCIAHRCEHACPTGAISVHDGKAHIDQEKCVECGRCATACPYSAIMKYTRP 153



 Score = 41.5 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 23/93 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++  E C+ C    C   CP     +                  +N   I  D+CI CG
Sbjct: 125 AHIDQEKCVEC--GRCATACPYSAIMKYTRPCENACKIKAISMHRDNSAKIDNDKCIACG 182

Query: 45  VCEPECPVDAIKPD----TEPGLELWLKINSEY 73
            C  +CP  AI           +    + N++Y
Sbjct: 183 ACVYQCPFGAIVDKSFVLDALTMMRDSENNAKY 215


>gi|330999837|ref|ZP_08323541.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
 gi|329573608|gb|EGG55201.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
          Length = 201

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    CV+VCP    ++   +  + I   +CI CG+C   CP  A   D  
Sbjct: 61  YYVSLGCNHCSGPACVKVCPTKAHHKRAEDGLVVIDATKCIGCGLCAQACPYHAPVLDET 120

Query: 61  PGLE 64
               
Sbjct: 121 AHKM 124


>gi|325505030|dbj|BAJ83592.1| putative selenate reductase subunit B [Bacillus selenatarsenatis]
          Length = 292

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C+H  C +VCP+   Y+ E+ +  I  D+CI C  C   CP  A   D       
Sbjct: 137 PCMQCEHPPCTKVCPIGATYKSEDGIVAIDYDKCIGCRYCITACPYGARTFDWGEYHTE 195


>gi|46201666|ref|ZP_00208197.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 233

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            + V   C  C    CV+VCP     +  + +  +    CI C  C   CP  A     E
Sbjct: 89  AHSVPVMCQHCAKPACVDVCPTGASMKRADGIVLVDRHICIGCRYCMMACPYKARSFAHE 148

Query: 61  PG 62
             
Sbjct: 149 EQ 150


>gi|51246923|ref|YP_066807.1| molybdopterin oxidoreductase [Desulfotalea psychrophila LSv54]
 gi|50877960|emb|CAG37800.1| probable molybdopterin oxidoreductase [Desulfotalea psychrophila
          LSv54]
          Length = 154

 Score = 58.8 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  C++  CV VCP    +  E+   + +    CI C  C   CP  A   + E      
Sbjct: 14 CNHCENPPCVRVCPTKATFIEEHNGIVEMDYHRCIGCRFCMVACPYGARSFNWEDPRPHI 73

Query: 67 LKINSEY 73
           + N E+
Sbjct: 74 KEYNHEF 80


>gi|23099185|ref|NP_692651.1| ferredoxin [3Fe-4S][4Fe-4S] [Oceanobacillus iheyensis HTE831]
 gi|22777413|dbj|BAC13686.1| ferredoxin [3Fe-4S][4Fe-4S] [Oceanobacillus iheyensis HTE831]
          Length = 79

 Score = 58.8 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  C   K  +CVEVCPVDC  EG++   I PD CIDCG CE  CPV+AI    +
Sbjct: 1  MAFVITSPCKTEKAGECVEVCPVDCIEEGKDMFYIEPDICIDCGACEAVCPVEAIYMEDE 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 ++ +N  +   
Sbjct: 61 VPEEENEYISLNRLFFEN 78


>gi|126460106|ref|YP_001056384.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249827|gb|ABO08918.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 187

 Score = 58.8 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  CV VCP    Y   + L  I+P  CI C  C   CP +A   D E
Sbjct: 62  CQHCENAPCVTVCPTGASYRDVDGLVKINPALCIGCKYCMVACPYEARWLDEE 114


>gi|15679814|ref|NP_276932.1| hypothetical protein MTH1826 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622960|gb|AAB86292.1| unknown (contains ferredoxin domain) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 367

 Score = 58.8 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+T +C LC    CVE CPV+     E+ + I  DECI C  C   CP +    + E  +
Sbjct: 189 VITGDCNLC--GVCVEDCPVEAITLTEDGVKIEYDECIACMNCMDSCPNEVYDLNWEDDV 246

Query: 64  ELWLKINSEYA 74
             +++   EY+
Sbjct: 247 PAFIERMMEYS 257


>gi|298571367|gb|ADI87709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [uncultured
           Nitrospirae bacterium MY3-5B]
          Length = 266

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-------T 59
            C+ C+   C EVCPV   ++  + +  I  D+CI C  C   CP  A   D        
Sbjct: 111 PCMQCELPPCTEVCPVGATWKRLDGVVAIDYDKCIGCRYCLSACPYGARTSDFNEYYTEN 170

Query: 60  EPGLELWLKI-NSEYATQWPNITTKKESLPSAAK 92
            P ++ +  + N+EY   W +   KK  + +A K
Sbjct: 171 TPKIQPYELLPNNEYGKAW-SRKDKKSPVGNARK 203


>gi|225405722|ref|ZP_03760911.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme
           DSM 15981]
 gi|225042746|gb|EEG52992.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme
           DSM 15981]
          Length = 484

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVVT+NC  C    C   C       G +   I P +C  CG C   CP +AI     P
Sbjct: 93  AYVVTDNCQKCMGKACQNSCNFGAISMGRDRAYIDPAKCKSCGKCSQACPYNAIAHLERP 152



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+    C  C                  C + CPVD     E  +  I   +CI+CG C
Sbjct: 124 AYIDPAKCKSCGKCSQACPYNAIAHLERPCKKSCPVDAITYDEYGICEIDEKKCIECGNC 183

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 184 VHSCPFGAI 192


>gi|227485286|ref|ZP_03915602.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236746|gb|EEI86761.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 508

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 26/60 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT+ C  C    CV VCP +          I  D+CI CG C   CP +AI     P  E
Sbjct: 115 VTDQCHACIGHPCVNVCPKNAVSYSSKGAKIDQDKCIKCGKCVEACPYNAINHQKRPCAE 174



 Score = 41.1 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    CVE CP +     +                    +I  ++C+ CG C
Sbjct: 145 IDQDKCIKC--GKCVEACPYNAINHQKRPCAESCGVKAIKSDELGRASIDENKCVACGRC 202

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 203 IITCPFGAI 211


>gi|325661658|ref|ZP_08150282.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472185|gb|EGC75399.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 504

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I   +CI CG C+  CP DAI     P
Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNGHSYIDQSKCIKCGKCKSACPYDAIAKKERP 176



 Score = 41.5 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
           +Y+    CI C                  C   C V+     +     I  ++C+ CG+C
Sbjct: 148 SYIDQSKCIKCGKCKSACPYDAIAKKERPCARACGVNAIVSDKVGRAKIDNEKCVSCGMC 207

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 208 MVSCPFGAI 216


>gi|315925580|ref|ZP_07921790.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621121|gb|EFV01092.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 493

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +YVVT+NC  C    C+  C     + GE    I  ++C +CG+C   CP +AI  
Sbjct: 92  SYVVTDNCQNCLGKACLSACRFGAIHPGEKRSRIDANKCRECGMCATACPYNAIAH 147



 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +    C  C                  C   CPVD     E  L  I  ++CI CG C  
Sbjct: 125 IDANKCRECGMCATACPYNAIAHLVRPCKNSCPVDALTYDEMGLSVIDEEKCIRCGNCIH 184

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 185 SCPFGAI 191


>gi|15602588|ref|NP_245660.1| TTRB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721017|gb|AAK02807.1| TtrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 245

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   Y+ ++  + +  + CI C  C   CP DA   + E
Sbjct: 99  CNHCDNPPCVPVCPVQATYQRKDGIVVVDNERCIGCAYCVQACPYDARFINEE 151



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           V  E CI C +  CV+ CP D  +  E              +
Sbjct: 126 VDNERCIGCAY--CVQACPYDARFINEETKTADKCTFCTHRL 165


>gi|331084747|ref|ZP_08333835.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410841|gb|EGG90263.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 504

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I   +CI CG C+  CP DAI     P
Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNGHSYIDQSKCIKCGKCKSACPYDAIAKKERP 176



 Score = 41.5 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
           +Y+    CI C                  C   C V+     +     I  ++C+ CG+C
Sbjct: 148 SYIDQSKCIKCGKCKSACPYDAIAKKERPCARACGVNAIVSDKVGRAKIDNEKCVSCGMC 207

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 208 MVSCPFGAI 216


>gi|206889393|ref|YP_002247876.1| indolepyruvate oxidoreductase subunit IorA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741331|gb|ACI20388.1| indolepyruvate oxidoreductase subunit IorA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 596

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 21/52 (40%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV E C  CK       CP   F E +    I    C+ CG C   CP  AI
Sbjct: 542 VVKELCKGCKLCLTEFECPAIVFKEEDVKAEIDHTICVGCGCCVHICPTKAI 593


>gi|298375682|ref|ZP_06985639.1| ferredoxin 2 [Bacteroides sp. 3_1_19]
 gi|298268182|gb|EFI09838.1| ferredoxin 2 [Bacteroides sp. 3_1_19]
          Length = 459

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +   
Sbjct: 12 IDNDRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQ 69

Query: 64 ELW 66
           ++
Sbjct: 70 RIF 72


>gi|239816784|ref|YP_002945694.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239803361|gb|ACS20428.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 244

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D E  +  
Sbjct: 100 SCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCAWACPYGARELDEERQVMT 159

Query: 66  WLKI--NSEYATQWPNITTK----KESLPSAAKMDGVKQ 98
              +  +  Y    P    K    K     A     VK 
Sbjct: 160 KCTLCVDRIYDEHLPKEDRKPACVKACPTGARLFGDVKD 198


>gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 596

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+T++C  C  T CV+ CPVD  + E +    I+ D CI CG C  +CP  AI
Sbjct: 542 YVITDDCKGC--TLCVKACPVDAIHGERKAVHLINTDTCIKCGACVDKCPFKAI 593


>gi|332702093|ref|ZP_08422181.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552242|gb|EGJ49286.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 370

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  +NC  C    CVEVC        E+  +++  D C  CG C   C    ++ D    
Sbjct: 191 VHPDNCKGC--GICVEVCAPGALRMDEDKRISVDKDLCAGCGACFHACAHHGVEIDWNTD 248

Query: 63  LELWLKINSEYATQWPNITTKKESL 87
           +  +L    EYA     +T  K +L
Sbjct: 249 INEFLGRMMEYAAAT-LLTRAKPTL 272


>gi|298530704|ref|ZP_07018106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510078|gb|EFI33982.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 367

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   +C  C    C++VC        +  + + P++C+ C  C   C   A++ + E   
Sbjct: 189 VDDSHCQGC--GLCMQVCASGALTLVDEKVRMDPEKCVGCAACILVCKTGALQINWETEG 246

Query: 64  ELWLKINSEYATQWPNITTKKE 85
             +L+   EY+     ++ KK+
Sbjct: 247 NAFLERMMEYSAA--VLSRKKD 266


>gi|113461042|ref|YP_719109.1| tetrathionate reductase subunit B [Haemophilus somnus 129PT]
 gi|112823085|gb|ABI25174.1| tetrathionate reductase beta subunit [Haemophilus somnus 129PT]
          Length = 245

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   Y+ ++  + I    CI C  C   CP DA   ++E
Sbjct: 99  CNHCDNPPCVPVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDARFINSE 151


>gi|238758248|ref|ZP_04619427.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia aldovae
          ATCC 35236]
 gi|238703578|gb|EEP96116.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia aldovae
          ATCC 35236]
          Length = 172

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++  C  C    C +VCP    ++ ++  + ++ D CI C  C   CP  A + D 
Sbjct: 27 AYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDE 85


>gi|325479615|gb|EGC82707.1| 4Fe-4S binding domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 509

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 26/60 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT+ C  C    CV VCP +          I  D+CI CG C   CP +AI     P  E
Sbjct: 115 VTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVSACPYNAINHQKRPCAE 174



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 19/74 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    CV  CP +     +                     I+ D+C+ CG C
Sbjct: 145 IDQDKCIKC--GKCVSACPYNAINHQKRPCAESCGVKAISSDELGRADINEDKCVACGRC 202

Query: 47  EPECPVDAIKPDTE 60
              CP  AI   +E
Sbjct: 203 IITCPFGAISDKSE 216


>gi|93006115|ref|YP_580552.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
          cryohalolentis K5]
 gi|92393793|gb|ABE75068.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
          cryohalolentis K5]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +++ +NCI CK+TDCV VC VD F+EG NFLAI P+ CIDC +C+PEC  +AI P ++P
Sbjct: 6  AFIIGDNCIKCKYTDCVAVCLVDAFFEGLNFLAIDPNSCIDCSLCDPECSANAITPVSKP 65

Query: 62 GL 63
            
Sbjct: 66 RF 67


>gi|288869832|ref|ZP_06111989.2| Fe-hydrogenase large subunit family protein [Clostridium hathewayi
           DSM 13479]
 gi|288869437|gb|EFD01736.1| Fe-hydrogenase large subunit family protein [Clostridium hathewayi
           DSM 13479]
          Length = 491

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YVVT+NC  C    C   C       G +   I PD+C +CG C   CP +AI
Sbjct: 102 YVVTDNCQKCMGKACQNSCNFGAISMGHDRAYIDPDKCKECGKCSQACPYNAI 154



 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            Y+  + C  C                  C + CPVD     E+  + I   +CI CG C
Sbjct: 132 AYIDPDKCKECGKCSQACPYNAIADLTRPCKKSCPVDAITMDEDGIVVIDESKCIQCGAC 191

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 192 IHSCPFGAI 200


>gi|227355510|ref|ZP_03839905.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|227164306|gb|EEI49195.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 205

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+VCP    ++ E+  + ++ + CI C  C   CP  A + D 
Sbjct: 60  AYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQFDE 118


>gi|255013558|ref|ZP_05285684.1| ferredoxin 2 [Bacteroides sp. 2_1_7]
          Length = 459

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +   
Sbjct: 12 IDNDRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQ 69

Query: 64 ELW 66
           ++
Sbjct: 70 RIF 72


>gi|257066859|ref|YP_003153115.1| hydrogenase large subunit domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798739|gb|ACV29394.1| hydrogenase large subunit domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 508

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT+ C  C    CV VCP +          I  D+CI CG C   CP  AI     P  E
Sbjct: 115 VTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVAACPYQAINHQKRPCAE 174



 Score = 40.4 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 19/74 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    CV  CP       +                     I  D+C+ CG C
Sbjct: 145 IDQDKCIKC--GKCVAACPYQAINHQKRPCAESCGVKAIGSDELGRAKIDEDKCVACGRC 202

Query: 47  EPECPVDAIKPDTE 60
              CP  AI   +E
Sbjct: 203 IITCPFGAISDKSE 216


>gi|150007737|ref|YP_001302480.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503]
 gi|301310227|ref|ZP_07216166.1| ferredoxin 2 [Bacteroides sp. 20_3]
 gi|149936161|gb|ABR42858.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503]
 gi|300831801|gb|EFK62432.1| ferredoxin 2 [Bacteroides sp. 20_3]
          Length = 459

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +   
Sbjct: 12 IDNDRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQ 69

Query: 64 ELW 66
           ++
Sbjct: 70 RIF 72


>gi|256840003|ref|ZP_05545512.1| ferredoxin 2 [Parabacteroides sp. D13]
 gi|256738933|gb|EEU52258.1| ferredoxin 2 [Parabacteroides sp. D13]
          Length = 459

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +   
Sbjct: 12 IDNDRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQ 69

Query: 64 ELW 66
           ++
Sbjct: 70 RIF 72


>gi|262381755|ref|ZP_06074893.1| ferredoxin 2 [Bacteroides sp. 2_1_33B]
 gi|262296932|gb|EEY84862.1| ferredoxin 2 [Bacteroides sp. 2_1_33B]
          Length = 459

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +   
Sbjct: 12 IDNDRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQ 69

Query: 64 ELW 66
           ++
Sbjct: 70 RIF 72


>gi|288940992|ref|YP_003443232.1| DsrO protein [Allochromatium vinosum DSM 180]
 gi|10120478|gb|AAG13084.1| DsrO [Allochromatium vinosum DSM 180]
 gi|288896364|gb|ADC62200.1| DsrO [Allochromatium vinosum DSM 180]
          Length = 268

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+H  CV+VCP    ++  + +  +    CI C  C   CP  A     +P
Sbjct: 130 CQHCEHPPCVDVCPTGASFKRADGIVMVDRHLCIGCRYCMMACPYKARSFIHQP 183


>gi|160942972|ref|ZP_02090210.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445666|gb|EDP22669.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii
           M21/2]
          Length = 538

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI
Sbjct: 142 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQDKCIKCGRCVTVCPYNAI 192



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    CV VCP +   + E                     I   +C+ CG C
Sbjct: 172 IDQDKCIKC--GRCVTVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQC 229

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 230 LVNCPFGAI 238


>gi|153853057|ref|ZP_01994466.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814]
 gi|149753843|gb|EDM63774.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814]
          Length = 503

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+EVCP            I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKGAISMVNGKSYIDQEKCIKCGKCKSVCPYDAISKKERP 175



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 24/98 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     ++PD+C+ CG
Sbjct: 147 SYIDQEKCIKC--GKCKSVCPYDAISKKERPCAKACGVNAIENDKVGRAYVNPDKCVSCG 204

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
           +C   CP  AI        +++ ++    +     I  
Sbjct: 205 MCMVNCPFGAI----SDKSQIF-QLARALSEGEQIIAE 237


>gi|56964940|ref|YP_176671.1| ferredoxin [Bacillus clausii KSM-K16]
 gi|56911183|dbj|BAD65710.1| ferredoxin [Bacillus clausii KSM-K16]
          Length = 79

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M++V+   CI  K  +C EVCPVDC  EG++   I+PD CIDCG C+  CPVDAI  + E
Sbjct: 1  MSFVILSPCIGEKAGECAEVCPVDCIEEGDDQYFINPDICIDCGACQGVCPVDAIVEEYE 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 MSKED 65


>gi|167758102|ref|ZP_02430229.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704]
 gi|167663999|gb|EDS08129.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704]
          Length = 503

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+EVCP D          I  D+CI CG C+  CP DAI     P
Sbjct: 117 YEVSNMCKGCLAHPCIEVCPKDAISMVGGKSYIDQDKCIKCGKCKSVCPYDAISKKERP 175



 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  + CI C    C  VCP D   + E                     I+ D+C+ CG
Sbjct: 147 SYIDQDKCIKC--GKCKSVCPYDAISKKERPCQKACGVGAIESDNMGRAHINNDKCVSCG 204

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 205 MCMVSCPFGAI 215


>gi|312141555|ref|YP_004008891.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|325677227|ref|ZP_08156893.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707]
 gi|311890894|emb|CBH50213.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|325551924|gb|EGD21620.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707]
          Length = 546

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)

Query: 18 VEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWL 67
          ++VCPV+C +   +         L I P  CIDCG C  ECPVDAI  + E      ++ 
Sbjct: 1  MDVCPVNCIHPTPDEPEFATTEMLYIDPQTCIDCGACVDECPVDAIFGENELSEAHSMYP 60

Query: 68 KINSEYATQWP 78
          +IN+ Y  + P
Sbjct: 61 EINAAYFEKHP 71


>gi|224370248|ref|YP_002604412.1| HmeE2 [Desulfobacterium autotrophicum HRM2]
 gi|223692965|gb|ACN16248.1| HmeE2 [Desulfobacterium autotrophicum HRM2]
          Length = 274

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++VT  C  CK+  CV+ CP    ++ ++ +  +    CI C  C   CP  +   +  
Sbjct: 132 PFLVT--CNHCKNAPCVQACPTQATFKRDDGIVLMDFHRCIGCRFCMAACPFGSRSFNFR 189

Query: 61  PGLELWLKINSEYATQWPNITTK 83
                  ++N ++ T+   +  K
Sbjct: 190 DPRPFIDEVNPDFPTRTKGVVEK 212


>gi|51891249|ref|YP_073940.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
 gi|51854938|dbj|BAD39096.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
          Length = 237

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            VT  C+ C    C  VCP    Y+  +    I  + CI C  C   CP +A   D
Sbjct: 53  FVTTQCLHCDDPPCAAVCPTGATYKTADGPVKIDDENCIGCQYCMTACPYEARTYD 108


>gi|240102484|ref|YP_002958793.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
 gi|239910038|gb|ACS32929.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
          Length = 647

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V+ E C  CK       CP   +   +    I P  C  CG C   CP DA +P  E
Sbjct: 588 HVIEEKCTGCKICINAYGCPAIYWDAEKKKARIDPTICWGCGGCAQVCPFDAFEPMKE 645


>gi|225016098|ref|ZP_03705331.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum
           DSM 5476]
 gi|224951095|gb|EEG32304.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum
           DSM 5476]
          Length = 490

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    C++ CP       +    I   +C +CG C   CP +AI     P
Sbjct: 103 VTQNCRGCLAKKCIKACPFGAISTSDGHAVIDKKKCRECGKCVAACPYNAIVDIERP 159



 Score = 41.5 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 22/102 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-----------------YEGENFLAIHPDECIDCG 44
             +  + C  C    CV  CP +                    +  +   I P++CI+CG
Sbjct: 131 AVIDKKKCREC--GKCVAACPYNAIVDIERPCKNSCAVGAISMDENDVATIDPNKCINCG 188

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINSE---YATQWPNITTK 83
            C   CP  AI   +     + +  N E   YA   P I  +
Sbjct: 189 SCVTGCPFGAISDLSMMTDVIKVLNNKERKIYAMVAPAIEGQ 230


>gi|21226158|ref|NP_632080.1| heterodisulfate reductase subunit A [Methanosarcina mazei Go1]
 gi|41017211|sp|Q8Q0T0|HDRA_METMA RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|20904385|gb|AAM29752.1| Heterodisulfate reductase, subunit A [Methanosarcina mazei Go1]
          Length = 793

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + CI C+   CVEVC        +    +    C  CG C   CPV AI+     
Sbjct: 573 AHVDPDKCIGCR--TCVEVCKFGKISIVDKKAVVDEVSCYGCGDCSAACPVGAIQMRNFE 630

Query: 62  GLELWLKINS 71
             ++  ++ +
Sbjct: 631 NEQILAQVRA 640



 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 19/82 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           +V+ + C  C    C EVCPV+                          + I PD C+ CG
Sbjct: 237 FVLEDKCKGCVD-LCSEVCPVEIENPMNYGIGKSRAIYMPIPQSVPQVVLIDPDHCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C+  CP +A+  + +P    +
Sbjct: 296 LCQLACPAEAVDYEQKPEEIEF 317


>gi|269148509|gb|ACZ28647.1| nitrate reductase beta subunit [uncultured organism]
          Length = 646

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D C    +C   CP   I  + E
Sbjct: 182 CNHCLNPACVASCPSGAMYKREEDGIVLIDQDRCRGWRMCVSACPYKKIYYNWE 235


>gi|288932414|ref|YP_003436474.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894662|gb|ADC66199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 320

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C+   CV+VCP    ++  +  + I  + CI C  C   CP  A + +     
Sbjct: 172 IPIQCQQCEKPPCVKVCPTRATWKEPDGIIVIDYNWCIGCRYCMAACPYWARRFNWSWPY 231

Query: 64  ELWLKIN 70
               +IN
Sbjct: 232 IPKEEIN 238


>gi|85710648|ref|ZP_01041712.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1]
 gi|85687826|gb|EAQ27831.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1]
          Length = 808

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  +C  C+H  C+  CP +    G +    I+ + CI CG C+  CP   I+ D  P  
Sbjct: 669 VPTSCRHCEHPHCMADCPPNAIQRGPDGEVSINAETCIGCGNCKSNCPYGVIRMDPVPPK 728

Query: 64  EL 65
           + 
Sbjct: 729 KP 730


>gi|238917328|ref|YP_002930845.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750]
 gi|238872688|gb|ACR72398.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750]
          Length = 489

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+VT+NC  C    C + C         +   I PD+C +CG+C   CP +AI
Sbjct: 97  YIVTDNCRKCMMKACQQACKFGAVSMTRDRAYIDPDKCKECGMCAKACPYNAI 149



 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+  + C  C                  C ++CP +     EN +  I  ++CI CG C
Sbjct: 127 AYIDPDKCKECGMCAKACPYNAIADLIRPCKKICPANAITMDENGICEIDENKCIQCGQC 186

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 187 IHACPFGAI 195


>gi|257790196|ref|YP_003180802.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474093|gb|ACV54413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 209

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V+  C  C    C+EVCP     + E  L  +    CI CG C   CP  A K D
Sbjct: 60  AFYVSSACNHCASPACMEVCPTGAMGKNELGLVSVDEHRCIGCGYCALSCPYHAPKVD 117


>gi|255279826|ref|ZP_05344381.1| Fe-hydrogenase large subunit family protein [Bryantella
           formatexigens DSM 14469]
 gi|255269599|gb|EET62804.1| Fe-hydrogenase large subunit family protein [Bryantella
           formatexigens DSM 14469]
          Length = 507

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VT+ C  C    CVEVCP              I  D+CI CG C   C   AI     P
Sbjct: 116 FVTDGCRGCLAHPCVEVCPKGAVTLERTNGRSVIDQDKCIKCGRCADVCSYHAIIVQERP 175



 Score = 40.4 bits (93), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEP 48
           +  + CI C                  C   C +D  +        I  ++C+ CG+C  
Sbjct: 149 IDQDKCIKCGRCADVCSYHAIIVQERPCAAACGMDAIHTDANGKADIDYEKCVSCGMCLV 208

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 209 NCPFGAI 215


>gi|188585512|ref|YP_001917057.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350199|gb|ACB84469.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 507

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+E CP D          I+ ++CI+CG C+  CP +AI
Sbjct: 110 FTVTEACRGCVAHYCMESCPKDAISFINRQAYINQEKCIECGKCKNMCPFNAI 162



 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE-GENFLAIHPDECIDCGVC 46
            Y+  E CI C                  C   C VD     G+  ++I  D+C+ CG C
Sbjct: 140 AYINQEKCIECGKCKNMCPFNAISDVMRPCRSACTVDAVKVDGDRRISIDQDKCVSCGAC 199

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 200 IEACPFGAI 208


>gi|309388392|gb|ADO76272.1| Electron transfer flavoprotein alpha subunit [Halanaerobium
          praevalens DSM 2228]
 gi|309389792|gb|ADO77672.1| Electron transfer flavoprotein alpha subunit [Halanaerobium
          praevalens DSM 2228]
          Length = 418

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + C+ C    CV  CP D      +   +  ++C  CG+C  +C  DA++ D E   
Sbjct: 4  IFEDKCVGC--GVCVTSCPFDALKMENDIAVVDTEKCTMCGICVKKCNFDAMEIDKEETG 61

Query: 64 EL 65
          E 
Sbjct: 62 EK 63


>gi|295111792|emb|CBL28542.1| Uncharacterized Fe-S center protein [Synergistetes bacterium SGP1]
          Length = 370

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  E CI C    CV +C  D  +        I  D C+ CG C   CPVDA+     
Sbjct: 191 PHVEQEKCICC--GRCVRICAHDAPHVTPGRGATIDHDRCVGCGRCIGACPVDAV---AP 245

Query: 61  PGLELWLKINSEYATQWPNITT 82
              E +   N + A     +  
Sbjct: 246 DYDEAFDITNCKMAEYTKAVIQ 267


>gi|212634958|ref|YP_002311483.1| Fe-S-cluster-containing hydrogenase components 1 [Shewanella
           piezotolerans WP3]
 gi|212556442|gb|ACJ28896.1| Fe-S-cluster-containing hydrogenase components 1 [Shewanella
           piezotolerans WP3]
          Length = 231

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  V   C  C +  CV+VCP +  Y+ E    + I  DECI C +C   CP  A + D 
Sbjct: 81  TLAVPNQCNQCDNPPCVDVCPAEATYKREEDGIVVIDHDECIHCQLCVDACPYGARRKDE 140


>gi|332702612|ref|ZP_08422700.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552761|gb|EGJ49805.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 267

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLEL 65
           C  C++  CV VCP    ++  + +  +    CI C  C   CP  A             
Sbjct: 128 CNHCEYPPCVRVCPTKATFQRADGIVLMDFHRCIGCRYCMAGCPYGARSFNFSDPRAYLT 187

Query: 66  WLKINSEYATQWPNITTK 83
             +IN E+ T+   +  K
Sbjct: 188 EEEINMEFPTRVQGVVEK 205


>gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 600

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           TYV+T E+CI C    C +VCPVD        +  I  D CI CG CEP CPVDAI
Sbjct: 544 TYVITTEDCIGC--GKCAKVCPVDAISGEIKGIFEIDEDICIACGACEPVCPVDAI 597



 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           CP     +  +   I  ++CI CG C   CPVDAI  + +   E+   I
Sbjct: 533 CPAGACQDLLSTYVITTEDCIGCGKCAKVCPVDAISGEIKGIFEIDEDI 581


>gi|158520470|ref|YP_001528340.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509296|gb|ABW66263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 277

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV  CP    ++ E+ +  +    CI C  C   CP  +   +     E   
Sbjct: 140 CNHCENPPCVRACPTKATFQREDGIVMMDFHRCIGCRFCMAACPYGSRSFNFRDPREGLK 199

Query: 68  KINSEYATQWPNITTK 83
           + N  + T+   +  K
Sbjct: 200 ETNIAFPTRMKGVVEK 215


>gi|317133838|ref|YP_004089749.1| hydrogenase large subunit domain protein [Ruminococcus albus 7]
 gi|315450300|gb|ADU23863.1| hydrogenase large subunit domain protein [Ruminococcus albus 7]
          Length = 478

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C +VCP        N +  I   +CI+CG C   CP  AI     P
Sbjct: 94  YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAHIDKSKCIECGRCSKVCPYSAITNRVRP 153



 Score = 41.5 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-----------------ENFLAIHPDECIDCG 44
            ++    CI C    C +VCP                        ++  AI   +CI CG
Sbjct: 125 AHIDKSKCIEC--GRCSKVCPYSAITNRVRPCQNACKIKAISINEDSVAAIDNKKCISCG 182

Query: 45  VCEPECPVDAI 55
            C  +CP  AI
Sbjct: 183 ACVYQCPFGAI 193


>gi|254361807|ref|ZP_04977942.1| tetrathionate reductase subunit B [Mannheimia haemolytica PHL213]
 gi|261491590|ref|ZP_05988173.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261494950|ref|ZP_05991419.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|153093342|gb|EDN74338.1| tetrathionate reductase subunit B [Mannheimia haemolytica PHL213]
 gi|261309359|gb|EEY10593.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261312716|gb|EEY13836.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 242

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV VCPV   ++ ++  + I+ ++CI CG C   CP DA   + E
Sbjct: 98  CNHCDQPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEE 150


>gi|239625212|ref|ZP_04668243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519442|gb|EEQ59308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 507

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VVT+ C  C    CVEVCP D            I  D CI CG C   C  +AI     P
Sbjct: 116 VVTDGCQGCLAHPCVEVCPKDAVSIDRSNGRSHIDQDRCIRCGRCADVCSYNAIIIQERP 175



 Score = 40.4 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
           +++  + CI C                  C   C +DC +  EN    I  D+C+ CG+C
Sbjct: 147 SHIDQDRCIRCGRCADVCSYNAIIIQERPCAAACGMDCIHSDENGKADIDYDKCVSCGMC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|332795924|ref|YP_004457424.1| DSMO reductase subunit B [Acidianus hospitalis W1]
 gi|332693659|gb|AEE93126.1| DSMO reductase subunit B [Acidianus hospitalis W1]
          Length = 269

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  +C  C+   CV+VCP    Y+   +  + I  + C     C   CP   I  D   G
Sbjct: 75  IPISCFHCEDAPCVKVCPTGAIYKRRVDGVVVIDYNVCQGFKYCITACPYGNIDFDPIEG 134

Query: 63  LEL 65
           +  
Sbjct: 135 VSK 137


>gi|257065141|ref|YP_003144813.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256792794|gb|ACV23464.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 209

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY V+  C  C    CVE CPV     +E    +   P+ CI CG C   CP  A + DT
Sbjct: 60  TYYVSSACNHCATPACVEACPVGTMTKHEDTGLVYNDPETCIGCGSCVNACPYGAPQVDT 119

Query: 60  E 60
           E
Sbjct: 120 E 120


>gi|206891168|ref|YP_002247862.1| tetrathionate reductase, subunit B [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743106|gb|ACI22163.1| tetrathionate reductase, subunit B [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 256

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCPV   ++  + + +     CI C  C   CP  A   +  P  +   
Sbjct: 119 CNHCDNAPCVRVCPVKATFKRADGITMQDMHRCIGCKFCMAGCPYGARNYNFLPPRDYIK 178

Query: 68  KINSEYATQWPNITTK 83
           ++N EY T+   +  K
Sbjct: 179 ELNPEYPTRTIGVVEK 194


>gi|328951758|ref|YP_004369092.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452082|gb|AEB07911.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 370

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C  C   DCV  C  +      +   I P +C+ C  C   CP   I+      +
Sbjct: 193 VNEKKCTGC--GDCVAHCAQEAIRLEADKAVIDPAKCVGCAECILVCPYGNIEIQWNESI 250

Query: 64  ELWLKINSEY 73
            ++LK   EY
Sbjct: 251 PVFLKKMVEY 260


>gi|222836452|gb|EEE74859.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   Y+ ++  + I    CI C  C   CP DA   ++E
Sbjct: 97  CNHCDNPPCVPVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDARFINSE 149


>gi|319795038|ref|YP_004156678.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315597501|gb|ADU38567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 276

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D E  +  
Sbjct: 136 SCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCAWACPYGARELDEERQVMT 195

Query: 66  WLKI--NSEYATQWPNITTK----KESLPSAAKMDGVKQ 98
              +  +  Y    P    K    K     A     VK 
Sbjct: 196 KCTLCVDRIYDELLPKEDRKPACVKACPTGARLFGDVKD 234


>gi|251780311|ref|ZP_04823231.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084626|gb|EES50516.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 494

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C  VC        +    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 104 FEVTDACRNCIAHKCQSVCNFGAITYVDGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162



 Score = 41.5 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 17/116 (14%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
            Y+  + C  C                  C   CP        +    I  ++C++CG C
Sbjct: 134 AYIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGAC 193

Query: 47  EPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKY 100
              CP  A++  +     +    N+   YA   P IT +        ++    +K 
Sbjct: 194 MAACPFGALEDRSLLVKIVKELTNNSNIYAVVAPAITGQLGPKTGYGQVKNAIKKL 249


>gi|295100394|emb|CBK97939.1| Iron only hydrogenase large subunit, C-terminal domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 517

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++ C  C    C+EVCP            I  ++CI CG C   CP +AI
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQEKCIKCGRCVGVCPYNAI 171



 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  E CI C    CV VCP +   + E                     I   +C+ CG C
Sbjct: 151 IDQEKCIKC--GRCVGVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQC 208

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 209 LVNCPFGAI 217


>gi|18313624|ref|NP_560291.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|18161171|gb|AAL64473.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
          Length = 232

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 6/103 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            ++  C  C+ T C  VCP    Y+    +  I  D CI CG C   CP  +        
Sbjct: 64  FISSLCYHCEDTPCQRVCPTGATYKTPEGVVLIDKDLCIGCGYCIIACPYGS--RYRPEP 121

Query: 63  LELWLKINSEYATQWPNITTKKESL---PSAAKMDGVKQKYEK 102
            E     N     +   +T     L   P   K        +K
Sbjct: 122 HEWHEAENKPLVKEVEEVTQYGGVLFKSPVPNKWAFRIDSVDK 164


>gi|254439365|ref|ZP_05052859.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
 gi|198254811|gb|EDY79125.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
          Length = 242

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D E  +  
Sbjct: 59  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMDAEAKVMK 118


>gi|188587767|ref|YP_001919801.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498048|gb|ACD51184.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 494

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C  VC        +    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 104 FEVTDACRNCIAHKCQSVCNFGAITYVDGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162



 Score = 41.5 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 17/116 (14%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
            Y+  + C  C                  C   CP        +    I  ++C++CG C
Sbjct: 134 AYIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGAC 193

Query: 47  EPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKY 100
              CP  A++  +     +    N+   YA   P IT +        ++    +K 
Sbjct: 194 MAACPFGALEDRSLLVKIVKELTNNSNIYAVVAPAITGQLGPKTGYGQVKNAIKKL 249


>gi|327311101|ref|YP_004337998.1| Fe-S-cluster-containing hydrogenase components 1 [Thermoproteus
           uzoniensis 768-20]
 gi|326947580|gb|AEA12686.1| Fe-S-cluster-containing hydrogenase components 1 [Thermoproteus
           uzoniensis 768-20]
          Length = 188

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C++  CV VCP    Y+ ++ L  I+ D CI C  C   CP DA   + 
Sbjct: 63  CQHCENPPCVTVCPTGASYKDKDGLVKINYDLCIGCRYCMVACPYDARWFNE 114


>gi|260913909|ref|ZP_05920383.1| tetrathionate reductase subunit B [Pasteurella dagmatis ATCC 43325]
 gi|260631996|gb|EEX50173.1| tetrathionate reductase subunit B [Pasteurella dagmatis ATCC 43325]
          Length = 245

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   Y+ ++  + I+ + CI C  C   CP DA   + E
Sbjct: 99  CNHCDNPPCVPVCPVQATYQRKDGIVVINNERCIGCAYCVQACPYDARFINEE 151


>gi|307721543|ref|YP_003892683.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979636|gb|ADN09671.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 212

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C++  C  +CPV   +  EN +  I  + CI C  C   CP  AI  D E
Sbjct: 56  RCNHCENAPCERICPVSALHYIENGIVNIDKERCIGCAGCVMACPYGAIYIDPE 109



 Score = 33.8 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 19/67 (28%), Gaps = 10/67 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDA-I 55
           +  E CI C    CV  CP    Y                         C   CPV+A I
Sbjct: 84  IDKERCIGC--AGCVMACPYGAIYIDPETQTADKCTYCAHRIASSMMPACVVACPVEANI 141

Query: 56  KPDTEPG 62
             D +  
Sbjct: 142 FGDLDDP 148


>gi|257065409|ref|YP_003145081.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793062|gb|ACV23732.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 211

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C++ +CV+VCP +  +  E+  + I   +CI C  C   CP      + E 
Sbjct: 59  YFVTVGCQHCENPECVKVCPTEASHIAEDGTIQIDKAKCIGCQFCVMACPYGVRYLNEEE 118

Query: 62  G 62
            
Sbjct: 119 R 119


>gi|34557777|ref|NP_907592.1| putative oxidoreductase, Fe-S subunit [Wolinella succinogenes DSM
           1740]
 gi|34483494|emb|CAE10492.1| PUTATIVE OXIDOREDUCTASE, FE-S SUBUNIT [Wolinella succinogenes]
          Length = 217

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y  +  C  C    C++ CP    ++G   +  ++   CI C  C   CP  A + D+
Sbjct: 64  AYYTSIACNHCDDPACIKACPTGAMHKGLYGIVEVNQSRCIGCKACAMACPYGAPQFDS 122


>gi|22124776|ref|NP_668199.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis KIM
           10]
 gi|45440219|ref|NP_991758.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808811|ref|YP_652727.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Antiqua]
 gi|108810934|ref|YP_646701.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|145600291|ref|YP_001164367.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides F]
 gi|153947293|ref|YP_001402217.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997629|ref|ZP_02022729.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CA88-4125]
 gi|162418201|ref|YP_001605488.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Angola]
 gi|165925705|ref|ZP_02221537.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936633|ref|ZP_02225200.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010127|ref|ZP_02231025.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213010|ref|ZP_02239045.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399468|ref|ZP_02304992.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421626|ref|ZP_02313379.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423573|ref|ZP_02315326.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467625|ref|ZP_02332329.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           FV-1]
 gi|170025608|ref|YP_001722113.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           YPIII]
 gi|186894170|ref|YP_001871282.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930345|ref|YP_002348220.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CO92]
 gi|229838947|ref|ZP_04459106.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229896427|ref|ZP_04511595.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides A]
 gi|229899514|ref|ZP_04514655.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901149|ref|ZP_04516272.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|270489331|ref|ZP_06206405.1| dimethylsulfoxide reductase, chain B [Yersinia pestis KIM D27]
 gi|294505035|ref|YP_003569097.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Z176003]
 gi|5002127|gb|AAD37318.1|AF135170_9 dimethyl sulfoxide reductase subunit B [Yersinia pestis]
 gi|21957598|gb|AAM84450.1|AE013689_5 anaerobic dimethyl sulfoxide reductase subunit B [Yersinia pestis
           KIM 10]
 gi|45435075|gb|AAS60635.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774582|gb|ABG17101.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|108780724|gb|ABG14782.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Antiqua]
 gi|115348956|emb|CAL21915.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CO92]
 gi|145211987|gb|ABP41394.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides F]
 gi|149289266|gb|EDM39346.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CA88-4125]
 gi|152958788|gb|ABS46249.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351016|gb|ABX84964.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           Angola]
 gi|165915282|gb|EDR33892.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922317|gb|EDR39494.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991034|gb|EDR43335.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205797|gb|EDR50277.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960545|gb|EDR56566.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051972|gb|EDR63380.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057743|gb|EDR67489.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752142|gb|ACA69660.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           YPIII]
 gi|186697196|gb|ACC87825.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681874|gb|EEO77967.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|229687006|gb|EEO79081.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695313|gb|EEO85360.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700501|gb|EEO88532.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides A]
 gi|262363098|gb|ACY59819.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           D106004]
 gi|262367026|gb|ACY63583.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           D182038]
 gi|270337835|gb|EFA48612.1| dimethylsulfoxide reductase, chain B [Yersinia pestis KIM D27]
 gi|294355494|gb|ADE65835.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Z176003]
 gi|320016518|gb|ADW00090.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 205

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++  + ++ D CI C  C   CP  A + D E
Sbjct: 60  AYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDAE 119


>gi|254452377|ref|ZP_05065814.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 238]
 gi|198266783|gb|EDY91053.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 238]
          Length = 268

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D E  +  
Sbjct: 86  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMDAEAKVMK 145


>gi|134299648|ref|YP_001113144.1| hydrogenase large subunit [Desulfotomaculum reducens MI-1]
 gi|134052348|gb|ABO50319.1| hydrogenase large subunit domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+ C  C    C   CP       +N   I  + C++CG C   CP +AI   T P
Sbjct: 93  YVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDQNSCVECGKCANACPYNAIIEVTRP 151



 Score = 40.7 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 19/75 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++   +C+ C    C   CP +   E                       I  + C  CG
Sbjct: 123 AFIDQNSCVEC--GKCANACPYNAIIEVTRPCERACALKAIKVDDSRKAVIDHELCASCG 180

Query: 45  VCEPECPVDAIKPDT 59
           +C   CP  AI   +
Sbjct: 181 LCVTVCPFGAITDHS 195


>gi|307718915|ref|YP_003874447.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM
           6192]
 gi|306532640|gb|ADN02174.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM
           6192]
          Length = 527

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VTE C  C    C   CP           +I  + CI+CG+CE  CP  AI
Sbjct: 158 FMVTEVCQGCVARPCKTGCPRGAISIVRGRASIDYERCINCGLCERVCPFHAI 210



 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C EVCPV    +GE+ +A I    CI CG C   CP
Sbjct: 193 ERCINCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKACP 252

Query: 52  VDAIKPDTE 60
             A +  ++
Sbjct: 253 FGAPQEQSD 261


>gi|295103488|emb|CBL01032.1| Iron only hydrogenase large subunit, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 517

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQDKCIKCGRCVTVCPYNAI 171



 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    CV VCP +   + E                     I   +C+ CG C
Sbjct: 151 IDQDKCIKC--GRCVTVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQC 208

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 209 LVNCPFGAI 217


>gi|220935363|ref|YP_002514262.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996673|gb|ACL73275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 244

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+H  CV+VCP    +   + +  ++   CI C  C   CP  A     E   + 
Sbjct: 106 CQHCEHPPCVDVCPTGASFRRADGIVLVNKHTCIGCRYCMMACPYKARSFVHEHLTDQ 163


>gi|168702048|ref|ZP_02734325.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 917

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
           ++V  +C  C+   C+E CPVD  +     L  +  + CI CG+CE  CP  AI  
Sbjct: 796 FLVATSCRSCQKPYCMEGCPVDAIHRRGAHLEVVIENHCIGCGLCERNCPYGAIHM 851



 Score = 33.8 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF 32
           V+  +CI C    C   CP    +     
Sbjct: 829 VIENHCIGC--GLCERNCPYGAIHMTARG 855


>gi|86157848|ref|YP_464633.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774359|gb|ABC81196.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 243

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV+ CP    + E +  + I  D CI C  C   CP  A   +         
Sbjct: 98  CQQCRNPPCVKACPTQATWKEQDGIVVIDYDWCIGCRCCMSACPYGARHFNWATPNLPAE 157

Query: 68  KIN 70
           ++N
Sbjct: 158 ELN 160


>gi|171463322|ref|YP_001797435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192860|gb|ACB43821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 252

 Score = 57.7 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V+  C+ C    C+ VCPVDCFY  +  +     D CI CG C   CP  A
Sbjct: 86  VSVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSFACPFGA 136


>gi|283785102|ref|YP_003364967.1| oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
 gi|282948556|emb|CBG88146.1| putative oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
          Length = 222

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++C  C+   C+EVCP    +  E  +  +    CI CG C   CP        +  +  
Sbjct: 90  QSCQHCEDAPCIEVCPTGASWRDERGIVRVDGSRCIGCGYCIGACPYQVRYLHPQSKVAD 149

Query: 66  WLKINSE--YATQWPNI 80
                +E   A  +P I
Sbjct: 150 KCDFCAESRLAKGFPPI 166


>gi|261368062|ref|ZP_05980945.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM
           15176]
 gi|282570052|gb|EFB75587.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM
           15176]
          Length = 368

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV  E C+ C    CV++C  D  +  +   +I  ++C+ CG C   CP DA++   + 
Sbjct: 190 PYVKQELCVGC--GRCVKICAHDAPHIVDRKSSIDQNKCVGCGRCIGVCPTDAVRAAEDE 247

Query: 62  GLELWLKINSEYATQ 76
             ++   +N + A  
Sbjct: 248 SNDI---LNCKIAEY 259


>gi|319955037|ref|YP_004166304.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga algicola DSM 14237]
 gi|319423697|gb|ADV50806.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga algicola DSM 14237]
          Length = 378

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CVEVCPV   ++ E+  + I  D C+ C  C   CP D  + +         
Sbjct: 234 CFHCDNPPCVEVCPVQATWKEEDGLVVIDYDWCVGCRYCMAACPYDGRRFNWSKPEVPEK 293

Query: 68  KINS 71
           ++N 
Sbjct: 294 EVNK 297


>gi|310779216|ref|YP_003967549.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748539|gb|ADO83201.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 480

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y  T+ C  C   +C  VCP D     +    I P++CI CG+C   C   AI
Sbjct: 119 YYATDLCRNCIAHNCTNVCPRDAIVFDDGRAKIIPEKCIGCGLCAKSCDYYAI 171



 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEP 48
           ++ E CI C                  C   C ++   + EN  A I+ D+C+ CG C  
Sbjct: 151 IIPEKCIGCGLCAKSCDYYAIVKLERPCERACTLNAITKDENGAADINKDKCVACGACHV 210

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 211 ACPFGAI 217


>gi|301057563|ref|ZP_07198643.1| electron transfer flavoprotein FAD-binding domain protein [delta
          proteobacterium NaphS2]
 gi|300448287|gb|EFK11972.1| electron transfer flavoprotein FAD-binding domain protein [delta
          proteobacterium NaphS2]
          Length = 405

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 1  MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  VV E  C  CK   CVE CP            I+   C +CG C   C   AI  +
Sbjct: 1  MPVVVNEEKCKGCKL--CVEACPYAAISMRNKKAVINDG-CTNCGSCIDSCEFGAIGFE 56


>gi|218885175|ref|YP_002434496.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756129|gb|ACL07028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 259

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV VCP    ++  + + +     CI C  C   CP  A   +         
Sbjct: 122 CNHCENPPCVRVCPTKATFKRADGIVVMDYHRCIGCRFCMAGCPYGARSFNFGDPRPYLK 181

Query: 68  KIN 70
            +N
Sbjct: 182 DVN 184


>gi|297570241|ref|YP_003691585.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926156|gb|ADH86966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 271

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT------EP 61
           C  C +  CV  CP    ++  + +  +    CI C  C   CP  A   +       + 
Sbjct: 125 CNHCDNPPCVRACPTKATFKKADGIVGMDYHRCIGCRFCMAACPYGARSFNWRDPRGMDE 184

Query: 62  GLELWL-KINSEYATQWPNITTK 83
               ++ ++N +Y  +   +  K
Sbjct: 185 HGRSFIRELNPDYPARTMGVVEK 207


>gi|253702471|ref|YP_003023660.1| Fis family transcriptional regulator [Geobacter sp. M21]
 gi|251777321|gb|ACT19902.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. M21]
          Length = 759

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          +T++C  C    CV  CPV      +++  I P+ CI CG C   CP  A        + 
Sbjct: 7  ITDHCRKCY--SCVRSCPVKAIKVEKSYTEIIPERCIGCGNCMSHCPQHAKVIADNVAVT 64

Query: 65 LWLKINSEYATQWPNIT 81
               N+  ++  P + 
Sbjct: 65 -----NAHLSSGEPVVA 76



 Score = 35.7 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID 42
          ++ E CI C   +C+  CP       +N    +      
Sbjct: 35 IIPERCIGC--GNCMSHCPQHAKVIADNVAVTNAHLSSG 71


>gi|157371163|ref|YP_001479152.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Serratia proteamaculans 568]
 gi|157322927|gb|ABV42024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 184

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           M + ++ +C  C    C+EVCP D + +  + + +   D+CI C +C   CP +A   D
Sbjct: 50  MAF-ISMSCNHCDDPQCMEVCPADTYSKRPDGIVVQDHDKCIGCRMCIMACPYNAPVFD 107


>gi|257439152|ref|ZP_05614907.1| Fe-hydrogenase large subunit family protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257198403|gb|EEU96687.1| Fe-hydrogenase large subunit family protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 528

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++ C  C    C+EVCP            I  ++CI CG C   CP +AI
Sbjct: 132 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQEKCIKCGRCATVCPYNAI 182



 Score = 41.5 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  E CI C    C  VCP +   + E                     I   +C+ CG C
Sbjct: 162 IDQEKCIKC--GRCATVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQC 219

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 220 LVNCPFGAI 228


>gi|315187127|gb|EFU20884.1| hydrogenase large subunit domain protein [Spirochaeta thermophila
           DSM 6578]
          Length = 527

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VTE C  C    C   CP           +I  + CI+CG+CE  CP  AI
Sbjct: 158 FMVTEVCQGCVARPCKTGCPKGAISIVRGRASIDYERCINCGLCERVCPFHAI 210



 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C EVCPV    +GE+ +A I    CI CG C   CP
Sbjct: 193 ERCINCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKACP 252

Query: 52  VDAIKPDTE 60
             A +  ++
Sbjct: 253 FGAPQEQSD 261


>gi|225850216|ref|YP_002730450.1| sulfur reductase FeS subunit [Persephonella marina EX-H1]
 gi|225646174|gb|ACO04360.1| sulfur reductase FeS subunit [Persephonella marina EX-H1]
          Length = 211

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  C++  C  +CPV   +   N +  +  + CI C  C   CP +AI  D
Sbjct: 51  HFVPLRCNHCENAPCERICPVGALHYLPNGIVNVDHNRCIGCASCMMACPYNAIYLD 107


>gi|78043445|ref|YP_360076.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995560|gb|ABB14459.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 368

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C+   C   CP            I+ + CI CG C   C   AIK + +   
Sbjct: 190 VNAEICTGCRK--CARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIKINWKDEN 247

Query: 64  E 64
           +
Sbjct: 248 D 248


>gi|187932652|ref|YP_001884615.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund
           17B]
 gi|187720805|gb|ACD22026.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund
           17B]
          Length = 494

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C  VC        E    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 104 FEVTDACRNCIAHKCQSVCNFGAITYVEGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162



 Score = 41.5 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 17/116 (14%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
            Y+  + C  C                  C   CP        +    I  ++C++CG C
Sbjct: 134 AYIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGAC 193

Query: 47  EPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKY 100
              CP  A++  +     +    N+   YA   P IT +        ++    +K 
Sbjct: 194 MAACPFGALEDRSLLVKIVKELTNNSNIYAVVAPAITGQLGPKTGYGQVKNAIKKL 249


>gi|291279180|ref|YP_003496015.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Deferribacter desulfuricans SSM1]
 gi|290753882|dbj|BAI80259.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Deferribacter desulfuricans SSM1]
          Length = 578

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V TE C  CK   C  + CP   + + E    I    C  CG+C   C  DAI    E
Sbjct: 521 FVDTEKCTGCK--ACTRIGCPAILWDDNEKQAFIDETLCTGCGLCPRVCRFDAIHQRGE 577


>gi|239628141|ref|ZP_04671172.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518287|gb|EEQ58153.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 483

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y+VT+NC  C    C   C       G     I P +C +CG C   CP +AI     P
Sbjct: 93  SYIVTDNCRKCMGKACQNSCNFGAISMGRERAYIDPAKCKECGKCSQACPYNAIAHLERP 152



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+    C  C                  C ++CPVD     E  +  I   +CI CG C
Sbjct: 124 AYIDPAKCKECGKCSQACPYNAIAHLERPCKKICPVDAITYDEYGICVIDEKKCIQCGAC 183

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 184 IHSCPFGAI 192


>gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 604

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + +T++CI C    C + CPV      +     I  +EC+ CG+C   C  DAI   + 
Sbjct: 530 AFSITDDCIGC--GVCKKSCPVGAISGDKKEIHIIDQEECVKCGMCVSACKFDAIHVVSG 587

Query: 61  PGLE 64
              E
Sbjct: 588 EEKE 591


>gi|158634532|gb|ABW76118.1| Fe-hydrogenase 3 [Trimastix pyriformis]
          Length = 445

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI
Sbjct: 115 AYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPYHAI 168



 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    +G +    I  ++CI CG C+ 
Sbjct: 148 IDPDLCVRCGACQKVCPYHAIVKLAVPCEEACPVGAIAKGPSGHAEIDWEKCIHCGQCQL 207

Query: 49  ECPVDAI 55
            CP  ++
Sbjct: 208 HCPFSSV 214


>gi|219667285|ref|YP_002457720.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537545|gb|ACL19284.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C  C +  CV  CP    Y+ +  L    P++CI C  C   CP + I  +++   
Sbjct: 54  VPTLCNHCDNAACVRACPTKAMYKDDKGLTLHDPNKCIGCKSCMQACPYEVINYNSKEPH 113

Query: 64  ELWLK 68
             W  
Sbjct: 114 GYWRD 118


>gi|238923605|ref|YP_002937121.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale
           ATCC 33656]
 gi|238875280|gb|ACR74987.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale
           ATCC 33656]
          Length = 530

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C+EVCP D            I  ++CI CG C   C  +AI     P
Sbjct: 140 VTDGCQGCLAHPCMEVCPKDAVSLDRTTGKSVIDQEKCIKCGRCASVCSYNAIIVQERP 198



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEP 48
           +  E CI C                  C + C +D     EN    I  D+C+ CG C  
Sbjct: 172 IDQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLV 231

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 232 NCPFGAI 238


>gi|163752014|ref|ZP_02159224.1| TtrB [Shewanella benthica KT99]
 gi|161328119|gb|EDP99287.1| TtrB [Shewanella benthica KT99]
          Length = 231

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  V   C  C +  CV VCPV   Y+   +  + I  DECI C +C   CP  A + D 
Sbjct: 81  TLAVPNQCNQCDNPACVYVCPVGATYKRKEDGIVVIDHDECIYCQLCVDACPYGARRKDE 140


>gi|20091692|ref|NP_617767.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Methanosarcina acetivorans
           C2A]
 gi|41017214|sp|Q8TM02|HDRA_METAC RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|19916866|gb|AAM06247.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Methanosarcina acetivorans
           C2A]
          Length = 793

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + CI C+   CVEVC             +    C  CG C   CPV AI+     
Sbjct: 573 AHVDPDKCIGCR--TCVEVCKFGKISIENKKAVVDEVSCYGCGDCSAACPVGAIQMRNFE 630

Query: 62  GLE 64
             +
Sbjct: 631 NEQ 633



 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 19/82 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           +V+ + C  C    C  VCPV+                          + I PD C+ CG
Sbjct: 237 FVLEDKCKGCVD-LCSGVCPVEIENPMNYGIGKTRAIYMPIPQSVPQVVLIDPDHCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C+  CP +A+  + +P    +
Sbjct: 296 LCQLACPAEAVDYEQKPEEIEF 317


>gi|160894561|ref|ZP_02075337.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50]
 gi|156863872|gb|EDO57303.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50]
          Length = 483

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YVVT+NC  C    C   C       G +   I P +C +CG C   CP +AI
Sbjct: 94  YVVTDNCQKCMGKACQAACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAI 146



 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF---LAIHPDECIDCG 44
           +Y+    C  C                  C++ CPVD     +N      I+ D+CI CG
Sbjct: 124 SYIDPSKCKECGQCAKACPYNAIADLVRPCMKSCPVDAISVADNGTGIAVINQDKCIQCG 183

Query: 45  VCEPECPVDAI 55
            C  +CP  AI
Sbjct: 184 SCVHKCPFGAI 194


>gi|320184796|gb|EFW59587.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           CDC 796-83]
          Length = 222

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|291563047|emb|CBL41863.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 513

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP D            I PD+CI CG C   C   AI     P
Sbjct: 123 VTDGCQGCLAHPCVEVCPKDAVSLDRTNGRSRIDPDKCIKCGQCANVCAYHAIIIQERP 181



 Score = 40.4 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEP 48
           +  + CI C                  C   C +D  +  EN    I+ D+C+ CG C  
Sbjct: 155 IDPDKCIKCGQCANVCAYHAIIIQERPCAAACGMDAIHSDENGKADINYDKCVSCGQCLV 214

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 215 NCPFGAI 221


>gi|160933096|ref|ZP_02080485.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753]
 gi|156868170|gb|EDO61542.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753]
          Length = 546

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VT NC  C    CV  CP        +   I P +C +CG C   CP +AI
Sbjct: 160 FTVTANCQRCMAKKCVAACPFGAITVTGSGAYIDPAKCKECGRCAAACPYNAI 212



 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            Y+    C  C                  C+  CPVD     EN   +I  + CI CG C
Sbjct: 190 AYIDPAKCKECGRCAAACPYNAISDTMRPCLRSCPVDAITMDENKQASIKYERCIGCGAC 249

Query: 47  EPECPVDAI 55
             +CP  AI
Sbjct: 250 TMDCPFGAI 258


>gi|291614139|ref|YP_003524296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584251|gb|ADE11909.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 238

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    CV+VCP    ++  + +  +    CI C  C   CP  A     EP  + 
Sbjct: 104 CQHCAEPPCVDVCPTAASFKRADGIVLVDRHRCIGCRYCMMACPYKARSFVHEPLTDQ 161


>gi|51595156|ref|YP_069347.1| anaerobic dimethyl sulfoxide reductase, subunit B [Yersinia
           pseudotuberculosis IP 32953]
 gi|51588438|emb|CAH20046.1| anaerobic dimethyl sulfoxide reductase, subunit B [Yersinia
           pseudotuberculosis IP 32953]
          Length = 205

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++  + F+ ++ D CI C  C   CP  A + D E
Sbjct: 60  AYYLSIACNHCSDPACTKVCPSGAMHKRNDGFVVVNEDICIGCRYCHMACPYGAPQYDAE 119


>gi|160939851|ref|ZP_02087198.1| hypothetical protein CLOBOL_04742 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437285|gb|EDP15050.1| hypothetical protein CLOBOL_04742 [Clostridium bolteae ATCC
           BAA-613]
          Length = 357

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V T+ CI C    C   C        E   +I   +C+ CG C   CPVDA+    + 
Sbjct: 179 PFVHTDKCIGC--GACQRNCAHSAITVLERKASIDTSKCVGCGRCIGACPVDAVDSMCDE 236

Query: 62  GLELWLKINSEYATQW 77
             ++   +N + A   
Sbjct: 237 ANDI---LNRKIAEYT 249


>gi|90021997|ref|YP_527824.1| aspartate carbamoyltransferase [Saccharophagus degradans 2-40]
 gi|89951597|gb|ABD81612.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 615

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C+   C++ CP   + +  E    I  PD C  CG C   CP +A + D
Sbjct: 109 ISMACNHCEEPVCLKGCPTRAYTKHPEYGAVIQDPDICFGCGYCTWVCPYNAPQLD 164


>gi|152979186|ref|YP_001344815.1| dimethylsulfoxide reductase chain B [Actinobacillus succinogenes
           130Z]
 gi|150840909|gb|ABR74880.1| Dimethylsulfoxide reductase chain B [Actinobacillus succinogenes
           130Z]
          Length = 205

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    CV+VCP    ++ E    I + + CI C  C   CP DA + D
Sbjct: 60  AYYMSVSCNHCDDPACVKVCPTGAMHKNEEGFVIVNEETCIGCRYCHMACPYDAPQFD 117


>gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 527

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +TE CI C  T C  VCPV C     +    I   +CI CG C   CPV AI
Sbjct: 473 YYITEKCIGC--TKCANVCPVKCIDGSIKKRHVITAQQCIKCGQCYEACPVHAI 524


>gi|152990320|ref|YP_001356042.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
 gi|151422181|dbj|BAF69685.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
          Length = 214

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   C  +CPV   +  EN +  I  + CI C  C   CP  AI  D E
Sbjct: 56  RCNHCEDAPCERICPVSALHYLENGIVNIDKERCIGCAGCMMACPYGAIYMDPE 109


>gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 598

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           + +T+ CI C  T C +VCP +      +    I+ D CI CG C   C  +AI
Sbjct: 544 FTITDKCIGC--TACAKVCPTEAILGRVKEKHYIYQDRCIKCGACYNACRFNAI 595


>gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 594

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +T+ CI C  T C  VCP+D      ++   I  + CI CG C   C   AI
Sbjct: 539 TYSITDKCIGC--TACARVCPIDAITGTVKHRHEIDNEICIKCGACYETCKFGAI 591


>gi|297618020|ref|YP_003703179.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145857|gb|ADI02614.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 373

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF------LAIHPDECIDCGVCEPECPVDAIKPDT 59
            + C  C    C E CP       E          I  ++C  CG C   C   +I    
Sbjct: 192 EDKCTGC--GRCAEWCPTGAISMVERGEGEKPRAVIDYEKCYGCGECVISCLFGSINISW 249

Query: 60  EPGLELWLKINSEYA 74
           +   ++  +  +EYA
Sbjct: 250 KTTPQVIQEKMAEYA 264


>gi|152992104|ref|YP_001357825.1| 4Fe-4S ferredoxin [Sulfurovum sp. NBC37-1]
 gi|151423965|dbj|BAF71468.1| 4Fe-4S ferredoxin [Sulfurovum sp. NBC37-1]
          Length = 251

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   C  +CPV   +  EN +  +    CI C  C   CP  AI  D E
Sbjct: 56  RCNHCESAPCERICPVSALHYLENGIVNVDSSRCIGCAGCMMACPYGAIYMDPE 109


>gi|120599742|ref|YP_964316.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120559835|gb|ABM25762.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 234

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C    CV+VCP    ++ +  L + + DECI C  C   CP   I  +T    
Sbjct: 53  IPTLCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISFNTATPH 112

Query: 64  ELW 66
             W
Sbjct: 113 RRW 115


>gi|121535200|ref|ZP_01667015.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306191|gb|EAX47118.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 356

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+T+NC  C    C++ CP +   E +    I  ++CI CG C   C  DA+K D     
Sbjct: 191 VLTDNCRFC--QKCLKWCPQEAIIEKDGKAYIMTEKCIGCGECLAVCRFDAVKYDWGAES 248

Query: 64  ELWLKINSEYA 74
               +  +E+A
Sbjct: 249 GFMQRSMAEHA 259



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE 30
            Y++TE CI C   +C+ VC  D      
Sbjct: 218 AYIMTEKCIGC--GECLAVCRFDAVKYDW 244


>gi|123441922|ref|YP_001005905.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088883|emb|CAL11690.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 244

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+  +  + I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|83590718|ref|YP_430727.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573632|gb|ABC20184.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 176

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C+   C   CPV    +  N + I+ D CI C  C   CP  +I+          +
Sbjct: 59  RCRHCEDAPCARACPVGAITQKNNVVLINSDRCIGCKTCAIVCPFGSIELVYREKEHKVV 118

Query: 68  KINSEYATQWPN 79
               +     P 
Sbjct: 119 AHKCDLCEGRPG 130


>gi|332162126|ref|YP_004298703.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606176|emb|CBY27674.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666356|gb|ADZ43000.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330864031|emb|CBX74110.1| hypothetical protein YEW_AE00950 [Yersinia enterocolitica W22703]
          Length = 244

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+  +  + I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|296184817|ref|ZP_06853228.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|296050599|gb|EFG90022.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 495

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C  C    C+EVCP +          I+ + C +CG+C   CP  AI
Sbjct: 104 YTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAI 156



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
            Y+  E C  C                  C  VCP              I  +ECI+CG 
Sbjct: 134 AYINQELCKECGMCRKSCPYGAIAEVMRPCKRVCPTGALEINSDNKMAMIEKEECINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       + +N++  YA   P I+ +   
Sbjct: 194 CMAACPFGAISDKSYIKDVTNVLVNNKKVYAVVAPAISGQFGP 236


>gi|260655399|ref|ZP_05860887.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1]
 gi|260629847|gb|EEX48041.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1]
          Length = 387

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E CI C    C   CPV         G N   I   +CI C  C   CPV AI  D 
Sbjct: 211 VAPEECIAC--GRCARNCPVRAISMKNPAGANKAFIDQSKCIGCSECMTHCPVSAISIDW 268

Query: 60  --EPGLELWLKINSEYA 74
             E     + +  +EYA
Sbjct: 269 GSEEDRSAFGERMAEYA 285


>gi|219850506|ref|YP_002464939.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219544765|gb|ACL26503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 318

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            V   C+ C +  C  VCPV   Y  E+ +  +  ++CI C  C   CP  A   D
Sbjct: 149 FVPRPCMQCDNPPCTSVCPVSATYTNEHGVVAVDYEQCIGCRACIAACPYGARTFD 204


>gi|319425621|gb|ADV53695.1| respiratory arsenate reductase, FeS subunit, ArrB [Shewanella
           putrefaciens 200]
          Length = 234

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C    CV+VCP    ++ +  L + + DECI C  C   CP   I  +T    
Sbjct: 53  IPTLCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISFNTATPH 112

Query: 64  ELW 66
             W
Sbjct: 113 RRW 115


>gi|197119565|ref|YP_002139992.1| oxidoreductase iron-sulfur cluster-binding subunit [Geobacter
           bemidjiensis Bem]
 gi|197088925|gb|ACH40196.1| oxidoreductase, iron-sulfur cluster-binding subunit [Geobacter
           bemidjiensis Bem]
          Length = 260

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V + C  C +  CV+VCPV   Y+ E+ +  +    CI CG C   CP       
Sbjct: 126 AFFVPKLCNQCDNPPCVQVCPVGATYQTEDGVVLVDRSWCIGCGYCIMGCPYGVRFFH 183


>gi|303326499|ref|ZP_07356942.1| putative reductase, iron-sulfur binding subunit [Desulfovibrio sp.
           3_1_syn3]
 gi|302864415|gb|EFL87346.1| putative reductase, iron-sulfur binding subunit [Desulfovibrio sp.
           3_1_syn3]
          Length = 263

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCP    Y  E+ +  +    CI C  C   CP  A   +       ++
Sbjct: 124 CNHCTNPPCVRVCPTQATYRMEDGIVAMDYHRCIGCRFCMAGCPYGARSFN-------FV 176

Query: 68  KINSEYATQWPNIT 81
                 +   PN T
Sbjct: 177 DPRKYLSDPVPNPT 190


>gi|291525181|emb|CBK90768.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale DSM 17629]
          Length = 507

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C+EVCP D            I  ++CI CG C   C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCMEVCPKDAISLDRTTGKSVIDQEKCIKCGRCASVCSYNAIIVQERP 175



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEP 48
           +  E CI C                  C + C +D     EN    I  D+C+ CG C  
Sbjct: 149 IDQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLV 208

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 209 NCPFGAI 215


>gi|238789244|ref|ZP_04633031.1| Tetrathionate reductase subunit B [Yersinia frederiksenii ATCC
           33641]
 gi|238722576|gb|EEQ14229.1| Tetrathionate reductase subunit B [Yersinia frederiksenii ATCC
           33641]
          Length = 244

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+  +  + I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|313114957|ref|ZP_07800452.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622717|gb|EFQ06177.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 516

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSIIDQDKCIKCGRCVGVCPYNAI 171



 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    CV VCP +   + E                     I   +C+ CG C
Sbjct: 151 IDQDKCIKC--GRCVGVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQC 208

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 209 LVNCPFGAI 217


>gi|225570648|ref|ZP_03779671.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM
           15053]
 gi|225160566|gb|EEG73185.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM
           15053]
          Length = 274

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+EVCP D     +    I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKDAVSMVKGRSYIDQEKCIKCGKCKSVCPYDAISRKERP 175



 Score = 41.9 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D     E                     I+ ++C+ CG
Sbjct: 147 SYIDQEKCIKC--GKCKSVCPYDAISRKERPCQKACGVGAIESDNCGRARINNEKCVSCG 204

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 205 MCMVSCPFGAI 215


>gi|78355772|ref|YP_387221.1| hydrogenase-like [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218177|gb|ABB37526.1| hydrogenase-like protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 483

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y  T  C  C    CV+ CP D     +    I PD+C+ CG C   CP  AI     P 
Sbjct: 112 YEATSACRGCLAEACVQHCPKDAVRIVDGKSRIDPDKCVQCGKCMNVCPYHAIVQIPIPC 171

Query: 63  LE 64
            E
Sbjct: 172 EE 173



 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEP 48
           +  + C+ C                  C E CP     + E     I  D CI CG C  
Sbjct: 144 IDPDKCVQCGKCMNVCPYHAIVQIPIPCEESCPTGAISKDECGKQVIDYDRCIFCGKCMA 203

Query: 49  ECPVDAI 55
            CP  A+
Sbjct: 204 ACPFAAV 210


>gi|57640071|ref|YP_182549.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
 gi|62296914|sp|O07835|IORA_PYRKO RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|57158395|dbj|BAD84325.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
          Length = 647

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +VV + C  CK       CP   +        + P  C  CG C   CP DA +P  E
Sbjct: 588 HVVEDKCTGCKICINAYGCPAIYWDPETKKAKVDPTMCWGCGGCAQVCPFDAFEPMKE 645


>gi|284921494|emb|CBG34565.1| putative anaerobic dimethyl sulfoxide reductase, Fe-S subunit
           [Escherichia coli 042]
          Length = 205

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  + CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDENVCIGCRYCHMACPYGAPQYNAE 119


>gi|50123378|ref|YP_052545.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613904|emb|CAG77357.1| anaerobically expressed oxidoreductase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 674

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP     + +N + +  ++CI C  C   CP  A+   T P     + 
Sbjct: 56  CRHCEDAPCASVCPTQALIKKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNPMDNSAIA 115

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 116 HKCDLCADRP 125



 Score = 34.2 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V E CI CK   CV  CP        N +  +      C +C       A 
Sbjct: 83  VQEKCIGCK--SCVLACPFGAMSMVTNPMD-NSAIAHKCDLCADRPEGQAC 130


>gi|313673818|ref|YP_004051929.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940574|gb|ADR19766.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 577

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y+  + C  C+   C  + CP   + + +    I    C  CG+C   C   AI  
Sbjct: 521 YIDPDKCTGCR--ACTRIGCPAISWIKKDRKAFIDEAICTGCGLCIKVCRFGAINQ 574


>gi|291528206|emb|CBK93792.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale M104/1]
          Length = 507

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C+EVCP D            I  ++CI CG C   C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCMEVCPKDAVSLDRTTGKSVIDQEKCIKCGRCASVCSYNAIIVQERP 175



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEP 48
           +  E CI C                  C + C +D     EN    I  D+C+ CG C  
Sbjct: 149 IDQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLV 208

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 209 NCPFGAI 215


>gi|257063349|ref|YP_003143021.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791002|gb|ACV21672.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  +C  CK+  CV+VCP    +  EN    I  D+CI C  C   CP      + E 
Sbjct: 58  YYLPISCQHCKNPACVDVCPTGASHRTENGTVQIDHDKCIGCQFCVMACPYGVRYLNEEE 117


>gi|188025593|ref|ZP_02959171.2| hypothetical protein PROSTU_00970 [Providencia stuartii ATCC 25827]
 gi|188022949|gb|EDU60989.1| hypothetical protein PROSTU_00970 [Providencia stuartii ATCC 25827]
          Length = 208

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C +VCP    ++ E+  + +  + CI C  C   CP  A + D 
Sbjct: 63  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEEVCIGCRYCSMACPYGAPQFDE 121


>gi|313903955|ref|ZP_07837335.1| hydrogenase large subunit domain protein [Eubacterium
           cellulosolvens 6]
 gi|313471104|gb|EFR66426.1| hydrogenase large subunit domain protein [Eubacterium
           cellulosolvens 6]
          Length = 513

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C   C  D    G +   I P +C +CG C   CP +AI     P
Sbjct: 95  SYSVTDNCRKCMGQACKNACKFDAISIGNHRSHIDPTKCRECGKCAQACPYNAIVHLERP 154



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 15/68 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
           +++    C  C                  C + CPV      E  +  I  ++CI+CG C
Sbjct: 126 SHIDPTKCRECGKCAQACPYNAIVHLERPCKKACPVGAITYNEYGICIIDEEKCINCGHC 185

Query: 47  EPECPVDA 54
              CP  A
Sbjct: 186 IHACPFGA 193


>gi|257466098|ref|ZP_05630409.1| hydrogenase, Fe-only [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917255|ref|ZP_07913495.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691130|gb|EFS27965.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 652

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C          +    C  CG C   CPV AI    
Sbjct: 219 FKITEKCIGC--TACARVCPVQCITGAPKKRHFLDTSRCTHCGQCVSACPVGAIFEGD 274



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           ++ T  C  C    CV  CPV   +EG++ L
Sbjct: 249 FLDTSRCTHC--GQCVSACPVGAIFEGDHTL 277


>gi|15603620|ref|NP_246694.1| DmsB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722171|gb|AAK03839.1| DmsB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 206

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C +  CV VCP    ++ E+   I +   CI C  C   CP DA + D
Sbjct: 61  AYYLSISCNHCDNPACVSVCPTGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYD 118


>gi|157157756|ref|YP_001462877.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|157079786|gb|ABV19494.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
          Length = 205

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|170679927|ref|YP_001743666.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
 gi|170517645|gb|ACB15823.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
          Length = 205

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI    C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGYRYCHMACPYGAPQYNAE 119


>gi|119720028|ref|YP_920523.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525148|gb|ABL78520.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 187

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y++   C  C++  CV VCP    Y   + L  I+PD CI C  C   CP      D +
Sbjct: 55  PYILLVQCQHCENAPCVAVCPTGASYIDRDGLVKINPDLCIGCKYCMTACPYGMRWLDPD 114


>gi|85704196|ref|ZP_01035299.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85671516|gb|EAQ26374.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 653

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+++CP        + ++I P  C  CG C   CP  AI  D  P    + +I
Sbjct: 277 TGCSK--CLDICPTGAITPDGDHVSIDPMICAGCGACAARCPSGAITYDAPPPDMTFRRI 334



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T+ C LC    CV +CP       E +  L    D C+ CG+C   CP  AI  +
Sbjct: 500 VNTDACTLCL--SCVSLCPSGALMDNEDKPQLRFQEDACLQCGICATICPEKAITLE 554


>gi|238783741|ref|ZP_04627760.1| Tetrathionate reductase subunit B [Yersinia bercovieri ATCC 43970]
 gi|238715292|gb|EEQ07285.1| Tetrathionate reductase subunit B [Yersinia bercovieri ATCC 43970]
          Length = 244

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+  +  + I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|89897355|ref|YP_520842.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336803|dbj|BAE86398.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 228

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C  C +  CV+ CP    Y+ +  L   +P++CI C  C   CP + I  +++   
Sbjct: 54  VPTLCNHCDNAACVKACPTKAMYKDDKGLTLHNPNKCIGCKSCMQACPYEVINYNSKEPH 113

Query: 64  ELWLK 68
            +W  
Sbjct: 114 GIWRD 118


>gi|295094467|emb|CBK83558.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus
           sp. ART55/1]
          Length = 484

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YVVT+NC  C    C + C       G +   I P +C +CG C   CP +AI
Sbjct: 94  YVVTDNCQKCMGRACQQACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAI 146



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 17/71 (23%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF---LAIHPDECIDCG 44
           +Y+    C  C                  C++ CPV      EN      I  D+CIDCG
Sbjct: 124 SYIDPSKCKECGQCAKACPYNAIADLMRPCIKSCPVGAISVAENGTGIAVIDKDKCIDCG 183

Query: 45  VCEPECPVDAI 55
            C  +CP  AI
Sbjct: 184 SCIHKCPFGAI 194


>gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 595

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + + CI C  T C  VCPV+C   + +    I    CI CG C   C   AI
Sbjct: 541 YSINDKCIGC--TACARVCPVNCIAGKVKEKHVIDQSVCIKCGACYSTCKFGAI 592


>gi|238749691|ref|ZP_04611196.1| Tetrathionate reductase subunit B [Yersinia rohdei ATCC 43380]
 gi|238712346|gb|EEQ04559.1| Tetrathionate reductase subunit B [Yersinia rohdei ATCC 43380]
          Length = 244

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+  +  + I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|197286794|ref|YP_002152666.1| anaerobic reductase component B [Proteus mirabilis HI4320]
 gi|227355015|ref|ZP_03839426.1| anaerobic reductase component B [Proteus mirabilis ATCC 29906]
 gi|194684281|emb|CAR45833.1| putative anaerobic reductase component B [Proteus mirabilis HI4320]
 gi|227164802|gb|EEI49649.1| anaerobic reductase component B [Proteus mirabilis ATCC 29906]
          Length = 213

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+ CP    +  EG+  + +  D+C+ CG C   CP  A + D 
Sbjct: 71  AYTLSISCNHCDDPICVKNCPTTAMHKREGDGIVMVDTDKCVGCGACAWSCPYGAPQMDP 130

Query: 60  EPGLE 64
           E    
Sbjct: 131 ETKQM 135


>gi|149201541|ref|ZP_01878515.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|149144589|gb|EDM32618.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 651

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+++CP        + ++I P  C  CG C   CP  AI  D  P    + +I
Sbjct: 277 TGCSK--CLDICPTGAISPDGDHVSIDPMICAGCGACAARCPSGAITYDAPPPDMTFRRI 334



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V TE+C LC    CV +CP       E +  L    D C+ CG+C   CP  AI  +
Sbjct: 498 VNTESCTLCL--SCVSLCPSGALMDNEDKPQLRFQEDACLQCGICATICPEKAITLE 552


>gi|300087162|ref|YP_003757684.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526895|gb|ADJ25363.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 265

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTEPGL 63
           V++ C+ C    CV VCPV   ++  N   +  + +CI C  C+  CP D  K + +   
Sbjct: 66  VSKRCLHCFSPACVSVCPVGALHKEANGAVVWEEGKCIGCRYCQNACPFDIPKFEWDEPW 125

Query: 64  EL 65
             
Sbjct: 126 PK 127


>gi|257452106|ref|ZP_05617405.1| hydrogenase, Fe-only [Fusobacterium sp. 3_1_5R]
 gi|317058652|ref|ZP_07923137.1| hydrogenase [Fusobacterium sp. 3_1_5R]
 gi|313684328|gb|EFS21163.1| hydrogenase [Fusobacterium sp. 3_1_5R]
          Length = 652

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C          +    C  CG C   CPV AI    
Sbjct: 219 FKITEKCIGC--TACARVCPVQCITGAPKKRHFLDTSRCTHCGQCVSACPVGAIFEGD 274



 Score = 37.7 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           ++ T  C  C    CV  CPV   +EG++ L
Sbjct: 249 FLDTSRCTHC--GQCVSACPVGAIFEGDHTL 277


>gi|212705024|ref|ZP_03313152.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098]
 gi|212671576|gb|EEB32059.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098]
          Length = 480

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C  C    C+  C             I P++C +CG+C   CP  AI
Sbjct: 116 YYVTDACQGCVARSCIGSCRFGAISFSRGRSTIDPEKCRNCGMCMDACPYHAI 168



 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 15/72 (20%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEP 48
           +  E C  C                  C   CPV   ++G      I  ++C  CG C  
Sbjct: 148 IDPEKCRNCGMCMDACPYHAIVRLNVPCEAACPVRAIHKGNKGRAEIDFEKCTSCGRCMR 207

Query: 49  ECPVDAIKPDTE 60
            CP  A+   +E
Sbjct: 208 ACPFGAVMERSE 219


>gi|163814709|ref|ZP_02206098.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759]
 gi|158450344|gb|EDP27339.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759]
          Length = 484

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YVVT+NC  C    C + C       G +   I P +C +CG C   CP +AI
Sbjct: 94  YVVTDNCQKCMGRACQQACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAI 146



 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 17/71 (23%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF---LAIHPDECIDCG 44
           +Y+    C  C                  C++ CPV      EN      I  D+CIDCG
Sbjct: 124 SYIDPSKCKECGQCAKACPYNAIADLMRPCIKSCPVGAISVAENGTGIAVIDKDKCIDCG 183

Query: 45  VCEPECPVDAI 55
            C  +CP  AI
Sbjct: 184 SCIHKCPFGAI 194


>gi|144898934|emb|CAM75798.1| Hdr-like menaquinol oxidoreductase subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 243

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    CV+VCP     +  + +  +    CI C  C   CP  A     E   + 
Sbjct: 106 CQHCAKPPCVDVCPTGASMKRADGIVLVDRHICIGCRYCMMACPYKARSFAHEDQSKQ 163


>gi|331660380|ref|ZP_08361315.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
 gi|331052647|gb|EGI24683.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
          Length = 205

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|253699697|ref|YP_003020886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251774547|gb|ACT17128.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 260

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V + C  C +  CV+VCPV   Y+ E+ +  +    CI CG C   CP       
Sbjct: 126 AFFVPKLCNQCDNPPCVQVCPVGATYQTEDGVVLVDRKWCIGCGYCIMGCPYGVRFFH 183


>gi|154502471|ref|ZP_02039531.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149]
 gi|153796867|gb|EDN79287.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149]
          Length = 506

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP            I  ++CI CG C+  CP DAI     P
Sbjct: 119 YEVSNMCKGCLAHPCSEVCPKGAISMVNGKSYIDQEKCIKCGKCKAVCPYDAIAKKERP 177



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     I  ++C+ CG
Sbjct: 149 SYIDQEKCIKC--GKCKAVCPYDAIAKKERPCKNACGVGAIVSDKYGRAYIDTEKCVSCG 206

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 207 MCMVSCPFGAI 217


>gi|283833812|ref|ZP_06353553.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291070479|gb|EFE08588.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 205

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|303246144|ref|ZP_07332425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302492540|gb|EFL52411.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 242

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C+ VCPV   Y+  +  + I   +C+ CG C   CP  A   + E
Sbjct: 92  CNHCEKPACIPVCPVKATYQRPDGIVVIDGTKCLGCGFCVQACPYGARFLNHE 144


>gi|254462867|ref|ZP_05076283.1| 4Fe-4S binding domain protein [Rhodobacterales bacterium HTCC2083]
 gi|206679456|gb|EDZ43943.1| 4Fe-4S binding domain protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 257

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D    +  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMDASEKVMK 140


>gi|78357317|ref|YP_388766.1| reductase, iron-sulfur binding subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219722|gb|ABB39071.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 258

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCP    Y+  + +  +    CI C  C   CP  A
Sbjct: 120 CNHCENPPCVRVCPTKATYKRPDGIVAMDYHRCIGCRFCMAGCPYGA 166


>gi|302342004|ref|YP_003806533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301638617|gb|ADK83939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 279

 Score = 57.3 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C++  CV VCP    ++ E+ +  +    CI C  C   CP  +   + +     +
Sbjct: 129 CNHCQNPPCVRVCPTQATFKREDGIVMMDMHRCIGCRFCMAACPYGSRSFNFKDPRAAY 187


>gi|294635459|ref|ZP_06713947.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
 gi|291091192|gb|EFE23753.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
          Length = 218

 Score = 57.3 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C  C    C++VCP    +  EN +  ++P +CI CG C   CP  A   D    +  
Sbjct: 88  QACQHCDQAPCIDVCPTGASWRDENGIVRVNPADCIGCGYCVSACPYQARYLDPRRHVAD 147

Query: 66  WLKINSE--YATQWPNI 80
                 E   A  +P I
Sbjct: 148 KCDFCCESRLAKGFPPI 164


>gi|74312090|ref|YP_310509.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|73855567|gb|AAZ88274.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|323164414|gb|EFZ50217.1| dimethylsulfoxide reductase, chain B [Shigella sonnei 53G]
          Length = 205

 Score = 57.3 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|323978273|gb|EGB73359.1| dimethylsulfoxide reductase [Escherichia coli TW10509]
          Length = 205

 Score = 57.3 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|255525714|ref|ZP_05392646.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
 gi|255510616|gb|EET86924.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
          Length = 458

 Score = 57.3 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C  C    C+EVCP +          I+ + C +CG+C   CP  AI
Sbjct: 67  YTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAI 119



 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
            Y+  E C  C                  C  VCP              I  +ECI+CG 
Sbjct: 97  AYINQELCKECGMCRKSCPYGAIAEVMRPCKRVCPTGALEINSDNKMAMIEKEECINCGA 156

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       + +N++  YA   P I+ +   
Sbjct: 157 CMAACPFGAISDKSYIKDVTNVLVNNKKVYAVVAPAISGQFGP 199


>gi|312113372|ref|YP_004010968.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218501|gb|ADP69869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 249

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV+VCP    ++  + +  +    CI C  C   CP  A     EP  + 
Sbjct: 112 CQHCANAPCVDVCPTGASFKRADGIVLVDRHICIGCRYCMMACPYKARSFVHEPVADQ 169


>gi|320177371|gb|EFW52372.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella
           dysenteriae CDC 74-1112]
          Length = 205

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|288931804|ref|YP_003435864.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894052|gb|ADC65589.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 251

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y V + C  C    CV+VCPV   Y+ ++ +  +    CI C  C   CP  A      
Sbjct: 110 SYFVPKLCNHCDRPPCVQVCPVGATYKTKDGVILVDEKYCIGCRYCIQACPYGARYLYPF 169

Query: 61  PGLEL 65
            G   
Sbjct: 170 DGPRE 174


>gi|15802003|ref|NP_288024.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           EDL933]
 gi|15831549|ref|NP_310322.1| oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|16129547|ref|NP_416106.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|26247834|ref|NP_753874.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           CFT073]
 gi|82776844|ref|YP_403193.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|89108430|ref|AP_002210.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           W3110]
 gi|91210799|ref|YP_540785.1| Fe-S subunit oxidoreductase [Escherichia coli UTI89]
 gi|117623775|ref|YP_852688.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli APEC O1]
 gi|157161048|ref|YP_001458366.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|168750603|ref|ZP_02775625.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168757500|ref|ZP_02782507.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168763713|ref|ZP_02788720.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168771685|ref|ZP_02796692.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168775813|ref|ZP_02800820.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168783406|ref|ZP_02808413.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168789420|ref|ZP_02814427.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168800843|ref|ZP_02825850.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170020058|ref|YP_001725012.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|170081253|ref|YP_001730573.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|191165925|ref|ZP_03027762.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|193064916|ref|ZP_03045992.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|193066892|ref|ZP_03047861.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194426027|ref|ZP_03058583.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194436394|ref|ZP_03068495.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|195938978|ref|ZP_03084360.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
 gi|208810651|ref|ZP_03252527.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208817045|ref|ZP_03258165.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821725|ref|ZP_03262045.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399816|ref|YP_002270660.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918901|ref|YP_002292985.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE11]
 gi|215486764|ref|YP_002329195.1| oxidoreductase, Fe-S subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328606|ref|ZP_03444687.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|218554156|ref|YP_002387069.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI1]
 gi|218558459|ref|YP_002391372.1| oxidoreductase, Fe-S subunit [Escherichia coli S88]
 gi|218689509|ref|YP_002397721.1| oxidoreductase, Fe-S subunit [Escherichia coli ED1a]
 gi|218695151|ref|YP_002402818.1| oxidoreductase, Fe-S subunit [Escherichia coli 55989]
 gi|218699845|ref|YP_002407474.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI39]
 gi|218705088|ref|YP_002412607.1| oxidoreductase, Fe-S subunit [Escherichia coli UMN026]
 gi|227886054|ref|ZP_04003859.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|237705528|ref|ZP_04536009.1| dimethylsulfoxide reductase subunit [Escherichia sp. 3_2_53FAA]
 gi|238900804|ref|YP_002926600.1| oxidoreductase, Fe-S subunit [Escherichia coli BW2952]
 gi|253773455|ref|YP_003036286.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161650|ref|YP_003044758.1| oxidoreductase, Fe-S subunit [Escherichia coli B str. REL606]
 gi|254793206|ref|YP_003078043.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018219|ref|ZP_05432084.1| oxidoreductase, Fe-S subunit [Shigella sp. D9]
 gi|256022751|ref|ZP_05436616.1| oxidoreductase, Fe-S subunit [Escherichia sp. 4_1_40B]
 gi|260843893|ref|YP_003221671.1| oxidoreductase, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|260855390|ref|YP_003229281.1| oxidoreductase, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|260868080|ref|YP_003234482.1| oxidoreductase, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|261227967|ref|ZP_05942248.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258299|ref|ZP_05950832.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282721|ref|YP_003499539.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. CB9615]
 gi|293405090|ref|ZP_06649082.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1412]
 gi|293409899|ref|ZP_06653475.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414905|ref|ZP_06657548.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           B185]
 gi|293445963|ref|ZP_06662385.1| dimethyl sulfoxide reductase subunit YnfG [Escherichia coli B088]
 gi|298380736|ref|ZP_06990335.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1302]
 gi|301029227|ref|ZP_07192340.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|306813449|ref|ZP_07447639.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli NC101]
 gi|307138239|ref|ZP_07497595.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli H736]
 gi|307310841|ref|ZP_07590487.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|309788770|ref|ZP_07683366.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
 gi|312966654|ref|ZP_07780874.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|312969603|ref|ZP_07783786.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|331642172|ref|ZP_08343307.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331647075|ref|ZP_08348169.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
 gi|331652977|ref|ZP_08353982.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|331663058|ref|ZP_08363968.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331668261|ref|ZP_08369109.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331677447|ref|ZP_08378122.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331683095|ref|ZP_08383696.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332279270|ref|ZP_08391683.1| oxidoreductase [Shigella sp. D9]
 gi|77416847|sp|P0AAJ2|YNFG_ECOL6 RecName: Full=Probable anaerobic dimethyl sulfoxide reductase chain
           ynfG; AltName: Full=DMSO reductase iron-sulfur subunit
           ynfG
 gi|77416848|sp|P0AAJ1|YNFG_ECOLI RecName: Full=Probable anaerobic dimethyl sulfoxide reductase chain
           ynfG; AltName: Full=DMSO reductase iron-sulfur subunit
           ynfG
 gi|12515564|gb|AAG56576.1|AE005382_10 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|26108237|gb|AAN80439.1|AE016761_14 Probable anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli CFT073]
 gi|1742612|dbj|BAA15313.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13361761|dbj|BAB35718.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|81240992|gb|ABB61702.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|91072373|gb|ABE07254.1| Fe-S subunit oxidoreductase [Escherichia coli UTI89]
 gi|115512899|gb|ABJ00974.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli APEC O1]
 gi|157066728|gb|ABV05983.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|169754986|gb|ACA77685.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|169889088|gb|ACB02795.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187768665|gb|EDU32509.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188015250|gb|EDU53372.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188999242|gb|EDU68228.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189355556|gb|EDU73975.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189359615|gb|EDU78034.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189366172|gb|EDU84588.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189370961|gb|EDU89377.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189376913|gb|EDU95329.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190904056|gb|EDV63768.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|192927403|gb|EDV82021.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|192959482|gb|EDV89916.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194416082|gb|EDX32348.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194424426|gb|EDX40412.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|208725167|gb|EDZ74874.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731388|gb|EDZ80077.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741848|gb|EDZ89530.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161216|gb|ACI38649.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209770048|gb|ACI83336.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770050|gb|ACI83337.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770052|gb|ACI83338.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770054|gb|ACI83339.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770056|gb|ACI83340.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209912160|dbj|BAG77234.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE11]
 gi|215264836|emb|CAS09221.1| oxidoreductase, Fe-S subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217317953|gb|EEC26380.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351883|emb|CAU97608.1| oxidoreductase, Fe-S subunit [Escherichia coli 55989]
 gi|218360924|emb|CAQ98496.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI1]
 gi|218365228|emb|CAR02949.1| oxidoreductase, Fe-S subunit [Escherichia coli S88]
 gi|218369831|emb|CAR17602.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI39]
 gi|218427073|emb|CAR07952.2| oxidoreductase, Fe-S subunit [Escherichia coli ED1a]
 gi|218432185|emb|CAR13073.1| oxidoreductase, Fe-S subunit [Escherichia coli UMN026]
 gi|222033347|emb|CAP76088.1| anaerobic dimethyl sulfoxide reductase chain [Escherichia coli
           LF82]
 gi|226900285|gb|EEH86544.1| dimethylsulfoxide reductase subunit [Escherichia sp. 3_2_53FAA]
 gi|227836983|gb|EEJ47449.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|238861969|gb|ACR63967.1| oxidoreductase, Fe-S subunit [Escherichia coli BW2952]
 gi|242377320|emb|CAQ32065.1| oxidoreductase, predicted Fe-S subunit, subunit of putative
           selenate reductase [Escherichia coli BL21(DE3)]
 gi|253324499|gb|ACT29101.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973551|gb|ACT39222.1| oxidoreductase, Fe-S subunit [Escherichia coli B str. REL606]
 gi|253977746|gb|ACT43416.1| oxidoreductase, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|254592606|gb|ACT71967.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|257754039|dbj|BAI25541.1| oxidoreductase, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|257759040|dbj|BAI30537.1| oxidoreductase, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|257764436|dbj|BAI35931.1| oxidoreductase, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|260449289|gb|ACX39711.1| dimethylsulfoxide reductase, chain B [Escherichia coli DH1]
 gi|281178659|dbj|BAI54989.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE15]
 gi|290762594|gb|ADD56555.1| Probable anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. CB9615]
 gi|291322793|gb|EFE62221.1| dimethyl sulfoxide reductase subunit YnfG [Escherichia coli B088]
 gi|291427298|gb|EFF00325.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1412]
 gi|291432553|gb|EFF05532.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           B185]
 gi|291470367|gb|EFF12851.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491574|gb|ADE90330.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           IHE3034]
 gi|298278178|gb|EFI19692.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1302]
 gi|299877863|gb|EFI86074.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|305853194|gb|EFM53634.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli NC101]
 gi|306909019|gb|EFN39515.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|307553559|gb|ADN46334.1| dimethylsulfoxide reductase, B subunit [Escherichia coli ABU 83972]
 gi|307626925|gb|ADN71229.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli UM146]
 gi|308923404|gb|EFP68915.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
 gi|310337888|gb|EFQ02977.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|312288764|gb|EFR16664.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|312946189|gb|ADR27016.1| oxidoreductase, Fe-S subunit [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315060895|gb|ADT75222.1| oxidoreductase, Fe-S subunit [Escherichia coli W]
 gi|315136229|dbj|BAJ43388.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli DH1]
 gi|315619043|gb|EFU99625.1| dimethylsulfoxide reductase, chain B [Escherichia coli 3431]
 gi|320188273|gb|EFW62935.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197771|gb|EFW72379.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           EC4100B]
 gi|320641943|gb|EFX11307.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H7 str. G5101]
 gi|320647259|gb|EFX16067.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H- str. 493-89]
 gi|320652552|gb|EFX20821.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H- str. H 2687]
 gi|320653073|gb|EFX21267.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658761|gb|EFX26435.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668612|gb|EFX35417.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H7 str. LSU-61]
 gi|323152910|gb|EFZ39180.1| dimethylsulfoxide reductase, chain B [Escherichia coli EPECa14]
 gi|323163340|gb|EFZ49167.1| dimethylsulfoxide reductase, chain B [Escherichia coli E128010]
 gi|323169880|gb|EFZ55536.1| dimethylsulfoxide reductase, chain B [Escherichia coli LT-68]
 gi|323180903|gb|EFZ66441.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1180]
 gi|323185873|gb|EFZ71230.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1357]
 gi|323187212|gb|EFZ72526.1| dimethylsulfoxide reductase, chain B [Escherichia coli RN587/1]
 gi|323378536|gb|ADX50804.1| dimethylsulfoxide reductase, chain B [Escherichia coli KO11]
 gi|323937383|gb|EGB33661.1| dimethylsulfoxide reductase [Escherichia coli E1520]
 gi|323940336|gb|EGB36528.1| dimethylsulfoxide reductase [Escherichia coli E482]
 gi|323947977|gb|EGB43971.1| dimethylsulfoxide reductase [Escherichia coli H120]
 gi|323952573|gb|EGB48445.1| dimethylsulfoxide reductase [Escherichia coli H252]
 gi|323956753|gb|EGB52488.1| dimethylsulfoxide reductase [Escherichia coli H263]
 gi|323962219|gb|EGB57811.1| dimethylsulfoxide reductase [Escherichia coli H489]
 gi|323973778|gb|EGB68952.1| dimethylsulfoxide reductase [Escherichia coli TA007]
 gi|324119343|gb|EGC13230.1| dimethylsulfoxide reductase [Escherichia coli E1167]
 gi|326341954|gb|EGD65735.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
 gi|326343504|gb|EGD67266.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|330911395|gb|EGH39905.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           AA86]
 gi|331038970|gb|EGI11190.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331043858|gb|EGI15994.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
 gi|331049075|gb|EGI21147.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|331058857|gb|EGI30834.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331063455|gb|EGI35366.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331073907|gb|EGI45227.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331079310|gb|EGI50507.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332091391|gb|EGI96477.1| dimethylsulfoxide reductase, chain B [Shigella boydii 5216-82]
 gi|332101622|gb|EGJ04968.1| oxidoreductase [Shigella sp. D9]
 gi|332343306|gb|AEE56640.1| dimethylsulfoxide reductase, chain B DmsB [Escherichia coli UMNK88]
          Length = 205

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|295106638|emb|CBL04181.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 258

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   CV VCP    ++ ++ +  +    CI C  C   CP  A
Sbjct: 114 CNHCEEPPCVRVCPTKATFKRDDGIVEMDYHRCIGCRFCMAACPYGA 160


>gi|269217314|ref|ZP_06161168.1| thiosulfate reductase electron transport protein phsb [Slackia
           exigua ATCC 700122]
 gi|269129451|gb|EEZ60536.1| thiosulfate reductase electron transport protein phsb [Slackia
           exigua ATCC 700122]
          Length = 179

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C+ C+   C  VCP    Y  E+ +  I    CI C  C   CP  A   D 
Sbjct: 53  VIPSQCMHCEDAPCQTVCPTGATYTNEDGIVCIDHGRCIGCKYCMAACPYRARVVDE 109


>gi|262066053|ref|ZP_06025665.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380303|gb|EFE87821.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum
           ATCC 33693]
          Length = 206

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C    CVEVCP +C         I  + C+ CG C   CPV A+
Sbjct: 153 YFITDKCIGCNK--CVEVCPQNCIITDSVPYVIEQNHCLHCGNCFTVCPVGAV 203


>gi|158634530|gb|ABW76117.1| Fe-hydrogenase 2 [Trimastix pyriformis]
          Length = 292

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI
Sbjct: 115 AYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGSCQKVCPYHAI 168



 Score = 40.7 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 15/64 (23%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    +G N    I  ++CI CG C+ 
Sbjct: 148 IDPDLCVRCGSCQKVCPYHAIVKLTVPCEEACPVGAIAKGANGHAEIDFNKCIHCGQCQV 207

Query: 49  ECPV 52
           +CP 
Sbjct: 208 KCPF 211


>gi|56478640|ref|YP_160229.1| molybdenum enzyme, medium subunit,related to phenylacetyl-CoA:
           acceptor oxidoreductase [Aromatoleum aromaticum EbN1]
 gi|56314683|emb|CAI09328.1| Molybdenum enzyme, medium subunit,related to phenylacetyl-CoA:
           acceptor oxidoreductase [Aromatoleum aromaticum EbN1]
          Length = 200

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   CVEVCP    ++ ++ +  I PD+C+ C  C   CP      + +P  
Sbjct: 57  CNHCEDPPCVEVCPTGASFKCDDGIVDIDPDKCVGCRTCMMACPYGNRYFNDKPQH 112


>gi|303328543|ref|ZP_07358979.1| tetrathionate reductase complex, subunit B [Desulfovibrio sp.
           3_1_syn3]
 gi|302861374|gb|EFL84312.1| tetrathionate reductase complex, subunit B [Desulfovibrio sp.
           3_1_syn3]
          Length = 245

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  CK   C+ VCPV   Y+ +N  + I    CI CG C   CP DA
Sbjct: 95  CNHCKEPACLPVCPVKATYQHDNGIVVIDASACIGCGFCVQACPYDA 141


>gi|333006115|gb|EGK25625.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-272]
 gi|333018950|gb|EGK38243.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-227]
          Length = 205

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|30063104|ref|NP_837275.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|30041353|gb|AAP17082.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|281601024|gb|ADA74008.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Shigella flexneri 2002017]
 gi|313649044|gb|EFS13480.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2a str.
           2457T]
 gi|332757173|gb|EGJ87511.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 4343-70]
 gi|332758411|gb|EGJ88732.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-671]
 gi|332766983|gb|EGJ97182.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2930-71]
 gi|333003851|gb|EGK23386.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-218]
 gi|333005235|gb|EGK24755.1| dimethylsulfoxide reductase, chain B [Shigella flexneri VA-6]
 gi|333017930|gb|EGK37235.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-304]
          Length = 205

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|296135781|ref|YP_003643023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295795903|gb|ADG30693.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 275

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D +
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRQEDGIVLVDSDKCIGCKYCSWACPYGAREYDED 126



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V ++ CI CK+  C   CP       E+   +       C +C      ++I  
Sbjct: 101 VDSDKCIGCKY--CSWACPYGAREYDEDRGVM-----TKCTLCVDRIYDESIPQ 147


>gi|257063420|ref|YP_003143092.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256791073|gb|ACV21743.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 210

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           Y ++  C  C + +CV VCP    ++ +   + ++ + C+ CG C   CP  A   D
Sbjct: 59  YHISLACNHCANPECVHVCPTGAMHKNDLGLVVVNNERCVGCGYCTIACPYHAPSID 115


>gi|74317757|ref|YP_315497.1| putative tetrathionate reductase subunit B [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057252|gb|AAZ97692.1| putative tetrathionate reductase subunit B [Thiobacillus
           denitrificans ATCC 25259]
          Length = 245

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TY++   C  C++  CV VCPV   ++ ++  + +  D C+ C  C   CP DA   + E
Sbjct: 89  TYMLPRLCNHCENPPCVPVCPVGATFKRDDGIVVVDGDRCVGCAYCVQACPYDARFINHE 148

Query: 61  PGLEL 65
                
Sbjct: 149 TNKAD 153


>gi|332289328|ref|YP_004420180.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
 gi|330432224|gb|AEC17283.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
          Length = 241

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   Y+ ++  + I  + C+ C  C   CP DA   + E
Sbjct: 97  CNHCDNPPCVPVCPVQATYQQKDGIVVIDNERCVGCAYCVQACPYDARFINEE 149


>gi|309701815|emb|CBJ01127.1| putative anaerobic dimethyl sulfoxide reductase, Fe-S subunit
           [Escherichia coli ETEC H10407]
          Length = 205

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|269138998|ref|YP_003295699.1| tetrathionate reductase, subunit B [Edwardsiella tarda EIB202]
 gi|267984659|gb|ACY84488.1| tetrathionate reductase, subunit B [Edwardsiella tarda EIB202]
 gi|304558934|gb|ADM41598.1| Tetrathionate reductase subunit B [Edwardsiella tarda FL6-60]
          Length = 254

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCPV   Y+ ++ +  +    C+ C  C   CP DA
Sbjct: 108 CNHCENPPCVAVCPVQATYQRDDGIVMVDNRRCVGCAYCIQACPYDA 154


>gi|258406585|ref|YP_003199327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257798812|gb|ACV69749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 371

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    C+ VCP            L +   +CI C  C   C  +A++ D    +  +
Sbjct: 195 CTGC--GQCLPVCPAGALTIDSQSKTLLLDTAQCIGCAACILACRHNALQVDWTSSVTAF 252

Query: 67  LKINSEYAT 75
            +  +EYA 
Sbjct: 253 QERMAEYAA 261


>gi|237755465|ref|ZP_04584088.1| sulfur reductase FeS subunit [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692365|gb|EEP61350.1| sulfur reductase FeS subunit [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 211

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  C++  C  +CPV   +   N +  +  + CI C  C   CP +AI  D
Sbjct: 51  HFVPLRCNHCENAPCERICPVSALHYLPNGIVNVDHNRCIGCASCMMACPYNAIYID 107


>gi|212711736|ref|ZP_03319864.1| hypothetical protein PROVALCAL_02811 [Providencia alcalifaciens DSM
           30120]
 gi|212685838|gb|EEB45366.1| hypothetical protein PROVALCAL_02811 [Providencia alcalifaciens DSM
           30120]
          Length = 208

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++ E+  + +    CI C  C   CP  A + D
Sbjct: 63  AYYLSISCNHCDDPACAKVCPSGAMHKREDGFVVVDEAVCIGCRYCSMACPYGAPQFD 120


>gi|238791355|ref|ZP_04634994.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia intermedia
           ATCC 29909]
 gi|238729488|gb|EEQ21003.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia intermedia
           ATCC 29909]
          Length = 205

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    C +VCP    ++ ++  + ++ D CI C  C   CP  A + D 
Sbjct: 60  AYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDE 118


>gi|188997094|ref|YP_001931345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932161|gb|ACD66791.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 211

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  C++  C  +CPV   +   N +  +  + CI C  C   CP +AI  D
Sbjct: 51  HFVPLRCNHCENAPCERICPVSALHYLPNGIVNVDHNRCIGCASCMMACPYNAIYID 107


>gi|330835151|ref|YP_004409879.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           (SreB-like ferredoxin) [Metallosphaera cuprina Ar-4]
 gi|329567290|gb|AEB95395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           (SreB-like ferredoxin) [Metallosphaera cuprina Ar-4]
          Length = 274

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  CVEVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 90  YNIPINCFHCMNAPCVEVCPVGATFKRTQDGIVLVDYEECIGTKYCIYACPYGNRFFDYI 149

Query: 61  PGLEL 65
            G+  
Sbjct: 150 EGVTK 154


>gi|297617551|ref|YP_003702710.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145388|gb|ADI02145.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 582

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M YV  E C  C+   C+++ C    + E E    I+P+ C+ CG+C   C +DAI
Sbjct: 523 MYYVDEEACKGCRL--CIKIGCTGIYWIEEERIARINPNLCVGCGLCAQICKLDAI 576


>gi|260769814|ref|ZP_05878747.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio furnissii
           CIP 102972]
 gi|260615152|gb|EEX40338.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio furnissii
           CIP 102972]
 gi|315182188|gb|ADT89101.1| dimethylsulfoxide reductase, chain B [Vibrio furnissii NCTC 11218]
          Length = 209

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  CV+VCP    ++ +    + +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCSNPACVKVCPSGAMHKRDEDGLVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  E 60
           E
Sbjct: 122 E 122


>gi|78776698|ref|YP_393013.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497238|gb|ABB43778.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
          Length = 212

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C++  C  +CPV   +  EN +  I  + CI C  C   CP  AI  D
Sbjct: 56  RCNHCENAPCERICPVSALHYLENGIVNIDKERCIGCSGCVMACPYGAIYID 107



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 18/67 (26%), Gaps = 10/67 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDA-I 55
           +  E CI C    CV  CP    Y                         C   CPV A I
Sbjct: 84  IDKERCIGCSG--CVMACPYGAIYIDPQTQTADKCTYCAHRVASSMMPACVVACPVQANI 141

Query: 56  KPDTEPG 62
             D E  
Sbjct: 142 FGDLEDP 148


>gi|238784110|ref|ZP_04628124.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia bercovieri
           ATCC 43970]
 gi|238714956|gb|EEQ06954.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia bercovieri
           ATCC 43970]
          Length = 204

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    C +VCP    ++ ++  + ++ D CI C  C   CP  A + D 
Sbjct: 59  AYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDE 117


>gi|332654222|ref|ZP_08419966.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae
           bacterium D16]
 gi|332517308|gb|EGJ46913.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae
           bacterium D16]
          Length = 505

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 23/51 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT  C  C    C+EVCP D     +    I   +CI CG C   CP  AI
Sbjct: 116 VTNMCQGCLAHPCMEVCPKDAISLVQGKSFIDQTKCIKCGKCADACPYGAI 166



 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++    CI C    C + CP     + E                     I  D+C+ CG
Sbjct: 144 SFIDQTKCIKC--GKCADACPYGAILKLERPCAEACGMDAIGSDELGRAKIDYDKCVSCG 201

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 202 MCLVNCPFGAI 212


>gi|269104673|ref|ZP_06157369.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161313|gb|EEZ39810.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 207

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y V+ +C  C    C + CP    ++ E    + +    C+ C  CE  CP  A + ++
Sbjct: 61  AYYVSISCNHCSQPACTKACPTGAMHKREQDGLVVVDEQVCVGCRYCEMACPYGAPQYNS 120

Query: 60  EPGLE 64
           E    
Sbjct: 121 EKKHM 125


>gi|255021904|ref|ZP_05293914.1| Respiratory nitrate reductase beta chain [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968728|gb|EET26280.1| Respiratory nitrate reductase beta chain [Acidithiobacillus caldus
           ATCC 51756]
          Length = 517

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+   +  + I  D C    +C   CP   +  + E
Sbjct: 183 CNHCLNPACVAACPSGAIYKRGEDGIVLIDQDRCRGWRMCISACPYKKVYFNWE 236


>gi|95930556|ref|ZP_01313291.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133391|gb|EAT15055.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
          Length = 615

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T +CI C+   CVE   CP     E      +  D CI CG C P CPV AI
Sbjct: 552 ITSDCIGCR--RCVEAFECPALSMDEATTMAVLDQDRCIGCGTCIPVCPVHAI 602



 Score = 36.5 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDC 25
           M  +  + CI C    C+ VCPV  
Sbjct: 579 MAVLDQDRCIGC--GTCIPVCPVHA 601


>gi|83312476|ref|YP_422740.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82947317|dbj|BAE52181.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 231

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           + V   C  C    CV+VCP     +  + +  +    CI C  C   CP  A     E 
Sbjct: 88  HSVPVMCQHCAKPACVDVCPTGASMKRADGIVLVDRHICIGCRYCMMACPYKARSFAHEE 147

Query: 62  G 62
            
Sbjct: 148 Q 148


>gi|91975987|ref|YP_568646.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
 gi|91682443|gb|ABE38745.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Rhodopseudomonas palustris BisB5]
          Length = 217

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C +  CVEVCP       E+ L  I  D CI C  C   CP DA   + +P  
Sbjct: 58  ACMHCANPPCVEVCPTTATRRREDGLVTIDYDICIGCANCIMACPYDARSIEHQPRY 114


>gi|308049780|ref|YP_003913346.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307631970|gb|ADN76272.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 233

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C +  CVEVCP    Y+ +N L +H +E CI C  C   CP   I  +     
Sbjct: 53  IPTLCNHCDNAACVEVCPTGAMYKADNGLTLHRNEDCIGCQRCVRACPYQVIGMNRSAPH 112

Query: 64  ELW 66
             W
Sbjct: 113 RHW 115


>gi|158634528|gb|ABW76116.1| Fe-hydrogenase 1 [Trimastix pyriformis]
          Length = 439

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI
Sbjct: 115 AYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPYHAI 168



 Score = 41.5 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    +G +    I  ++CI CG C+ 
Sbjct: 148 IDPDLCVRCGACQKVCPYHAIVKLAVPCEEACPVGAIAKGPSGHAEIDWEKCIHCGQCQL 207

Query: 49  ECPVDAI 55
            CP  ++
Sbjct: 208 HCPFSSV 214


>gi|157369931|ref|YP_001477920.1| dimethylsulfoxide reductase chain B [Serratia proteamaculans 568]
 gi|157321695|gb|ABV40792.1| Dimethylsulfoxide reductase chain B [Serratia proteamaculans 568]
          Length = 205

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPTGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|39995180|ref|NP_951131.1| oxidoreductase, iron-sulfur cluster-binding subunit [Geobacter
           sulfurreducens PCA]
 gi|39981942|gb|AAR33404.1| oxidoreductase, iron-sulfur cluster-binding subunit [Geobacter
           sulfurreducens PCA]
 gi|298504185|gb|ADI82908.1| oxidoreductase, iron-sulfur cluster-binding subunit [Geobacter
           sulfurreducens KN400]
          Length = 257

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V + C  C +  CV+VCPV   Y+  + +  +    CI CG C   CP       
Sbjct: 123 AFFVPKLCNQCDNPPCVQVCPVGATYKTVDGVVLVDRSWCIGCGYCIMGCPYGVRFFH 180


>gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 595

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y +TE C  C  T C  VCPV       +    I  ++CI CG C  +C   AI  +
Sbjct: 541 YHITEQCKGC--TACARVCPVGAISGTVKALHTIDQEKCIKCGACMDKCKFAAIVRE 595


>gi|83312388|ref|YP_422652.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82947229|dbj|BAE52093.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 242

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           TYV+   C  C    CV VCPV   ++ ++    +  D C+ C  C   CP DA   + E
Sbjct: 90  TYVLPRLCNHCSDPPCVGVCPVGATFQQKDGAVMVDSDRCVGCAYCVQACPYDARFINHE 149



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           V ++ C+ C +  CV+ CP D  +                 V
Sbjct: 124 VDSDRCVGCAY--CVQACPYDARFINHETNTADKCTFCGHRV 163


>gi|294339944|emb|CAZ88307.1| putative Iron-sulfur cluster ferredoxin [Thiomonas sp. 3As]
          Length = 275

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D +
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRQEDGIVLVDSDKCIGCKYCSWACPYGAREYDED 126



 Score = 35.7 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V ++ CI CK+  C   CP       E+   +       C +C      ++I  
Sbjct: 101 VDSDKCIGCKY--CSWACPYGAREYDEDRGVM-----TKCTLCVDRIYDESIPQ 147


>gi|238761728|ref|ZP_04622703.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           kristensenii ATCC 33638]
 gi|238700242|gb|EEP92984.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           kristensenii ATCC 33638]
          Length = 204

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    C +VCP    ++ ++  + ++ D CI C  C   CP  A + D 
Sbjct: 59  AYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDE 117


>gi|2209070|dbj|BAA20528.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp.]
          Length = 647

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +VV + C  CK   C++   CP   +        + P  C  CG C   CP DA +P  E
Sbjct: 588 HVVEDKCTGCK--ICIKTYGCPAIYWDPETKKAKVDPTMCWGCGGCAQVCPFDAFEPMKE 645


>gi|89893274|ref|YP_516761.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219666548|ref|YP_002456983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89332722|dbj|BAE82317.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219536808|gb|ACL18547.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 203

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           T  C  C++  CV+VCPV   Y+ E+    I+ D CI C  C   CP +A   + 
Sbjct: 62  TVACQHCENAPCVKVCPVGATYKAEDGRVLINYDRCIGCRYCMAACPYNARVFNW 116


>gi|76666794|emb|CAJ31172.1| Hdr-like menaquinol-oxidizing enzyme, subunit A (HmeA) [uncultured
           sulfate-reducing bacterium]
          Length = 257

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C +  CV VCP    +  EG+  + +    CI C  C   CP  +   +        
Sbjct: 118 CNHCDNPPCVRVCPTQATWKREGDGIVMMDWHRCIGCRYCVAACPYGSRSFNWRDPRPHI 177

Query: 67  LKINSEYATQWPNITTK 83
             I+ +Y T+   +  K
Sbjct: 178 ADIDDDYPTRNRGVVEK 194


>gi|78043298|ref|YP_360068.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995413|gb|ABB14312.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 893

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ E C  C    CV VCP  V     G+N   I P  C  CG+C  ECP  AI  +  P
Sbjct: 820 VIEEKCAACL--TCVRVCPYSVPVVINGKNVAYIDPISCQGCGICASECPNKAIVQNNRP 877

Query: 62  GLELWLKI 69
              +  +I
Sbjct: 878 HHGVLAEI 885


>gi|323699753|ref|ZP_08111665.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323459685|gb|EGB15550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 242

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C    CVE CP    Y+ G+  + +  D CI CG C   CP +A
Sbjct: 56  ACMHCDKPSCVEACPTGATYKAGDGSVVVDHDRCIGCGGCVAACPYNA 103



 Score = 33.8 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 9/69 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGV------CEPECPVDAIK 56
           V  + CI C    CV  CP +  +   +         C D GV      C   CP++   
Sbjct: 84  VDHDRCIGC--GGCVAACPYNARFLNPHTGTADKCDYCRDAGVPGQPPACVQVCPMNCRI 141

Query: 57  PDTEPGLEL 65
                  + 
Sbjct: 142 FGNADDPQD 150


>gi|307243639|ref|ZP_07525782.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493008|gb|EFM65018.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 516

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y  T+ C  C    CVEVCP            I  D CI CG C+  CP DAI
Sbjct: 116 YKTTDICRGCLARPCVEVCPKKAVSMVNGKSFIDQDLCIKCGRCKAVCPYDAI 168



 Score = 40.4 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 23/87 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  + CI C    C  VCP D   + E                    +I  D+C+ CG
Sbjct: 146 SFIDQDLCIKC--GRCKAVCPYDAIAKLERPCARACGMDAIESDKYGRASIDYDKCVSCG 203

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINS 71
           VC   CP  AI        +++  IN 
Sbjct: 204 VCISSCPFGAIA----DKSQIFQLINE 226


>gi|315231407|ref|YP_004071843.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus
           barophilus MP]
 gi|315184435|gb|ADT84620.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus
           barophilus MP]
          Length = 616

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V+ + C+ CK    +  CP   +    N + I P  C  CG+C   CP +AIK 
Sbjct: 553 PTVIEDKCVGCKACILLTGCPALVYDPETNKVRIDPLICTGCGICNQLCPFEAIKF 608


>gi|157377341|ref|YP_001475941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319715|gb|ABV38813.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 231

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  V   C  C +  CV VCPV+  Y+ E    + I  +ECI C +C   CP  A + D 
Sbjct: 81  TLAVPNQCNQCDNPACVYVCPVEATYKREEDGIVVIDHEECIHCQLCVDACPYGARRKDE 140


>gi|317484216|ref|ZP_07943145.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924565|gb|EFV45722.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 240

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C+ C    CV+ CP    Y+ E+ +  +    CI CG C   CP  A   D
Sbjct: 56  ACMHCDEPSCVDACPTHATYKAEDGVVMVDETRCIACGSCMRACPYQARHID 107



 Score = 34.2 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 2/35 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           V    CI C    C+  CP    +       +   
Sbjct: 84  VDETRCIAC--GSCMRACPYQARHIDPARRVVDKC 116


>gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
 gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           YV+T++CI C    C + CP +    E +    I   +C+ CG C  +C   AI  +
Sbjct: 574 YVITDDCIGC--GLCKKNCPAEAINGEKKQKHVIDTTKCLKCGACMEKCKKGAIIKE 628


>gi|325957816|ref|YP_004289282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329248|gb|ADZ08310.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 368

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ E C  C    C + CPV  F   +   AI+ D+CI C  C   CP + IK +    +
Sbjct: 190 IINEGCNSC--GRCADSCPVSAFEISKAGAAINYDKCIACNNCLGACPDELIKLNWS-TM 246

Query: 64  ELWLKINSEYA 74
           E +++  +EYA
Sbjct: 247 EEFIERMTEYA 257


>gi|291535976|emb|CBL09088.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia
           intestinalis M50/1]
          Length = 482

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI  
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAH 147



 Score = 41.1 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
           +++    C  C                  C   CPV+     E  +  I  ++CI CG C
Sbjct: 123 SHIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKC 182

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 183 IHSCPFGAI 191


>gi|253581620|ref|ZP_04858845.1| hydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836690|gb|EES65225.1| hydrogenase [Fusobacterium varium ATCC 27725]
          Length = 644

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C   + +    +    C  CG C   CPV AI    
Sbjct: 217 FRITEKCIGC--TACARVCPVKCISGKIKERHILDTSRCTHCGQCVAACPVGAIFEGD 272



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL 33
            T  C  C    CV  CPV   +EG++ +
Sbjct: 249 DTSRCTHC--GQCVAACPVGAIFEGDHTM 275


>gi|212223165|ref|YP_002306401.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
 gi|212008122|gb|ACJ15504.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
          Length = 638

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 24/56 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             VV E C  CK    +  CP   +    N + I    C  CGVC   CP DAIK 
Sbjct: 576 PLVVEEKCTGCKACILLTGCPALVYDPDTNKVKIDELLCTGCGVCNQLCPFDAIKF 631


>gi|127511178|ref|YP_001092375.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636473|gb|ABO22116.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 231

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  V   C  C +  C +VCPV+  Y+   +  + I  +ECI C +C   CP  A + D 
Sbjct: 81  TLAVPNQCNQCDNPVCTQVCPVEATYKRKEDGIVVIDHEECIHCQLCVDACPYGARRKDE 140


>gi|239908372|ref|YP_002955113.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Desulfovibrio magneticus RS-1]
 gi|239798238|dbj|BAH77227.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Desulfovibrio magneticus RS-1]
          Length = 250

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C++  CV VCPV   ++ +  +  I  D CI C  C   CP  A   D
Sbjct: 84  PCMQCENPPCVAVCPVTATWKNKQGVTVIDYDRCIGCRYCLTACPYGARCSD 135


>gi|257790284|ref|YP_003180890.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830097|ref|ZP_08163554.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|257474181|gb|ACV54501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487564|gb|EGC90002.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 227

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           TY +T  C  C++ +CV+VCP    ++ E+    I   +CI C  C   CP      + E
Sbjct: 57  TYFLTVQCQHCENPECVKVCPTGASHKLEDGTVQIDKSKCIGCQFCAMSCPYSVRYLNEE 116

Query: 61  P 61
            
Sbjct: 117 E 117


>gi|225376805|ref|ZP_03754026.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM
           16841]
 gi|225211301|gb|EEG93655.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM
           16841]
          Length = 375

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE CI C    C  +C        ++   I  D+C+ CG C   CP DAI  D    +
Sbjct: 191 VATEACIGC--GACGRICAHGAPVITDHKAKIDHDKCVGCGRCLAVCPKDAISADYADSV 248

Query: 64  ELWLKINSEYA 74
            +     +EY+
Sbjct: 249 AMLNYKMAEYS 259


>gi|167630112|ref|YP_001680611.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
 gi|167592852|gb|ABZ84600.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
          Length = 373

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C +C    C+  CPVD    GE    I  + CI CG C   CP  AI  + +    
Sbjct: 189 VNDKCKVC--GKCLRWCPVDAISLGE-RAVIAGERCIGCGECTVTCPHKAIAVNWKTDAG 245

Query: 65  LWLKINSEYA 74
           L  +  +EYA
Sbjct: 246 LLQEKMAEYA 255


>gi|255261730|ref|ZP_05341072.1| 4Fe-4S binding domain protein [Thalassiobium sp. R2A62]
 gi|255104065|gb|EET46739.1| 4Fe-4S binding domain protein [Thalassiobium sp. R2A62]
          Length = 252

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D E G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQEEGVMK 140


>gi|78355728|ref|YP_387177.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218133|gb|ABB37482.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 285

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
            C+ C+   CVE CP    ++      + I P  CI CG C P CP  A
Sbjct: 60  ACMHCESPTCVEACPTGATWKDRETGIVEIDPALCIGCGNCIPACPYGA 108


>gi|238920366|ref|YP_002933881.1| dimethylsulfoxide reductase, chain B, [Edwardsiella ictaluri
           93-146]
 gi|238869935|gb|ACR69646.1| dimethylsulfoxide reductase, chain B, putative [Edwardsiella
           ictaluri 93-146]
          Length = 205

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++ E+  + +    CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQY 116


>gi|332286205|ref|YP_004418116.1| ferrodoxin, 4Fe-4S [Pusillimonas sp. T7-7]
 gi|330430158|gb|AEC21492.1| ferrodoxin, 4Fe-4S [Pusillimonas sp. T7-7]
          Length = 74

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEYATQWPNITTKKESLPSA 90
           + I P  C++C  C   CPV AI PD E   +   +  +N + +  +P  +     LP A
Sbjct: 1   MVIDPAVCVNCTTCVIVCPVGAIVPDYELQADQHSFKALNRDLSKVYPRASGPVPPLPDA 60

Query: 91  AKMDGVKQKYEKYF 104
            +      K  K  
Sbjct: 61  DEHAFETNKRSKLL 74


>gi|121535868|ref|ZP_01667666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305533|gb|EAX46477.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 235

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C++  CV VCPV   Y+G++  + I   +CI C  C   CP  A   D
Sbjct: 80  PCFQCENPPCVPVCPVKATYKGDDGIVVIDYTKCIGCRSCVAACPYGARTFD 131


>gi|78221547|ref|YP_383294.1| twin-arginine translocation pathway signal [Geobacter
           metallireducens GS-15]
 gi|78192802|gb|ABB30569.1| tetrathionate reductase beta subunit [Geobacter metallireducens
           GS-15]
          Length = 260

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            + V + C  C +  CV+VCPV   Y+  + +  +    CI C  C   CP 
Sbjct: 126 AFFVPKLCNQCDNPACVQVCPVGATYQTPDGVVLVDRKHCIGCAYCIMACPY 177


>gi|317500246|ref|ZP_07958476.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087521|ref|ZP_08336454.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898372|gb|EFV20413.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404066|gb|EGG83615.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 503

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNGRSYIDQEKCIKCGKCKSVCPYDAIAKKERP 175



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 24/98 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     I  ++C+ CG
Sbjct: 147 SYIDQEKCIKC--GKCKSVCPYDAIAKKERPCQKACGVNAIKSDKMGRAYIDNEKCVSCG 204

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
           +C   CP  AI        +++ ++    +     I  
Sbjct: 205 MCMVSCPFGAI----SDKSQIF-QLARALSEGENVIAE 237


>gi|225849205|ref|YP_002729369.1| sulfur reductase FeS subunit [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643270|gb|ACN98320.1| sulfur reductase FeS subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 211

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  C++  C  +CPV   +   N +  +  + CI C  C   CP +AI  D
Sbjct: 51  HFVPLRCNHCENAPCERICPVSALHYLPNGIVNVDHNRCIGCASCMMACPYNAIYID 107


>gi|297584891|ref|YP_003700671.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297143348|gb|ADI00106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 230

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  CV  CPV   Y+ E+ L     D CI C  C   CP   I  + +   + W 
Sbjct: 60  CNHCDHAPCVMACPVTAMYKDEDGLTLHDADRCIGCKACMTACPYGVISFNKKDPHQYWN 119

Query: 68  KINS 71
           + N+
Sbjct: 120 ENNA 123


>gi|154492142|ref|ZP_02031768.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC
          43184]
 gi|154087367|gb|EDN86412.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC
          43184]
          Length = 458

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + C+ C H  C+  CP       E   +I    C+DCG C   CP +AI  + +   
Sbjct: 12 IDNDRCVGCTH--CMTKCPTGAIRIREGKASIRKGWCVDCGECLKACPTEAIYVEQDDFQ 69

Query: 64 ELW 66
          +++
Sbjct: 70 KIF 72


>gi|124266052|ref|YP_001020056.1| iron-sulfur cluster protein [Methylibium petroleiphilum PM1]
 gi|124258827|gb|ABM93821.1| iron-sulfur cluster protein [Methylibium petroleiphilum PM1]
          Length = 262

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D E
Sbjct: 111 SCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCSWACPYGARELDEE 165


>gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
          Length = 592

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           TYV+T+ C  C  T C  VC V       +    I P++C+ CG C   C   AI
Sbjct: 537 TYVITDACRGC--TACTRVCAVKAIEGNIKEKHFIDPEKCVRCGACISACRFGAI 589


>gi|257469186|ref|ZP_05633280.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
 gi|317063434|ref|ZP_07927919.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313689110|gb|EFS25945.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 644

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C   + +    +    C  CG C   CPV AI    
Sbjct: 217 FRITEKCIGC--TACARVCPVKCISGKIKERHILDTSRCTHCGQCVAACPVGAIFEGD 272



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL 33
            T  C  C    CV  CPV   +EG++ +
Sbjct: 249 DTSRCTHC--GQCVAACPVGAIFEGDHTM 275


>gi|157165183|ref|YP_001467594.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           concisus 13826]
 gi|157101508|gb|EAT98488.2| selenate reductase subunit beta (Selenate reductaseiron-sulfur
           subunit) [Campylobacter concisus 13826]
          Length = 245

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C    C++VCP    Y+  N +  I   ECI C +C   CP  A
Sbjct: 94  CNHCNKPACIDVCPTGASYQRSNGIVKIDTKECIGCALCVEACPYHA 140



 Score = 33.8 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           + T+ CI C    CVE CP    Y   +          D  +
Sbjct: 121 IDTKECIGC--ALCVEACPYHARYLSLHTYKADKCTFCDHRL 160


>gi|153814717|ref|ZP_01967385.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756]
 gi|145847748|gb|EDK24666.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756]
          Length = 503

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNGRSYIDQEKCIKCGKCKSVCPYDAIAKKERP 175



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 24/98 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     I  ++C+ CG
Sbjct: 147 SYIDQEKCIKC--GKCKSVCPYDAIAKKERPCQKACGVNAIKSDKMGRAYIDNEKCVSCG 204

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
           +C   CP  AI        +++ ++    +     I  
Sbjct: 205 MCMVSCPFGAI----SDKSQIF-QLARALSEGENVIAE 237


>gi|269139538|ref|YP_003296239.1| anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           EIB202]
 gi|267985199|gb|ACY85028.1| anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           EIB202]
 gi|304559427|gb|ADM42091.1| Anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           FL6-60]
          Length = 205

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++ E+  + +    CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQY 116


>gi|126465606|ref|YP_001040715.1| cobyrinic acid a,c-diamide synthase [Staphylothermus marinus F1]
 gi|126014429|gb|ABN69807.1| Cobyrinic acid a,c-diamide synthase [Staphylothermus marinus F1]
          Length = 329

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V E CI C   +C+  CP +      N   I+   C  C  C   CP  AI
Sbjct: 72  IVQEKCINC--GECMNACPFNAVELINNKYVINKWICEGCYTCSFVCPTKAI 121


>gi|315651089|ref|ZP_07904123.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315486679|gb|EFU77027.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 207

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++CI C    CVEVCP DC  +      I    C+ CG C   C V A+
Sbjct: 154 YFITDDCIGC--GRCVEVCPQDCINQENIPYVIENKHCLHCGNCLTVCSVGAV 204


>gi|157369310|ref|YP_001477299.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Serratia proteamaculans 568]
 gi|157321074|gb|ABV40171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 244

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++  +  + +    C+ C  C   CP +A   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQRQDGIVVVDNTRCVGCAYCVQACPYEARFINHE 152


>gi|220903726|ref|YP_002479038.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868025|gb|ACL48360.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 260

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C +  CV VCP    Y+ ++ +  +    CI C  C   CP  A   + +   +
Sbjct: 121 CNHCTNPPCVRVCPTQATYKMDDGIVAMDYHRCIGCRFCMAGCPYGARSFNFKDPRK 177


>gi|11498110|ref|NP_069335.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|32699494|sp|O29751|HMEA_ARCFU RecName: Full=Hdr-like menaquinol oxidoreductase iron-sulfur
           subunit 1; Short=Hme subunit A; Flags: Precursor
 gi|2650126|gb|AAB90738.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 269

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C+H  CV+VC     ++  + +  I    CI C  C   CP  A   +   
Sbjct: 112 YYIPLLCNHCEHPPCVQVCLTKASFKRPDGIVEIDMHRCIGCRYCMIACPYGARCFNFID 171

Query: 62  GLELWLKIN 70
             E   ++N
Sbjct: 172 PREGLKEVN 180


>gi|332097983|gb|EGJ02956.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 155-74]
          Length = 184

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|291538469|emb|CBL11580.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia
           intestinalis XB6B4]
          Length = 482

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI  
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAH 147



 Score = 40.7 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
           +++    C  C                  C   CPV+     E  +  I  ++CI CG C
Sbjct: 123 SHIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKC 182

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 183 IHSCPFGAI 191


>gi|257791333|ref|YP_003181939.1| thiamine pyrophosphate protein domain-containing protein
           TPP-binding [Eggerthella lenta DSM 2243]
 gi|257475230|gb|ACV55550.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Eggerthella lenta DSM 2243]
          Length = 583

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT+ C  C    C  + CP        +   I   +CI CG C   C  +AI
Sbjct: 520 AYAVTDACTAC--GVCSTLGCPAIAKDPANDHALIDAAQCIGCGQCAQYCAWNAI 572


>gi|332758139|gb|EGJ88464.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2747-71]
          Length = 205

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y +  +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLAISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|317490471|ref|ZP_07948952.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325831351|ref|ZP_08164605.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
 gi|316910409|gb|EFV32037.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325486605|gb|EGC89053.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
          Length = 583

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT+ C  C    C  + CP        +   I   +CI CG C   C  +AI
Sbjct: 520 AYAVTDACTAC--GVCSTLGCPAIAKDPANDHALIDAAQCIGCGQCAQYCAWNAI 572


>gi|73670092|ref|YP_306107.1| sulfite reductase subunit beta [Methanosarcina barkeri str. Fusaro]
 gi|72397254|gb|AAZ71527.1| sulfite reductase, beta subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 285

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  +V ENC+ CK   C + C V      E+  +I  ++CI CG C   C  DA+K +
Sbjct: 160 MPKIVEENCVGCKL--CEKACKVGAIKVLEDKASIDTEKCILCGACIAACRKDALKAE 215


>gi|332160309|ref|YP_004296886.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664539|gb|ADZ41183.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859581|emb|CBX69922.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica W22703]
          Length = 204

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    C +VCP    ++ ++  + +  D CI C  C   CP  A + D 
Sbjct: 59  AYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVSEDICIGCRYCHMACPYGAPQYDE 117


>gi|188495052|ref|ZP_03002322.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|188490251|gb|EDU65354.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
          Length = 205

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYSLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|317497055|ref|ZP_07955382.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895600|gb|EFV17755.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 481

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +YVVT NC  C   DC++ C       G     I P +C +CG+C   CP +AI   + P
Sbjct: 92  SYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRP 151



 Score = 41.9 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C  C                  C + CPVD     E  +  I  ++CI CG C  
Sbjct: 125 IDPQKCKECGMCAKACPYNAIAHVSRPCKDSCPVDAISYDEYGVSVIDEEKCIRCGQCAA 184

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 185 KCPFGAI 191


>gi|146311076|ref|YP_001176150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Enterobacter sp. 638]
 gi|145317952|gb|ABP60099.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Enterobacter
           sp. 638]
          Length = 205

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ ++  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKRDDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|310826460|ref|YP_003958817.1| Fe-S cluster domain protein [Eubacterium limosum KIST612]
 gi|308738194|gb|ADO35854.1| Fe-S cluster domain protein [Eubacterium limosum KIST612]
          Length = 452

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          Y+  + C+ C  T C+  CP       E    I   +CIDCG C   CP  A    T+P
Sbjct: 9  YLDKDKCLGC--TTCLRSCPTGAIRVREGKAKIIESKCIDCGECIRVCPHHAKMAKTDP 65


>gi|149909449|ref|ZP_01898104.1| oxidoreductase [Moritella sp. PE36]
 gi|149807559|gb|EDM67508.1| oxidoreductase [Moritella sp. PE36]
          Length = 633

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C    C++ CP   + +  E    +  PD C  CG C   CP +A + D
Sbjct: 141 ISMACNHCDDPVCLKGCPTKAYTKHVEYGAVLQDPDTCFGCGYCTWVCPYNAPQLD 196


>gi|24112977|ref|NP_707487.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|110805564|ref|YP_689084.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|24051935|gb|AAN43194.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|110615112|gb|ABF03779.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
          Length = 205

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|78222278|ref|YP_384025.1| formate dehydrogenase beta subunit [Geobacter metallireducens
           GS-15]
 gi|78193533|gb|ABB31300.1| formate dehydrogenase beta subunit [Geobacter metallireducens
           GS-15]
          Length = 277

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
            E C+ C    C  VCPV  F++      I +  +CI C  C   CP    K + 
Sbjct: 81  KEMCMHCNDPACASVCPVGAFHKTPEGPVIYNAKKCIGCRFCMVACPFGVPKYEW 135


>gi|317489682|ref|ZP_07948186.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911276|gb|EFV32881.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 237

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           +   C+ C++  CV VCPV   Y GE+  + I  D CI C  C   CP  A   D 
Sbjct: 81  IPRPCMQCENPACVSVCPVSATYRGEDGIVVIDADRCIGCKYCIAACPYGARSADE 136


>gi|148262936|ref|YP_001229642.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396436|gb|ABQ25069.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 261

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V + C  C +  CV+VCPV   Y+ E+ +  +    CI CG C   CP       
Sbjct: 127 AFFVPKLCNQCDNPPCVQVCPVGATYQTEDGVVLVDRSWCIGCGYCIMGCPYGVRFFH 184


>gi|167767746|ref|ZP_02439799.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1]
 gi|167710485|gb|EDS21064.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1]
 gi|291558899|emb|CBL37699.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SSC/2]
          Length = 481

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +YVVT NC  C   DC++ C       G     I P +C +CG+C   CP +AI   + P
Sbjct: 92  SYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRP 151



 Score = 41.9 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C  C                  C + CPVD     E  +  I  ++CI CG C  
Sbjct: 125 IDPQKCKECGMCAKACPYNAIAHVSRPCKDSCPVDAISYDEYGVSVIDEEKCIRCGQCAA 184

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 185 KCPFGAI 191


>gi|89519313|gb|ABD75790.1| iron-sulfur cluster-binding protein [uncultured bacterium]
          Length = 380

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV+E CI C    C + CPV      E    I    CI C  C   CP DAI
Sbjct: 318 VVSEKCIGC--GFCRDACPVQVISMVEKHAEIKQRHCIHCYCCHEMCPHDAI 367


>gi|288931033|ref|YP_003435093.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893281|gb|ADC64818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 252

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +Y V + C  CK   CV+VCPV   Y+  + +  +    C+ C  C   CP  A
Sbjct: 113 SYFVPKLCNQCKDPPCVQVCPVGATYKTPDGVILVDEKYCLGCRYCIQACPYGA 166


>gi|117920783|ref|YP_869975.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|146294906|ref|YP_001185330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|33286385|gb|AAQ01673.1| ArrB [Shewanella sp. ANA-3]
 gi|117613115|gb|ABK48569.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
 gi|145566596|gb|ABP77531.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 234

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C    CV+VCP    ++ +  L + + DECI C  C   CP   I  +     
Sbjct: 53  IPTLCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISFNAATPH 112

Query: 64  ELW 66
             W
Sbjct: 113 RRW 115


>gi|284007051|emb|CBA72326.1| glutamate synthase (NADPH) small chain [Arsenophonus nasoniae]
          Length = 603

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CPVD        + +  + CI C  C   CP  AI  
Sbjct: 56  CRHCNNAPCITSCPVDALRFVSATVQLDQNRCIGCKSCIIACPFGAIDM 104


>gi|240103186|ref|YP_002959495.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
 gi|239910740|gb|ACS33631.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
          Length = 658

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V+ + C  CK    +  CP   +    N + I    C  CGVC   CP DAIK 
Sbjct: 595 PVVIEDKCTGCKACILLTGCPALVYDPETNKVRIDSLLCTGCGVCNQTCPFDAIKF 650


>gi|227328564|ref|ZP_03832588.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 674

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P     + 
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTSPVDNSAIA 115

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 116 HKCDLCADRP 125



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V E CI CK   CV  CP        + +  +      C +C       A 
Sbjct: 83  VQEKCIGCK--SCVLACPFGAMSMVTSPVD-NSAIAHKCDLCADRPEGQAC 130


>gi|331091265|ref|ZP_08340106.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404712|gb|EGG84251.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 502

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCPV      +    I   +CI CG C+  CP DAI     P
Sbjct: 116 YEVSNMCKGCVAHPCKEVCPVGAISMKDGHSFIDQTKCIKCGKCKANCPYDAIAKKERP 174



 Score = 38.4 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
           +++    CI C                  C + C V+     +     I  D+C+ CG+C
Sbjct: 146 SFIDQTKCIKCGKCKANCPYDAIAKKERPCQKSCGVNAIVSDKYGRAKIDNDKCVSCGMC 205

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 206 MVSCPFGAI 214


>gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           YV+   CI C  T C  +CP  C          I  ++CI CG C   C   AI  D
Sbjct: 560 YVINNKCIGC--TLCARICPESCITGSPKQRHYIDAEKCIKCGSCYEACKFHAINRD 614


>gi|311280101|ref|YP_003942332.1| glutamate synthase, small subunit [Enterobacter cloacae SCF1]
 gi|308749296|gb|ADO49048.1| glutamate synthase, small subunit [Enterobacter cloacae SCF1]
          Length = 646

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  CP       +N + ++   CI C  C   CP  AI+ 
Sbjct: 56  CRHCNDAPCVASCPTHALRFDDNSVQLNQTLCIGCKNCAIACPFGAIEM 104


>gi|121998740|ref|YP_001003527.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121590145|gb|ABM62725.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 245

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    CV VCP    +   + +  +    CI C  C   CP  A     EP  E
Sbjct: 107 CQHCAEPPCVSVCPTRASFRRADGIVLVDKHRCIGCRYCMVACPFHARAFVDEPVAE 163


>gi|298346148|ref|YP_003718835.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii ATCC 43063]
 gi|304390092|ref|ZP_07372046.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315654727|ref|ZP_07907633.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii ATCC 51333]
 gi|298236209|gb|ADI67341.1| anaerobic dimethyl sulfoxide reductase, chain B [Mobiluncus
           curtisii ATCC 43063]
 gi|304326574|gb|EFL93818.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315491191|gb|EFU80810.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii ATCC 51333]
          Length = 212

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C++  C+EVCP       E+  + +   +C+ C  C+  CP  A + + E
Sbjct: 67  AYYVSISCNHCEYPVCMEVCPTTAMSRREDGTVYVDESKCVGCRYCQWACPYGAPQLNPE 126

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            G      +  +Y ++  +          A +   + +  +K+
Sbjct: 127 TGHMSKCDLCYDYRSEGKDPACVAACPSRALEWGPIDELRKKH 169


>gi|325833428|ref|ZP_08165877.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
 gi|325485352|gb|EGC87821.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
          Length = 341

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           V   C+ C+   CV+ CP       ++ +  I  ++CI CG+C   CP  A
Sbjct: 179 VPNACVQCEKPACVDACPTGASVRRDDGITVIDYEKCIACGLCLAACPYGA 229


>gi|237730860|ref|ZP_04561341.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
 gi|226906399|gb|EEH92317.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
          Length = 205

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAD 119


>gi|146284007|ref|YP_001174160.1| tetrathionate reductase subunit B [Pseudomonas stutzeri A1501]
 gi|145572212|gb|ABP81318.1| tetrathionate reductase subunit B [Pseudomonas stutzeri A1501]
          Length = 254

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV VCPV   ++  + +  +  + C+ CG C   CP DA   + E
Sbjct: 110 CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHE 162



 Score = 33.8 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           V  E C+ C +  CV+ CP D  +              +  +
Sbjct: 137 VDNERCVGCGY--CVQACPYDARFINHETQTADKCTFCEHRL 176


>gi|89053933|ref|YP_509384.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88863482|gb|ABD54359.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp. CCS1]
          Length = 254

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D + G+  
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGARELDQDEGVMK 146


>gi|319785595|ref|YP_004145071.1| DMSO reductase chain B [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171483|gb|ADV15021.1| DMSO reductase chain B [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 244

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y+   +  + I  D+CI C +C   CP  A + DT+
Sbjct: 80  SCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTD 134


>gi|14590966|ref|NP_143041.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           horikoshii OT3]
 gi|3257555|dbj|BAA30238.1| 618aa long hypothetical indolepyruvate ferredoxin oxidoreductase
           alpha subunit [Pyrococcus horikoshii OT3]
          Length = 618

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ + C  CK    +  CP   +      + I    C  CG+C   CP DAIK   E
Sbjct: 560 VIEDKCTGCKACILLSGCPALIYDPETRKVRIDELICTGCGICNQLCPFDAIKFREE 616


>gi|85706216|ref|ZP_01037311.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85669380|gb|EAQ24246.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 260

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDAAEGVMK 146


>gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 594

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +T+ CI C  T C  VCP+D      ++   I+ + CI CG C   C   AI
Sbjct: 539 TYSITDKCIGC--TACARVCPIDAITGTVKHRHEINNEICIKCGACYETCKFGAI 591


>gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
 gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
          Length = 626

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y +T+ CI C  T C + CPV C   E +    I   +CI CG CE  CPV A+
Sbjct: 571 SYEITDKCIGC--TKCAKNCPVSCIEGEVKKQHVIDKSQCIKCGNCETVCPVHAV 623


>gi|303258350|ref|ZP_07344353.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302858796|gb|EFL81884.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 213

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C++  C++VCPV   Y G +    I   +CI C  C   CP  A K         +
Sbjct: 55  SCMHCENPACMKVCPVKAVYFGPHGEVLIDQKKCIGCKGCLAACPYSAPKFSDPNKQSYF 114

Query: 67  LKI 69
             +
Sbjct: 115 GDL 117


>gi|254458861|ref|ZP_05072285.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207084627|gb|EDZ61915.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 212

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C++  C  +CPV   +  +N +  I  + CI C  C   CP  AI  D
Sbjct: 56  RCNHCQNAPCERICPVSALHYLDNGIVNIDKERCIGCAGCVMACPYGAIYID 107



 Score = 36.1 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDA-I 55
           +  E CI C    CV  CP    Y                         C   CPV A I
Sbjct: 84  IDKERCIGC--AGCVMACPYGAIYIDPQTQTADKCTYCAHRVASSMMPACVVACPVQANI 141

Query: 56  KPDTEPG---LELWLKINS 71
             D +     +  ++++N 
Sbjct: 142 FGDLDDPTSNISKYIQVNQ 160


>gi|317154870|ref|YP_004122918.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316945121|gb|ADU64172.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 254

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
            C+ C +  CV  CP    Y+      + I    CI CG C P CP  A
Sbjct: 61  ACMHCDNPTCVAACPTGATYKDPETGEVVIDDGLCIGCGNCIPACPYHA 109


>gi|225374841|ref|ZP_03752062.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM
           16841]
 gi|225213302|gb|EEG95656.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM
           16841]
          Length = 468

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI  
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEPGRLRSHIDPQKCKECGKCAQACPYNAIAH 147



 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
           +++  + C  C                  C   CPV+     E  +  I   +CI CG C
Sbjct: 123 SHIDPQKCKECGKCAQACPYNAIAHLKRPCKFSCPVNAITYDEYGISVIDEKKCIRCGKC 182

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 183 IHSCPFGAI 191


>gi|226328967|ref|ZP_03804485.1| hypothetical protein PROPEN_02869 [Proteus penneri ATCC 35198]
 gi|225202153|gb|EEG84507.1| hypothetical protein PROPEN_02869 [Proteus penneri ATCC 35198]
          Length = 189

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            +T +C  C    C++VCP D + + E+ + +   D+CI C +C   CP +A   D
Sbjct: 55  FITMSCNHCDDPQCLKVCPADTYTKREDGIVVQDHDKCIGCQMCIMACPYNAPVYD 110


>gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
 gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + +NCI C    C + CP D    E +    I   +C+ CG C  +C   AI
Sbjct: 574 YFINDNCIGC--GLCKKNCPADAITGEKKEKHVIDTTKCLKCGACMEKCKKHAI 625


>gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
 gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
          Length = 644

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   CPVDC     +    I  + C  CG C   CPVDAI
Sbjct: 218 ITKKCIGC--GACKRACPVDCINGELKKKHEIDYNRCTHCGACVSACPVDAI 267


>gi|239618161|ref|YP_002941483.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1]
 gi|239506992|gb|ACR80479.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1]
          Length = 478

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y +T+ C  C    C+  CP +     +    I  ++C+ CG+C   CP  AI
Sbjct: 117 SYHITDMCRNCSAKYCINSCPRNAIPIVDGKPKIDSEKCVGCGLCAKNCPYGAI 170



 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEP 48
           + +E C+ C                  CV  C V   Y  EN    I  ++C+ CG C  
Sbjct: 150 IDSEKCVGCGLCAKNCPYGAIIKIQRPCVSACAVGATYSDENGFVLIDDEKCVQCGECAV 209

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 210 ACPFGAI 216


>gi|13474673|ref|NP_106242.1| DMSO reductase chain B [Mesorhizobium loti MAFF303099]
 gi|14025428|dbj|BAB52028.1| DMSO reductase chain B [Mesorhizobium loti MAFF303099]
          Length = 244

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y+   +  + I  D+CI C +C   CP  A + DT+
Sbjct: 80  SCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTD 134


>gi|308271190|emb|CBX27799.1| hypothetical protein N47_C18570 [uncultured Desulfobacterium sp.]
          Length = 368

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C   DC+  C             I   +CI CG C   C  +AI+      + ++L
Sbjct: 194 KCIGC--GDCISHCSQQAISLVNEKAVIDSTKCIGCGECILICVNEAIQIKWNQAIPVFL 251

Query: 68  KINSE 72
           +   E
Sbjct: 252 EKMVE 256


>gi|33595708|ref|NP_883351.1| tetrathionate reductase subunit B [Bordetella parapertussis 12822]
 gi|33565787|emb|CAE36331.1| tetrathionate reductase subunit B [Bordetella parapertussis]
          Length = 257

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+ +  +  + C+ CG C   CP DA   + E
Sbjct: 113 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFINHE 165


>gi|260588646|ref|ZP_05854559.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM
           20583]
 gi|331082003|ref|ZP_08331131.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541121|gb|EEX21690.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM
           20583]
 gi|330405598|gb|EGG85128.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 501

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C E+CP       +    I  ++CI CG C+  CP DAI     P
Sbjct: 115 YEVSNMCRGCVAHPCKEICPKGAISIIKGKSVIDQEKCIKCGKCKSVCPYDAIAKKERP 173



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEP 48
           +  E CI C                  C   C V+     E     I+ ++C+ CG+C  
Sbjct: 147 IDQEKCIKCGKCKSVCPYDAIAKKERPCARACGVNAIESDEMGRATINNEKCVSCGMCMV 206

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 207 SCPFGAI 213


>gi|218262081|ref|ZP_03476678.1| hypothetical protein PRABACTJOHN_02350 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223610|gb|EEC96260.1| hypothetical protein PRABACTJOHN_02350 [Parabacteroides johnsonii
          DSM 18315]
          Length = 458

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + C+ C H  C+  CP       E   +I    C+DCG C   CP +AI  + +   
Sbjct: 12 IDNDRCVGCTH--CMTKCPTGAIRIREGKASIRKGWCVDCGECLKACPAEAIYVEQDDFQ 69

Query: 64 ELW 66
          +++
Sbjct: 70 KIF 72


>gi|187733724|ref|YP_001880344.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shigella
          boydii CDC 3083-94]
 gi|187430716|gb|ACD09990.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shigella
          boydii CDC 3083-94]
          Length = 148

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 3  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 62


>gi|160915963|ref|ZP_02078171.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991]
 gi|158432439|gb|EDP10728.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991]
          Length = 482

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+NC  C    CV  C  D  + G     I  D+C +CG C+  CP +AI
Sbjct: 100 VTDNCRKCMAKACVASCKFDAIHIGNERAYIDYDKCKECGACKNACPFNAI 150



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            Y+  + C  C                  C   CPVD    GEN    I  ++CI+CG C
Sbjct: 128 AYIDYDKCKECGACKNACPFNAIVETPRPCKLSCPVDAITIGENKLAYIDEEKCINCGAC 187

Query: 47  EPECPVDAI 55
           + +CP  AI
Sbjct: 188 QAKCPFGAI 196



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
            Y+  E CI C    C   CP     +    + +  +      +
Sbjct: 174 AYIDEEKCINC--GACQAKCPFGAIEDISWMVNVIEELNKGTKM 215


>gi|325972699|ref|YP_004248890.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy]
 gi|324027937|gb|ADY14696.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy]
          Length = 486

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y++++ C  C    C+  CP DC         I    CI CG C+  CP  A+     P 
Sbjct: 113 YLISDACRGCFARPCLANCPKDCITFSGGQAHIDESRCIRCGKCKEVCPFHAVVHIPVPC 172

Query: 63  LEL 65
            E 
Sbjct: 173 EEA 175



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
            ++    CI C                  C E CPV+   +       I    CI CG C
Sbjct: 143 AHIDESRCIRCGKCKEVCPFHAVVHIPVPCEEACPVNAVKKNAEGYVEIDYKLCISCGRC 202

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 203 AMSCPFGAI 211


>gi|301064419|ref|ZP_07204844.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441501|gb|EFK05841.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 369

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C   DCV  C        E    I+ ++C+ CG C   CP +AI       + L+ 
Sbjct: 195 KCVGC--GDCVRHCAGSAISLKEKKAFINTEKCVGCGECILICPNEAIDVRWSRDIPLFQ 252

Query: 68  KINSEYA 74
           K  +EYA
Sbjct: 253 KKMAEYA 259



 Score = 33.8 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF 32
            ++ TE C+ C   +C+ +CP +      + 
Sbjct: 218 AFINTEKCVGC--GECILICPNEAIDVRWSR 246


>gi|313681768|ref|YP_004059506.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154628|gb|ADR33306.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
           kujiense DSM 16994]
          Length = 211

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C +  C  +CPV   +  EN +  I  + CI C  C   CP  AI  D
Sbjct: 56  RCNHCANAPCERICPVSALHYIENGIVNIDKERCIGCAGCVMACPYGAIYID 107



 Score = 34.6 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 10/68 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDA-I 55
           +  E CI C    CV  CP    Y                 V       C   CPV+A I
Sbjct: 84  IDKERCIGC--AGCVMACPYGAIYIDPQTQTADKCTYCAHRVASAMMPSCVVACPVEANI 141

Query: 56  KPDTEPGL 63
             D +  +
Sbjct: 142 FGDLDDPM 149


>gi|298675341|ref|YP_003727091.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium
           evestigatum Z-7303]
 gi|298288329|gb|ADI74295.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium
           evestigatum Z-7303]
          Length = 789

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V T+ C  C    C +VC         +   +    C  CG C   CP DAI    + 
Sbjct: 573 AFVDTDKCTGC--GICQDVCKFGKIKLYNHKAEVDELSCHGCGSCSAACPEDAIYMRNQT 630

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 631 DAQIHSQIEAAL 642



 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 19/82 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           YV  + C  C   +C  VCPV+     +  +                   I+ + C+ CG
Sbjct: 238 YVSEDKCKGCIE-ECSSVCPVEISNPFDYGIGKIKAISMPFPQAVPQCAYINDEYCVGCG 296

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C   CP DA+  + +     +
Sbjct: 297 LCRQVCPADAVDYEQKEEEFSF 318


>gi|83590477|ref|YP_430486.1| aldo/keto reductase [Moorella thermoacetica ATCC 39073]
 gi|83573391|gb|ABC19943.1| Aldo/keto reductase [Moorella thermoacetica ATCC 39073]
          Length = 315

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E C  C   +CV  CP       E    + P+ CI CG C   C    I
Sbjct: 264 IEEWCQGC--GNCVRRCPQGALEVIEGRAVVDPERCILCGYCAGACRDFCI 312


>gi|332981894|ref|YP_004463335.1| electron transfer flavoprotein subunit alpha [Mahella
          australiensis 50-1 BON]
 gi|332699572|gb|AEE96513.1| Electron transfer flavoprotein alpha subunit [Mahella
          australiensis 50-1 BON]
          Length = 397

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          ++ ENC  C    CV  CP        +   I  D C  CG C   C  DAI    E
Sbjct: 5  IIEENCTGC--AVCVRACPFGAIKMENDKAVI-LDNCTLCGSCADACKFDAIDFQAE 58


>gi|222625883|gb|EEE60015.1| hypothetical protein OsJ_12764 [Oryza sativa Japonica Group]
          Length = 815

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 713 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 770

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 771 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 803


>gi|294636444|ref|ZP_06714823.1| formate-dependent nitrite reductase, NrfC protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090296|gb|EFE22857.1| formate-dependent nitrite reductase, NrfC protein [Edwardsiella
           tarda ATCC 23685]
          Length = 255

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C+ VCPV   Y+ E+ +  +    C+ C  C   CP DA   + E
Sbjct: 109 CNHCEAPPCIPVCPVQATYQREDGIVMVDNTRCVGCAYCVQACPYDARFINHE 161



 Score = 33.4 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 13/90 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDA-I 55
           V    C+ C +  CV+ CP D  +     L           +       C   C   A I
Sbjct: 136 VDNTRCVGCAY--CVQACPYDARFINHETLTADKCTFCAHRLEAGLLPACVDSCVGGARI 193

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKE 85
             D          ++   A     I   K 
Sbjct: 194 IGDLHDPQST---LSRLLAAHSGEIYQLKP 220


>gi|332088844|gb|EGI93956.1| dimethylsulfoxide reductase, chain B [Shigella boydii 5216-82]
          Length = 205

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|330999867|ref|ZP_08323568.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329573552|gb|EGG55154.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 222

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C++  C++VCPV   Y G +    I   +CI C  C   CP  A K         +
Sbjct: 64  SCMHCENPACMKVCPVKAVYFGPHGEVLIDQKKCIGCKGCLAACPYSAPKFSDPNKQSYF 123

Query: 67  LKI 69
             +
Sbjct: 124 GDL 126


>gi|218133263|ref|ZP_03462067.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992136|gb|EEC58140.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC
           43243]
          Length = 483

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+NC LC    C + C       G +   I P +C +CG C   CP +AI
Sbjct: 95  YTVTDNCRLCMMKACKQACKFGAVSMGRDRAYIDPQKCRECGQCAKACPYNAI 147



 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+  + C  C                  C++ CPV      E  +  I   +CI+CG C
Sbjct: 125 AYIDPQKCRECGQCAKACPYNAIADLIRPCMKTCPVGAIEMDEYGVSKIDESKCIECGKC 184

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 185 IHSCPFGAI 193


>gi|212709896|ref|ZP_03318024.1| hypothetical protein PROVALCAL_00945 [Providencia alcalifaciens DSM
           30120]
 gi|212687707|gb|EEB47235.1| hypothetical protein PROVALCAL_00945 [Providencia alcalifaciens DSM
           30120]
          Length = 252

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   ++ E+  + I  + C+ C  C   CP DA
Sbjct: 107 CNHCDNPPCVPVCPVQATFQREDGIVVIDNERCVGCAYCVQACPYDA 153


>gi|145591167|ref|YP_001153169.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282935|gb|ABP50517.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 188

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C++  CV VCP    Y+  + L  I P+ CI C  C   CP +A   D 
Sbjct: 63  CQHCENAPCVIVCPTGASYKDVDGLVKIKPELCIGCKYCMVACPYEARWLDE 114


>gi|57641578|ref|YP_184056.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
 gi|57159902|dbj|BAD85832.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
          Length = 637

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V+ + C  CK    +  CP   +      + I    C  CGVC   CP DAIK 
Sbjct: 574 PVVIEDKCTGCKACILLTGCPALVYDPETKKVRIDELLCTGCGVCNQTCPFDAIKF 629


>gi|193083887|gb|ACF09566.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote KM3-72-G3]
          Length = 490

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C+   C  +CP    +  E+ +     D CI C  C   CP DA+  D
Sbjct: 77  RCNHCEDAPCTTICPTTALFTREDGIVDFDDDRCIGCKSCMQACPYDALYID 128



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 20/116 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIKPDT 59
           + CI CK   C++ CP D  Y   N             +       C   CPV+AI    
Sbjct: 108 DRCIGCK--SCMQACPYDALYIDPNKGTAAKCNYCAHRIEHSYEPSCVVVCPVEAIISGD 165

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAK-----MDGVKQKYEKYFSPNPGG 110
                  +     Y  +   I  K     S AK     ++  +   + + +   G 
Sbjct: 166 LDDPNSSISG---YLNEHETIVRK---PESGAKPNVFYVETSEDSLDPHATERSGE 215


>gi|156974867|ref|YP_001445774.1| hypothetical protein VIBHAR_02586 [Vibrio harveyi ATCC BAA-1116]
 gi|156526461|gb|ABU71547.1| hypothetical protein VIBHAR_02586 [Vibrio harveyi ATCC BAA-1116]
          Length = 257

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV VCP    Y+ E+ L  +  D+C  CG C   CP  A   ++E
Sbjct: 99  CNHCETPSCVPVCPTGATYKREDGLVLVDSDKCWGCGSCVTACPYGARFINSE 151


>gi|18977217|ref|NP_578574.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus
           furiosus DSM 3638]
 gi|18892876|gb|AAL80969.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus
           furiosus DSM 3638]
          Length = 627

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             VV + C  CK    +  CP   +   +  + I P  C  CGVC   CP DAIK 
Sbjct: 568 PVVVEDRCTGCKACILLTGCPALVYEPEKKKVRIDPLICTGCGVCNQLCPFDAIKF 623


>gi|315657349|ref|ZP_07910231.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491821|gb|EFU81430.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 212

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C++  C+EVCP       ++  + +   +C+ C  C+  CP  A + + E
Sbjct: 67  AYYVSISCNHCEYPVCMEVCPTTAMSRRKDGTVYVDESKCVGCRYCQWACPYGAPQLNPE 126

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            G      +  +Y ++  +          A +   + +  +K+
Sbjct: 127 TGHMSKCDLCYDYRSEGKDPACVAACPSRALEWGPIDELRKKH 169


>gi|260461936|ref|ZP_05810181.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032183|gb|EEW33449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 244

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y+   +  + I  D+CI C +C   CP  A + DT+
Sbjct: 80  SCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTD 134


>gi|237731324|ref|ZP_04561805.1| tetrathionate reductase subunit B [Citrobacter sp. 30_2]
 gi|226906863|gb|EEH92781.1| tetrathionate reductase subunit B [Citrobacter sp. 30_2]
          Length = 249

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 105 CNHCDNPPCVPVCPVQATFQREDGIVVVDNTRCVGCAYCVQACPYDARFINHE 157


>gi|318604458|emb|CBY25956.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 204

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    C +VCP    ++ ++  + +  D CI C  C   CP  A + D 
Sbjct: 59  AYYLSIACNHCSDPTCTKVCPTGAMHKRDDGFVVVSEDICIGCRYCHMACPYGAPQYDE 117


>gi|33600231|ref|NP_887791.1| tetrathionate reductase subunit B [Bordetella bronchiseptica RB50]
 gi|33567829|emb|CAE31743.1| tetrathionate reductase subunit B [Bordetella bronchiseptica RB50]
          Length = 257

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+ +  +  + C+ CG C   CP DA   + E
Sbjct: 113 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFINHE 165


>gi|301059898|ref|ZP_07200787.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 [delta
           proteobacterium NaphS2]
 gi|300446004|gb|EFK09880.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 [delta
           proteobacterium NaphS2]
          Length = 271

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPV------DAIKPDTE 60
           C  C +  CV VCP    ++ E    + +    CI C  C   CP         I  +  
Sbjct: 123 CNHCYNPPCVRVCPTQATFKREWDGIVEMDMHRCIGCRFCMAACPYGSRSFNFGIPREAP 182

Query: 61  PGLELWLKINSEYATQWPNITTK 83
             L      N EY  +   +  K
Sbjct: 183 KKLNPDFPTNKEYPERSKGVVEK 205


>gi|257790276|ref|YP_003180882.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830250|ref|ZP_08163707.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|257474173|gb|ACV54493.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487717|gb|EGC90155.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 222

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C   +CV+VCP    ++ E+    I   +CI C  C   CP      + E 
Sbjct: 58  YFLTVQCQHCADPECVKVCPTGASHKLEDGTVQIDKSKCIGCQFCAMSCPYGVRYLNEEE 117

Query: 62  G 62
            
Sbjct: 118 R 118


>gi|170768738|ref|ZP_02903191.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|170122286|gb|EDS91217.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
          Length = 205

 Score = 56.1 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119


>gi|323702340|ref|ZP_08114005.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323532646|gb|EGB22520.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 206

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            V  E C  C+   C  VCPV           +  + C  C  CE  CP  AI  
Sbjct: 8  AVVDNEKCRGCR--TCERVCPVLAIKMENRKAVVDNERCRGCANCEQRCPYYAITM 61


>gi|319949417|ref|ZP_08023479.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Dietzia
           cinnamea P4]
 gi|319436914|gb|EFV91972.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Dietzia
           cinnamea P4]
          Length = 321

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C H  CV+VCP       E   + +  D C  CG C   CP   I+  + P  +
Sbjct: 134 SDVCKHCTHAACVDVCPTGALMHTEFGTVVVQSDICNGCGYCVSACPYGVIERRSGPAGD 193

Query: 65  LWLKINSEYATQWPNITTKKES 86
             + I  +    +  +T  +  
Sbjct: 194 PAVGIAQKCTLCYDRLTEGQTP 215


>gi|317489694|ref|ZP_07948198.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|316911288|gb|EFV32893.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 216

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 60  SYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118


>gi|304391506|ref|ZP_07373448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ahrensia sp. R2A130]
 gi|303295735|gb|EFL90093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ahrensia sp. R2A130]
          Length = 273

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+   +  + +  D+CI CG+C   C   A + D
Sbjct: 98  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVDEDKCIGCGLCAWSCAYGAREMD 150


>gi|296103099|ref|YP_003613245.1| anaerobic dimethyl sulfoxide reductase, B subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057558|gb|ADF62296.1| anaerobic dimethyl sulfoxide reductase, B subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ ++  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKRDDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|322420686|ref|YP_004199909.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320127073|gb|ADW14633.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 260

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V + C  C +  CV+VCPV   Y+  + +  +  + CI CG C   CP       
Sbjct: 126 AFFVPKLCNQCDNPPCVQVCPVGATYQTADGVVLVDREWCIGCGYCIMGCPYGVRFFH 183


>gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii DSM 519]
 gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 625

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++ E  CI C  T C +VCPV C   + +    I  ++CI CG C   CPV+AI
Sbjct: 570 YMINEEKCIGC--TKCAKVCPVSCISGKVKEKHVIDQNQCIKCGACFDACPVNAI 622



 Score = 33.4 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++CP     +      I+ ++CI C  C   CPV  I    +   
Sbjct: 557 KICPAGAC-QSLLKYMINEEKCIGCTKCAKVCPVSCISGKVKEKH 600


>gi|89894374|ref|YP_517861.1| hypothetical protein DSY1628 [Desulfitobacterium hafniense Y51]
 gi|219668800|ref|YP_002459235.1| electron transfer flavoprotein alpha/beta-subunit
           [Desulfitobacterium hafniense DCB-2]
 gi|89333822|dbj|BAE83417.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539060|gb|ACL20799.1| Electron transfer flavoprotein alpha/beta-subunit
           [Desulfitobacterium hafniense DCB-2]
          Length = 428

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  ++   CI C    CV  CP +    G++ + +   +C +CG C   CP + +     
Sbjct: 1   MAVIIGPGCISC--GLCVGECPSEALELGDSGVVVDAGKCTECGDCVSVCPSNILS--LP 56

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            G     +            T    + P A        K EK  +P PGG
Sbjct: 57  EGAGKSAE------EPKQTSTEPSPAAPGA--------KVEKKAAPVPGG 92


>gi|304410948|ref|ZP_07392565.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307304881|ref|ZP_07584631.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304350845|gb|EFM15246.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306912283|gb|EFN42707.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 260

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    ++ ++  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|257790233|ref|YP_003180839.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474130|gb|ACV54450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 216

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 60  SYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118


>gi|308049671|ref|YP_003913237.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307631861|gb|ADN76163.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y V+  C  C +  CVEVCPV   ++   +  + + P  CI C  C   CP DA + D 
Sbjct: 63  SYYVSIGCNHCDNPVCVEVCPVGSMHKRRSDGLVHVDPAVCIGCEACAFACPYDAPQFDR 122

Query: 60  E 60
           E
Sbjct: 123 E 123


>gi|293396834|ref|ZP_06641108.1| anaerobic dimethyl sulfoxide reductase subunit B [Serratia
           odorifera DSM 4582]
 gi|291420305|gb|EFE93560.1| anaerobic dimethyl sulfoxide reductase subunit B [Serratia
           odorifera DSM 4582]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEQPACTQVCPTGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|332289260|ref|YP_004420112.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
 gi|330432156|gb|AEC17215.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C++  C +VCP    ++ E+   I + + CI C  C   CP DA + D
Sbjct: 60  AYYLSISCNHCENPACTKVCPTGAMHKNEDGFVIVNEEVCIGCRYCHMACPYDAPQYD 117


>gi|261339676|ref|ZP_05967534.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318503|gb|EFC57441.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|261339233|ref|ZP_05967091.1| hypothetical protein ENTCAN_05467 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319088|gb|EFC58026.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|257463022|ref|ZP_05627425.1| hydrogenase, Fe-only [Fusobacterium sp. D12]
          Length = 652

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C          +    C  CG C   CPV AI    
Sbjct: 219 FKITEKCIGC--TACARVCPVKCIAGAPKKRHFLDTSRCTHCGQCVSACPVGAIFEGD 274



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           ++ T  C  C    CV  CPV   +EG++ L
Sbjct: 249 FLDTSRCTHC--GQCVSACPVGAIFEGDHTL 277


>gi|16272978|ref|NP_439205.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae Rd KW20]
 gi|145632412|ref|ZP_01788147.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 3655]
 gi|229843915|ref|ZP_04464056.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 6P18H1]
 gi|260580135|ref|ZP_05847965.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|1169361|sp|P45003|DMSB_HAEIN RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|1574080|gb|AAC22705.1| anaerobic dimethyl sulfoxide reductase, chain B (dmsB) [Haemophilus
           influenzae Rd KW20]
 gi|144987319|gb|EDJ93849.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 3655]
 gi|229812909|gb|EEP48597.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 6P18H1]
 gi|260093419|gb|EEW77352.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|301169793|emb|CBW29394.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae 10810]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYD 117


>gi|212696805|ref|ZP_03304933.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676095|gb|EEB35702.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 502

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 23/53 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI  
Sbjct: 115 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNAISH 167



 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 19/74 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-----------------NFLAIHPDECIDCGVC 46
           +  + CI C    CV+ CP +     +                 N   I  D+C+ CG C
Sbjct: 145 IDQDKCIKC--GKCVQACPYNAISHTKRPCAEACGVKAIKSDKLNRAEIDDDKCVACGRC 202

Query: 47  EPECPVDAIKPDTE 60
              CP  AI   TE
Sbjct: 203 ITACPFGAISDKTE 216


>gi|270307565|ref|YP_003329623.1| Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit
           [Dehalococcoides sp. VS]
 gi|270153457|gb|ACZ61295.1| Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit
           [Dehalococcoides sp. VS]
          Length = 267

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    CV VCPV   ++  N   +   D+C  C  C+  CP    K + +     
Sbjct: 72  RCLHCYEPACVSVCPVGALHKRPNGAVVWDQDKCFGCRYCQNACPFQIPKFEWDDNWAK 130


>gi|238791881|ref|ZP_04635518.1| Tetrathionate reductase subunit B [Yersinia intermedia ATCC 29909]
 gi|238728985|gb|EEQ20502.1| Tetrathionate reductase subunit B [Yersinia intermedia ATCC 29909]
          Length = 244

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+  +  + +    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVVDNTRCVGCAYCVQACPYEA 146


>gi|171185318|ref|YP_001794237.1| thiamine pyrophosphate binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934530|gb|ACB39791.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Thermoproteus neutrophilus V24Sta]
          Length = 590

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C     +  C       G+    I P  C  CG+C   CP  AIK + E  L
Sbjct: 526 VDVDKCVGCSLCYGLLRCSAIAPR-GDRKAYIDPALCTGCGMCAEVCPTGAIKGERERWL 584

Query: 64  ELWLK 68
           E+W +
Sbjct: 585 EIWRQ 589



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 2/24 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC 25
            Y+    C  C    C EVCP   
Sbjct: 554 AYIDPALCTGC--GMCAEVCPTGA 575


>gi|160880195|ref|YP_001559163.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
 gi|160428861|gb|ABX42424.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
          Length = 644

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           + +NCI C    C +VCPVDC     +    I    C  CG C   CPV+AI
Sbjct: 220 IMDNCIGCDK--CTKVCPVDCIVGDFKEQHYIDYTRCTHCGACLSTCPVNAI 269


>gi|294141483|ref|YP_003557461.1| hypothetical protein SVI_2712 [Shewanella violacea DSS12]
 gi|293327952|dbj|BAJ02683.1| hypothetical protein [Shewanella violacea DSS12]
          Length = 683

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C    C++ CP   + +  E    +  P+ C  CG C   CP +A + D
Sbjct: 154 ISMACNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLD 209


>gi|170726214|ref|YP_001760240.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169811561|gb|ACA86145.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 682

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C    C++ CP   + +  E    +  P+ C  CG C   CP +A + D
Sbjct: 164 ISMACNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLD 219


>gi|325847091|ref|ZP_08169917.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481063|gb|EGC84108.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 502

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 23/53 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI  
Sbjct: 115 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNAISH 167



 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 19/74 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-----------------NFLAIHPDECIDCGVC 46
           +  + CI C    CV+ CP +     +                 N   I  D+C+ CG C
Sbjct: 145 IDQDKCIKC--GKCVQACPYNAISHTKRPCAEACGVKAIKSDKLNRAEIDDDKCVACGRC 202

Query: 47  EPECPVDAIKPDTE 60
              CP  AI   TE
Sbjct: 203 ITACPFGAISDKTE 216


>gi|311279455|ref|YP_003941686.1| tetrathionate reductase subunit B [Enterobacter cloacae SCF1]
 gi|308748650|gb|ADO48402.1| tetrathionate reductase subunit B [Enterobacter cloacae SCF1]
          Length = 249

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C    CV VCPV   ++ ++  + I    C+ C  C   CP DA  I  DT+   +
Sbjct: 100 CNHCDSPPCVPVCPVQATFQRKDGIVVIDNTRCVGCAYCVQACPYDARFINHDTQTADK 158


>gi|242280658|ref|YP_002992787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123552|gb|ACS81248.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 304

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  + CI C    C+E CP    +  +  + I P +C+ CGVC  +C  DA+
Sbjct: 236 AVVDPQKCIGC--GQCMEYCPFGAMHLRDKRMRIDPKKCMGCGVCTNKCRKDAL 287


>gi|188585177|ref|YP_001916722.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349864|gb|ACB84134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 284

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           Y     C+ C    CV  CP D  Y+ +  L  I    C++CG C   CP +AIK D
Sbjct: 90  YFKKNACLHCNEASCVMACPADAIYKDDLGLTQIDNSICVNCGYCVSACPYNAIKYD 146


>gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 610

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCP +  +     +  I  + C+ CG C   C   AI   T
Sbjct: 544 SYVISPEKCVGC--TACARVCPTNAIHGEVRKVHEIDQEACVRCGSCIEVCRFGAISKVT 601

Query: 60  E 60
            
Sbjct: 602 P 602



 Score = 33.8 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            +CP     +      I P++C+ C  C   CP +AI  +     E
Sbjct: 532 NICPAKKC-KAFISYVISPEKCVGCTACARVCPTNAIHGEVRKVHE 576


>gi|121535575|ref|ZP_01667382.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305815|gb|EAX46750.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 499

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C+  CP       +N   I  + C++CG+C+  CP  AI   + P
Sbjct: 106 FIVTDACRNCVAHHCINSCPKKAIAVVQNRAFIDKNRCVECGLCKRSCPYGAIIEVSRP 164



 Score = 41.1 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++    C+ C    C   CP     E                  +    I+ D+C+ CG
Sbjct: 136 AFIDKNRCVEC--GLCKRSCPYGAIIEVSRPCERACDLKAVVAGADRRAVINYDKCVQCG 193

Query: 45  VCEPECPVDAI 55
            C+  CP  AI
Sbjct: 194 ACKIACPFGAI 204


>gi|145628000|ref|ZP_01783801.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.1-21]
 gi|145630136|ref|ZP_01785918.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|145634201|ref|ZP_01789912.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittAA]
 gi|145636509|ref|ZP_01792177.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittHH]
 gi|145638142|ref|ZP_01793752.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittII]
 gi|260581897|ref|ZP_05849693.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|319776718|ref|YP_004139206.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3047]
 gi|319897467|ref|YP_004135664.1| oxidoreductase, fe-s subunit [Haemophilus influenzae F3031]
 gi|329123894|ref|ZP_08252448.1| anaerobic dimethyl sulfoxide reductase subunit B [Haemophilus
           aegyptius ATCC 11116]
 gi|144979775|gb|EDJ89434.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.1-21]
 gi|144984417|gb|EDJ91840.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|145268645|gb|EDK08638.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittAA]
 gi|145270334|gb|EDK10269.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittHH]
 gi|145272471|gb|EDK12378.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittII]
 gi|260095090|gb|EEW78982.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|309751304|gb|ADO81288.1| Anaerobic dimethyl sulfoxide reductase, subunit B [Haemophilus
           influenzae R2866]
 gi|309973477|gb|ADO96678.1| Anaerobic dimethyl sulfoxide reductase, subunit B [Haemophilus
           influenzae R2846]
 gi|317432973|emb|CBY81342.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3031]
 gi|317451309|emb|CBY87547.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3047]
 gi|327468501|gb|EGF13982.1| anaerobic dimethyl sulfoxide reductase subunit B [Haemophilus
           aegyptius ATCC 11116]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYD 117


>gi|325830302|ref|ZP_08163759.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|325487769|gb|EGC90207.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 216

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 60  SYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118


>gi|331656967|ref|ZP_08357929.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
 gi|331055215|gb|EGI27224.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
          Length = 205

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  TYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|229828064|ref|ZP_04454133.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM
           14600]
 gi|229792658|gb|EEP28772.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM
           14600]
          Length = 490

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           TY VT+NC  C    C+  C      EG+  + I P +C +CG C   CP +AI   T P
Sbjct: 95  TYTVTDNCRFCLGKACINSCKFGAISEGDLRMHIDPAKCKECGQCAKNCPYEAIVHLTRP 154



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 15/68 (22%)

Query: 3   YVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCE 47
           ++    C  C                  C   CPV      E     I  ++C+ CG C 
Sbjct: 127 HIDPAKCKECGQCAKNCPYEAIVHLTRPCKRACPVGAITFDEYGFCKIDEEKCVSCGHCI 186

Query: 48  PECPVDAI 55
             CP  AI
Sbjct: 187 HSCPFGAI 194


>gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 594

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E C  C    C +VCPVD   + E    I  D+CI CG C  +CP +A++
Sbjct: 541 IIAEECRNC--GLCAKVCPVDAITKEEEAHVIDLDKCIKCGSCLDKCPFNAVQ 591


>gi|330447721|ref|ZP_08311369.1| dimethylsulfoxide reductase, chain B [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491912|dbj|GAA05866.1| dimethylsulfoxide reductase, chain B [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y V+  C  C    C +VCP    ++   + F+ +  ++CI C  C   CP  A + + 
Sbjct: 59  SYYVSIACNHCTKPACTKVCPSGAMHKRKEDGFVVVDTEKCIGCQYCGMACPYGAPQYNA 118

Query: 60  E 60
           E
Sbjct: 119 E 119


>gi|291527156|emb|CBK92742.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale M104/1]
          Length = 485

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI  
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEAGRLRSHIDPQKCKECGRCAQACPYNAIAH 147



 Score = 41.9 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
           +++  + C  C                  C   CPV+     E  +  I   +CI CG C
Sbjct: 123 SHIDPQKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDESKCIRCGKC 182

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 183 IHSCPFGAI 191


>gi|238924739|ref|YP_002938255.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656]
 gi|238876414|gb|ACR76121.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656]
 gi|291526109|emb|CBK91696.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale DSM 17629]
          Length = 485

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI  
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEAGRLRSHIDPQKCKECGRCAQACPYNAIAH 147



 Score = 41.9 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
           +++  + C  C                  C   CPV+     E  +  I   +CI CG C
Sbjct: 123 SHIDPQKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDESKCIRCGKC 182

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 183 IHSCPFGAI 191


>gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 596

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+           I  D+CI CG C  +CP  AI 
Sbjct: 542 YIDPDKCKGC--GICAKNCPVNAISGKPRQPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYE 28
            YV+  + CI C    C+E CP    Y+
Sbjct: 570 PYVIDQDKCIKC--GTCIEKCPFGAIYK 595


>gi|183598540|ref|ZP_02960033.1| hypothetical protein PROSTU_01934 [Providencia stuartii ATCC 25827]
 gi|188020717|gb|EDU58757.1| hypothetical protein PROSTU_01934 [Providencia stuartii ATCC 25827]
          Length = 245

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   ++ E+  + I  + C+ C  C   CP DA
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVIDNERCVGCAYCVQACPYDA 146


>gi|146303598|ref|YP_001190914.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701848|gb|ABP94990.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 276

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  CVEVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 90  YNIPINCFHCMNAPCVEVCPVGATFKRTQDGIVLVDYEECIGTKYCIYACPYGNRFFDYV 149

Query: 61  PGLEL 65
            G+  
Sbjct: 150 EGVTK 154


>gi|78042641|ref|YP_359458.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994756|gb|ABB13655.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 203

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           +   C+ C +  C+ VCPV   Y+ ++  + I   +CI C +C   CP  A
Sbjct: 69  IPMPCMHCDNAPCIAVCPVKASYKRKDGIVVIDKYKCIGCRLCLKACPYQA 119


>gi|283795361|ref|ZP_06344514.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|291077019|gb|EFE14383.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|295091066|emb|CBK77173.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 262

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y +T+ CI C    C +VCP  CF+         P  CI C  C   CP+ AI       
Sbjct: 174 YQITDECIGC--GICQKVCPKGCFHLEGQKSIWEPAGCISCMACIHACPMAAIHLTMPEK 231

Query: 63  LELWLKINSEYA 74
                  N   +
Sbjct: 232 NPKARYRNENIS 243


>gi|282599783|ref|ZP_06257365.1| tetrathionate reductase complex, subunit B [Providencia rustigianii
           DSM 4541]
 gi|282567821|gb|EFB73356.1| tetrathionate reductase complex, subunit B [Providencia rustigianii
           DSM 4541]
          Length = 250

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ E+  + +  + C+ C  C   CP DA
Sbjct: 105 CNHCDNPPCVPVCPVQATYQREDGIVVVDNERCVGCAYCVQACPYDA 151



 Score = 33.8 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 13/90 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDA-I 55
           V  E C+ C +  CV+ CP D  +   +             +       C   C   A I
Sbjct: 132 VDNERCVGCAY--CVQACPYDARFINHSTQTADKCTFCAHRLEVGLLPACVESCVGGARI 189

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKE 85
             D +        I    +     I   K 
Sbjct: 190 IGDLKDPNST---IRKMLSEHEAQIKVLKP 216


>gi|149201260|ref|ZP_01878235.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|149145593|gb|EDM33619.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 260

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 87  SCLHCDDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDQAEGVMK 146


>gi|327309969|ref|YP_004336866.1| sulfur reductase subunit B [Thermoproteus uzoniensis 768-20]
 gi|326946448|gb|AEA11554.1| sulfur reductase, subunit B [Thermoproteus uzoniensis 768-20]
          Length = 266

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  C++  C  VCP    ++   +  + I+ D CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFHCRNPACTTVCPTGAIFKRKEDGVVVINYDVCIGCRYCENACPYGNITFDP 129

Query: 60  EPGLELW--LKINSEYATQWPNITTKKES 86
             G+     L I+  Y    P    +   
Sbjct: 130 VEGVSKKCTLAIDRIYDESLPE-YERIPP 157


>gi|163744893|ref|ZP_02152253.1| 4Fe-4S binding domain protein [Oceanibulbus indolifex HEL-45]
 gi|161381711|gb|EDQ06120.1| 4Fe-4S binding domain protein [Oceanibulbus indolifex HEL-45]
          Length = 254

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D
Sbjct: 81  SCLHCDDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGAREMD 133


>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E+CI C  T CV+VCPVD    E +    I  DECI+CG C  ECPVDAI
Sbjct: 545 YVIDEEDCIGC--TSCVDVCPVDAIEGEKKEAHVIDTDECINCGSCVDECPVDAI 597



 Score = 40.4 bits (93), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            E CP     E      I  ++CI C  C   CPVDAI+ + +   
Sbjct: 530 EETCPAGNCQELVAGYVIDEEDCIGCTSCVDVCPVDAIEGEKKEAH 575


>gi|222053655|ref|YP_002536017.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
 gi|221562944|gb|ACM18916.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. FRC-32]
          Length = 754

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          TE C  C    CV  CPV      + F  I  + CI CG C   CP  A
Sbjct: 8  TEKCRKCY--SCVRSCPVKAIKVEKTFTEIIFERCIGCGNCLSNCPQHA 54


>gi|167625914|ref|YP_001676208.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355936|gb|ABZ78549.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 231

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  V   C  C +  CV VCPV+  Y+   +  + I+ DECI C +C   CP  A + D 
Sbjct: 81  TLAVPNQCNQCDNPACVYVCPVEATYKRKEDGIVVINHDECIHCQLCVDACPYGARRKDE 140


>gi|332762950|gb|EGJ93200.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-671]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|229846080|ref|ZP_04466192.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 7P49H1]
 gi|229811084|gb|EEP46801.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 7P49H1]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYD 117


>gi|169351005|ref|ZP_02867943.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552]
 gi|169292067|gb|EDS74200.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552]
          Length = 507

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+E+CP +          I  D+CI CG+C+  CP DAI     P
Sbjct: 113 YEVSNGCQACLAHPCIEICPKNAISFKNGKAYIDQDKCIKCGLCKNNCPYDAILKKERP 171



 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            Y+  + CI C                  C + C ++     E     I+ D+C+ CG+C
Sbjct: 143 AYIDQDKCIKCGLCKNNCPYDAILKKERPCAKACGMNAIESDEYGNAHINYDKCVSCGMC 202

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 203 LVSCPFGAI 211


>gi|168263787|ref|ZP_02685760.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194445522|ref|YP_002040639.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197262048|ref|ZP_03162122.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|194404185|gb|ACF64407.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197240303|gb|EDY22923.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205347598|gb|EDZ34229.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 244

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|218780897|ref|YP_002432215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762281|gb|ACL04747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 3   YVV---TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YVV    E CI C    CVE CP+D F EGE+ +++ P  CI CG+C   CP +A+  + 
Sbjct: 272 YVVQFNEEECINC--GTCVERCPMDAFTEGEDVISVDPGRCIGCGLCTTTCPTEALSLEI 329

Query: 60  EPGLE 64
           +P  +
Sbjct: 330 QPEEK 334


>gi|145640720|ref|ZP_01796303.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|148828211|ref|YP_001292964.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittGG]
 gi|145274646|gb|EDK14509.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.4-21]
 gi|148719453|gb|ABR00581.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittGG]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYD 117


>gi|325971008|ref|YP_004247199.1| hypothetical protein SpiBuddy_1180 [Spirochaeta sp. Buddy]
 gi|324026246|gb|ADY13005.1| protein of unknown function DUF362 [Spirochaeta sp. Buddy]
          Length = 372

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            + CI C+   C+++CP +        + I P  CI C  C   CP  AI  D 
Sbjct: 317 PDPCIQCRK--CIDICPANALTMEHKRIIIDPSVCIRCYCCHEVCPASAIAVDE 368


>gi|325679199|ref|ZP_08158790.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324109128|gb|EGC03353.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 478

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C +VCP        N +  I   +C++CG C   CP  AI     P
Sbjct: 94  YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAHIDKSKCVECGRCSKVCPYSAITNRVRP 153



 Score = 40.7 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-----------------ENFLAIHPDECIDCG 44
            ++    C+ C    C +VCP                        +   AI  ++CI CG
Sbjct: 125 AHIDKSKCVEC--GRCSKVCPYSAITNRVRPCQNACKIKAISINEDGGAAIDNEKCISCG 182

Query: 45  VCEPECPVDAI 55
            C  +CP  AI
Sbjct: 183 ACVYQCPFGAI 193


>gi|168818961|ref|ZP_02830961.1| anaeroBic dimethyl sulfoxide reductase chain b [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205343944|gb|EDZ30708.1| anaeroBic dimethyl sulfoxide reductase chain b [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320084704|emb|CBY94495.1| probable anaerobic dimethyl sulfoxide reductase chain ynfG DMSO
           reductase iron-sulfur subunit ynfG [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 182

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
            ++ +C  C    C++VCP   + +  + + +   + CI C +C   CP  A   D + 
Sbjct: 52  FISMSCNHCDDPQCMKVCPAGTYTKRADGIVVQDHERCIGCRMCIMACPWSAPVYDPQE 110


>gi|68249608|ref|YP_248720.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 86-028NP]
 gi|68057807|gb|AAX88060.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 86-028NP]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYD 117


>gi|262402832|ref|ZP_06079393.1| ferredoxin [Vibrio sp. RC586]
 gi|262351614|gb|EEZ00747.1| ferredoxin [Vibrio sp. RC586]
          Length = 46

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +++++N+E A  WPN+T  K ++  AAK DGV  K  
Sbjct: 3   DQRIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLN 42


>gi|262165101|ref|ZP_06032838.1| ferredoxin [Vibrio mimicus VM223]
 gi|262172136|ref|ZP_06039814.1| ferredoxin [Vibrio mimicus MB-451]
 gi|261893212|gb|EEY39198.1| ferredoxin [Vibrio mimicus MB-451]
 gi|262024817|gb|EEY43485.1| ferredoxin [Vibrio mimicus VM223]
          Length = 46

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +++++N+E A  WPN+T  K ++  AAK DGV  K +
Sbjct: 3   DQRIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLD 42


>gi|167756634|ref|ZP_02428761.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402]
 gi|237733922|ref|ZP_04564403.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702809|gb|EDS17388.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402]
 gi|229383003|gb|EEO33094.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 507

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + V+  C  C    C+EVCP +     +    I  D+CI CG+C+  CP DAI     P
Sbjct: 113 FEVSSGCQACLAHPCIEVCPKNAISFKDGKAYIDQDKCIKCGLCKTNCPYDAILKRERP 171



 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            Y+  + CI C                  C + C +D     E     I+ D+C+ CG+C
Sbjct: 143 AYIDQDKCIKCGLCKTNCPYDAILKRERPCAKACGMDAIETDEYGNAHINYDKCVSCGMC 202

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 203 LVSCPFGAI 211


>gi|325833013|ref|ZP_08165640.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|325485730|gb|EGC88195.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  C+ VCP    Y+ +   + I  ++CI C +C   CP +A   +    +  
Sbjct: 64  ACQHCENPACLRVCPTGATYKDDKGRVEIDYEKCIGCRMCMAACPYNARVFNWNEPVRD 122


>gi|295092507|emb|CBK78614.1| Iron only hydrogenase large subunit, C-terminal domain [Clostridium
           cf. saccharolyticum K10]
          Length = 507

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP              I  D+CI CG C+  C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGYNAIIIQERP 175



 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
           +Y+  + CI C                  C   C +D  +        I  D+C+ CG C
Sbjct: 147 SYIDQDKCIKCGKCKEVCGYNAIIIQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|283833194|ref|ZP_06352935.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291070827|gb|EFE08936.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|73670065|ref|YP_306080.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina
           barkeri str. Fusaro]
 gi|72397227|gb|AAZ71500.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina
           barkeri str. Fusaro]
          Length = 792

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  E CI C+   C+EVC             +    C  CG C   CP  AI+     
Sbjct: 573 AHVDPEKCIGCR--TCLEVCKFGKIKIENKKAVVDEVSCYGCGDCSAACPAGAIQMRNFE 630

Query: 62  GLE 64
             +
Sbjct: 631 NEQ 633



 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 19/82 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           +++ + C  C    C  VCPV+        +                   I PD C+ CG
Sbjct: 237 FILEDKCKGCVD-LCSAVCPVEIENPMNYGVGKTRAIYMPIPQSVPQVVLIDPDHCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C   CP DA+  + +P    +
Sbjct: 296 LCLQACPADAVDYEQKPEEIEF 317


>gi|332159393|ref|YP_004424672.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp. NA2]
 gi|331034856|gb|AEC52668.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp. NA2]
          Length = 613

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ + C  CK    +  CP   +      + I    C  CG+C   CP DAIK   E
Sbjct: 555 IIEDKCTGCKACILLSGCPALIYDPETRKVKIDELICTGCGICNQLCPFDAIKFKEE 611


>gi|319936847|ref|ZP_08011259.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1]
 gi|319808115|gb|EFW04687.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1]
          Length = 366

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + CI C    C+++C  D     ++  +I+ D+C+ CG C   CP DAIK   +   
Sbjct: 190 VVQDLCIGC--GQCIKICAHDAPTITDHKASINHDKCVGCGRCIGVCPKDAIKASMDEAN 247

Query: 64  ELWLKINSEYATQWPNITTKKES 86
           ++   +N + A     +   +  
Sbjct: 248 DI---LNYKIAEYTKAVVDGRPC 267


>gi|317406714|gb|EFV86874.1| tetrathionate reductase subunit B [Achromobacter xylosoxidans C54]
          Length = 255

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ +  +  + C+ CG C   CP DA  I  DT+   +
Sbjct: 111 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFINHDTQTADK 169



 Score = 33.8 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 10/77 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDA-I 55
           V  E C+ C +  CV+ CP D  +   +          +  +       C   C   A I
Sbjct: 138 VDNERCVGCGY--CVQACPYDARFINHDTQTADKCTFCEHRLEAGLLPACVESCVGGARI 195

Query: 56  KPDTEPGLELWLKINSE 72
             D         ++ +E
Sbjct: 196 IGDLNDPDSAISRLMAE 212


>gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
          Length = 626

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y +T+ CI C  T C + CPV C     +    I   +CI CG CE  CPV A+
Sbjct: 571 SYEITDKCIGC--TKCAKNCPVSCIEGAVKKQHVIDKSQCIKCGNCETVCPVHAV 623


>gi|319425005|gb|ADV53079.1| tetrathionate reductase, 4Fe-4S ferredoxin subunit, TtrB
           [Shewanella putrefaciens 200]
          Length = 260

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    ++ ++  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|146276820|ref|YP_001166979.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145555061|gb|ABP69674.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 237

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   CV VCP        + +  I    C+ CG+C   CP  A + D
Sbjct: 77  CQHCEDPPCVPVCPTGASQLRPDGVVAIDDARCLGCGLCAWACPYGARELD 127


>gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 596

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+           I  D+CI CG C  +CP  AI 
Sbjct: 542 YIDPDKCKGC--GICAKNCPVNAISGKPRQPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 34.2 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYE 28
            YV+  + CI C    C+E CP    Y+
Sbjct: 570 PYVIDQDKCIKC--GTCIEKCPFGAIYK 595


>gi|331646162|ref|ZP_08347265.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
 gi|330910677|gb|EGH39187.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           AA86]
 gi|331044914|gb|EGI17041.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGLVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|299532215|ref|ZP_07045609.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
 gi|298719877|gb|EFI60840.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
          Length = 250

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV VCPV   ++  + +  +  + C+ CG C   CP DA   + E
Sbjct: 105 CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHE 157



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 18/89 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIK 56
           V  E C+ C +  CV+ CP D  +              +  +       C   C   A  
Sbjct: 132 VDNERCVGCGY--CVQACPYDARFINHETQTADKCTFCEHRLEAGLLPACVESCVGGARV 189

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKE 85
                       +N  ++     I   K+
Sbjct: 190 IGD---------LNDAHSEINQRINAHKD 209


>gi|257792145|ref|YP_003182751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488764|ref|ZP_07947298.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|257476042|gb|ACV56362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912134|gb|EFV33709.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  C+ VCP    Y+ +   + I  ++CI C +C   CP +A   +    +  
Sbjct: 64  ACQHCENPACLRVCPTGATYKDDKGRVEIDYEKCIGCRMCMAACPYNARVFNWNEPVRD 122


>gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4]
 gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4]
          Length = 626

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y +T+ CI C  T C + CPV C     +    I   +CI CG CE  CPV A+
Sbjct: 571 SYEITDKCIGC--TKCAKNCPVSCIEGAVKKQHVIDKSQCIKCGNCETVCPVHAV 623


>gi|165977109|ref|YP_001652702.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307246598|ref|ZP_07528669.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|165877210|gb|ABY70258.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306852470|gb|EFM84704.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++  +   I + + CI C  C   CP DA + 
Sbjct: 60  AYYMSISCNHCDDPACVKVCPTGAMHKNADGFVIVNEETCIGCRYCSMACPYDAPQY 116


>gi|160876964|ref|YP_001556280.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|160862486|gb|ABX51020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|315269167|gb|ADT96020.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 260

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    ++ ++  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|145756|gb|AAA83844.1| anaerobic dimethyl sulfoxide reductase [Escherichia coli]
          Length = 207

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|220931057|ref|YP_002507965.1| hydrogenase large subunit domain protein [Halothermothrix orenii H
           168]
 gi|219992367|gb|ACL68970.1| hydrogenase large subunit domain protein [Halothermothrix orenii H
           168]
          Length = 491

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VVT  C  C    CV  CP        N   +  ++C++CG+C   CP  AI     P
Sbjct: 115 VVTNACRNCVAHHCVNSCPRGAITIVNNQAYVIREKCVECGLCVKACPYGAILEVERP 172



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 19/76 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            YV+ E C+ C    CV+ CP     E                  ++   I  + CI+CG
Sbjct: 144 AYVIREKCVEC--GLCVKACPYGAILEVERPCTSACSLDAVVPGEKSTAEIDDNNCIECG 201

Query: 45  VCEPECPVDAIKPDTE 60
            C   CP  AI   +E
Sbjct: 202 SCIEACPFGAISYKSE 217


>gi|325278937|ref|YP_004251479.1| Fe-S cluster domain-containing protein [Odoribacter splanchnicus
          DSM 20712]
 gi|324310746|gb|ADY31299.1| Fe-S cluster domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 452

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          + +E C  C H  C+ VCP            I+   C DCG+C   CP  AI  + +   
Sbjct: 12 INSEVCTGCTH--CMNVCPTAAIRIKYGKATINEAACTDCGMCLKTCPRQAIYVEQDDFN 69

Query: 64 ELW 66
          +++
Sbjct: 70 QIF 72


>gi|283796610|ref|ZP_06345763.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1]
 gi|291076031|gb|EFE13395.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1]
          Length = 507

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP              I  D+CI CG C+  C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGYNAIIVQERP 175



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
           +Y+  + CI C                  C   C +D  +        I  D+C+ CG C
Sbjct: 147 SYIDQDKCIKCGKCKEVCGYNAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|153002240|ref|YP_001367921.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151366858|gb|ABS09858.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 260

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    ++ ++  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|146291769|ref|YP_001182193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563459|gb|ABP74394.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 260

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    ++ ++  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|325265417|ref|ZP_08132141.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5]
 gi|324029418|gb|EGB90709.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5]
          Length = 503

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP            I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKGAISFVNGKSFIDQEKCIKCGKCKSVCPYDAIAKKERP 175



 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  E CI C    C  VCP D   + E                     I P++C+ CG
Sbjct: 147 SFIDQEKCIKC--GKCKSVCPYDAIAKKERPCKNACGVSAIGSDKYGRAFIDPEKCVSCG 204

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 205 MCMVSCPFGAI 215


>gi|52549648|gb|AAU83497.1| Fe-S cluster binding protein [uncultured archaeon GZfos29E12]
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C +VCP D          I   D+CI CG C   C + AI  D E
Sbjct: 54  CRACEYPPCAKVCPTDALRLRNGGGVILDKDKCIGCGFCAQACIMGAIFWDDE 106


>gi|167851341|ref|ZP_02476849.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei B7210]
          Length = 296

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 83  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 136


>gi|317487970|ref|ZP_07946553.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833273|ref|ZP_08165779.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|316912919|gb|EFV34445.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485655|gb|EGC88123.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 206

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C++  C++VCPV   Y+ +   + IH D+CI C +C   CP +A   +     
Sbjct: 61  IPVACQHCENPACLKVCPVGATYKDDMGRVEIHYDKCIGCRICMAACPYNARVFNWSEPE 120

Query: 64  EL 65
             
Sbjct: 121 RD 122


>gi|295115323|emb|CBL36170.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SM4/1]
          Length = 507

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP              I  D+CI CG C+  C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGYNAIIVQERP 175



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
           +Y+  + CI C                  C   C +D  +        I  D+C+ CG C
Sbjct: 147 SYIDQDKCIKCGKCKEVCGYNAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|284920748|emb|CBG33811.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           042]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|168239267|ref|ZP_02664325.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734836|ref|YP_002114400.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710338|gb|ACF89559.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288003|gb|EDY27390.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|322615129|gb|EFY12052.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619972|gb|EFY16845.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622283|gb|EFY19128.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627806|gb|EFY24596.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633095|gb|EFY29838.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636659|gb|EFY33362.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641147|gb|EFY37789.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644916|gb|EFY41449.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650245|gb|EFY46659.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655820|gb|EFY52122.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660146|gb|EFY56385.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665288|gb|EFY61476.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669545|gb|EFY65693.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673471|gb|EFY69573.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677399|gb|EFY73463.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679938|gb|EFY75977.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687410|gb|EFY83382.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192363|gb|EFZ77594.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198618|gb|EFZ83719.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203099|gb|EFZ88130.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208664|gb|EFZ93602.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213821|gb|EFZ98599.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217641|gb|EGA02356.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218989|gb|EGA03499.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223656|gb|EGA07966.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229443|gb|EGA13566.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232666|gb|EGA16762.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240296|gb|EGA24340.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242716|gb|EGA26737.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245927|gb|EGA29915.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252504|gb|EGA36348.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259120|gb|EGA42765.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260073|gb|EGA43698.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267163|gb|EGA50648.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271514|gb|EGA54935.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 244

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|168233577|ref|ZP_02658635.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470968|ref|ZP_03076952.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457332|gb|EDX46171.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332342|gb|EDZ19106.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 244

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|124028465|ref|YP_001013785.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus
           DSM 5456]
 gi|123979159|gb|ABM81440.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus
           DSM 5456]
          Length = 651

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV  E C  C        CP       +    + P  C  CGVC   CP  A KP   P 
Sbjct: 580 YVDEEKCTACGICYTAFNCPAIRRRP-DGKAMVDPALCTGCGVCAQVCPFGAFKPSQPPS 638

Query: 63  LELWLKINS 71
            E WLKI  
Sbjct: 639 -EEWLKIMR 646


>gi|291550262|emb|CBL26524.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus torques L2-14]
          Length = 434

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP            I  D+CI CG C+  CP DAI     P
Sbjct: 48  YEVSNVCKGCLAHPCQEVCPRGAISMVNGKSFIDQDKCIKCGKCKSVCPYDAIAKKERP 106



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  + CI C    C  VCP D   + E                     I  D+C+ CG
Sbjct: 78  SFIDQDKCIKC--GKCKSVCPYDAIAKKERPCKKACGVNAITSDKLGRAYIDADKCVSCG 135

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 136 MCMVSCPFGAI 146


>gi|317050998|ref|YP_004112114.1| hypothetical protein Selin_0818 [Desulfurispirillum indicum S5]
 gi|316946082|gb|ADU65558.1| hypothetical protein Selin_0818 [Desulfurispirillum indicum S5]
          Length = 56

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+++ C+ C    C   CPV    +G+    I  D CIDCG CE  CP  AI
Sbjct: 1  MAYVISDACVNC--GACEPECPVSAISQGDAIYVIDADTCIDCGACESVCPSGAI 53


>gi|304559052|gb|ADM41716.1| Pyridine nucleotide-disulfide oxidoreductase family protein
          [Edwardsiella tarda FL6-60]
          Length = 655

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCP     +  + + +  ++CI C  C   CP  AI
Sbjct: 33 CRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAI 79


>gi|170680702|ref|YP_001744275.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
 gi|170518420|gb|ACB16598.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|161503521|ref|YP_001570633.1| hypothetical protein SARI_01597 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864868|gb|ABX21491.1| hypothetical protein SARI_01597 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 250

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 106 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 158


>gi|222054116|ref|YP_002536478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563405|gb|ACM19377.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 261

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V + C  C +  CV+VCPV   Y+  + +  +    CI CG C   CP       
Sbjct: 127 AFFVPKLCNQCDNPPCVQVCPVGATYQTADGVVLVDRSWCIGCGYCIMGCPYGVRFFH 184


>gi|302387727|ref|YP_003823549.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1]
 gi|302198355|gb|ADL05926.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1]
          Length = 483

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YVVT+NC LC    C   C  +    G +   I PD+C +CG C   CP +AI
Sbjct: 94  YVVTDNCQLCMGKACQSSCNFNAISMGRDRAYIDPDKCKECGKCSQACPYNAI 146



 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            Y+  + C  C                  C + CPVD     EN  + I   +CI CG C
Sbjct: 124 AYIDPDKCKECGKCSQACPYNAIADLTRPCKKSCPVDAITMDENGIVVIDESKCIQCGAC 183

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 184 IHGCPFGAI 192


>gi|289207331|ref|YP_003459397.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288942962|gb|ADC70661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 231

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  +C+ C++ DCV VCP    Y+   +  + +  D+C+ C  C   CP  A + D E G
Sbjct: 68  IPMSCMHCQYADCVNVCPTGASYKRPEDGIVLVDQDKCMGCNYCAWACPYGARELDREDG 127

Query: 63  LEL 65
           +  
Sbjct: 128 VMK 130


>gi|121594763|ref|YP_986659.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222110623|ref|YP_002552887.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120606843|gb|ABM42583.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221730067|gb|ACM32887.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 260

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV VCPV   ++  + +  +  + C+ CG C   CP DA   + E
Sbjct: 116 CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHE 168



 Score = 38.4 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 11/89 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIK 56
           V  E C+ C +  CV+ CP D  +              +  +       C   C   A  
Sbjct: 143 VDNERCVGCGY--CVQACPYDARFINHETQTADKCTFCEHRLEAGLLPACVESCVGGARV 200

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKE 85
                      +IN   A    +I   K 
Sbjct: 201 IGDLNDQGS--EINRRMAEHKEDIKVLKP 227


>gi|89896878|ref|YP_520365.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336326|dbj|BAE85921.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 231

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C  C    CV  CP    Y+ +  L   +P++CI C  C   CP + I  + +   
Sbjct: 54  VPTLCNHCDQAACVRACPTKAMYKDDKGLTLHNPNKCIGCKSCMLACPYEVINYNAKEPH 113

Query: 64  ELWLK 68
             W  
Sbjct: 114 GHWRD 118


>gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
 gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
          Length = 596

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+    + +    I  D+CI CG C  +CP  AI 
Sbjct: 542 YIAPDKCKGC--GICAKNCPVNAISGKTKEPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYE 28
            YV+  + CI C    C+E CP    Y+
Sbjct: 570 PYVIDQDKCIKC--GTCIEKCPFGAIYK 595


>gi|197120163|ref|YP_002140590.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
          regulator, FehydlgC/FeS domain-containing protein
          [Geobacter bemidjiensis Bem]
 gi|197089523|gb|ACH40794.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
          regulator, FehydlgC and FeS domain-containing protein
          [Geobacter bemidjiensis Bem]
          Length = 759

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +T++C  C    CV  CPV      +++  I  + CI CG C   CP  A
Sbjct: 7  ITDHCRKCY--SCVRSCPVKAIKVEKSYTEIIAERCIGCGNCMSHCPQHA 54



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID 42
          ++ E CI C   +C+  CP       +N    +      
Sbjct: 35 IIAERCIGC--GNCMSHCPQHAKVIADNVAVTNEHLSSG 71


>gi|331002204|ref|ZP_08325723.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411298|gb|EGG90714.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 393

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M+ VV E  C  C  T CV+ CP D          I    C  CG C   CP DAI  D 
Sbjct: 1   MSVVVIEKDCRGC--TKCVKSCPFDAITMENKKAVI-GIACTSCGTCIEVCPFDAIVKDE 57

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPS-AAKMDGVKQKY 100
               E  L +   Y   W     ++  L   A ++ G  +K 
Sbjct: 58  IEKEENDLTL---YHDIWVFAEQRQGQLQDVALELLGEGKKL 96


>gi|283786991|ref|YP_003366856.1| oxidoreductase [Citrobacter rodentium ICC168]
 gi|282950445|emb|CBG90107.1| putative oxidoreductase [Citrobacter rodentium ICC168]
          Length = 646

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 23/71 (32%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    CV  CP        N + +    CI C  C   CP  AI+          L 
Sbjct: 56  CRHCNDAPCVASCPTQALIFANNSVQLTEALCIGCKNCVIACPFGAIEMVANDDEAPLLA 115

Query: 69  INSEYATQWPN 79
              +   Q P+
Sbjct: 116 QKCDLCNQHPS 126


>gi|168182073|ref|ZP_02616737.1| [Fe] hydrogenase [Clostridium botulinum Bf]
 gi|182674775|gb|EDT86736.1| [Fe] hydrogenase [Clostridium botulinum Bf]
          Length = 497

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       L    +  YA   P+IT +   
Sbjct: 194 CMAACPFGAISDKSYIVNITKLLKERKKVYAVVAPSITGQFGP 236


>gi|167945763|ref|ZP_02532837.1| iron-sulfur cluster-binding protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 164

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY   ++C+ C+   CV VCP    Y+ E+   + +  D+CI C  C   CP    + D 
Sbjct: 66  TYHFPKSCLHCEDPPCVPVCPTGASYKREDNGVVLVDYDKCIGCKYCSWACPYGVREFDE 125

Query: 60  EPG 62
           +  
Sbjct: 126 KER 128


>gi|154495354|ref|ZP_02034359.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
 gi|154085278|gb|EDN84323.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C  C  T C  +CPV+     +     I P  CI CG C   C   AI   
Sbjct: 507 FINPEKCKGC--TLCARMCPVNAITGDKKVPHVIDPQTCIRCGSCIERCKFGAIYVH 561


>gi|323700004|ref|ZP_08111916.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio sp. ND132]
 gi|323459936|gb|EGB15801.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio desulfuricans ND132]
          Length = 249

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
            C+ C++  CV  CP    Y+      + I    CI CG C P CP DA
Sbjct: 61  ACMHCENPTCVTACPTGATYKDPETGVVVIDETLCIGCGNCIPACPYDA 109


>gi|317491443|ref|ZP_07949879.1| dimethylsulfoxide reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920990|gb|EFV42313.1| dimethylsulfoxide reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+  + ++ + CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCSDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNEE 119


>gi|240145814|ref|ZP_04744415.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82]
 gi|257202092|gb|EEV00377.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82]
          Length = 348

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI  
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAH 147



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
           +++    C  C                  C   CPV+     E  +  I  ++CI CG C
Sbjct: 123 SHIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKC 182

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 183 IHSCPFGAI 191


>gi|182419411|ref|ZP_02950663.1| iron-dependent hydrogenase [Clostridium butyricum 5521]
 gi|237666562|ref|ZP_04526547.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376742|gb|EDT74314.1| iron-dependent hydrogenase [Clostridium butyricum 5521]
 gi|237657761|gb|EEP55316.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 495

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C  VC             I   +C +CG+C+  CP DAI  D  P
Sbjct: 104 FEVTDACRNCIAHKCQSVCNFGAISYVNGRAHIDTTKCKECGMCKKACPYDAIAQDMRP 162



 Score = 40.7 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 18/100 (18%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDC--FYEGENFLAIHPDECIDCGV 45
            ++ T  C  C                  C   CP     F + +    I   +CI+CG 
Sbjct: 134 AHIDTTKCKECGMCKKACPYDAIAQDMRPCKRACPTGAINFNKYDLSTEITESKCINCGA 193

Query: 46  CEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTK 83
           C   CP  AI+  +     +   +  N  YA   P IT +
Sbjct: 194 CMASCPFGAIEDKSSIVKIVNELMSDNDIYAVVAPAITGQ 233


>gi|57235074|ref|YP_180863.1| [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit, putative
           [Dehalococcoides ethenogenes 195]
 gi|57225522|gb|AAW40579.1| [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit, putative
           [Dehalococcoides ethenogenes 195]
          Length = 267

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    CV VCPV   ++      +   D+C  C  C+  CP    K + +     
Sbjct: 72  RCLHCYEPACVSVCPVGALHKRPTGAVVWDQDKCFGCRYCQNACPFQIPKFEWDDNWAK 130


>gi|269216297|ref|ZP_06160151.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Slackia
           exigua ATCC 700122]
 gi|269130556|gb|EEZ61634.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Slackia
           exigua ATCC 700122]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C  C++  C +VCP    Y+ E   + I  D+CI C  C   CP +A   +     
Sbjct: 61  VPLACQHCENPACQKVCPTGATYKDEKGRVEIDYDKCIGCRFCMAACPYNARVFNWSEPD 120

Query: 64  EL 65
             
Sbjct: 121 HD 122


>gi|157145832|ref|YP_001453151.1| hypothetical protein CKO_01583 [Citrobacter koseri ATCC BAA-895]
 gi|157083037|gb|ABV12715.1| hypothetical protein CKO_01583 [Citrobacter koseri ATCC BAA-895]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|168822252|ref|ZP_02834252.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197251728|ref|YP_002146655.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204927473|ref|ZP_03218674.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238913210|ref|ZP_04657047.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|197215431|gb|ACH52828.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204322815|gb|EDZ08011.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205341348|gb|EDZ28112.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 244

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|126725238|ref|ZP_01741081.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126706402|gb|EBA05492.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 249

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+  
Sbjct: 81  SCLHCDDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGAREMDQAEGVMK 140


>gi|90409769|ref|ZP_01217786.1| tetrathionate reductase, subunit B [Photobacterium profundum 3TCK]
 gi|90329122|gb|EAS45379.1| tetrathionate reductase, subunit B [Photobacterium profundum 3TCK]
          Length = 262

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV+VCPV   Y+ E+ +  +    C+ C  C   CP DA   + E
Sbjct: 117 CNHCDNPPCVKVCPVQATYQREDGIVMVDNKRCVACAYCVQACPYDARFINDE 169


>gi|16760525|ref|NP_456142.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764735|ref|NP_460350.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29141714|ref|NP_805056.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|207857109|ref|YP_002243760.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584104|ref|YP_002637902.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|4456871|emb|CAB37414.1| tetrathionate reductase subunit B (TtrB) [Salmonella typhimurium]
 gi|11139591|gb|AAG31757.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16419905|gb|AAL20309.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16502821|emb|CAD01980.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137342|gb|AAO68905.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|206708912|emb|CAR33242.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468631|gb|ACN46461.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246591|emb|CBG24401.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993272|gb|ACY88157.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157920|emb|CBW17415.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|323129656|gb|ADX17086.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326623491|gb|EGE29836.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332988272|gb|AEF07255.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 250

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 106 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 158


>gi|323484215|ref|ZP_08089584.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum
           WAL-14163]
 gi|323692097|ref|ZP_08106344.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323402457|gb|EGA94786.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum
           WAL-14163]
 gi|323503897|gb|EGB19712.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 368

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V+T+ CI C    C   C  D     E   +I PD+C  CG C   CPVDA+    + 
Sbjct: 190 PFVLTDKCIGC--GACKRNCAHDAISIAEKKASIAPDKCAGCGRCIGVCPVDAVANHCDE 247

Query: 62  GLELWLKINSEYATQ 76
             ++   +N + A  
Sbjct: 248 SNDI---LNKKIAEY 259


>gi|321224391|gb|EFX49454.1| Respiratory nitrate reductase beta chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 747

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|315652760|ref|ZP_07905734.1| electron transfer flavoprotein alpha subunit [Eubacterium saburreum
           DSM 3986]
 gi|315484962|gb|EFU75370.1| electron transfer flavoprotein alpha subunit [Eubacterium saburreum
           DSM 3986]
          Length = 393

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M+ VV E  C  C  T CV+ CP D          I    C  CG C   CP DAI  D 
Sbjct: 1   MSVVVIEKDCRGC--TKCVKSCPFDAITMENKKAVI-GIACTSCGTCIEVCPFDAIVKDE 57

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPS-AAKMDGVKQKY 100
               E  L +   Y   W     ++  L   A ++ G  +K 
Sbjct: 58  IEKEENDLTL---YHDIWVFAEQRQGQLQDVALELLGEGKKL 96


>gi|217974827|ref|YP_002359578.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217499962|gb|ACK48155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 260

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    ++ ++  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|160899678|ref|YP_001565260.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160365262|gb|ABX36875.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Delftia
           acidovorans SPH-1]
          Length = 281

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++  + +  +  + C+ CG C   CP DA   + E
Sbjct: 137 CNHCDNPPCVPVCPVQATFQRSDGIVLVDNERCVGCGYCVQACPYDARFINHE 189



 Score = 34.2 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDA-I 55
           V  E C+ C +  CV+ CP D  +              +  +       C   C   A +
Sbjct: 164 VDNERCVGCGY--CVQACPYDARFINHETQTADKCTFCEHRLEAGLLPACVESCVGGARV 221

Query: 56  KPDTEPGLELWLKINSEYATQWPNI 80
             D         +   E+A     +
Sbjct: 222 IGDLNDEGSEIRQRMREHAKDLKVL 246


>gi|78043167|ref|YP_360674.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995282|gb|ABB14181.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 213

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT-EPG 62
           +   C+ C    CV+VCPV   Y+ EN +  I  D CI C  C   CP  A   D  E  
Sbjct: 57  IPRPCMQCDRPACVQVCPVKATYKMENGIVAIDYDRCIGCRYCVVSCPYGARSFDFGEDY 116

Query: 63  LELWLKINS 71
               +  N 
Sbjct: 117 SREMIGYNE 125


>gi|16128862|ref|NP_415415.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. MG1655]
 gi|30062382|ref|NP_836553.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 2457T]
 gi|74311453|ref|YP_309872.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella sonnei
           Ss046]
 gi|89107745|ref|AP_001525.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. W3110]
 gi|91209998|ref|YP_539984.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           UTI89]
 gi|110804895|ref|YP_688415.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           5 str. 8401]
 gi|117623079|ref|YP_851992.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           APEC O1]
 gi|157158279|ref|YP_001462093.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|157160418|ref|YP_001457736.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|170020703|ref|YP_001725657.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|170080553|ref|YP_001729873.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170769322|ref|ZP_02903775.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|187732026|ref|YP_001880908.1| dimethylsulfoxide reductase, B subunit [Shigella boydii CDC
           3083-94]
 gi|188494050|ref|ZP_03001320.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|191167581|ref|ZP_03029392.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|193064681|ref|ZP_03045760.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|193070738|ref|ZP_03051673.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194428398|ref|ZP_03060939.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194435161|ref|ZP_03067394.1| dimethylsulfoxide reductase, B subunit [Shigella dysenteriae 1012]
 gi|194438684|ref|ZP_03070771.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|209918144|ref|YP_002292228.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE11]
 gi|218553481|ref|YP_002386394.1| dimethyl sulfoxide reductase, anaerobic subunit B [Escherichia coli
           IAI1]
 gi|218557803|ref|YP_002390716.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli S88]
 gi|218688738|ref|YP_002396950.1| dimethyl sulfoxide reductase, anaerobic subunit B [Escherichia coli
           ED1a]
 gi|218694368|ref|YP_002402035.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli 55989]
 gi|218704324|ref|YP_002411843.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli UMN026]
 gi|237707115|ref|ZP_04537596.1| dimethylsulfoxide reductase [Escherichia sp. 3_2_53FAA]
 gi|238900153|ref|YP_002925949.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BW2952]
 gi|253774076|ref|YP_003036907.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161009|ref|YP_003044117.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli B str. REL606]
 gi|256020977|ref|ZP_05434842.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Shigella sp.
           D9]
 gi|256023404|ref|ZP_05437269.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia sp.
           4_1_40B]
 gi|260843145|ref|YP_003220923.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O103:H2 str. 12009]
 gi|260854186|ref|YP_003228077.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O26:H11 str. 11368]
 gi|260867067|ref|YP_003233469.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O111:H- str. 11128]
 gi|291281898|ref|YP_003498716.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. CB9615]
 gi|293409273|ref|ZP_06652849.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414177|ref|ZP_06656826.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|293433192|ref|ZP_06661620.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           B088]
 gi|298379983|ref|ZP_06989588.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           FVEC1302]
 gi|300817003|ref|ZP_07097222.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 107-1]
 gi|300823634|ref|ZP_07103761.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 119-7]
 gi|300901678|ref|ZP_07119736.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 198-1]
 gi|300902948|ref|ZP_07120892.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 84-1]
 gi|300921071|ref|ZP_07137455.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 115-1]
 gi|300926533|ref|ZP_07142322.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 182-1]
 gi|300929588|ref|ZP_07145051.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 187-1]
 gi|300937611|ref|ZP_07152420.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 21-1]
 gi|300949745|ref|ZP_07163722.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 116-1]
 gi|300954718|ref|ZP_07167153.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 175-1]
 gi|301022880|ref|ZP_07186713.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 69-1]
 gi|301024414|ref|ZP_07188099.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|301302498|ref|ZP_07208629.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 124-1]
 gi|301325782|ref|ZP_07219230.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 78-1]
 gi|301646340|ref|ZP_07246228.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|306812649|ref|ZP_07446842.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           NC101]
 gi|307137523|ref|ZP_07496879.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           H736]
 gi|307311718|ref|ZP_07591358.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|309795296|ref|ZP_07689714.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 145-7]
 gi|312971022|ref|ZP_07785201.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|331641416|ref|ZP_08342551.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331662310|ref|ZP_08363233.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331667269|ref|ZP_08368134.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331672436|ref|ZP_08373226.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA280]
 gi|331676681|ref|ZP_08377377.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331682404|ref|ZP_08383023.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332282202|ref|ZP_08394615.1| dimethyl sulfoxide reductase [Shigella sp. D9]
 gi|2506394|sp|P18776|DMSB_ECOLI RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|1651422|dbj|BAA35627.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K12 substr. W3110]
 gi|1787122|gb|AAC73981.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. MG1655]
 gi|30040628|gb|AAP16359.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 2457T]
 gi|73854930|gb|AAZ87637.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella sonnei
           Ss046]
 gi|91071572|gb|ABE06453.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           UTI89]
 gi|110614443|gb|ABF03110.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           5 str. 8401]
 gi|115512203|gb|ABJ00278.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           APEC O1]
 gi|157066098|gb|ABV05353.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|157080309|gb|ABV20017.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|169755631|gb|ACA78330.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|169888388|gb|ACB02095.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170121974|gb|EDS90905.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|187429018|gb|ACD08292.1| dimethylsulfoxide reductase, B subunit [Shigella boydii CDC
           3083-94]
 gi|188489249|gb|EDU64352.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|190902342|gb|EDV62080.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|192927738|gb|EDV82353.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|192955931|gb|EDV86399.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194413613|gb|EDX29894.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194416599|gb|EDX32735.1| dimethylsulfoxide reductase, B subunit [Shigella dysenteriae 1012]
 gi|194422316|gb|EDX38316.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|209775004|gb|ACI85814.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209911403|dbj|BAG76477.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE11]
 gi|218351100|emb|CAU96804.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli 55989]
 gi|218360249|emb|CAQ97799.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli IAI1]
 gi|218364572|emb|CAR02258.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli S88]
 gi|218426302|emb|CAR07127.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli ED1a]
 gi|218431421|emb|CAR12299.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli UMN026]
 gi|222032629|emb|CAP75368.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           LF82]
 gi|226898325|gb|EEH84584.1| dimethylsulfoxide reductase [Escherichia sp. 3_2_53FAA]
 gi|238860773|gb|ACR62771.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BW2952]
 gi|242376710|emb|CAQ31423.1| dimethyl sulfoxide reductase, chain B, subunit of dimethyl
           sulfoxide reductase [Escherichia coli BL21(DE3)]
 gi|253325120|gb|ACT29722.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972910|gb|ACT38581.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli B str. REL606]
 gi|253977124|gb|ACT42794.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BL21(DE3)]
 gi|257752835|dbj|BAI24337.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O26:H11 str. 11368]
 gi|257758292|dbj|BAI29789.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O103:H2 str. 12009]
 gi|257763423|dbj|BAI34918.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O111:H- str. 11128]
 gi|260449959|gb|ACX40381.1| dimethylsulfoxide reductase, chain B [Escherichia coli DH1]
 gi|281178029|dbj|BAI54359.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE15]
 gi|281600223|gb|ADA73207.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           2002017]
 gi|290761771|gb|ADD55732.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324011|gb|EFE63433.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           B088]
 gi|291434235|gb|EFF07208.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|291469741|gb|EFF12225.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491373|gb|ADE90129.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           IHE3034]
 gi|298279681|gb|EFI21189.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           FVEC1302]
 gi|299880386|gb|EFI88597.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|300318329|gb|EFJ68113.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 175-1]
 gi|300354902|gb|EFJ70772.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 198-1]
 gi|300397342|gb|EFJ80880.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 69-1]
 gi|300405009|gb|EFJ88547.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 84-1]
 gi|300411922|gb|EFJ95232.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 115-1]
 gi|300417450|gb|EFK00761.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 182-1]
 gi|300450859|gb|EFK14479.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 116-1]
 gi|300457341|gb|EFK20834.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 21-1]
 gi|300462476|gb|EFK25969.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 187-1]
 gi|300523834|gb|EFK44903.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 119-7]
 gi|300530355|gb|EFK51417.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 107-1]
 gi|300842337|gb|EFK70097.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 124-1]
 gi|300847425|gb|EFK75185.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 78-1]
 gi|301075443|gb|EFK90249.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|305853412|gb|EFM53851.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           NC101]
 gi|306908273|gb|EFN38772.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|307627675|gb|ADN71979.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           UM146]
 gi|308120946|gb|EFO58208.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 145-7]
 gi|309701171|emb|CBJ00471.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           ETEC H10407]
 gi|310336783|gb|EFQ01950.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|312945418|gb|ADR26245.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|313650193|gb|EFS14605.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2a str.
           2457T]
 gi|315060180|gb|ADT74507.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli W]
 gi|315135543|dbj|BAJ42702.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           DH1]
 gi|315257935|gb|EFU37903.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 85-1]
 gi|315287518|gb|EFU46929.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 110-3]
 gi|315296137|gb|EFU55446.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 16-3]
 gi|315619207|gb|EFU99786.1| dimethylsulfoxide reductase, chain B [Escherichia coli 3431]
 gi|320175336|gb|EFW50442.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella
           dysenteriae CDC 74-1112]
 gi|320202290|gb|EFW76861.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           EC4100B]
 gi|320654184|gb|EFX22252.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659808|gb|EFX27364.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|323157219|gb|EFZ43342.1| dimethylsulfoxide reductase, chain B [Escherichia coli EPECa14]
 gi|323159520|gb|EFZ45500.1| dimethylsulfoxide reductase, chain B [Escherichia coli E128010]
 gi|323165356|gb|EFZ51143.1| dimethylsulfoxide reductase, chain B [Shigella sonnei 53G]
 gi|323175008|gb|EFZ60623.1| dimethylsulfoxide reductase, chain B [Escherichia coli LT-68]
 gi|323175483|gb|EFZ61078.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1180]
 gi|323185399|gb|EFZ70763.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1357]
 gi|323379263|gb|ADX51531.1| dimethylsulfoxide reductase, chain B [Escherichia coli KO11]
 gi|323938001|gb|EGB34263.1| dimethylsulfoxide reductase [Escherichia coli E1520]
 gi|323942811|gb|EGB38976.1| dimethylsulfoxide reductase [Escherichia coli E482]
 gi|323947316|gb|EGB43324.1| dimethylsulfoxide reductase [Escherichia coli H120]
 gi|323953395|gb|EGB49261.1| dimethylsulfoxide reductase [Escherichia coli H252]
 gi|323958202|gb|EGB53911.1| dimethylsulfoxide reductase [Escherichia coli H263]
 gi|323962943|gb|EGB58516.1| dimethylsulfoxide reductase [Escherichia coli H489]
 gi|323967142|gb|EGB62566.1| dimethylsulfoxide reductase [Escherichia coli M863]
 gi|323973232|gb|EGB68424.1| dimethylsulfoxide reductase [Escherichia coli TA007]
 gi|323976718|gb|EGB71806.1| dimethylsulfoxide reductase [Escherichia coli TW10509]
 gi|324009810|gb|EGB79029.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 57-2]
 gi|324019014|gb|EGB88233.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 117-3]
 gi|324116108|gb|EGC10032.1| dimethylsulfoxide reductase [Escherichia coli E1167]
 gi|327253683|gb|EGE65312.1| dimethylsulfoxide reductase, chain B [Escherichia coli STEC_7v]
 gi|331038214|gb|EGI10434.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331060732|gb|EGI32696.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331065625|gb|EGI37518.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331070342|gb|EGI41707.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA280]
 gi|331075370|gb|EGI46668.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331080035|gb|EGI51214.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332091030|gb|EGI96120.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 155-74]
 gi|332104554|gb|EGJ07900.1| dimethyl sulfoxide reductase [Shigella sp. D9]
 gi|332342337|gb|AEE55671.1| dimethylsulfoxide reductase DmsB [Escherichia coli UMNK88]
 gi|332759810|gb|EGJ90113.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 4343-70]
 gi|332760458|gb|EGJ90747.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2747-71]
 gi|332768073|gb|EGJ98259.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2930-71]
 gi|333006981|gb|EGK26476.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-218]
 gi|333021020|gb|EGK40278.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-304]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|237796742|ref|YP_002864294.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
 gi|229262438|gb|ACQ53471.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
          Length = 497

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 41.5 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       L    +  YA   P IT +   
Sbjct: 194 CMAACPFGAISDKSYIVNITKLLKERKKVYAVVAPAITGQFGP 236


>gi|149912662|ref|ZP_01901196.1| iron-sulfur cluster-binding protein [Roseobacter sp. AzwK-3b]
 gi|149813068|gb|EDM72894.1| iron-sulfur cluster-binding protein [Roseobacter sp. AzwK-3b]
          Length = 259

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDAAEGVMK 140


>gi|73748066|ref|YP_307305.1| putative Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit
           [Dehalococcoides sp. CBDB1]
 gi|147668904|ref|YP_001213722.1| formate dehydrogenase beta subunit [Dehalococcoides sp. BAV1]
 gi|289432093|ref|YP_003461966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
 gi|73659782|emb|CAI82389.1| putative Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit
           [Dehalococcoides sp. CBDB1]
 gi|146269852|gb|ABQ16844.1| formate dehydrogenase beta subunit [Dehalococcoides sp. BAV1]
 gi|288945813|gb|ADC73510.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
          Length = 267

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    CV VCPV   ++  N   +   D+C  C  C+  CP +  K + +     
Sbjct: 72  RCLHCYEPACVSVCPVGALHKRPNGAVVWDQDKCFGCRYCQNACPFEIPKFEWDDNWAK 130


>gi|330506329|ref|YP_004382757.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927137|gb|AEB66939.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 368

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C+   C + CP       +    I    C  CG C   CP  A+  D    +  +
Sbjct: 193 ELCEGCR--ACADGCPNQAITVKKKITQIDYSLCTGCGKCLRLCPAHALDFDWIVEVPPF 250

Query: 67  LKINSEYA 74
           ++   EYA
Sbjct: 251 MERMVEYA 258


>gi|310642487|ref|YP_003947245.1| glutamate synthase family, small subunit, putative [Paenibacillus
           polymyxa SC2]
 gi|309247437|gb|ADO57004.1| Glutamate synthase family, small subunit, putative [Paenibacillus
           polymyxa SC2]
          Length = 209

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C++  C   CPV    + +  + I  D CI C  C   CP  AI
Sbjct: 81  VPVQCRHCENAPCAHACPVQAIRQEDGVVMIDEDRCIGCTSCVLACPFGAI 131


>gi|126733437|ref|ZP_01749184.1| 4Fe-4S binding domain protein [Roseobacter sp. CCS2]
 gi|126716303|gb|EBA13167.1| 4Fe-4S binding domain protein [Roseobacter sp. CCS2]
          Length = 253

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D + G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRAEDGIVLVNESDCIGCGLCAWACPYGARELDAKEGVMK 140


>gi|24112270|ref|NP_706780.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 301]
 gi|33301071|sp|Q83RZ7|DMSB_SHIFL RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|24051122|gb|AAN42487.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 301]
          Length = 205

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|298675109|ref|YP_003726859.1| nitrite and sulphite reductase [Methanohalobium evestigatum Z-7303]
 gi|298288097|gb|ADI74063.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium
           evestigatum Z-7303]
          Length = 644

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E C  C    C E+C ++          I  D CI+CG C   CP +    + + G 
Sbjct: 514 IDEEKCTGC--GRCSELCKLNAISIVAGKAVIDRDLCINCGWCVRGCPHEG-AVEDKTGY 570

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF---SPNPGGK 111
            +W+  N         I  K+       +M  +  K  K F      PG +
Sbjct: 571 SIWIGGNDAR-RPTNGILLKEFCTED--EMVSIIDKLGKVFVKYRTKPGKE 618


>gi|121534032|ref|ZP_01665858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
 gi|121307543|gb|EAX48459.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            V  + CI C    C +VCP +     E    I  + C  CG C   CPV AI  +
Sbjct: 8  PVVDKDKCIGC--GVCSKVCPAETITIKERKAEIDLNNCRGCGACNQRCPVYAITME 62


>gi|62179976|ref|YP_216393.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614201|ref|YP_001588166.1| hypothetical protein SPAB_01943 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551649|ref|ZP_02345403.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167995015|ref|ZP_02576105.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168240895|ref|ZP_02665827.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168463207|ref|ZP_02697138.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194447767|ref|YP_002045390.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|198245067|ref|YP_002215743.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389577|ref|ZP_03216188.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213161804|ref|ZP_03347514.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428559|ref|ZP_03361309.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213583929|ref|ZP_03365755.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647222|ref|ZP_03377275.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854959|ref|ZP_03383199.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827395|ref|ZP_06546007.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|62127609|gb|AAX65312.1| Tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161363565|gb|ABX67333.1| hypothetical protein SPAB_01943 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406071|gb|ACF66290.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195634294|gb|EDX52646.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197939583|gb|ACH76916.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602022|gb|EDZ00568.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205323655|gb|EDZ11494.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327218|gb|EDZ13982.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205339348|gb|EDZ26112.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|312912370|dbj|BAJ36344.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224011|gb|EFX49074.1| Tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322714443|gb|EFZ06014.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 244

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|320196609|gb|EFW71232.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           WV_060327]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|302669638|ref|YP_003829598.1| ferredoxin [Butyrivibrio proteoclasticus B316]
 gi|302394111|gb|ADL33016.1| ferredoxin [Butyrivibrio proteoclasticus B316]
          Length = 56

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+++ CI C    C   CPV    +G+    I  + CIDCG C  +CPV AI
Sbjct: 1  MAYVISDGCISC--GSCAAQCPVSAISQGDTQYVIDANTCIDCGSCAAQCPVSAI 53


>gi|302388962|ref|YP_003824783.1| BFD domain protein (2Fe-2S)-binding domain protein
          [Thermosediminibacter oceani DSM 16646]
 gi|302199590|gb|ADL07160.1| BFD domain protein (2Fe-2S)-binding domain protein
          [Thermosediminibacter oceani DSM 16646]
          Length = 204

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            V  E C  CK   C +VCPV      +    +  ++C  C  CE  CP  AI  
Sbjct: 8  AVVDEEKCRGCK--TCEKVCPVLAIKMVDRKAKVDEEKCRGCAACEQRCPFYAISM 61


>gi|331651914|ref|ZP_08352933.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|331050192|gb|EGI22250.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|218700587|ref|YP_002408216.1| dimethyl sulfoxide reductase subunit B [Escherichia coli IAI39]
 gi|218370573|emb|CAR18380.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli IAI39]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|215486024|ref|YP_002328455.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312969037|ref|ZP_07783244.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|215264096|emb|CAS08439.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312286439|gb|EFR14352.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQFNE 118


>gi|56413983|ref|YP_151058.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197362906|ref|YP_002142543.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56128240|gb|AAV77746.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094383|emb|CAR59898.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|238795930|ref|ZP_04639442.1| hypothetical protein ymoll0001_23270 [Yersinia mollaretii ATCC
           43969]
 gi|238720135|gb|EEQ11939.1| hypothetical protein ymoll0001_23270 [Yersinia mollaretii ATCC
           43969]
          Length = 533

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    Y  +    I   PD C+ C  C   CP  
Sbjct: 80  SCQHCDHAPCVDVCPTGASYRDKATGIIDVNPDLCVGCQYCIAACPYR 127


>gi|227871720|ref|ZP_03990129.1| ferredoxin hydrogenase [Oribacterium sinus F0268]
 gi|227842429|gb|EEJ52650.1| ferredoxin hydrogenase [Oribacterium sinus F0268]
          Length = 488

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y VT+NC LC    C   C        +    I P +C +CG+C   CP  AI
Sbjct: 95  SYSVTDNCRLCLGKACQNSCHFGAITMTDQRAHIDPMKCKECGMCATACPYSAI 148



 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++    C  C                  C + CPV+     EN L  I  + CI CG C
Sbjct: 126 AHIDPMKCKECGMCATACPYSAIAQLTRPCKKPCPVNAITYDENGLCVIDDNRCIRCGQC 185

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 186 VHSCPFGAI 194


>gi|186470986|ref|YP_001862304.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia phymatum STM815]
 gi|184197295|gb|ACC75258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phymatum STM815]
          Length = 246

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y+   +  + +  D CI C  C   CP  A + D E
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDYDRCIGCKYCSWACPYGAREIDEE 126


>gi|261867201|ref|YP_003255123.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412533|gb|ACX81904.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 207

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP     +  +   I + + CI C  C   CP DA + D E
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMQKNADGFVIVNEEICIGCRYCHMACPYDAPQFDAE 119


>gi|271502701|ref|YP_003335727.1| glutamate synthase small subunit [Dickeya dadantii Ech586]
 gi|270346256|gb|ACZ79021.1| glutamate synthase, small subunit [Dickeya dadantii Ech586]
          Length = 667

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+ + C +VCP       ++ + +  ++CI C  C   CP  AI  +
Sbjct: 56  CRHCEDSPCAKVCPTQALVRKQDGIQLIAEKCIGCKTCVLACPFGAISVE 105



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPD-ECID---CGVCEPECPVDAIKPD 58
           + E CI CK   CV  CP             + H    CI       C   CP  A+   
Sbjct: 83  IAEKCIGCK--TCVLACPFGAISVENQAQGASAHKCDLCIGRPEGQACVEACPTQALHLV 140

Query: 59  TEPGLEL 65
           +E  LE 
Sbjct: 141 SERSLEE 147


>gi|257065442|ref|YP_003145114.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793095|gb|ACV23765.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C++  C +VCP    Y+ E   + I   +CI C +C   CP +A   + 
Sbjct: 64  ACQHCENPACQKVCPTGATYKDEMGRVEIDYQKCIGCRMCMAACPFNARVFNW 116


>gi|170758777|ref|YP_001788618.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405766|gb|ACA54177.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
          Length = 497

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 38/119 (31%), Gaps = 21/119 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPEDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYEK 102
           C   CP  AI   +       L    +  YA   P IT +       AK+  VK    K
Sbjct: 194 CMAACPFGAISDKSYIVNIAKLLKEKKKVYAVVAPAITGQFGP---QAKVGQVKNALTK 249


>gi|15800758|ref|NP_286772.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 EDL933]
 gi|15830234|ref|NP_309007.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. Sakai]
 gi|168752123|ref|ZP_02777145.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168756986|ref|ZP_02781993.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168762971|ref|ZP_02787978.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168769888|ref|ZP_02794895.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168776254|ref|ZP_02801261.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168783805|ref|ZP_02808812.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787323|ref|ZP_02812330.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168801423|ref|ZP_02826430.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|195939558|ref|ZP_03084940.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808514|ref|ZP_03250851.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815388|ref|ZP_03256567.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822781|ref|ZP_03263100.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399354|ref|YP_002269568.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325565|ref|ZP_03441649.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254792095|ref|YP_003076932.1| dimethyl sulfoxide reductase subunit B [Escherichia coli O157:H7
           str. TW14359]
 gi|261227400|ref|ZP_05941681.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256177|ref|ZP_05948710.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. FRIK966]
 gi|12514060|gb|AAG55382.1|AE005279_2 anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. EDL933]
 gi|13360439|dbj|BAB34403.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768357|gb|EDU32201.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188013963|gb|EDU52085.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188998922|gb|EDU67908.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189355906|gb|EDU74325.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189361185|gb|EDU79604.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189366789|gb|EDU85205.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372640|gb|EDU91056.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189376436|gb|EDU94852.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|208728315|gb|EDZ77916.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732036|gb|EDZ80724.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738266|gb|EDZ85949.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160754|gb|ACI38187.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209774998|gb|ACI85811.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775000|gb|ACI85812.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775002|gb|ACI85813.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775006|gb|ACI85815.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|217321786|gb|EEC30210.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254591495|gb|ACT70856.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. TW14359]
 gi|320192618|gb|EFW67259.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320637765|gb|EFX07557.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. G5101]
 gi|320642889|gb|EFX12090.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H- str. 493-89]
 gi|320648346|gb|EFX17001.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H- str. H 2687]
 gi|320664277|gb|EFX31428.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326338209|gb|EGD62038.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|326346186|gb|EGD69924.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|313672609|ref|YP_004050720.1| tetrathionate reductase beta subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939365|gb|ADR18557.1| tetrathionate reductase beta subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 217

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
            V   C  C++  CV+ CPV+  Y+G +  + I  + CI CG C   CP +A   D
Sbjct: 87  FVPIQCNHCENPPCVKPCPVNATYKGPDGLVVIDDNVCIGCGKCVKACPYNARFLD 142


>gi|168179051|ref|ZP_02613715.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
 gi|182670135|gb|EDT82111.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
          Length = 497

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 41.1 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       L    +  YA   P IT +   
Sbjct: 194 CMAACPFGAISDKSYIVNIAKLLKEKKKVYAVVAPAITGQFGP 236


>gi|83590232|ref|YP_430241.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573146|gb|ABC19698.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 195

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   CV+ CP     +   +  + +  ++CI C  C   CP  A + 
Sbjct: 61  AYWISLSCNHCQDPPCVKNCPTGAMQKRPEDGIVFVDQNKCIGCRYCVWSCPYGAPQY 118


>gi|296132288|ref|YP_003639535.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296030866|gb|ADG81634.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 297

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V   C+ C    CV VCP    ++ E+ +  I  D CI C  C   CP  AI  + + 
Sbjct: 102 YKVKMQCMHCNEPSCVAVCPTGAAFKREDGIVLIDGDVCIACRNCVVACPY-AIPGENKE 160


>gi|322421699|ref|YP_004200922.1| Fis family sigma-54 specific transcriptional regulator [Geobacter
          sp. M18]
 gi|320128086|gb|ADW15646.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. M18]
          Length = 760

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +T+ C  C    CV  CPV      +++  I  + CI CG C   CP  A
Sbjct: 7  ITDQCRKCY--SCVRSCPVKAIKVEKSYTEIIFERCIGCGNCLSNCPQHA 54


>gi|194442787|ref|YP_002040746.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194401450|gb|ACF61672.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|120600302|ref|YP_964876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560395|gb|ABM26322.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 260

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    ++ ++  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|226950727|ref|YP_002805818.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|226844550|gb|ACO87216.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|322807610|emb|CBZ05185.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065]
          Length = 497

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 40.7 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAI 55
           C   CP  AI
Sbjct: 194 CMAACPFGAI 203


>gi|170756783|ref|YP_001782925.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
 gi|169121995|gb|ACA45831.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
          Length = 497

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       L    +  YA   P IT +   
Sbjct: 194 CMASCPFGAISDKSYIVNIAKLLKEKKKVYAVVAPAITGQFGP 236


>gi|153938019|ref|YP_001392647.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|152933915|gb|ABS39413.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|295320632|gb|ADG01010.1| [Fe] hydrogenase [Clostridium botulinum F str. 230613]
          Length = 497

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 41.1 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       L    +  YA   P IT +   
Sbjct: 194 CMAACPFGAISDKSYIVNIAKLLKEKKKVYAVVAPAITGQFGP 236


>gi|153932223|ref|YP_001385620.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|153936790|ref|YP_001389026.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
 gi|152928267|gb|ABS33767.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|152932704|gb|ABS38203.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
          Length = 497

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 41.1 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       L    +  YA   P IT +   
Sbjct: 194 CMAACPFGAISDKSYIVNIAKLLKEKKKVYAVVAPAITGQFGP 236


>gi|78044498|ref|YP_360900.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996613|gb|ABB15512.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 228

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C +C++  CV+VCPV   Y  +     +  + CI C  C   CP    + + E 
Sbjct: 58  YFLPVACQMCENAPCVKVCPVGATYTDDKGRVLVDYERCIGCRYCMTACPYGVRQFNWED 117

Query: 62  GLEL 65
             + 
Sbjct: 118 PKKA 121


>gi|126172840|ref|YP_001048989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125996045|gb|ABN60120.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 260

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C+   C+ VCP    ++ ++  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCEKPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|320086134|emb|CBY95908.1| Uncharacterized ferredoxin-like protein ydhX [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 244

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|257790220|ref|YP_003180826.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830340|ref|ZP_08163797.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|257474117|gb|ACV54437.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487807|gb|EGC90245.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 215

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           +   C+ C++  CV VCPV   Y G++  + I  D CI C  C   CP  A   D 
Sbjct: 59  IPRPCMQCENPACVSVCPVSATYRGDDGIVVIDADRCIGCKYCIAACPYGARSADE 114


>gi|257791615|ref|YP_003182221.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257475512|gb|ACV55832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 206

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C++  C++VCPV   Y+ +   + IH D+CI C +C   CP +A   +     
Sbjct: 61  IPVACQHCENPACLKVCPVGATYKDDMGRVEIHYDKCIGCRICMAACPYNARVFNWNEPE 120

Query: 64  EL 65
             
Sbjct: 121 RD 122


>gi|148381245|ref|YP_001255786.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|148290729|emb|CAL84860.1| putative iron-dependent hydrogenase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 498

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 105 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAI 157



 Score = 41.1 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C +VCP         +    I  + CI+CG 
Sbjct: 135 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGA 194

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       L    +  YA   P IT +   
Sbjct: 195 CMAACPFGAISDKSYIVNIAKLLKEKKKVYAVVAPAITGQFGP 237


>gi|240948525|ref|ZP_04752898.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           minor NM305]
 gi|240297033|gb|EER47604.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           minor NM305]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++ E+   I + + CI C  C   CP DA + D
Sbjct: 60  AYYLSISCNHCSDPACTKVCPTGAMHKNEDGFVIVNEEICIGCRYCHMACPYDAPQYD 117


>gi|197285542|ref|YP_002151414.1| tetrathionate reductase subunit B [Proteus mirabilis HI4320]
 gi|227356037|ref|ZP_03840428.1| tetrathionate reductase subunit B [Proteus mirabilis ATCC 29906]
 gi|194683029|emb|CAR43509.1| tetrathionate reductase subunit B [Proteus mirabilis HI4320]
 gi|227163814|gb|EEI48722.1| tetrathionate reductase subunit B [Proteus mirabilis ATCC 29906]
          Length = 246

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C    CV VCPV   ++ ++  + I  + C+ C  C   CP DA
Sbjct: 100 CNHCDEPPCVPVCPVQATFQRKDGIVVIDNERCVGCAYCVQACPYDA 146


>gi|157375933|ref|YP_001474533.1| aspartate carbamoyltransferase [Shewanella sediminis HAW-EB3]
 gi|157318307|gb|ABV37405.1| aspartate carbamoyltransferase [Shewanella sediminis HAW-EB3]
          Length = 686

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C    C++ CP   + +  E    +  P+ C  CG C   CP +A + D
Sbjct: 160 ISMACNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLD 215


>gi|238787390|ref|ZP_04631189.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238724652|gb|EEQ16293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
            ++ +C  C    C++VCP + + +  + + +   D+CI C +C   CP +A   D + 
Sbjct: 52  FISMSCNHCDDPQCMKVCPANTYSKRPDGIVVQDHDKCIGCRMCIMACPYNAPVFDPQE 110


>gi|311280192|ref|YP_003942423.1| dimethylsulfoxide reductase, chain B [Enterobacter cloacae SCF1]
 gi|311280195|ref|YP_003942426.1| dimethylsulfoxide reductase, chain B [Enterobacter cloacae SCF1]
 gi|308749387|gb|ADO49139.1| dimethylsulfoxide reductase, chain B [Enterobacter cloacae SCF1]
 gi|308749390|gb|ADO49142.1| dimethylsulfoxide reductase, chain B [Enterobacter cloacae SCF1]
          Length = 205

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|264678371|ref|YP_003278278.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|262208884|gb|ACY32982.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
          Length = 241

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV VCPV   ++  + +  +  + C+ CG C   CP DA   + E
Sbjct: 96  CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHE 148



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 18/89 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIK 56
           V  E C+ C +  CV+ CP D  +              +  +       C   C   A  
Sbjct: 123 VDNERCVGCGY--CVQACPYDARFINHETQTADKCTFCEHRLEAGLLPACVESCVGGARV 180

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKE 85
                       +N  ++     I   K+
Sbjct: 181 IGD---------LNDAHSEINLRINAHKD 200


>gi|296136911|ref|YP_003644153.1| nitrate reductase, beta subunit [Thiomonas intermedia K12]
 gi|295797033|gb|ADG31823.1| nitrate reductase, beta subunit [Thiomonas intermedia K12]
          Length = 507

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISACPYKKIYYN 234

Query: 59  TE 60
            E
Sbjct: 235 WE 236


>gi|256544643|ref|ZP_05472015.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256399532|gb|EEU13137.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 489

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 23/53 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI  
Sbjct: 102 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVEACPYNAIAH 154



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 19/74 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    CVE CP +     +                     I  D+C+ CG C
Sbjct: 132 IDQDKCIKC--GKCVEACPYNAIAHTKRPCAESCGVKAIKSDKLGRAEIDDDKCVACGRC 189

Query: 47  EPECPVDAIKPDTE 60
              CP  AI   TE
Sbjct: 190 ITACPFGAISDKTE 203


>gi|296137471|ref|YP_003644713.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295797593|gb|ADG32383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 311

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   C+EVCP    ++ ++ +  I  D C  CG C   CP DA
Sbjct: 149 CNHCERPSCIEVCPAGATWQRKDGIVEIDYDLCWGCGACVNACPYDA 195


>gi|255528595|ref|ZP_05395364.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|255507710|gb|EET84181.1| nitroreductase [Clostridium carboxidivorans P7]
          Length = 273

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V TE C+ C    CV+ C        +N   I+   C  CG C   CP  AI  D E
Sbjct: 1  MMKVDTEKCVGC--GLCVKDCFPKDIEMVDNKAKINNVTCFKCGHCIAVCPKAAITTD-E 57

Query: 61 PGLELWLKINSE 72
            +E   + N E
Sbjct: 58 YNMEDVKEYNKE 69


>gi|319790198|ref|YP_004151831.1| molybdopterin dinucleotide-binding region protein [Thermovibrio
           ammonificans HB-1]
 gi|317114700|gb|ADU97190.1| molybdopterin dinucleotide-binding region protein [Thermovibrio
           ammonificans HB-1]
          Length = 1172

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV  CP +    G    + I   +C  C  C P CP +AI  D
Sbjct: 90  CKQCFEHPCVSACPFNAISVGRGGVVVIDDSKCTGCEKCVPACPFNAIVMD 140


>gi|256828088|ref|YP_003156816.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577264|gb|ACU88400.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 264

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCP    ++ E+ +  +    CI C  C   CP  +   + +       
Sbjct: 127 CNHCDNPPCVRVCPTKATFQREDGIVMMDFHRCIGCRYCMAGCPYGSRSFNFKDPRPFIE 186

Query: 68  KINSEYATQWPNITTKKE 85
           K++ +Y T+   +  K E
Sbjct: 187 KVDLDYPTRTKGVVEKCE 204


>gi|217077037|ref|YP_002334753.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosipho africanus TCF52B]
 gi|217036890|gb|ACJ75412.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosipho africanus TCF52B]
          Length = 642

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 20/57 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V T+ C  CK       CP   +        I P  C  CG C   CP  A +   E
Sbjct: 584 VNTDKCTGCKTCIVTFGCPAIFWDAENKKAKIDPTMCWGCGSCAQVCPFGAFELVKE 640


>gi|139437063|ref|ZP_01771223.1| Hypothetical protein COLAER_00198 [Collinsella aerofaciens ATCC
           25986]
 gi|133776710|gb|EBA40530.1| Hypothetical protein COLAER_00198 [Collinsella aerofaciens ATCC
           25986]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C+   C EVCPV+      + + +   ECI C +C   CP  AI PD
Sbjct: 50  ACHHCEGAPCAEVCPVNAIEHDGDRIHVKEQECIGCRLCAIACPFGAIHPD 100


>gi|117618565|ref|YP_857778.1| tetrathionate reductase, subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559972|gb|ABK36920.1| tetrathionate reductase, subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 262

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C++VCP    ++ ++  + ++ D C+ CG C   CP DA   + E
Sbjct: 109 CNHCAEPACLDVCPTGATFQRDDGIVVVNNDWCVGCGYCVQACPYDARFINHE 161


>gi|78224702|ref|YP_386449.1| twin-arginine translocation pathway signal [Geobacter
           metallireducens GS-15]
 gi|78195957|gb|ABB33724.1| Twin-arginine translocation pathway signal [Geobacter
           metallireducens GS-15]
          Length = 257

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V + C  C++  CV+VCPV   Y   + +  +    CI CG C   CP       
Sbjct: 123 AFFVPKLCNQCENPPCVQVCPVGATYATADGVVLVDRKWCIGCGYCIMGCPYGVRFFH 180


>gi|51894235|ref|YP_076926.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857924|dbj|BAD42082.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
          Length = 291

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    CV  CP D    G+  L  ++ D CI CG CE  CP D I  D
Sbjct: 91  SCMHCTDAGCVTACPTDALQYGDYGLVTLNQDACIGCGYCEAACPFDCIHVD 142


>gi|26246921|ref|NP_752961.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           CFT073]
 gi|110641095|ref|YP_668825.1| anaerobic dimethyl sulfoxide reductase, subunit B [Escherichia coli
           536]
 gi|191172116|ref|ZP_03033660.1| dimethylsulfoxide reductase, B subunit [Escherichia coli F11]
 gi|227884138|ref|ZP_04001943.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           83972]
 gi|300978541|ref|ZP_07174294.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 45-1]
 gi|300983194|ref|ZP_07176473.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 200-1]
 gi|301047846|ref|ZP_07194896.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 185-1]
 gi|26107321|gb|AAN79504.1|AE016758_108 Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           CFT073]
 gi|110342687|gb|ABG68924.1| anaerobic dimethyl sulfoxide reductase, subunit B [Escherichia coli
           536]
 gi|190907643|gb|EDV67238.1| dimethylsulfoxide reductase, B subunit [Escherichia coli F11]
 gi|227838890|gb|EEJ49356.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           83972]
 gi|300300274|gb|EFJ56659.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 185-1]
 gi|300306958|gb|EFJ61478.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 200-1]
 gi|300409620|gb|EFJ93158.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 45-1]
 gi|307552737|gb|ADN45512.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           ABU 83972]
 gi|315291254|gb|EFU50614.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 153-1]
 gi|324012985|gb|EGB82204.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 60-1]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|325525592|gb|EGD03378.1| putative dimethyl sulfoxide reductase subunit [Burkholderia sp.
           TJI49]
          Length = 247

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|301058314|ref|ZP_07199347.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300447550|gb|EFK11282.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 1130

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            V  E C  C    C+E+CP           G     +    C  CG C   CP +A   D
Sbjct: 1057 VDEERCRGC--GRCIEICPYRAVSFHPNGVGGWHAVVDEALCKGCGNCISVCPSNA--AD 1112

Query: 59   TEPGLELWLK 68
            +    + +L+
Sbjct: 1113 SPYRNQEYLE 1122



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY 27
           TYV TE C+LC    C  VCPV    
Sbjct: 104 TYVDTEQCVLC--GRCAAVCPVITPD 127


>gi|86139798|ref|ZP_01058364.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85823427|gb|EAQ43636.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 268

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+  
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEGVMK 146


>gi|307822558|ref|ZP_07652789.1| nitrate reductase, beta subunit [Methylobacter tundripaludum SV96]
 gi|307736162|gb|EFO07008.1| nitrate reductase, beta subunit [Methylobacter tundripaludum SV96]
          Length = 544

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 200 MMYL-PRLCEHCLNPTCVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYN 258

Query: 59  TE 60
            E
Sbjct: 259 WE 260


>gi|163752219|ref|ZP_02159421.1| hypothetical protein KT99_10608 [Shewanella benthica KT99]
 gi|161327900|gb|EDP99078.1| hypothetical protein KT99_10608 [Shewanella benthica KT99]
          Length = 697

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C    C++ CP   + +  E    +  P+ C  CG C   CP +A + D
Sbjct: 168 ISMACNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLD 223


>gi|194337328|ref|YP_002019122.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309805|gb|ACF44505.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 258

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C    CV  CP +  ++  + +       CI C  C   CP  A+  +     
Sbjct: 116 IPSLCNHCAEPPCVRSCPTEAVFKRNDGIVAFDYHRCIGCRSCMASCPYGAVSFNWREPR 175

Query: 64  ELWLKINSEYATQWPNITTK 83
                I+  Y T+   +  K
Sbjct: 176 PALKAISESYPTREMGVAEK 195


>gi|152969484|ref|YP_001334593.1| anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954333|gb|ABR76363.1| anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119


>gi|152970131|ref|YP_001335240.1| anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954980|gb|ABR77010.1| anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119


>gi|150015217|ref|YP_001307471.1| ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
 gi|149901682|gb|ABR32515.1| Ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
          Length = 496

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C   C        +    I PD+C +CG+C+  CP DA+  D  P
Sbjct: 104 FQVTDACRNCIAHKCQSACNFGAITYVDGRAYIDPDKCKECGMCKKACPYDAVAEDMRP 162



 Score = 41.5 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 19/104 (18%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
            Y+  + C  C                  C + CP         +    I   +C++CG 
Sbjct: 134 AYIDPDKCKECGMCKKACPYDAVAEDMRPCKKSCPTGALSYNAEDLSAEITESKCVNCGA 193

Query: 46  CEPECPVDAIKPDTEP---GLELWLKINSEYATQWPNITTKKES 86
           C   CP  AI+  +        L  K    YA   P IT +   
Sbjct: 194 CMSACPFGAIEDKSSLVKVINRLMDKEEKIYAVVAPAITGQFGP 237


>gi|300245949|gb|ADJ94032.1| putative benzoate-degrading protein BamI [Clostridia bacterium
           enrichment culture clone BF]
          Length = 365

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           M      +C  C    CVEVCPV+      +F  +    CI CGVC P+CP +A
Sbjct: 283 MRETDEGSCTGC--GACVEVCPVNALTMEGDFPVVDEGWCIGCGVCIPKCPTEA 334


>gi|257790423|ref|YP_003181029.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474320|gb|ACV54640.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 207

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++ ++ +C+ C+   C++VCP     +  + +  ++PD CI C  C   CP +
Sbjct: 84  SFFISTSCMHCEDPSCMKVCPAGAISKDAHGIVKVNPDVCIGCKYCFQACPYE 136


>gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 526

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y++ E CI C    C  +CPV     E  N   I  D+CI CG C   CP++AI
Sbjct: 471 SYLIGEKCIGC--GKCKMLCPVGAISGEKRNRHEIDHDKCIKCGQCMENCPIEAI 523


>gi|317060630|ref|ZP_07925115.1| hydrogenase [Fusobacterium sp. D12]
 gi|313686306|gb|EFS23141.1| hydrogenase [Fusobacterium sp. D12]
          Length = 599

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C          +    C  CG C   CPV AI    
Sbjct: 166 FKITEKCIGC--TACARVCPVKCIAGAPKKRHFLDTSRCTHCGQCVSACPVGAIFEGD 221



 Score = 37.3 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           ++ T  C  C    CV  CPV   +EG++ L
Sbjct: 196 FLDTSRCTHC--GQCVSACPVGAIFEGDHTL 224


>gi|294341084|emb|CAZ89481.1| Respiratory nitrate reductase 1 beta chain (Nitrate reductase A
           subunit beta) (Quinol-nitrate oxidoreductase subunit
           beta) [Thiomonas sp. 3As]
          Length = 507

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISACPYKKIYYN 234

Query: 59  TE 60
            E
Sbjct: 235 WE 236


>gi|226324119|ref|ZP_03799637.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758]
 gi|225207668|gb|EEG90022.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758]
          Length = 482

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y VTENC  C    C+  C       G     I   +C +CG C   CP +AI  
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEPGHYRSHIDASKCKECGQCAKACPYNAIAH 147



 Score = 41.1 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
           +++    C  C                  C   CPVD     E+ +  I  ++CI CG C
Sbjct: 123 SHIDASKCKECGQCAKACPYNAIAHLKRPCKFSCPVDAITYDEHGISIIDKNKCIRCGKC 182

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 183 IHSCPFGAI 191


>gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 526

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y++ E CI C    C  +CPV     E  N   I  D+CI CG C   CP++AI
Sbjct: 471 SYLIGEKCIGC--GKCKMLCPVGAISGEKRNRHEIDHDKCIKCGQCMENCPIEAI 523


>gi|206575826|ref|YP_002238703.1| anaerobic dimethyl sulfoxide reductase, B subunit [Klebsiella
           pneumoniae 342]
 gi|288935637|ref|YP_003439696.1| dimethylsulfoxide reductase, chain B [Klebsiella variicola At-22]
 gi|290509667|ref|ZP_06549038.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella sp.
           1_1_55]
 gi|206564884|gb|ACI06660.1| anaerobic dimethyl sulfoxide reductase, B subunit [Klebsiella
           pneumoniae 342]
 gi|288890346|gb|ADC58664.1| dimethylsulfoxide reductase, chain B [Klebsiella variicola At-22]
 gi|289779061|gb|EFD87058.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella sp.
           1_1_55]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ ++  + ++   CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKRDDGFVVVNEAVCIGCRYCHMACPYGAPQYNAD 119


>gi|323190717|gb|EFZ75986.1| dimethylsulfoxide reductase, chain B [Escherichia coli RN587/1]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQFNE 118


>gi|90411449|ref|ZP_01219460.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           profundum 3TCK]
 gi|90327662|gb|EAS44005.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           profundum 3TCK]
          Length = 204

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++  C  C    C +VCP    ++ E+   I   D CI C  CE  CP  A + + E
Sbjct: 59  SYYLSIACNHCDEPACTKVCPSGAMHKREDGFVIVDEDVCIGCKYCEMACPYGAPQYNEE 118


>gi|308069431|ref|YP_003871036.1| Iron-sulfur protein [Paenibacillus polymyxa E681]
 gi|305858710|gb|ADM70498.1| Iron-sulfur protein [Paenibacillus polymyxa E681]
          Length = 216

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C++  C   CPV    + +  + I  + CI C  C   CP  AI
Sbjct: 88  VPVQCRHCENAPCAHACPVQAIRQEDGVVMIDEERCIGCTSCVLACPFGAI 138


>gi|317131978|ref|YP_004091292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ethanoligenens harbinense YUAN-3]
 gi|315469957|gb|ADU26561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ethanoligenens harbinense YUAN-3]
          Length = 368

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V TE C+ C    C + C  D         +I  + C+ CG C   CP DA+     P
Sbjct: 190 PHVHTEKCVGC--GTCRKQCAHDAITLTGGKASIDHNRCVGCGRCIGACPTDAV---EAP 244

Query: 62  GLELWLKINSEYATQ-WPNITTK 83
             E    +N + A   W  +  +
Sbjct: 245 IDEANDILNCKMAEYTWAVLHGR 267


>gi|254459827|ref|ZP_05073243.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206676416|gb|EDZ40903.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 648

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           C++VCP          ++I P  C  CG C   CP  AI  D  P   ++ ++N+
Sbjct: 279 CLDVCPTGAITPAGEHVSIDPMICAGCGSCSAVCPSGAISSDAPPVDAIFSRLNT 333



 Score = 36.9 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP            L    D C+ CG+C   CP  AI
Sbjct: 495 VDTDACTLCL--SCVSLCPSGALGDNSDLPQLRFQEDACLQCGLCSNICPEKAI 546


>gi|56477160|ref|YP_158749.1| subunit B of a molybdenum enzyme, that of tetrathionate reductase
           (TTRB) [Aromatoleum aromaticum EbN1]
 gi|56313203|emb|CAI07848.1| subunit B of a molybdenum enzyme, similar to that of tetrathionate
           reductase (TTRB) [Aromatoleum aromaticum EbN1]
          Length = 246

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TY++   C  C    CV VCPV   ++ E+  + +  D C+ C  C   CP DA   + E
Sbjct: 93  TYMLPRLCNHCDAPPCVPVCPVGATFKREDGIVVVDGDRCVGCAYCVQACPYDARFINHE 152

Query: 61  PGLEL 65
                
Sbjct: 153 TNKAD 157


>gi|317490354|ref|ZP_07948838.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316910489|gb|EFV32114.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 193

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
          V   C+ C+   CV+ CP       ++ +  I  ++CI CG+C   CP  A
Sbjct: 31 VPNACVQCEKPACVDACPTGASVRRDDGITVIDYEKCIACGLCLAACPYGA 81


>gi|295106716|emb|CBL04259.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 185

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  C+ VCP    Y+ +   + I  ++CI C +C   CP +A   +    +  
Sbjct: 44  ACQHCENPACLRVCPTGATYKDDKGRVEIDYEKCIGCRMCMAACPYNARVFNWNEPVRD 102


>gi|296102541|ref|YP_003612687.1| anaerobic dimethyl sulfoxide reductase, B subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057000|gb|ADF61738.1| anaerobic dimethyl sulfoxide reductase, B subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ ++  + ++ D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKRDDGFVVVNEDVCIGCRYCHMACPYGAPQY 116


>gi|225386321|ref|ZP_03756085.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme
          DSM 15981]
 gi|225047600|gb|EEG57846.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme
          DSM 15981]
          Length = 56

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++C+ C    C   CPV    EG++   I  D CIDCG C   CP  AI
Sbjct: 1  MAYVINDSCVSC--GSCAAECPVGAISEGDSQYVIDADTCIDCGTCAGTCPTGAI 53


>gi|197284081|ref|YP_002149953.1| anaerobic dimethyl sulfoxide reductase subunit B [Proteus mirabilis
           HI4320]
 gi|227358047|ref|ZP_03842389.1| tetrathionate reductase B subunit [Proteus mirabilis ATCC 29906]
 gi|194681568|emb|CAR40516.1| anaerobic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Proteus mirabilis HI4320]
 gi|227161782|gb|EEI46814.1| tetrathionate reductase B subunit [Proteus mirabilis ATCC 29906]
          Length = 183

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            +T +C  C    C++VCP D + +  + + I   D+CI C +C   CP +A   D
Sbjct: 53  FITMSCNHCDDPQCLKVCPADTYTKRADGIVIQDHDKCIGCQMCIMACPYNAPVYD 108


>gi|197123586|ref|YP_002135537.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196173435|gb|ACG74408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 273

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ V + C  C+ T C++VCPV   Y   + +  +  + CI C  C   CP  +     E
Sbjct: 139 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGVVLVDGERCIGCAYCVQACPFGSRFLSPE 198

Query: 61  PGLEL 65
                
Sbjct: 199 THTAE 203


>gi|124485934|ref|YP_001030550.1| hypothetical protein Mlab_1114 [Methanocorpusculum labreanum Z]
 gi|124363475|gb|ABN07283.1| protein of unknown function DUF362 [Methanocorpusculum labreanum Z]
          Length = 384

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V  E C+ C    CV +CPV          +    +CI C  C   C   AI+ 
Sbjct: 317 PVVKKEICVGC--GQCVRICPVGAAAMKGQKASFDHRKCIRCYCCHEMCQYHAIEM 370


>gi|83952617|ref|ZP_00961347.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83835752|gb|EAP75051.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 264

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRTEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGVMK 146


>gi|317490085|ref|ZP_07948574.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833846|ref|ZP_08166196.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
 gi|316910790|gb|EFV32410.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485204|gb|EGC87676.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
          Length = 219

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++ ++ +C+ C+   C+ VCP     +  + +  ++PD CI C  C   CP +
Sbjct: 96  SFFISTSCMHCEEPSCMRVCPAGAISKDAHGIVKVNPDVCIGCKYCFQACPYE 148


>gi|187776781|ref|ZP_02993254.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC
           15579]
 gi|187775440|gb|EDU39242.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC
           15579]
          Length = 497

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI
Sbjct: 104 FTVTEACRGCIQHKCMEVCSAKALARINGKSYIDQNKCRECGLCKKVCPYNAI 156



 Score = 41.5 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYE--GENFLAIHPDECIDCGV 45
           +Y+    C  C                  C  VCP         +    I  + CI+CG 
Sbjct: 134 SYIDQNKCRECGLCKKVCPYNAIVEVMRPCKRVCPTGALEINPDDKRAMIEKENCINCGA 193

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE--YATQWPNITTKKES 86
           C   CP  AI   +       L    +  YA   P IT +   
Sbjct: 194 CMGACPFGAISDKSYIVNITRLLKEKKKVYAIIAPAITGQFGP 236


>gi|86159508|ref|YP_466293.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776019|gb|ABC82856.1| tetrathionate reductase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 274

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ V + C  C+ T C++VCPV   Y   + +  +  + CI C  C   CP  +     E
Sbjct: 140 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGVVLVDGERCIGCAYCVQACPFGSRFLSPE 199

Query: 61  PGLEL 65
                
Sbjct: 200 THTAE 204


>gi|219667563|ref|YP_002457998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537823|gb|ACL19562.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 182

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    C +VCP    Y+ E+ +  I   +CI C  C   CP +A   +     E 
Sbjct: 58  CQHCDDAPCQKVCPTGATYKREDGIVLIDAQKCIGCKYCMVACPYNARVINEHGVPEK 115


>gi|297516480|ref|ZP_06934866.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
          OP50]
          Length = 161

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 16 AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 74


>gi|227113131|ref|ZP_03826787.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 626

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P     + 
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTSPVDNSTIA 115

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 116 HKCDLCADRP 125



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDC------GVCEPECPVDAIK 56
           V E CI CK   CV  CP        + +  +    +C  C        C   CP  A++
Sbjct: 83  VQEKCIGCK--SCVLACPFGAMSMVTSPVDNSTIAHKCDLCADRPEGQACVEACPTQALQ 140

Query: 57  PDTE 60
             +E
Sbjct: 141 LVSE 144


>gi|294788766|ref|ZP_06754007.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483248|gb|EFG30934.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 287

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+    CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I  D  
Sbjct: 82  AYIDESVCIGC--TACIRACPVDAIMGASKFMHTVLTDECTGCGLCVAPCPVDCI--DLI 137

Query: 61  PGLELWLKINSEYA 74
              + +L  N   A
Sbjct: 138 DVKDEFLPRNHYLA 151



 Score = 33.8 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF 32
           M  V+T+ C  C    CV  CPVDC    +  
Sbjct: 111 MHTVLTDECTGC--GLCVAPCPVDCIDLIDVK 140


>gi|238894601|ref|YP_002919335.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546917|dbj|BAH63268.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119


>gi|238893956|ref|YP_002918690.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546272|dbj|BAH62623.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119


>gi|159043786|ref|YP_001532580.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911546|gb|ABV92979.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dinoroseobacter shibae DFL 12]
          Length = 248

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGAREMD 133


>gi|239908169|ref|YP_002954910.1| iron-sulphur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798035|dbj|BAH77024.1| iron-sulphur binding protein [Desulfovibrio magneticus RS-1]
          Length = 210

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C    C E CP            I+   C+ CG C   CP  AI
Sbjct: 88  VDPEACHGC--GACAEACPDAAIQITAGKAVINQGTCLGCGACARVCPSRAI 137


>gi|153868840|ref|ZP_01998577.1| truncated electron transport protein DsrO [Beggiatoa sp. PS]
 gi|152074583|gb|EDN71423.1| truncated electron transport protein DsrO [Beggiatoa sp. PS]
          Length = 153

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C+H  CV+VCP    ++  + +  +    CI C  C   CP  A     E
Sbjct: 16 CQHCEHPPCVDVCPTGASFKRVDGIVLVDKHICIGCRYCMMACPYKARSFIHE 68


>gi|74318493|ref|YP_316233.1| iron-sulfur cluster protein [Thiobacillus denitrificans ATCC 25259]
 gi|74057988|gb|AAZ98428.1| iron-sulfur cluster protein [Thiobacillus denitrificans ATCC 25259]
          Length = 259

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    CV+VCP    ++  + +  ++   CI C  C   CP  A     EP  +
Sbjct: 120 CQHCAEPPCVDVCPTGASFKRADGIVLVNRHTCIGCRYCMMACPYKARSLVHEPLND 176


>gi|331083627|ref|ZP_08332738.1| hypothetical protein HMPREF0992_01662 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403838|gb|EGG83390.1| hypothetical protein HMPREF0992_01662 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 860

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E C  CK     + CP++     +  + I  + C  CG C  +CP +A +  T
Sbjct: 712 VDMEKCRGCKICRVEKNCPINVAKVVDGKIVIDENSCNHCGRCIGKCPFNAFEDYT 767


>gi|260913421|ref|ZP_05919900.1| anaerobic dimethyl sulfoxide reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632495|gb|EEX50667.1| anaerobic dimethyl sulfoxide reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 205

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           +Y ++ +C  C +  CV VCP    ++  +   I + D CI C  C   CP DA + D
Sbjct: 60  SYYMSISCNHCDNPACVTVCPTGAMHKNADGFVIVNEDICIGCRYCHMACPYDAPQYD 117


>gi|238919824|ref|YP_002933339.1| glutamate synthase family, small subunit, [Edwardsiella ictaluri
           93-146]
 gi|238869393|gb|ACR69104.1| glutamate synthase family, small subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 678

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP     +  + + +  ++CI C  C   CP  AI
Sbjct: 56  CRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAI 102


>gi|260587325|ref|ZP_05853238.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Blautia hansenii DSM 20583]
 gi|260542192|gb|EEX22761.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Blautia hansenii DSM 20583]
          Length = 879

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E C  CK     + CP++     +  + I  + C  CG C  +CP +A +  T
Sbjct: 731 VDMEKCRGCKICRVEKNCPINVAKVVDGKIVIDENSCNHCGRCIGKCPFNAFEDYT 786


>gi|226329951|ref|ZP_03805469.1| hypothetical protein PROPEN_03864 [Proteus penneri ATCC 35198]
 gi|225200746|gb|EEG83100.1| hypothetical protein PROPEN_03864 [Proteus penneri ATCC 35198]
          Length = 154

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y +T +C  C+   CV+ CP    +  EG+  + +   +C+ CG C   CP  A + + 
Sbjct: 71  AYTLTISCNHCESPVCVKNCPTTAMHKREGDGIVRVDTSKCVGCGYCAWSCPYGAPQMNE 130

Query: 60  EPGLE 64
           E G  
Sbjct: 131 ETGQM 135


>gi|193084277|gb|ACF09936.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote KM3-130-D10]
          Length = 483

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C+ + C  +CP    +  E+ +     + CI C  C   CP DA+  D
Sbjct: 70  RCNHCEDSPCTTICPTTALFTREDGIVDFDDERCIGCKSCMQACPYDALYID 121



 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 9/65 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIKPDT 59
           E CI CK   C++ CP D  Y   N             +       C   CP +AI    
Sbjct: 101 ERCIGCK--SCMQACPYDALYIDPNKGTAAKCNYCAHRIEHSYEPSCVIVCPTEAIISGD 158

Query: 60  EPGLE 64
                
Sbjct: 159 LDDHN 163


>gi|160940737|ref|ZP_02088079.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436257|gb|EDP14024.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC
           BAA-613]
          Length = 505

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y+VT+NC  C    C   C       G     I P +C +CG C   CP +AI     P
Sbjct: 115 SYIVTDNCRKCMGKACQNSCNFGAISMGRERAYIEPGKCKECGKCSQACPYNAIAHLERP 174



 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+    C  C                  C ++CPVD     E  +  I   +CI CG C
Sbjct: 146 AYIEPGKCKECGKCSQACPYNAIAHLERPCKKICPVDAITYDEYGICVIDEKKCIQCGAC 205

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 206 IHSCPFGAI 214


>gi|330508939|ref|YP_004385367.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii
           GP-6]
 gi|328929747|gb|AEB69549.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii
           GP-6]
          Length = 811

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV  + CI CK   CV+VCP            +    C  CG C   CPVDAIK     
Sbjct: 572 AYVDPDLCIKCKL--CVDVCPQKAISVKSP-AYVDEAACKGCGSCAAACPVDAIKMRLFS 628

Query: 62  GLELWLKINS 71
             ++  +I +
Sbjct: 629 DEQILAQIRA 638



 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 19/74 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           YV    C  C + +C +VCPV+   E +  +                   + P  CI CG
Sbjct: 237 YVDPVLCKGCIN-ECADVCPVEVPNEYDFGIGKRKAIYVPYPQAVPLSACVDPKACIGCG 295

Query: 45  VCEPECPVDAIKPD 58
            C   CP  A+K D
Sbjct: 296 RCVESCPTQAVKLD 309


>gi|260428995|ref|ZP_05782972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Citreicella
           sp. SE45]
 gi|260419618|gb|EEX12871.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Citreicella
           sp. SE45]
          Length = 249

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D
Sbjct: 81  SCLHCEDAPCVPVCPTGASYKRVEDGIVLVNEDACIGCGLCAWACPYGAREMD 133


>gi|288930542|ref|YP_003434602.1| methyl-viologen-reducing hydrogenase subunit delta [Ferroglobus
           placidus DSM 10642]
 gi|288892790|gb|ADC64327.1| methyl-viologen-reducing hydrogenase delta subunit [Ferroglobus
           placidus DSM 10642]
          Length = 777

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV  E CI C+   C EVC  +          I P+ C+ CGVC   CP DAI
Sbjct: 569 AYVNEEKCIGCR--ICEEVCNFNAVTFENKKAKIDPNACVMCGVCAASCPADAI 620



 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 19/79 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           YV    C  C   DC  VCPV+   E +  +                  AI  + CI C 
Sbjct: 237 YVDENKCKGCID-DCSSVCPVEVPNEFDYTIGVRKAIYLPIPQSTPLYAAIDWEHCIGCR 295

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +CE  C   A+  + +P  
Sbjct: 296 LCEKACEPKAVDFNQKPED 314


>gi|302875371|ref|YP_003844004.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
 gi|307688950|ref|ZP_07631396.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
 gi|302578228|gb|ADL52240.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
          Length = 417

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + C+ C    C + CP+      +   A+  + C+ CGVC   CP  +I
Sbjct: 287 VIKDGCVGC--GKCAKACPIGAITMKDKKAAVDEEICLGCGVCVRNCPKKSI 336


>gi|206896460|ref|YP_002247481.1| indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate
           ferredoxin oxidoreductase subunit alpha)
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206739077|gb|ACI18155.1| indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate
           ferredoxin oxidoreductase subunit alpha)
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 638

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C  C+   CV +  CP   F   +  ++I  D C  C  C   CP +AI   +  
Sbjct: 557 VEEEKCTGCR--VCVNLLGCPALVFDRDKKKVSIDEDLCAGCSACAQVCPYNAIYEKSIE 614

Query: 62  GLELWLKINSEYATQWPNIT 81
           G + +  ++ E   +W    
Sbjct: 615 GEKNFDVVSDESRARWQQWY 634


>gi|121610913|ref|YP_998720.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121555553|gb|ABM59702.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 267

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C    CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 107 SCLHCADPPCVPVCPTGASYKRQQDGIVLVDYDKCIGCKYCAWACPYGAREFDE 160


>gi|293391269|ref|ZP_06635603.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951803|gb|EFE01922.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 205

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP     +  +   I + + CI C  C   CP DA + D E
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMQKNADGFVIVNEEICIGCRYCHMACPYDAPQFDAE 119


>gi|253690638|ref|YP_003019828.1| glutamate synthase, small subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757216|gb|ACT15292.1| glutamate synthase, small subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 674

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P     + 
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNPVDNSTVA 115

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 116 HKCDLCADRP 125



 Score = 35.3 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V E CI CK   CV  CP        N +  +      C +C       A 
Sbjct: 83  VQEKCIGCK--SCVLACPFGAMSMVTNPVD-NSTVAHKCDLCADRPEGQAC 130


>gi|229488683|ref|ZP_04382549.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121]
 gi|229324187|gb|EEN89942.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121]
          Length = 543

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 21 CPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKIN 70
          CPV+C +   +         L I PD CIDCG C  ECPV+AI PD E       +L++N
Sbjct: 2  CPVNCIHPTPDEAPFATTEMLYIDPDTCIDCGACVDECPVEAIFPDNELDEDDAPYLQMN 61

Query: 71 SEYATQWPN 79
          + Y  + P 
Sbjct: 62 ASYFEKHPM 70


>gi|89896641|ref|YP_520128.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336089|dbj|BAE85684.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 183

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    C +VCP    Y+ E+ +  I   +CI C  C   CP +A   +     E 
Sbjct: 59  CQHCDDAPCQKVCPTGATYKREDGIVLIDAQKCIGCKYCMVACPYNARVINEHGVPEK 116


>gi|190574690|ref|YP_001972535.1| putative respiratory nitrate reductase subunit [Stenotrophomonas
           maltophilia K279a]
 gi|190012612|emb|CAQ46240.1| putative respiratory nitrate reductase subunit [Stenotrophomonas
           maltophilia K279a]
          Length = 514

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVSACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|322685522|gb|EFY81518.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
          Length = 176

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 31 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 87


>gi|164686811|ref|ZP_02210839.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
 gi|164604201|gb|EDQ97666.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
          Length = 646

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +TE CI C    C  VCPVDC   E +    I  + C  CG C   CPVDAI        
Sbjct: 221 ITEKCIGC--GICQRVCPVDCIAGEKKEQRRIDYNRCTHCGRCLSACPVDAIT--AGDNT 276

Query: 64  ELWLKINSEYATQWPNITTKKES 86
             ++    + +T    + T+   
Sbjct: 277 LKFI---RDLSTPNKLVITQMAP 296


>gi|147678456|ref|YP_001212671.1| hypothetical protein PTH_2121 [Pelotomaculum thermopropionicum SI]
 gi|146274553|dbj|BAF60302.1| Uncharacterized Fe-S center protein [Pelotomaculum
           thermopropionicum SI]
          Length = 367

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C+   C + CP            +  ++CI CG C   CPV AI  + +
Sbjct: 190 VNPEKCTGCE--RCSQWCPAQAIGVRGRVSVVDENKCIGCGECTVTCPVHAISVNWK 244


>gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Aeropyrum pernix K1]
 gi|116063262|dbj|BAA81623.2| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Aeropyrum pernix K1]
          Length = 233

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
              V + C  C +  CV+VCPV   Y  E+ +  +  D CI CG C   CP  A   
Sbjct: 98  PVYVPKQCNHCDNPSCVDVCPVKATYVNEDGIVLVDDDLCIGCGACIQNCPYGARFY 154


>gi|119719904|ref|YP_920399.1| cobyrinic acid a,c-diamide synthase [Thermofilum pendens Hrk 5]
 gi|119525024|gb|ABL78396.1| Cobyrinic acid a,c-diamide synthase [Thermofilum pendens Hrk 5]
          Length = 288

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V    C+ C    CV+ C  +    G     +  D C   G C   CP  AI    E 
Sbjct: 65  PVVDYSACVKCW--ACVDACQFNAIRRGPEGPVVDYDRCEGLGTCAFVCPAGAIGFAEER 122

Query: 62  GLELWLK 68
             E++  
Sbjct: 123 AGEIYAA 129


>gi|83590741|ref|YP_430750.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573655|gb|ABC20207.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 228

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  +C +C++  C +VCPV   Y  +     +  + CI C  C   CP    + + E 
Sbjct: 58  YFLPVSCQMCENAPCEKVCPVGATYTDDRGRVLVDYERCIGCRYCMAACPYGVRQFNWED 117

Query: 62  GLEL 65
             + 
Sbjct: 118 QQKA 121


>gi|268324769|emb|CBH38357.1| conserved hypothetical protein, 4Fe-4S binding domain family
           [uncultured archaeon]
          Length = 133

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C +VCP D     +    I + D+CI CG C   C + AI  D E
Sbjct: 54  CRACEYPPCAKVCPTDALRLRKGGGVILNKDKCIGCGFCAQACIMGAIFWDDE 106


>gi|269139126|ref|YP_003295827.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda
           EIB202]
 gi|267984787|gb|ACY84616.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda
           EIB202]
          Length = 678

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP     +  + + +  ++CI C  C   CP  AI
Sbjct: 56  CRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAI 102


>gi|257790280|ref|YP_003180886.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830177|ref|ZP_08163634.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257474177|gb|ACV54497.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487644|gb|EGC90082.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 206

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C++ +CV+VCP    ++ E+    I   +CI C  C   CP      + E 
Sbjct: 59  YFLNVQCQHCENPECVKVCPTGASHKTEDGTVQIDKSKCIGCQFCAMSCPYGVRYLNEEE 118

Query: 62  G 62
            
Sbjct: 119 R 119


>gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
 gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
          Length = 596

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           Y +++ C  C    C   CPV            I  ++CI CG C   CP  AI
Sbjct: 542 YEISDVCRGC--GLCARQCPVQAISGSPKTKHVIDQNKCIKCGACMTACPFKAI 593


>gi|220918377|ref|YP_002493681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956231|gb|ACL66615.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 273

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ V + C  C+ T C++VCPV   Y   +    +  + CI C  C   CP  +     E
Sbjct: 139 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGAVLVDGERCIGCAYCVQACPFGSRFLSPE 198

Query: 61  PGLEL 65
                
Sbjct: 199 THTAE 203


>gi|296272511|ref|YP_003655142.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096685|gb|ADG92635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 199

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCPVDCFY  E+ +      +CI CG C   CP  A
Sbjct: 58  ACMHCTDAPCEKVCPVDCFYIREDGIVLHDKHKCIGCGYCLYACPFGA 105


>gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
 gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
          Length = 610

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCPV C   +      I   EC+ CG C   C   AI   T
Sbjct: 543 SYVIDPEKCVGC--TACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVT 600

Query: 60  E 60
            
Sbjct: 601 P 601


>gi|206578545|ref|YP_002239452.1| anaerobic dimethyl sulfoxide reductase, B subunit [Klebsiella
           pneumoniae 342]
 gi|288936302|ref|YP_003440361.1| dimethylsulfoxide reductase, chain B [Klebsiella variicola At-22]
 gi|290510643|ref|ZP_06550013.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella sp.
           1_1_55]
 gi|206567603|gb|ACI09379.1| anaerobic dimethyl sulfoxide reductase, B subunit [Klebsiella
           pneumoniae 342]
 gi|288891011|gb|ADC59329.1| dimethylsulfoxide reductase, chain B [Klebsiella variicola At-22]
 gi|289777359|gb|EFD85357.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella sp.
           1_1_55]
          Length = 205

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119


>gi|167647826|ref|YP_001685489.1| nitrate reductase subunit beta [Caulobacter sp. K31]
 gi|167350256|gb|ABZ72991.1| nitrate reductase, beta subunit [Caulobacter sp. K31]
          Length = 507

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYN 234

Query: 59  TE 60
            E
Sbjct: 235 WE 236


>gi|147921465|ref|YP_684720.1| putative heterodisulfide reductase, subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620116|emb|CAJ35394.1| putative heterodisulfide reductase, subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 786

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  E C  C    C+++CP    Y     +AI P  CI  G C   CP  AI   +  
Sbjct: 578 AVVDPERCTRC--GICLKLCPYGAPYL-NGKVAIDPLSCIGLGGCISRCPEHAITMPSCS 634

Query: 62  GLELWLKI 69
             EL+ +I
Sbjct: 635 DEELFARI 642



 Score = 36.9 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 20/72 (27%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           ++  + C+ C    C   C V    E                       +I PD C  CG
Sbjct: 240 FIDPDKCVSC--GKCSAACSVRVPDEWNAGLSSRKAVYKPFAQAVPGTYSIDPDACKRCG 297

Query: 45  VCEPECPVDAIK 56
            C  EC   AI 
Sbjct: 298 KCARECDARAIN 309


>gi|15896602|ref|NP_349951.1| nitroreductase family protein [Clostridium acetobutylicum ATCC
          824]
 gi|15026443|gb|AAK81291.1|AE007833_4 Nitroreductase family protein fused to ferredoxin domain
          [Clostridium acetobutylicum ATCC 824]
 gi|325510763|gb|ADZ22399.1| Nitroreductase family protein fused to ferredoxin domain
          [Clostridium acetobutylicum EA 2018]
          Length = 273

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V  E CI C    CV+ C        +    I+ + CI CG C   CP++A+  D  
Sbjct: 1  MMTVDIEKCIGC--GKCVKDCFPKDIEIVDGKAKINNETCIKCGHCIAVCPMNAVSTDDY 58

Query: 61 PGLELWLKINSEYA 74
             E+      E++
Sbjct: 59 DMSEVKEYNKEEFS 72


>gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 613

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++C  C  T CV+ CP D    E +    I  D+CI CG C   CP DAI
Sbjct: 559 YQITDDCQGC--TKCVDECPGDAISGEAKEQHTIDEDDCIKCGSCINVCPFDAI 610


>gi|213163783|ref|ZP_03349493.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 171

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 26 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 82


>gi|169830611|ref|YP_001716593.1| hydrogenase large subunit [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637455|gb|ACA58961.1| hydrogenase large subunit domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 485

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C   CP       +N   I  D C++CG+C   CP  AI   + P
Sbjct: 94  YFVTDACQNCVAHSCRNSCPKKAISVLQNRAYIDNDSCVECGICAKNCPYYAIVEISRP 152



 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
            Y+  ++C+ C    C + CP     E                       I  D+C+ CG
Sbjct: 124 AYIDNDSCVEC--GICAKNCPYYAIVEISRPCERSCDMGAIKVDECRRAVIDLDKCVSCG 181

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 182 MCVAVCPFGAI 192


>gi|157363272|ref|YP_001470039.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga lettingae TMO]
 gi|157313876|gb|ABV32975.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           lettingae TMO]
          Length = 356

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V +E C+ C+   C   CPV+     + F AI+ D CI CG C   C   A+ P  + 
Sbjct: 187 PVVASEKCVACRM--CERNCPVNAITVSK-FAAINYDVCIGCGQCIAMCNYGAMVPKWDS 243

Query: 62  GLELWLKINSEY 73
             E+  K  +EY
Sbjct: 244 SSEILSKKMAEY 255


>gi|116623401|ref|YP_825557.1| cyclic nucleotide-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226563|gb|ABJ85272.1| cyclic nucleotide-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 755

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++V  +C  C    C+  CPV      ++   +  D CI CG C  +CP   I 
Sbjct: 509 FLVATSCRACMDPLCMTRCPVGSIRRKDSLDIVIEDWCIGCGNCAIDCPYGNIN 562


>gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
 gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
          Length = 298

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C    CV VCP        N + +   +C+ C  C   CP DA+  + E      
Sbjct: 53  DKCIHC--QQCVHVCPHGALTHQNNRILVDAKKCVGCLTCVHACPQDALTHEGEYKEIDE 110

Query: 67  L 67
           +
Sbjct: 111 I 111


>gi|262045103|ref|ZP_06018139.1| anaerobic dimethyl sulfoxide reductase [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|259037550|gb|EEW38785.1| anaerobic dimethyl sulfoxide reductase [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
          Length = 164

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + + +
Sbjct: 19 AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 78


>gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
 gi|118133456|gb|ABK60500.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
          Length = 443

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + +TE C+ C  T C  VCPV C   + +    I   +C+ CG C   CP+ A+ 
Sbjct: 27 FQITEKCVGC--TKCARVCPVSCISGKVKERHVIDTTKCVKCGQCISACPMGALP 79


>gi|320180612|gb|EFW55541.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella boydii
           ATCC 9905]
          Length = 205

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPVCTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 118


>gi|297627205|ref|YP_003688968.1| Anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922970|emb|CBL57552.1| Anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 214

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           TY  + +C  C+   CV+VCP     + ++    +   +C+ C  CE  C   A + + E
Sbjct: 69  TYYTSISCNHCEDPLCVQVCPTTAMTQRDDGTVFVDQSKCVGCRYCEWACAYGAPQFNAE 128

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
            G      +  +Y     +          A +   +
Sbjct: 129 AGHMTKCDLCYDYRQSGQDPACVAACPSRALEWGPI 164


>gi|255283527|ref|ZP_05348082.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255265984|gb|EET59189.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 372

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T+ CI C    C  +C        +   +I  ++C+ CG C   CP DA++  ++   
Sbjct: 192 VNTDACIGC--GACSRICAHGAAVVTDKKASIDHNKCVGCGRCIGVCPKDAVEAASDEAN 249

Query: 64  ELWLKINSEYATQ 76
           ++   +N + A  
Sbjct: 250 DI---LNCKIAEY 259


>gi|254524628|ref|ZP_05136683.1| nitrate reductase, beta subunit [Stenotrophomonas sp. SKA14]
 gi|219722219|gb|EED40744.1| nitrate reductase, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 514

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVSACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|193084380|gb|ACF10036.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote AD1000-18-D2]
          Length = 483

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C+ + C  +CP    +  E+ +     + CI C  C   CP DA+  D
Sbjct: 70  RCNHCEDSPCTTICPTTALFTREDGIVDFDDERCIGCKSCMQACPYDALYID 121



 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 9/56 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAI 55
           E CI CK   C++ CP D  Y   N             +       C   CP +AI
Sbjct: 101 ERCIGCK--SCMQACPYDALYIDPNKGTAAKCNYCAHRIEHSYEPSCVIVCPTEAI 154


>gi|148262605|ref|YP_001229311.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396105|gb|ABQ24738.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 368

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V E  C  C    C++ C  D     E    I P++C  CG C   C   AI        
Sbjct: 190 VAEKYCTAC--GICLKSCAHDAIAIIEGKAVIDPEKCTGCGRCITACLQKAINVQWNEAS 247

Query: 64  ELWLKINSEYAT 75
           EL +K   E+A 
Sbjct: 248 ELVMKKMCEFAK 259


>gi|330999801|ref|ZP_08323506.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329573804|gb|EGG55393.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 231

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  CV+ CPV   Y+   +  + I  D+CI C  C   C   A KPD
Sbjct: 88  CNHCENPTCVKACPVKATYKRPEDGIVVIDYDKCIHCMNCTKACAYGARKPD 139


>gi|323485418|ref|ZP_08090766.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum
          WAL-14163]
 gi|323694183|ref|ZP_08108360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium symbiosum WAL-14673]
 gi|323401281|gb|EGA93631.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum
          WAL-14163]
 gi|323501760|gb|EGB17645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium symbiosum WAL-14673]
          Length = 56

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+T++C+ C    C   CPV    +G+    I  + CIDCG C   CP  AI+ +
Sbjct: 1  MAYVITDSCVSC--GACAGDCPVGAISQGDGKYEIDANTCIDCGSCAGSCPTGAIEQE 56


>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
 gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
          Length = 595

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  E C  C  T C   CPV+      +N   I P++CI CGVC  +C  DA+ 
Sbjct: 541 YIDAEKCKGC--TLCARNCPVNAISGSVKNPHVIDPEKCIKCGVCMEKCKFDAVY 593


>gi|212690609|ref|ZP_03298737.1| hypothetical protein BACDOR_00095 [Bacteroides dorei DSM 17855]
 gi|212666855|gb|EEB27427.1| hypothetical protein BACDOR_00095 [Bacteroides dorei DSM 17855]
          Length = 582

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI     
Sbjct: 212 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVYIPV 271

Query: 61  PGLE 64
           P  E
Sbjct: 272 PCEE 275



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E+ +  I  ++CI CG C
Sbjct: 244 AWIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKC 303

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 304 MNACPFGAIF 313


>gi|78189898|ref|YP_380236.1| polysulfide reductase, subunit B, putative [Chlorobium
           chlorochromatii CaD3]
 gi|78172097|gb|ABB29193.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Chlorobium chlorochromatii CaD3]
          Length = 253

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CP    +   + +  +    CI C  C   CP  AI  + +  
Sbjct: 115 CNHCAKAPCVTACPTSAIFRRYDGIVGLDFHRCIGCRACMTACPYSAISFNWKAP 169


>gi|51893193|ref|YP_075884.1| oxidoreductase anaerobic dimethyl sulfoxide reductase subunit B
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856882|dbj|BAD41040.1| oxidoreductase similar to anaerobic dimethyl sulfoxide reductase
           subunit B [Symbiobacterium thermophilum IAM 14863]
          Length = 216

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   C++ CPV+ + +  + L I  P  CI C  C   CP    + D E
Sbjct: 58  ACNHCEDPACMKGCPVEAYTKRADGLVIHDPTACIGCQYCTWTCPYSVPQFDPE 111


>gi|301059609|ref|ZP_07200518.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 [delta
           proteobacterium NaphS2]
 gi|300446255|gb|EFK10111.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 [delta
           proteobacterium NaphS2]
          Length = 259

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    CV  CP    ++ E    + +    CI C  C   CP  +   +        
Sbjct: 120 CNHCDDPPCVRACPTQATFKREKDGIVMMDYHRCIGCRFCMAACPYGSRSFNFRDPRPYV 179

Query: 67  LKINSEYATQWPNITTK 83
            KIN  + T+   +  K
Sbjct: 180 RKINPAFPTRRRGVVEK 196


>gi|254419172|ref|ZP_05032896.1| nitrate reductase, beta subunit [Brevundimonas sp. BAL3]
 gi|196185349|gb|EDX80325.1| nitrate reductase, beta subunit [Brevundimonas sp. BAL3]
          Length = 508

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WD 236


>gi|194366012|ref|YP_002028622.1| nitrate reductase subunit beta [Stenotrophomonas maltophilia
           R551-3]
 gi|194348816|gb|ACF51939.1| nitrate reductase, beta subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 514

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVSACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
 gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
          Length = 598

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y +T++C  C  T CV+ CP D    E +    I  DECI CG C   CP DAI  +
Sbjct: 544 YKITDDCEGC--TKCVDECPADAISGEAKEQHTIDVDECIKCGACVDVCPFDAIVKE 598


>gi|227496950|ref|ZP_03927202.1| anaerobic dimethyl sulfoxide reductase, subunit B [Actinomyces
           urogenitalis DSM 15434]
 gi|226833558|gb|EEH65941.1| anaerobic dimethyl sulfoxide reductase, subunit B [Actinomyces
           urogenitalis DSM 15434]
          Length = 212

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           TY  + +C  C++  C+EVCP     + E+  + +   +C+ C  C+  CP  A + D
Sbjct: 67  TYYTSVSCNHCENPVCMEVCPTTAMSKREDGTVYVDQSKCVGCRYCQWACPYGAPQLD 124


>gi|187250889|ref|YP_001875371.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum
           Pei191]
 gi|186971049|gb|ACC98034.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum
           Pei191]
          Length = 478

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y+VTE C  C    C+  CP +          I P +C +CG C+  CP  AI       
Sbjct: 113 YMVTEVCQGCVARQCIYDCPFNAISMQNGRAYIEPAKCKNCGKCKSACPYGAI------- 165

Query: 63  LELWLKINSEYATQWPNITTKKE 85
               LK+N       P    KK+
Sbjct: 166 ----LKLNVPCEEACPVNAIKKD 184



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            Y+    C  C                  C E CPV+   + +     I    CI CG C
Sbjct: 143 AYIEPAKCKNCGKCKSACPYGAILKLNVPCEEACPVNAIKKDQKGRAIIDHSMCISCGRC 202

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 203 MKVCPFGAIM 212


>gi|113968979|ref|YP_732772.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113883663|gb|ABI37715.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 251

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C+ +CP    ++  +  + ++ + C+ CG C   CP DA   + E
Sbjct: 98  CNHCENPPCIPICPTGATFQRPDGIVVVNNEWCVGCGYCVQACPYDARFINHE 150


>gi|322694431|gb|EFY86261.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Metarhizium acridum
           CQMa 102]
          Length = 320

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 218 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 275

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 276 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 308


>gi|260598003|ref|YP_003210574.1| anaerobic dimethyl sulfoxide reductase subunit B [Cronobacter
           turicensis z3032]
 gi|260217180|emb|CBA31029.1| Anaerobic dimethyl sulfoxide reductase chain B [Cronobacter
           turicensis z3032]
          Length = 205

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+  + ++ D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEDVCIGCRYCHMACPYGAPQY 116


>gi|117919087|ref|YP_868279.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117611419|gb|ABK46873.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 251

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C+ +CP    ++  +  + ++ + C+ CG C   CP DA   + E
Sbjct: 98  CNHCENPPCIPICPTGATFQRPDGIVVVNNEWCVGCGYCVQACPYDARFINHE 150


>gi|124382860|ref|YP_001025159.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10229]
 gi|126446057|ref|YP_001079510.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10247]
 gi|126238911|gb|ABO02023.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10247]
 gi|261827011|gb|ABM99646.2| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10229]
          Length = 265

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREENGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|1353257|gb|AAB06234.1| dimethyl sulphoxide reductase subunit B [Haemophilus influenzae]
          Length = 205

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D
Sbjct: 61  YYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYD 117


>gi|242241404|ref|YP_002989585.1| oxidoreductase Fe-S binding subunit [Dickeya dadantii Ech703]
 gi|242133461|gb|ACS87763.1| glutamate synthase, small subunit [Dickeya dadantii Ech703]
          Length = 671

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   C  VCP          + +  ++CI C  C   CP  AI  +T
Sbjct: 56  CRHCEDAPCASVCPTQALVRKNESIQLIQEKCIGCKTCVLACPFGAISVET 106



 Score = 38.4 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIKPD 58
           + E CI CK   CV  CP                +C  C        C   CP  A++  
Sbjct: 83  IQEKCIGCK--TCVLACPFGAISVETQQGTATAHKCDLCADRAEGQACVAACPTQALQLV 140

Query: 59  TEPGLEL 65
           +E  LE 
Sbjct: 141 SERSLEE 147


>gi|288574184|ref|ZP_06392541.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569925|gb|EFC91482.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 372

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CILC    CVE+CP D     +  L    ++CI C  C   CP +AI
Sbjct: 311 RCILC--GRCVEICPADAITMRDRRLVFDYEKCIRCYCCHEMCPANAI 356


>gi|195953290|ref|YP_002121580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932902|gb|ACG57602.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 279

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C++  CV VCP    Y+  +  + +    C  CG C   CP D    + 
Sbjct: 106 CNHCENPPCVPVCPTGATYKRQDGIVVVDNTICWGCGYCVNACPYDKRFMND 157


>gi|148657272|ref|YP_001277477.1| cyclic nucleotide-binding protein [Roseiflexus sp. RS-1]
 gi|148569382|gb|ABQ91527.1| cyclic nucleotide-binding protein [Roseiflexus sp. RS-1]
          Length = 482

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + + C  C+    CVE CP D     E+      D C  CG C P CP  A+  
Sbjct: 357 IADACRQCRVGAECVEACPEDAIVWNESGALFITDACNGCGACVPACPYHAVDM 410



 Score = 36.9 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 2/28 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG 29
              +T+ C  C    CV  CP       
Sbjct: 386 ALFITDACNGC--GACVPACPYHAVDMR 411


>gi|167899982|ref|ZP_02487383.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 7894]
          Length = 265

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|167916633|ref|ZP_02503724.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 112]
 gi|254187013|ref|ZP_04893528.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934696|gb|EDO90366.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 265

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|67641868|ref|ZP_00440634.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8 horse
           4]
 gi|217424178|ref|ZP_03455677.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 576]
 gi|251768078|ref|ZP_02269399.2| iron-sulfur cluster-binding protein [Burkholderia mallei PRL-20]
 gi|254182460|ref|ZP_04889054.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1655]
 gi|254205447|ref|ZP_04911800.1| iron-sulfur cluster-binding protein [Burkholderia mallei JHU]
 gi|254262448|ref|ZP_04953313.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1710a]
 gi|147755033|gb|EDK62097.1| iron-sulfur cluster-binding protein [Burkholderia mallei JHU]
 gi|184212995|gb|EDU10038.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1655]
 gi|217392643|gb|EEC32666.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 576]
 gi|238522879|gb|EEP86321.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8 horse
           4]
 gi|243060877|gb|EES43063.1| iron-sulfur cluster-binding protein [Burkholderia mallei PRL-20]
 gi|254213450|gb|EET02835.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1710a]
          Length = 276

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 83  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 136


>gi|150002944|ref|YP_001297688.1| putative hydrogenase [Bacteroides vulgatus ATCC 8482]
 gi|149931368|gb|ABR38066.1| putative hydrogenase [Bacteroides vulgatus ATCC 8482]
          Length = 583

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI     
Sbjct: 212 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVYIPV 271

Query: 61  PGLE 64
           P  E
Sbjct: 272 PCEE 275



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E+ +  I  ++CI CG C
Sbjct: 244 AWIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKC 303

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 304 MNACPFGAIF 313


>gi|323699800|ref|ZP_08111712.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323459732|gb|EGB15597.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 370

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           +  +NC  C+   C+  C     Y  E    I  +P++C+ CG C   C    ++ +   
Sbjct: 190 INPDNCQACE--ACLRACKTGALYIDETTGKIALNPEKCVGCGGCFVACRHGGLQVNWAV 247

Query: 62  GLELWLKINSEYAT 75
           G++ +L+   EYA 
Sbjct: 248 GVQDFLERMMEYAK 261


>gi|320100963|ref|YP_004176555.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Desulfurococcus mucosus DSM 2162]
 gi|319753315|gb|ADV65073.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus mucosus DSM 2162]
          Length = 637

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + C  C     +  CP      G     I  + C  CG+C   CP  AI    +P  
Sbjct: 572 VIEDKCTGCNACINLTACPAIVIPTGSRKPVILEELCAGCGLCASICPFKAISVKNQPST 631

Query: 64  ELWLKI 69
           E W K+
Sbjct: 632 E-WEKL 636


>gi|237731458|ref|ZP_04561939.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
 gi|226906997|gb|EEH92915.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
          Length = 205

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|291326157|ref|ZP_06123425.2| anaerobic dimethyl sulfoxide reductase, B subunit [Providencia
          rettgeri DSM 1131]
 gi|291315461|gb|EFE55914.1| anaerobic dimethyl sulfoxide reductase, B subunit [Providencia
          rettgeri DSM 1131]
          Length = 161

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           +T +C  C    C++VCP D + +  + + +   ++CI C +C   CP  A   D   
Sbjct: 31 FITMSCNHCDDPQCLKVCPADTYTKRADGIVVQDHEKCIGCQMCIMACPYHAPVFDPAE 89


>gi|163732626|ref|ZP_02140071.1| 4Fe-4S binding domain protein [Roseobacter litoralis Och 149]
 gi|161393986|gb|EDQ18310.1| 4Fe-4S binding domain protein [Roseobacter litoralis Och 149]
          Length = 252

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGVMK 140


>gi|110678320|ref|YP_681327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseobacter denitrificans OCh 114]
 gi|109454436|gb|ABG30641.1| 4Fe-4S binding domain protein [Roseobacter denitrificans OCh 114]
          Length = 252

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGVMK 140


>gi|260437208|ref|ZP_05791024.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810521|gb|EFF69726.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876]
          Length = 481

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y VT+NC  C    C+  C       GE+   I   +C +CG+C   CP +AI  
Sbjct: 92  SYTVTDNCQNCPGKACINACKFGAISTGEHHSKIDGSKCKECGMCAKACPYNAIAH 147



 Score = 41.5 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +    C  C                  C   CPVD     E  +  I   +CI CG C  
Sbjct: 125 IDGSKCKECGMCAKACPYNAIAHLKRPCKFSCPVDAITYDEYGISVIDEKKCIRCGQCIH 184

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 185 KCPFGAI 191


>gi|271501139|ref|YP_003334164.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Dickeya dadantii Ech586]
 gi|270344694|gb|ACZ77459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          dadantii Ech586]
          Length = 208

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C +VCPV+     +N + +  + CI C +C   CP  AI
Sbjct: 51 CRHCEDAPCAKVCPVNAITHQDNAVLLDENTCIGCKLCAIACPFGAI 97


>gi|126458164|ref|YP_001077136.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1106a]
 gi|134281741|ref|ZP_01768448.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 305]
 gi|167908290|ref|ZP_02495495.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei NCTC 13177]
 gi|237507755|ref|ZP_04520470.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           MSHR346]
 gi|242312856|ref|ZP_04811873.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1106b]
 gi|126231932|gb|ABN95345.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1106a]
 gi|134246803|gb|EBA46890.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 305]
 gi|234999960|gb|EEP49384.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           MSHR346]
 gi|242136095|gb|EES22498.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1106b]
          Length = 265

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|53723318|ref|YP_112303.1| iron-sulfur cluster protein [Burkholderia pseudomallei K96243]
 gi|167924487|ref|ZP_02511578.1| iron-sulfur cluster protein [Burkholderia pseudomallei BCC215]
 gi|52213732|emb|CAH39786.1| iron-sulfur cluster protein [Burkholderia pseudomallei K96243]
          Length = 265

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|53715919|ref|YP_106560.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           23344]
 gi|76818979|ref|YP_336603.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1710b]
 gi|121597376|ref|YP_990671.1| iron-sulfur cluster-binding protein [Burkholderia mallei SAVP1]
 gi|126443292|ref|YP_001064213.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 668]
 gi|167829879|ref|ZP_02461350.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 9]
 gi|226199217|ref|ZP_03794777.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei Pakistan 9]
 gi|254176209|ref|ZP_04882867.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           10399]
 gi|254192604|ref|ZP_04899043.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei S13]
 gi|254203576|ref|ZP_04909937.1| iron-sulfur cluster-binding protein [Burkholderia mallei FMH]
 gi|254296602|ref|ZP_04964058.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 406e]
 gi|52421889|gb|AAU45459.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           23344]
 gi|76583452|gb|ABA52926.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1710b]
 gi|121225174|gb|ABM48705.1| iron-sulfur cluster-binding protein [Burkholderia mallei SAVP1]
 gi|126222783|gb|ABN86288.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 668]
 gi|147745815|gb|EDK52894.1| iron-sulfur cluster-binding protein [Burkholderia mallei FMH]
 gi|157806448|gb|EDO83618.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 406e]
 gi|160697251|gb|EDP87221.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           10399]
 gi|169649362|gb|EDS82055.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei S13]
 gi|225928624|gb|EEH24651.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei Pakistan 9]
          Length = 265

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|322641062|gb|EFY37706.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
          Length = 205

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + ++
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNS 118


>gi|322616397|gb|EFY13306.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619647|gb|EFY16522.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622657|gb|EFY19502.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322637033|gb|EFY33736.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641606|gb|EFY38243.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644439|gb|EFY40979.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649591|gb|EFY46022.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654107|gb|EFY50430.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322663496|gb|EFY59698.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670232|gb|EFY66372.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671468|gb|EFY67590.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676824|gb|EFY72891.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682749|gb|EFY78768.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686428|gb|EFY82410.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323199761|gb|EFZ84850.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323209025|gb|EFZ93962.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323215841|gb|EGA00582.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323226862|gb|EGA11045.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229816|gb|EGA13939.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233041|gb|EGA17137.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240776|gb|EGA24818.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323258529|gb|EGA42199.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323267980|gb|EGA51459.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 205

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + ++
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNS 118


>gi|309784012|ref|ZP_07678656.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
 gi|308928155|gb|EFP73618.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
          Length = 152

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 31 AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 89


>gi|73532680|dbj|BAE19898.1| tetrathionate reductase subunit B [Edwardsiella tarda]
          Length = 188

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCPV   Y+ ++ +  +    C+ C  C   CP DA
Sbjct: 61  CNHCENPPCVAVCPVQATYQRDDGIVMVDNRRCVGCAYCIQACPYDA 107


>gi|320085202|emb|CBY94988.1| Protein nrfC Flags: Precursor [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 205

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|261253250|ref|ZP_05945823.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio orientalis
           CIP 102891]
 gi|260936641|gb|EEX92630.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio orientalis
           CIP 102891]
          Length = 209

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    ++ E   F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCTNPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  E 60
           E
Sbjct: 122 E 122


>gi|145591154|ref|YP_001153156.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282922|gb|ABP50504.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 232

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V+  C  C+   C  VCP    Y+    +  ++ D CI CG C   CP  +        
Sbjct: 64  FVSSLCYHCEDAPCQRVCPTGATYKTPEGVVLVNKDLCIGCGYCIIACPYGS--RYRPEP 121

Query: 63  LELWLKINSEYATQWPNITTKKES---LPSAAKMD 94
            E     N     +    T         P   K  
Sbjct: 122 HEWHEAENKPLVKEVEPATQYGGVLFKPPVPNKWA 156


>gi|59713264|ref|YP_206039.1| oxidoreductase, Fe-S subunit [Vibrio fischeri ES114]
 gi|197337765|ref|YP_002157662.1| dimethylsulfoxide reductase, chain B [Vibrio fischeri MJ11]
 gi|59481512|gb|AAW87151.1| oxidoreductase, Fe-S subunit [Vibrio fischeri ES114]
 gi|197315017|gb|ACH64466.1| dimethylsulfoxide reductase, chain B [Vibrio fischeri MJ11]
          Length = 204

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++  C  C    C +VCP    ++ E+  + +  + CI C  C   CP  A + + E
Sbjct: 59  SYYLSIACNHCDEPACTKVCPSGAMHKREDGFVVVDEEVCIGCKYCTMACPYGAPQYNEE 118


>gi|282600278|ref|ZP_05973699.2| anaerobic dimethyl sulfoxide reductase, B subunit [Providencia
          rustigianii DSM 4541]
 gi|282565941|gb|EFB71476.1| anaerobic dimethyl sulfoxide reductase, B subunit [Providencia
          rustigianii DSM 4541]
          Length = 161

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           +T +C  C    C++VCP + + +  + + +   ++CI C +C   CP  A   D   
Sbjct: 31 FITMSCNHCDDPQCLKVCPANTYSKRADGIVVQDHEKCIGCQMCIMACPYHAPVFDPAE 89


>gi|163794603|ref|ZP_02188574.1| DMSO reductase chain B [alpha proteobacterium BAL199]
 gi|159180327|gb|EDP64850.1| DMSO reductase chain B [alpha proteobacterium BAL199]
          Length = 271

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+ E    + ++ D CI C +C   C   A + D E G+  
Sbjct: 90  SCLHCETPACVTVCPTGASYKREEDGIVLVNEDLCIGCKLCSWACAYGAREYDHEDGVMK 149


>gi|152991176|ref|YP_001356898.1| molybdopterin oxidoreductase, iron sulfur subunit [Nitratiruptor
           sp. SB155-2]
 gi|151423037|dbj|BAF70541.1| molybdopterin oxidoreductase, iron sulfur subunit [Nitratiruptor
           sp. SB155-2]
          Length = 519

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C    C++ CP + + + EN + I   + CI C  C   CP D      E  
Sbjct: 87  SCNHCIDPACLKGCPTNSYIKIENGIVIHDDEACIGCQYCTWNCPYDVPVFHEERH 142



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 14/71 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDAIKP 57
           E CI C++  C   CP D     E    +   +C  C           C   CP  AI+ 
Sbjct: 118 EACIGCQY--CTWNCPYDVPVFHEERHIV--TKCHMCYERIEANQTPACVQACPEGAIEI 173

Query: 58  DTEPGLELWLK 68
           +    ++ WL 
Sbjct: 174 EA-VNIDEWLD 183


>gi|78062849|ref|YP_372757.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
 gi|77970734|gb|ABB12113.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
          Length = 248

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|73540389|ref|YP_294909.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72117802|gb|AAZ60065.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 237

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|307130319|ref|YP_003882335.1| hydrogenase 4, 4Fe-4S subunit [Dickeya dadantii 3937]
 gi|306527848|gb|ADM97778.1| hydrogenase 4, 4Fe-4S subunit [Dickeya dadantii 3937]
          Length = 208

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+     +N + +  + CI C +C   CP  AI
Sbjct: 51 CRHCEDAPCARVCPVNAIRHQDNAVLLDENTCIGCKLCAIACPFGAI 97


>gi|255322208|ref|ZP_05363354.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           showae RM3277]
 gi|255300581|gb|EET79852.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           showae RM3277]
          Length = 246

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  C++VCP    Y+  N +  ++  ECI C +C   CP  A
Sbjct: 95  CNHCENPACIDVCPTGASYQRSNGIVKVNSAECIGCALCAEACPYHA 141


>gi|253580083|ref|ZP_04857350.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848602|gb|EES76565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 303

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +E C  CK     + CPV      +  L I P+ECI CG C+ +CP  A+ 
Sbjct: 179 DSEKCRGCKKCQIEKSCPVHVPKLVDGKLYIDPEECIHCGRCKGKCPFGAVP 230



 Score = 34.2 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y+  E CI C    C   CP     E +N   I+    I     +      A+       
Sbjct: 208 YIDPEECIHC--GRCKGKCPFGAVPEYQNGYKIY----IGGRWGKRVSHGQALTRIFTEE 261

Query: 63  LELWLKINS 71
            E+   I  
Sbjct: 262 EEVMAVIEK 270


>gi|257790270|ref|YP_003180876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830451|ref|ZP_08163908.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|257474167|gb|ACV54487.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487918|gb|EGC90356.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 221

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C   +CV+VCP    ++ E+    I   +CI C  C   CP +    + E 
Sbjct: 58  YYLPVQCQHCADPECVKVCPTGASHKLEDGTVQIDKAKCIGCQFCAMSCPYNVRYLNEEE 117


>gi|221212642|ref|ZP_03585619.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD1]
 gi|221167741|gb|EEE00211.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD1]
          Length = 247

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|168229880|ref|ZP_02654938.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471724|ref|ZP_03077708.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|238911729|ref|ZP_04655566.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194458088|gb|EDX46927.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335482|gb|EDZ22246.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 205

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNE 118


>gi|167744330|ref|ZP_02417104.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 14]
          Length = 265

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|332702632|ref|ZP_08422720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552781|gb|EGJ49825.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 263

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C +  CV+ CP    ++      + I    CI CG C   CP  A    
Sbjct: 61  ACMHCDNPTCVQACPTGATWKDPATGMVEIDRGLCIGCGNCIAACPYGARYRH 113


>gi|254466651|ref|ZP_05080062.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium Y4I]
 gi|206687559|gb|EDZ48041.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium Y4I]
          Length = 258

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDHCIGCGLCAWSCPYGARELDLAEGVMK 140


>gi|303248954|ref|ZP_07335201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489677|gb|EFL49613.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 258

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   CV VCP    ++  + +  +    CI C  C   CP  A   + +       
Sbjct: 121 CNHCEQPMCVRVCPTQATFQRPDGIVMMDFHRCIGCRYCMAGCPFGARSFNFQDPRPFIH 180

Query: 68  KINSEYATQWPNITTKKE 85
             N  + T+   +  K +
Sbjct: 181 HFNPHFPTRMRGVVEKCD 198


>gi|227824895|ref|ZP_03989727.1| ferredoxin [Acidaminococcus sp. D21]
 gi|226905394|gb|EEH91312.1| ferredoxin [Acidaminococcus sp. D21]
          Length = 429

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V  + C  C    CV+ C V      +    I  D CIDCG C   CP  AI    EP  
Sbjct: 11 VEEDRCTGCLL--CVKKCLVQAIRVRDGKAVIISDRCIDCGECIRCCPTRAIAALVEPLE 68

Query: 64 E-LWLKINSEYATQ 76
          E    K+N   AT 
Sbjct: 69 ELKSYKVNIALATP 82


>gi|94266820|ref|ZP_01290483.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93452521|gb|EAT03113.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 345

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV--DAIKPDTEP 61
            +T +CI C    CV VCP +   E      I  ++CI CG CE  CP   DA++ +   
Sbjct: 104 FITADCIKC--GKCVHVCPTEAISEDNR---IAREKCIGCGNCEAICPPKVDAVRYEHNE 158

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSA---AKMDGVKQ 98
                + +    A    NI         A    +   V  
Sbjct: 159 KALDKI-LPQCLAAGAENIELHAAVPGDARILEEWRAVSD 197


>gi|20092114|ref|NP_618189.1| hypothetical protein MA3299 [Methanosarcina acetivorans C2A]
 gi|19917334|gb|AAM06669.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 438

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK     E CP+    +GEN    +P+ C +CG+C   C  +A
Sbjct: 330 PEKCIDCKICCVAEACPMGAVSKGENGAVHNPELCFNCGLCISRCKGEA 378


>gi|325288816|ref|YP_004264997.1| ferridoxin [Syntrophobotulus glycolicus DSM 8271]
 gi|324964217|gb|ADY54996.1| ferridoxin [Syntrophobotulus glycolicus DSM 8271]
          Length = 56

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T++CI C    CV+ CP +   EG++   I  D C DCGVC   C  +AI
Sbjct: 1  MAYVITDDCISC--GACVDECPANAISEGDSKYVIDADSCADCGVCVDACAANAI 53


>gi|260893735|ref|YP_003239832.1| 4Fe-4S ferredoxin [Ammonifex degensii KC4]
 gi|260865876|gb|ACX52982.1| 4Fe-4S ferredoxin [Ammonifex degensii KC4]
          Length = 317

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C    CV  CP    Y+ E+ +  I  + C     C   CP   I  + 
Sbjct: 127 SCMHCTDPACVRACPSGAIYKREDGIVLIDQNLCKGFKACILACPYKRIFWNE 179


>gi|256826506|ref|YP_003150465.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582649|gb|ACU93783.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 206

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           Y V+ +C  C +  C  VCP    ++      ++++ D+CI CG C   CP +A K D
Sbjct: 61  YHVSVSCNHCDNPACTGVCPTGAMHKNPETGLVSVNTDKCIGCGYCHMACPYNAPKVD 118


>gi|309776276|ref|ZP_07671265.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915956|gb|EFP61707.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 482

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+NC  C    C+  C  D  + GE+   I  D+C +CG C+  CP +AI
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGEDHAFIDYDKCKECGACKNACPFNAI 150



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            ++  + C  C                  C++ CPVD    GE+    I   +CI+CG C
Sbjct: 128 AFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAIRMGEDGLAKIDEAKCINCGAC 187

Query: 47  EPECPVDAIKPDT 59
           + +CP  AI+  +
Sbjct: 188 QAKCPFGAIEDMS 200


>gi|161503359|ref|YP_001570471.1| hypothetical protein SARI_01432 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864706|gb|ABX21329.1| hypothetical protein SARI_01432 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYSAPQY 116


>gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 607

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCPV C   +      I   EC+ CG C   C   AI   T
Sbjct: 540 SYVIDPEKCVGC--TACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVT 597

Query: 60  E 60
            
Sbjct: 598 P 598


>gi|254172099|ref|ZP_04878775.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
 gi|214033995|gb|EEB74821.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
          Length = 174

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           Y V  NC  C+   C+EVCP    ++ E+    +  D+CI C +C   CP    + D
Sbjct: 30 AYNVPMNCRHCEKAPCMEVCPTGAIFKDEDGAVLVDVDKCIGCKMCAIVCPFGIPEFD 87


>gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 631

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|254487223|ref|ZP_05100428.1| 4Fe-4S binding domain protein [Roseobacter sp. GAI101]
 gi|214044092|gb|EEB84730.1| 4Fe-4S binding domain protein [Roseobacter sp. GAI101]
          Length = 221

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D
Sbjct: 54  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELD 106


>gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
 gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
          Length = 635

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E+CI C    C + CP D           I+PD+CI CG+C   C   AI
Sbjct: 579 TYTINPEHCIGC--HLCAKNCPADAISGLVRKPHVINPDKCIKCGMCMARCKFKAI 632


>gi|86152690|ref|ZP_01070895.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85843575|gb|EAQ60785.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 220

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C +  C++ CP     + +  +  I    CI C  C   CP  A + + E
Sbjct: 67  AYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDSMCIGCKACAMACPYGAPQFNHE 126


>gi|330834494|ref|YP_004409222.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta
           subunit [Metallosphaera cuprina Ar-4]
 gi|329566633|gb|AEB94738.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta
           subunit [Metallosphaera cuprina Ar-4]
          Length = 605

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             V +E C  C  T C +   CP     E +    I+ +ECI CG C P CP  AI  + 
Sbjct: 537 AVVDSERCTGC--TICYDHFTCPAILKLENK-KAVINQNECIGCGACVPVCPYKAITLEG 593

Query: 60  EPGLELWLK 68
           E   E W +
Sbjct: 594 E-KPEGWDE 601


>gi|329998255|ref|ZP_08303009.1| dimethylsulfoxide reductase, chain B [Klebsiella sp. MS 92-3]
 gi|328538797|gb|EGF64875.1| dimethylsulfoxide reductase, chain B [Klebsiella sp. MS 92-3]
          Length = 191

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + + +
Sbjct: 46  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 105


>gi|322632472|gb|EFY29218.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
          Length = 162

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + ++
Sbjct: 17 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNS 75


>gi|307133273|ref|YP_003885289.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Dickeya dadantii 3937]
 gi|306530802|gb|ADN00733.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Dickeya dadantii 3937]
          Length = 664

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+ + C +VCP       ++ + +  ++CI C  C   CP  AI  +T
Sbjct: 56  CRHCEDSPCAKVCPTQALVRKQDGIQLVAEKCIGCKTCVLACPFGAISVET 106



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 12/69 (17%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECID---CGVCEPECPVDAIK 56
           V E CI CK   CV  CP          +G          CI       C   CP  A+ 
Sbjct: 83  VAEKCIGCK--TCVLACPFGAISVETQSQGAIAHKCD--LCIGRPEGQACVEACPTQALH 138

Query: 57  PDTEPGLEL 65
             +E  LE 
Sbjct: 139 LVSERSLEE 147


>gi|145589578|ref|YP_001156175.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047984|gb|ABP34611.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 218

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           V+  C+ C    C+ VCPVDCFY  +  +     D CI CG C   CP  A + +T+
Sbjct: 52  VSVACMHCTDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSLACPFGAPQFETK 108


>gi|62179489|ref|YP_215906.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62127122|gb|AAX64825.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|310828304|ref|YP_003960661.1| hypothetical protein ELI_2717 [Eubacterium limosum KIST612]
 gi|308740038|gb|ADO37698.1| hypothetical protein ELI_2717 [Eubacterium limosum KIST612]
          Length = 375

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V+ + C  CK   C ++C ++          I  D+C+ CG C   CP DAI     P
Sbjct: 190 PHVIEKKCRDCK--VCKDICAMNAISY-PEKAVIDHDKCVGCGRCIGICPFDAIAT---P 243

Query: 62  GLELWLKINSEYATQ 76
             E +  +N + A  
Sbjct: 244 NDESFDVLNKKMAEY 258


>gi|153836556|ref|ZP_01989223.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AQ3810]
 gi|149750154|gb|EDM60899.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AQ3810]
          Length = 209

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    ++ E   F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCTNPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  E 60
           E
Sbjct: 122 E 122


>gi|331001648|ref|ZP_08325171.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413369|gb|EGG92736.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 507

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C EVCP       +   F +I+ ++CI CG C   C  +AI   T P
Sbjct: 117 VTDGCQGCLAHPCSEVCPTGAVKIDKESGFSSINQEKCIKCGRCANVCAYNAIIVQTRP 175



 Score = 36.9 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           E CI C                  C   C +D     EN    I  D+C+ CG C   CP
Sbjct: 152 EKCIKCGRCANVCAYNAIIVQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVNCP 211

Query: 52  VDAI 55
             AI
Sbjct: 212 FGAI 215


>gi|325970707|ref|YP_004246898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324025945|gb|ADY12704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 369

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C   +CV++C  D     E    I  ++C+ CG C   CP DAI  +     
Sbjct: 192 VDQSLCIGC--GNCVDICAHDAPMITEGLSWIDQNKCVGCGRCIGVCPTDAISNNDNSSN 249

Query: 64  ELWLKINSEYATQWPNI 80
           +    +N + A     I
Sbjct: 250 DK---LNCKIAEYTHAI 263


>gi|283784717|ref|YP_003364582.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter
           rodentium ICC168]
 gi|282948171|emb|CBG87738.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter
           rodentium ICC168]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    C +VCP    ++ E+  + +  + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCADPACTKVCPSGAMHKREDGFVVVDEEVCIGCRYCHMACPYGAPQY 116


>gi|225572042|ref|ZP_03780906.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040477|gb|EEG50723.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM
           10507]
          Length = 501

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+ +CP       + +  I   +CI CG C+  CP DAI   T P
Sbjct: 115 YEVSNICKGCVAHPCMLICPKGAISMVDGYSHIDQTKCIKCGKCKSVCPYDAISHKTRP 173



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
           +++    CI C                  C   C V+     +     I  D+C+ CG+C
Sbjct: 145 SHIDQTKCIKCGKCKSVCPYDAISHKTRPCERACGVNAITSDQQGRATILNDKCVSCGMC 204

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 205 MVSCPFGAI 213


>gi|156933919|ref|YP_001437835.1| hypothetical protein ESA_01745 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532173|gb|ABU76999.1| hypothetical protein ESA_01745 [Cronobacter sakazakii ATCC BAA-894]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|160878251|ref|YP_001557219.1| ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
 gi|160426917|gb|ABX40480.1| Ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
          Length = 484

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+NC  C    C + C         +   I P +C +CG+C   CP +AI
Sbjct: 95  FLVTDNCQKCMGKRCQKACNFQAISMSHDRAHIDPAKCKECGMCASACPYNAI 147



 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            ++    C  C                  C + CPVD     EN  + I  ++CI+CG C
Sbjct: 125 AHIDPAKCKECGMCASACPYNAIADLKRPCKKSCPVDAISMDENNIVVIDEEKCINCGQC 184

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 185 INNCPFGAI 193



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID 42
           +  E CI C    C+  CP     +    + +     ID
Sbjct: 173 IDEEKCINC--GQCINNCPFGAISDRSFMVDVINLLSID 209


>gi|16760365|ref|NP_455982.1| dimethyl sulfoxide reductase subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141871|ref|NP_805213.1| dimethyl sulfoxide reductase subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420773|ref|ZP_03353839.1| putative dimethyl sulfoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213609856|ref|ZP_03369682.1| putative dimethyl sulfoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213865404|ref|ZP_03387523.1| putative dimethyl sulfoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|25285318|pir||AG0680 probable dimethyl sulphoxide reductase chain STY1567 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502660|emb|CAD01816.1| putative dimethyl sulphoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137499|gb|AAO69062.1| putative dimethyl sulfoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|333006700|gb|EGK26199.1| dimethylsulfoxide reductase, chain B [Shigella flexneri VA-6]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCHYCHMACPYGAPQYNE 118


>gi|320450082|ref|YP_004202178.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermus scotoductus SA-01]
 gi|320150251|gb|ADW21629.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermus scotoductus SA-01]
          Length = 258

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C H  CV  CP       E  +  +    CI C  C   CP +A+  D 
Sbjct: 77  SCMHCTHAPCVASCPTGAMAHREGGVVTVDEKTCIGCRSCVQACPYEAVHFDE 129



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAIK 56
           V  + CI C+   CV+ CP +  +  E    +H                C   CP DA+ 
Sbjct: 105 VDEKTCIGCR--SCVQACPYEAVHFDEARGVVHKCTMCYDRISNGDQPACVKACPTDALT 162

Query: 57  PDTEPGLELWLK 68
             T   +    +
Sbjct: 163 FGTYQEIRAMAE 174


>gi|307719238|ref|YP_003874770.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM
           6192]
 gi|306532963|gb|ADN02497.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM
           6192]
          Length = 371

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + C  C +  C  VCPV C    +         CI C  C   CP +AI+      L
Sbjct: 306 VIEDRCRRCGY--CARVCPVSCITM-DGLPVWDYSRCIYCYCCHENCPHEAIELKEPLLL 362

Query: 64  ELWLKI 69
            L+   
Sbjct: 363 RLYRAF 368


>gi|268678836|ref|YP_003303267.1| cobyrinic acid ac-diamide synthase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616867|gb|ACZ11232.1| Cobyrinic acid ac-diamide synthase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 292

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++  E C  C    C +VC  D          +    C  CG CE  C ++AI  +   
Sbjct: 62  AHIDPETCRNC--GRCAKVCRFDAIVLENGRYVVDELSCEGCGYCEKVCRLNAISMNERL 119

Query: 62  GLELW 66
               +
Sbjct: 120 AGAWF 124


>gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 631

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
 gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
          Length = 620

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C+ C  T C   CPV     E +    +H ++CI CG C   C   AIK D
Sbjct: 567 VIEEKCVGC--TACKRACPVGAITGEVKQKHFVHQEKCIKCGQCFSACKFSAIKKD 620


>gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 631

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +TE CI C  T C   CPV C   + +    I  + CI CG C   CPV A+
Sbjct: 577 FYITEKCIGC--TKCARNCPVSCISGKVKERHVIDTEACIKCGNCMAVCPVGAV 628



 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE 28
           + TE CI C   +C+ VCPV    +
Sbjct: 608 IDTEACIKC--GNCMAVCPVGAVIK 630


>gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 631

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 592

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ + C+ C    C  VCPV     E +    I P++CI CG C  +C   AI
Sbjct: 539 ILEDKCVGC--GACARVCPVGAISGERKQPHQIDPEKCIKCGSCMEKCKFGAI 589


>gi|294677802|ref|YP_003578417.1| dimethyl sulfoxide reductase subunit B [Rhodobacter capsulatus SB
           1003]
 gi|294476622|gb|ADE86010.1| dimethyl sulfoxide reductase, B subunit [Rhodobacter capsulatus SB
           1003]
          Length = 238

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C+ C++  CV VCP     +  + L  I    C+ CG+C   CP  A + D
Sbjct: 78  CVHCENPPCVPVCPTGASQQTADGLVQIDASRCLGCGLCAWACPYGARELD 128


>gi|256830862|ref|YP_003159590.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256580038|gb|ACU91174.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 369

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E+C  C    CVEVC          + ++I  D+C  C  C   C    ++ D    + 
Sbjct: 192 PEHCTGC--GHCVEVCSHGALTLDLNSKISIDRDKCAGCAACFLVCRSGGLEVDWRVDVN 249

Query: 65  LWLKINSEYAT 75
            +L+  +EYA 
Sbjct: 250 TFLERMAEYAA 260


>gi|153831858|ref|ZP_01984525.1| dimethylsulfoxide reductase, chain B [Vibrio harveyi HY01]
 gi|260902011|ref|ZP_05910406.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AQ4037]
 gi|269963677|ref|ZP_06177999.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|148871856|gb|EDL70679.1| dimethylsulfoxide reductase, chain B [Vibrio harveyi HY01]
 gi|269831589|gb|EEZ85726.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|308107733|gb|EFO45273.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AQ4037]
 gi|328473766|gb|EGF44601.1| anaerobic dimethyl sulfoxide reductase subunit B [Vibrio
           parahaemolyticus 10329]
          Length = 209

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    ++ E   F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCTNPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  E 60
           E
Sbjct: 122 E 122


>gi|54301686|ref|YP_131679.1| putative tetrathionate reductase, subunit B [Photobacterium
           profundum SS9]
 gi|46915106|emb|CAG21879.1| putative tetrathionate reductase, subunit B [Photobacterium
           profundum SS9]
          Length = 222

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV+VCPV   Y+ E+ +  +    C+ C  C   CP DA   + E
Sbjct: 110 CNHCDNPPCVKVCPVQATYQREDGIVMVDNKRCVACAYCVQACPYDARFINEE 162


>gi|148266186|ref|YP_001232892.1| sigma-54 dependent trancsriptional regulator [Geobacter
          uraniireducens Rf4]
 gi|146399686|gb|ABQ28319.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          uraniireducens Rf4]
          Length = 755

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          TE C  C    CV  CPV      +N+  I  + CI CG C   CP  A
Sbjct: 8  TEKCRKCY--SCVRSCPVKAIKVEKNYSEIIFERCIGCGNCLSNCPQHA 54


>gi|163845623|ref|YP_001633667.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222523325|ref|YP_002567795.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163666912|gb|ABY33278.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447204|gb|ACM51470.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           sp. Y-400-fl]
          Length = 318

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            +   C+ C +  C  VCPV   +  E+ +  +  ++CI C  C   CP  A   D
Sbjct: 149 FIPRPCMQCDNPPCTGVCPVSATFTNEHGVVEVDYEQCIGCRACIAACPYGARTFD 204


>gi|299131979|ref|ZP_07025174.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298592116|gb|EFI52316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 252

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++ D CI C +C   CP  A + D + G+  
Sbjct: 79  SCLHCEEPACVTVCPTGASYKRTEDGIVLVNADTCIGCKLCSWACPYGAREFDEDDGVMK 138


>gi|293404203|ref|ZP_06648197.1| DmsB protein [Escherichia coli FVEC1412]
 gi|291428789|gb|EFF01814.1| DmsB protein [Escherichia coli FVEC1412]
          Length = 148

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A + + 
Sbjct: 3  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNE 61


>gi|293401574|ref|ZP_06645717.1| hypothetical protein
 gi|291305212|gb|EFE46458.1| [Fe] hydrogenase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 482

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+NC  C    C+  C  D  + G +   I  D+C +CG C+  CP +AI
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGNDHAFIDYDKCKECGACKNACPFNAI 150



 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 15/73 (20%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            ++  + C  C                  C++ CPVD    GE+    I  ++CI+CG C
Sbjct: 128 AFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAISMGESGLAEIDEEKCINCGAC 187

Query: 47  EPECPVDAIKPDT 59
           + +CP  AI+  +
Sbjct: 188 QAKCPFGAIEDMS 200


>gi|291279072|ref|YP_003495907.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
 gi|290753774|dbj|BAI80151.1| molybdopterin oxidoreductase, 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
          Length = 191

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +   C  C    CV VCP    ++ ++ +  I    CI C  C   CP DA   + E
Sbjct: 58  YFLPSQCNHCDDPPCVHVCPTKASHKRDDGIVYIDRGRCIGCKYCIVSCPYDARFFNEE 116


>gi|237654364|ref|YP_002890678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237625611|gb|ACR02301.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 212

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+ E+ +     D+CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYKTEDGVVLHDKDKCIGCGYCFYACPFGA 101


>gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
 gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
          Length = 906

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  E C  C    CV +CPV+       +    I  + CI CG C  +CP   I  + E
Sbjct: 850 IDEEKCRRC--GLCVRLCPVEAISGEVRKRPFVIDKNRCIACGACAQKCPAKCIAREEE 906


>gi|163757590|ref|ZP_02164679.1| iron-sulfur cluster-binding protein [Hoeflea phototrophica DFL-43]
 gi|162285092|gb|EDQ35374.1| iron-sulfur cluster-binding protein [Hoeflea phototrophica DFL-43]
          Length = 248

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV VCP    ++   +  + +  D CI CG+C   CP  A + D    +  
Sbjct: 81  SCLHCDDAPCVTVCPTGASHKRSEDGIVLVTEDMCIGCGLCAWACPYGAREMDPVENVMK 140


>gi|218779474|ref|YP_002430792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
            [Desulfatibacillum alkenivorans AK-01]
 gi|218760858|gb|ACL03324.1| Putative uncharacterized protein(contains glutamate synthase domain
            and a partial HdrA domain) [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1115

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            V  + C  C    CV VCP           G  +  +    C  CG C   CP +A   D
Sbjct: 1043 VDADRCRGC--GSCVAVCPYQAIGLKQNTVGGWYAFVDEALCKGCGNCISVCPNNA--AD 1098

Query: 59   TEPGLELWLKINSE 72
            +    + +L+   E
Sbjct: 1099 SPYRNQKYLEQMLE 1112



 Score = 34.2 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           YV  E C LC    CVE CPV         +
Sbjct: 105 YVDPERCTLC--GKCVEACPVTSADGCRPIV 133


>gi|289422669|ref|ZP_06424509.1| hydrogenase large subunit domain protein [Peptostreptococcus
           anaerobius 653-L]
 gi|289156848|gb|EFD05473.1| hydrogenase large subunit domain protein [Peptostreptococcus
           anaerobius 653-L]
          Length = 515

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  T  C  C    CVEVCP +          I  ++CI CG C+  CP  AI
Sbjct: 116 FFTTNTCRGCLARPCVEVCPKNAISMVNGKSFIDQEKCIKCGRCKSSCPYGAI 168



 Score = 41.9 bits (97), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
           +++  E CI C                  C   C +D     +     I  D+C+ CG+C
Sbjct: 146 SFIDQEKCIKCGRCKSSCPYGAIAKLERPCANACGMDAITSDKYGRAKIDYDKCVSCGLC 205

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 206 MSSCPFGAI 214


>gi|226327475|ref|ZP_03802993.1| hypothetical protein PROPEN_01346 [Proteus penneri ATCC 35198]
 gi|225204001|gb|EEG86355.1| hypothetical protein PROPEN_01346 [Proteus penneri ATCC 35198]
          Length = 158

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+ CP    +  +G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCDDPICVKNCPTTAMHKRKGDGIVMVDTDKCVGCGACAWSCPYGAPQMNP 130

Query: 60  EPGLE 64
           E    
Sbjct: 131 ETKQM 135


>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 631

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|62182754|ref|YP_219171.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130387|gb|AAX68090.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322717255|gb|EFZ08826.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 208

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++  C  C    CV  CP    ++   +  + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDT 118


>gi|257792191|ref|YP_003182797.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476088|gb|ACV56408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 203

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++V   C+ C++  CVE CP +   +   +  + +  ++CI C  C   CP  A      
Sbjct: 51  HIVPMLCMHCENPPCVEACPTEGATYKREDGIVVVDKEKCIGCKSCIMACPYGARYYREN 110

Query: 61  PGLELWLKINSEYATQWPNITT 82
                  ++N   A  +  +  
Sbjct: 111 EDGYFGTELNEYEAVMYTAMPQ 132


>gi|167994707|ref|ZP_02575798.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327472|gb|EDZ14236.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|168235580|ref|ZP_02660638.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736681|ref|YP_002114513.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712183|gb|ACF91404.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291183|gb|EDY30536.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|161503909|ref|YP_001571021.1| hypothetical protein SARI_01999 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865256|gb|ABX21879.1| hypothetical protein SARI_01999 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
 gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
          Length = 571

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +V + C  C  T C  VCPV       +    I  ++CI CG C  +C  DAI
Sbjct: 518 IVADKCRGC--TACARVCPVGAISGTVKQPHTIDVNKCIKCGACIEKCKFDAI 568


>gi|16764842|ref|NP_460457.1| dimethyl sulphoxide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167994479|ref|ZP_02575570.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168463083|ref|ZP_02697014.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197263256|ref|ZP_03163330.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420017|gb|AAL20416.1| putative dimethyl sulphoxide reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195634592|gb|EDX52944.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197241511|gb|EDY24131.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205327659|gb|EDZ14423.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261246698|emb|CBG24508.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993396|gb|ACY88281.1| putative dimethyl sulphoxide reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158027|emb|CBW17522.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312912480|dbj|BAJ36454.1| putative dimethylsulfoxide reductase B subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224115|gb|EFX49178.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322616115|gb|EFY13031.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620564|gb|EFY17426.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622965|gb|EFY19807.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322638773|gb|EFY35468.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322646573|gb|EFY43081.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649061|gb|EFY45502.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654577|gb|EFY50898.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322665179|gb|EFY61367.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667923|gb|EFY64083.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671665|gb|EFY67786.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677288|gb|EFY73352.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680048|gb|EFY76087.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|323129766|gb|ADX17196.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323200039|gb|EFZ85127.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205664|gb|EFZ90627.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323223624|gb|EGA07937.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232209|gb|EGA16315.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234380|gb|EGA18467.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237831|gb|EGA21890.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323255983|gb|EGA39723.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323266687|gb|EGA50174.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|332988379|gb|AEF07362.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|16759836|ref|NP_455453.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16764326|ref|NP_459941.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29142391|ref|NP_805733.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56413539|ref|YP_150614.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161614075|ref|YP_001588040.1| hypothetical protein SPAB_01814 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161614804|ref|YP_001588769.1| hypothetical protein SPAB_02556 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550363|ref|ZP_02344120.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168230859|ref|ZP_02655917.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168240816|ref|ZP_02665748.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168241021|ref|ZP_02665953.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168260336|ref|ZP_02682309.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168263549|ref|ZP_02685522.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466550|ref|ZP_02700412.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822934|ref|ZP_02834934.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442816|ref|YP_002040164.1| dimethylsulfoxide reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447792|ref|YP_002045535.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194449118|ref|YP_002044958.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470411|ref|ZP_03076395.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248038|ref|YP_002145883.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197249734|ref|YP_002146546.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197262363|ref|ZP_03162437.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362464|ref|YP_002142101.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198245763|ref|YP_002214889.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390940|ref|ZP_03217551.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927626|ref|ZP_03218827.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204930062|ref|ZP_03221083.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205352173|ref|YP_002225974.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856357|ref|YP_002243008.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224582775|ref|YP_002636573.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238913260|ref|ZP_04657097.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|25285315|pir||AC0612 anaerobic dimethyl sulfoxide reductase chain B [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16419477|gb|AAL19900.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16502129|emb|CAD05365.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138021|gb|AAO69582.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127796|gb|AAV77302.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161363439|gb|ABX67207.1| hypothetical protein SPAB_01814 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364168|gb|ABX67936.1| hypothetical protein SPAB_02556 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401479|gb|ACF61701.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406096|gb|ACF66315.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194407422|gb|ACF67641.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456775|gb|EDX45614.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631045|gb|EDX49631.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093941|emb|CAR59431.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197211741|gb|ACH49138.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197213437|gb|ACH50834.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197240618|gb|EDY23238.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197940279|gb|ACH77612.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603385|gb|EDZ01931.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204321056|gb|EDZ06257.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322968|gb|EDZ08164.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205271954|emb|CAR36798.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324652|gb|EDZ12491.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205334705|gb|EDZ21469.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339260|gb|EDZ26024.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205339785|gb|EDZ26549.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205340754|gb|EDZ27518.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347817|gb|EDZ34448.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205351194|gb|EDZ37825.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708160|emb|CAR32453.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224467302|gb|ACN45132.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261246182|emb|CBG23986.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992699|gb|ACY87584.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301157509|emb|CBW16999.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911953|dbj|BAJ35927.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223289|gb|EFX48358.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713958|gb|EFZ05529.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323129231|gb|ADX16661.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|326622642|gb|EGE28987.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627217|gb|EGE33560.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987857|gb|AEF06840.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|323142517|ref|ZP_08077333.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322412950|gb|EFY03853.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 278

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C  T C + CP+      E    I    CI CG C   CP  AI   +    
Sbjct: 218 VRKNACIGC--TKCAQNCPMRAITMHERQATIDRRLCIICGKCAHGCPKQAICYQSNLAK 275

Query: 64  EL 65
           E 
Sbjct: 276 EK 277


>gi|28898222|ref|NP_797827.1| anaerobic dimethyl sulfoxide reductase subunit B [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260361744|ref|ZP_05774771.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           K5030]
 gi|260878563|ref|ZP_05890918.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AN-5034]
 gi|260898976|ref|ZP_05907417.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           Peru-466]
 gi|28806439|dbj|BAC59711.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308087958|gb|EFO37653.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           Peru-466]
 gi|308091188|gb|EFO40883.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AN-5034]
 gi|308113620|gb|EFO51160.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           K5030]
          Length = 209

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    ++ E   F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCTNPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  E 60
           E
Sbjct: 122 E 122


>gi|256827766|ref|YP_003151725.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256583909|gb|ACU95043.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 235

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           MT++   +C +C++  CV+VCP    Y  E+ +  +  + C+ C  C   CP    + + 
Sbjct: 55  MTFL-PVSCQMCENPSCVKVCPTGASYVDEDGVVLVDYERCVGCRYCMSACPYGVRQFNW 113

Query: 60  EP 61
             
Sbjct: 114 GD 115


>gi|221067205|ref|ZP_03543310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|220712228|gb|EED67596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
          Length = 235

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV VCPV   ++  + +  +  + C+ CG C   CP DA   + E
Sbjct: 90  CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHE 142



 Score = 34.2 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 18/89 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIK 56
           V  E C+ C +  CV+ CP D  +              +  +       C   C   A  
Sbjct: 117 VDNERCVGCGY--CVQACPYDARFINHETQTADKCTFCEHRLEAGLLPACVESCVGGARV 174

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKE 85
                       +N  ++     I   K+
Sbjct: 175 IGD---------LNDAHSEINRRIEAHKD 194


>gi|168819257|ref|ZP_02831257.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|198244390|ref|YP_002215640.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207857002|ref|YP_002243653.1| anaerobic dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197938906|gb|ACH76239.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205343729|gb|EDZ30493.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206708805|emb|CAR33133.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|320086021|emb|CBY95795.1| Formate dehydrogenase-O, iron-sulfur subunit Formate
           dehydrogenase-O subunit beta; FDH-Z subunit beta;
           Aerobic formate dehydrogenase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|326623386|gb|EGE29731.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|161521067|ref|YP_001584494.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia multivorans ATCC 17616]
 gi|189352755|ref|YP_001948382.1| formate-dependent nitrite reductase Fe-S protein [Burkholderia
           multivorans ATCC 17616]
 gi|160345117|gb|ABX18202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189336777|dbj|BAG45846.1| formate-dependent nitrite reductase Fe-S protein [Burkholderia
           multivorans ATCC 17616]
          Length = 247

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|85859636|ref|YP_461838.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85722727|gb|ABC77670.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 59

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T++C+ C    C +VCP     EGE+   I P  C DCG C  +CP +AI P  E
Sbjct: 1  MAYVITDDCVAC--GSCQDVCPAGAISEGEDKYVIDPAVCTDCGTCAEQCPAEAIVPGEE 58


>gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 634

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++CI C  T C+  CPV     +      I+ D+CI CG+C   CP  AI
Sbjct: 574 YEVTDSCIGC--TKCLRACPVLAIKGKIREKHIINIDKCIRCGLCYEACPTKAI 625


>gi|154496907|ref|ZP_02035603.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC
           29799]
 gi|150273865|gb|EDN00978.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VTE C  C    C EVCP D            I  D+CI CG C   C   AI     P
Sbjct: 117 VTEGCQGCLAHPCEEVCPKDAIKLDRYNGRSHIDQDKCIKCGRCADVCSYKAIIIQERP 175



 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
           +++  + CI C                  C   C VD  +        I  D+C+ CG+C
Sbjct: 147 SHIDQDKCIKCGRCADVCSYKAIIIQERPCAVACGVDAIHTDINGKAEIDYDKCVSCGMC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|76666839|emb|CAJ31216.1| Hdr-like menaquinol-oxidizing enzyme, subunit A (HmeA) [uncultured
           sulfate-reducing bacterium]
          Length = 248

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           C  C +  C  VCPV   Y+ ++ + I     CI C  C   CP +    
Sbjct: 109 CNHCDNPPCALVCPVQATYKRKDGIVICDKHRCIGCRYCLIACPYNMRMF 158


>gi|295106207|emb|CBL03750.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 178

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +V   C  C+   C  VCP    Y  ++ +  + P++CI C  C   CP  A
Sbjct: 53  IVPTQCQHCEDAPCAAVCPTHATYVTDSGVVLVDPEKCIGCKYCMAACPYQA 104


>gi|224367283|ref|YP_002601446.1| FdhB1 [Desulfobacterium autotrophicum HRM2]
 gi|223689999|gb|ACN13282.1| FdhB1 [Desulfobacterium autotrophicum HRM2]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C+   C + CPVD   + +  + I    CI C  C   CP  AI
Sbjct: 74  VPVQCRHCEDAPCAQSCPVDAICQVDGVILIDDKRCIGCKSCMMACPFGAI 124


>gi|213022400|ref|ZP_03336847.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 217

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
 gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
          Length = 631

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|167550056|ref|ZP_02343814.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168236875|ref|ZP_02661933.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737930|ref|YP_002114017.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|200389576|ref|ZP_03216187.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|194713432|gb|ACF92653.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290223|gb|EDY29580.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199602021|gb|EDZ00567.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205325023|gb|EDZ12862.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|157145943|ref|YP_001453262.1| hypothetical protein CKO_01696 [Citrobacter koseri ATCC BAA-895]
 gi|157083148|gb|ABV12826.1| hypothetical protein CKO_01696 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++C  C+   C++VCP    +  E  +  +    CI C  C   CP      + +  +  
Sbjct: 111 QSCQHCEDAPCIDVCPTGASWRDERGIVRVDESRCIGCSYCIGACPYQVRYLNPQTKVAD 170

Query: 66  WLKINSE--YATQWPNI 80
                +E   A  +P I
Sbjct: 171 KCDFCAESRLAKGFPPI 187



 Score = 37.3 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 12/80 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAI 55
           V    CI C +  C+  CP    Y           + C +  +       C   CP  A+
Sbjct: 140 VDESRCIGCSY--CIGACPYQVRYLNPQTKVADKCDFCAESRLAKGFPPICVNACPEHAL 197

Query: 56  KP--DTEPGLELWLKINSEY 73
               +  P ++ WLK N  Y
Sbjct: 198 IFGREDSPEIQTWLKENKFY 217


>gi|160902190|ref|YP_001567771.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
 gi|160359834|gb|ABX31448.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
          Length = 485

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ ENC  C  T C  VCP +           I  ++CI CG C   C  +AI
Sbjct: 432 IIPENCTGC--TACARVCPTEAIQGELRKPHTIDQEKCIKCGSCYTTCRFNAI 482


>gi|327401132|ref|YP_004341971.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316640|gb|AEA47256.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 184

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +   C+ C    C++VCP+D  Y+  + +  ++ D+CI CG C   CP  A + +
Sbjct: 51  IPMPCMHCSDPACLKVCPMDAIYKRPDGIVLVNKDKCIGCGYCSYACPFGAPQFE 105


>gi|257792756|ref|YP_003183362.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476653|gb|ACV56973.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 219

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C++ +CV+VCP +  +  ++    I   +CI C  C   CP      + E 
Sbjct: 59  YFLPVQCQHCENPECVKVCPTEASHIRDDGTVQIDKSKCIGCQFCAMACPYGVRYLNQEE 118

Query: 62  G 62
            
Sbjct: 119 R 119


>gi|160931195|ref|ZP_02078598.1| hypothetical protein CLOLEP_00033 [Clostridium leptum DSM 753]
 gi|156869807|gb|EDO63179.1| hypothetical protein CLOLEP_00033 [Clostridium leptum DSM 753]
          Length = 865

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E C  CK       CP+      +  + I    C  CG C  +CP  A++   +  
Sbjct: 717 VDLEKCRGCKVCQVENTCPIKVAKVRDGKVVIDDSICNHCGRCVGKCPFKAVEAHQDGY 775


>gi|121613356|ref|YP_001001226.1| dimethylsulfoxide reductase, chain B [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006119|ref|ZP_02271877.1| dimethylsulfoxide reductase, chain B [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249630|gb|EAQ72589.1| dimethylsulfoxide reductase, chain B [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|107770406|gb|ABF83738.1| anaerobic dimethyl sulfoxide reductase subunit B-like protein
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 218

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C +  C++ CP     + +  +  I    CI C  C   CP  A + + E
Sbjct: 65  AYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDSMCIGCKACAMACPYGAPQFNHE 124


>gi|205352798|ref|YP_002226599.1| anaerobic dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272579|emb|CAR37483.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627867|gb|EGE34210.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 205

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|323964173|gb|EGB59657.1| nitrate reductase [Escherichia coli M863]
          Length = 1760

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1    MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 1422 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 1480

Query: 59   TE 60
             +
Sbjct: 1481 WK 1482


>gi|317489038|ref|ZP_07947565.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831036|ref|ZP_08164360.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|316911905|gb|EFV33487.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486957|gb|EGC89403.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 219

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C++ +CV+VCP +  +  ++    I   +CI C  C   CP      + E 
Sbjct: 59  YFLPVQCQHCENPECVKVCPTEASHIRDDGTVQIDKSKCIGCQFCAMACPYGVRYLNQEE 118

Query: 62  G 62
            
Sbjct: 119 R 119


>gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 629

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV+ E+C+ C    C + CP     E      I PD C  CG C   CPV AI  +   G
Sbjct: 561 YVIGEDCVQC--GWCRDTCPHGAILEKREGFYIEPDLCQRCGACLGVCPVGAIYLEAAGG 618

Query: 63  LELW 66
            + W
Sbjct: 619 EKPW 622


>gi|83590609|ref|YP_430618.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83573523|gb|ABC20075.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 205

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          V T+ C  C+   C  VCPV           + P+ C  C  CE  CP  A+  
Sbjct: 10 VDTDKCKGCR--TCERVCPVLAIKVVNRKAVVDPERCRGCANCEQRCPDYAVTM 61


>gi|18312508|ref|NP_559175.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|4099070|gb|AAD00534.1| putative molybdopterin oxidoreductase iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|18159970|gb|AAL63357.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
          Length = 214

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V + C  C++  CV+ CP    Y+ E+ L  ++ D CI CG C   CP  A
Sbjct: 81  FVPKQCNHCENAPCVKPCPTGATYKTEDGLVLVNDDLCIGCGACIQACPYGA 132



 Score = 33.8 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 9/58 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDA 54
           V  + CI C    C++ CP    +       +                 C   CP  A
Sbjct: 113 VNDDLCIGC--GACIQACPYGARFFNPVKGVVDKCTFCSHRIYQGKLPACVETCPTGA 168


>gi|116754868|ref|YP_843986.1| methyl-viologen-reducing hydrogenase, delta subunit [Methanosaeta
           thermophila PT]
 gi|116666319|gb|ABK15346.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta
           thermophila PT]
          Length = 791

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + CI C+   CV+ CP       +    +    C  CG C   CPVDAI+     
Sbjct: 577 AFVDRDKCIGCRL--CVDTCPSRAISVKDT-AFVDEARCKGCGTCAAACPVDAIEMRLFS 633

Query: 62  GLELWLKINS 71
             ++  +I +
Sbjct: 634 DEQILAQIRA 643



 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 19/74 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV    C  C + +C   CPV+   E +                      I  + CI CG
Sbjct: 242 YVDPTLCKGCIN-ECSSACPVEVPNEYDFGLGKRKAIYMAIPQSVPLVACIDTNACIGCG 300

Query: 45  VCEPECPVDAIKPD 58
           +C   CP DA+K D
Sbjct: 301 LCAEACPADAVKYD 314


>gi|317489733|ref|ZP_07948235.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911167|gb|EFV32774.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 221

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C   +CV+VCP    ++ E+    I   +CI C  C   CP +    + E 
Sbjct: 58  YYLPVQCQHCADPECVKVCPTGASHKLEDGTVQIDKAKCIGCQFCAMSCPYNVRYLNEEE 117


>gi|240102880|ref|YP_002959189.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
 gi|239910434|gb|ACS33325.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
          Length = 204

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y V  NC  C++  C+EVCP    ++ E+    +   +CI C +C   CP    + DT
Sbjct: 60  AYNVPMNCRHCENAPCMEVCPTGAIFKDEDGAVLVDTSKCIGCKMCAIVCPFGIPEFDT 118


>gi|291326372|ref|ZP_06573930.1| tetrathionate reductase complex, subunit B [Providencia rettgeri
           DSM 1131]
 gi|291314566|gb|EFE55019.1| tetrathionate reductase complex, subunit B [Providencia rettgeri
           DSM 1131]
          Length = 252

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   ++ E+  + +  + C+ C  C   CP DA
Sbjct: 107 CNHCDNPPCVPVCPVQATFQREDGIVVVDNERCVGCAYCVQACPYDA 153



 Score = 33.8 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           V  E C+ C +  CV+ CP D  +   +             +
Sbjct: 134 VDNERCVGCAY--CVQACPYDARFINHSTQTADKCTFCAHRL 173


>gi|187934487|ref|YP_001886193.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722640|gb|ACD23861.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
          Length = 646

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   CPVDC     +    I  ++C  CG C   CPVDAI
Sbjct: 220 ITKKCIGC--GSCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269


>gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
 gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
          Length = 622

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CPV     E +    I   +CI CG C   C  DAI  +
Sbjct: 569 IDPDKCKGC--TKCARNCPVGAITGEKKEAHVIDTTKCIKCGACMEGCKFDAIYAE 622


>gi|157415803|ref|YP_001483059.1| hypothetical protein C8J_1484 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386767|gb|ABV53082.1| hypothetical protein C8J_1484 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748441|gb|ADN91711.1| Anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931264|gb|EFV10234.1| dimethylsulfoxide reductase, chain B [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 218

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C +  C++ CP     + +  +  I    CI C  C   CP  A + + E
Sbjct: 65  AYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDSMCIGCKACAMACPYGAPQFNHE 124


>gi|226327317|ref|ZP_03802835.1| hypothetical protein PROPEN_01184 [Proteus penneri ATCC 35198]
 gi|225204535|gb|EEG86889.1| hypothetical protein PROPEN_01184 [Proteus penneri ATCC 35198]
          Length = 188

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+     +N + ++   CI C +C   CP  AI
Sbjct: 33 CRHCEDAPCARVCPVNAITHEDNMIFLNESLCIGCKLCGLVCPFGAI 79


>gi|66735109|gb|AAY53799.1| putative oxidoreductase [Campylobacter jejuni]
          Length = 219

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C +  C++ CP     + +  +  I    CI C  C   CP  A + + E
Sbjct: 65  AYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDSMCIGCKACAMACPYGAPQFNHE 124


>gi|300856106|ref|YP_003781090.1| nitroreductase family protein fused to ferredoxin
          domain-containing protein [Clostridium ljungdahlii DSM
          13528]
 gi|300436221|gb|ADK15988.1| nitroreductase family protein fused to ferredoxin domain protein
          [Clostridium ljungdahlii DSM 13528]
          Length = 272

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V +E CI C    CV+ C        +    I+   CI CG C   CP  A+  D E
Sbjct: 1  MMNVNSEKCIGC--GQCVKDCFARDIEIIDGKAKINNITCIKCGHCIAVCPKSAVSTD-E 57

Query: 61 PGLELWLKINSE 72
            +E   + N E
Sbjct: 58 YNMEDIKEYNKE 69


>gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
          Length = 584

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y +T+NC  C    C   CPV      +  +  I P+ CI CG CE  C  DA+
Sbjct: 530 YEITDNCKGC--GACARKCPVGAISGEKKKVHSIDPNVCIKCGKCEESCKFDAV 581


>gi|221196768|ref|ZP_03569815.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD2M]
 gi|221203437|ref|ZP_03576456.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD2]
 gi|221177371|gb|EEE09799.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD2]
 gi|221183322|gb|EEE15722.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD2M]
          Length = 247

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|89896497|ref|YP_519984.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89335945|dbj|BAE85540.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 187

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV+ CP    ++ +N L  ++ D CI C  C   CP DA + DTE
Sbjct: 67  CNHCADPACVKNCPTGAMHKDDNGLVSVNQDVCIGCKYCVWTCPYDAPEFDTE 119


>gi|15219265|ref|NP_178022.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)
           [Arabidopsis thaliana]
 gi|297842689|ref|XP_002889226.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           [Arabidopsis lyrata subsp. lyrata]
 gi|3929364|sp|Q42599|NDUS8_ARATH RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|666977|emb|CAA59061.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|3152573|gb|AAC17054.1| Match to NADH:ubiquinone oxidoreductase gb|X84318 from A.thaliana.
           ESTs gb|Z27005, gb|T04711, gb|T45078 and gb|Z28689 come
           from this gene [Arabidopsis thaliana]
 gi|15081697|gb|AAK82503.1| At1g79010/YUP8H12R_21 [Arabidopsis thaliana]
 gi|18252265|gb|AAL62013.1| At1g79010/YUP8H12R_21 [Arabidopsis thaliana]
 gi|21593880|gb|AAM65847.1| NADH dehydrogenase, putative [Arabidopsis thaliana]
 gi|110740838|dbj|BAE98516.1| hypothetical protein [Arabidopsis thaliana]
 gi|297335067|gb|EFH65485.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           [Arabidopsis lyrata subsp. lyrata]
 gi|332198072|gb|AEE36193.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 [Arabidopsis
           thaliana]
          Length = 222

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 120 EERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 178 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 210


>gi|313897910|ref|ZP_07831451.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312957445|gb|EFR39072.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 482

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+NC  C    C+  C  D  + GE+   I  D+C +CG C+  CP +AI
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGEDHAFIDYDKCKECGACKNACPFNAI 150



 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            ++  + C  C                  C++ CPVD    GE+    I   +CI+CG C
Sbjct: 128 AFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAIRMGEDGLAKIDEAKCINCGAC 187

Query: 47  EPECPVDAIKPDT 59
           + +CP  AI+  +
Sbjct: 188 QVKCPFGAIEDMS 200


>gi|317491979|ref|ZP_07950412.1| glutamate synthase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920004|gb|EFV41330.1| glutamate synthase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 687

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCP     + ++ + +  ++CI C  C   CP  A++  T P    
Sbjct: 56  CRHCEDAPCANVCPNHAIEKRDDSIQVIQEKCIGCKTCVVACPFGAMEVITHPAPSE 112



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF 26
           V+ E CI CK   CV  CP    
Sbjct: 82  VIQEKCIGCK--TCVVACPFGAM 102


>gi|225175870|ref|ZP_03729863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
 gi|225168794|gb|EEG77595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
          Length = 57

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MT+V+ E CI C    C   CPVD   EG++   I P+ CIDCG C   CPVDAI  ++
Sbjct: 1  MTHVINEECISC--GSCEPECPVDAITEGDDKYVIDPETCIDCGACAEVCPVDAIHEES 57


>gi|16767556|ref|NP_463171.1| anaerobic dimethylsulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|56416103|ref|YP_153178.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161617453|ref|YP_001591418.1| hypothetical protein SPAB_05310 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552241|ref|ZP_02345994.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991519|ref|ZP_02572618.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231324|ref|ZP_02656382.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237018|ref|ZP_02662076.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243727|ref|ZP_02668659.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263351|ref|ZP_02685324.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467011|ref|ZP_02700859.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821231|ref|ZP_02833231.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444405|ref|YP_002043556.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447805|ref|YP_002048297.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470496|ref|ZP_03076480.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736806|ref|YP_002117241.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249022|ref|YP_002149221.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265548|ref|ZP_03165622.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197365029|ref|YP_002144666.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198243354|ref|YP_002218197.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387281|ref|ZP_03213893.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205355074|ref|YP_002228875.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859459|ref|YP_002246110.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224586070|ref|YP_002639869.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238912763|ref|ZP_04656600.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|16422868|gb|AAL23130.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56130360|gb|AAV79866.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161366817|gb|ABX70585.1| hypothetical protein SPAB_05310 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403068|gb|ACF63290.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406109|gb|ACF66328.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456860|gb|EDX45699.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712308|gb|ACF91529.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630641|gb|EDX49253.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096506|emb|CAR62115.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197212725|gb|ACH50122.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243803|gb|EDY26423.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289949|gb|EDY29308.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937870|gb|ACH75203.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604379|gb|EDZ02924.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205274855|emb|CAR39918.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205323045|gb|EDZ10884.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330101|gb|EDZ16865.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334192|gb|EDZ20956.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337283|gb|EDZ24047.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342183|gb|EDZ28947.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347982|gb|EDZ34613.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206711262|emb|CAR35639.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224470598|gb|ACN48428.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261249404|emb|CBG27268.1| anaerobic dimethyl sulfoxide reductase chain A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267996633|gb|ACY91518.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301160798|emb|CBW20329.1| anaerobic dimethyl sulfoxide reductase chain A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312915407|dbj|BAJ39381.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088715|emb|CBY98473.1| putative dimethyl sulfoxide reductase chain B protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321223179|gb|EFX48249.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615461|gb|EFY12381.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618521|gb|EFY15410.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622066|gb|EFY18916.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627138|gb|EFY23930.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631097|gb|EFY27861.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637684|gb|EFY34385.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642495|gb|EFY39096.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322643629|gb|EFY40183.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650550|gb|EFY46958.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653503|gb|EFY49833.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659670|gb|EFY55913.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662120|gb|EFY58336.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666133|gb|EFY62311.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672553|gb|EFY68664.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675982|gb|EFY72053.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680467|gb|EFY76505.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684638|gb|EFY80642.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323132647|gb|ADX20077.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|323194622|gb|EFZ79814.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197169|gb|EFZ82309.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201714|gb|EFZ86778.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206228|gb|EFZ91190.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213238|gb|EFZ98040.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215610|gb|EGA00354.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222032|gb|EGA06418.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227899|gb|EGA12053.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229068|gb|EGA13197.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236321|gb|EGA20397.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237559|gb|EGA21620.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241775|gb|EGA25804.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248077|gb|EGA32014.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254592|gb|EGA38403.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258349|gb|EGA42026.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259627|gb|EGA43261.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265899|gb|EGA49395.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270342|gb|EGA53790.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625997|gb|EGE32342.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|326630229|gb|EGE36572.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
 gi|332991121|gb|AEF10104.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 208

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++  C  C    CV  CP    ++   +  + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDT 118


>gi|327310274|ref|YP_004337171.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermoproteus uzoniensis 768-20]
 gi|326946753|gb|AEA11859.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Thermoproteus uzoniensis 768-20]
          Length = 595

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YVV + C  C    C  V  C        +    I P  C  C +C   CP DAIKP   
Sbjct: 526 YVVADKCRSC--GICYNVLKC-YAIAKLPDGKAWIDPSLCSGCSMCAQVCPYDAIKPTEP 582

Query: 61  PGLELWLKI 69
             +  WL++
Sbjct: 583 EKVGKWLEL 591


>gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3]
 gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3]
          Length = 596

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C  C  T C  VCPV     G      I P  CI CG C  +C   AI   
Sbjct: 542 FINPEKCKGC--TLCARVCPVHAITGGRKIPHIIDPQACIRCGTCMEKCKFGAIYVH 596


>gi|294636934|ref|ZP_06715260.1| anaerobic dimethyl sulfoxide reductase, B subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089852|gb|EFE22413.1| anaerobic dimethyl sulfoxide reductase, B subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 121

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++ E+  + +    CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQY 116


>gi|94967486|ref|YP_589534.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549536|gb|ABF39460.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 729

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    C   CP        +       D+CI C  C   CP     P+ +     
Sbjct: 85  RCLHCLEPACTSACPTTALARMADGPVGYDADKCIGCRYCVWACPWGVPTPEWDSLTPK 143



 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC 43
             + CI C++  CV  CP        + L     +C  C
Sbjct: 114 DADKCIGCRY--CVWACPWGVPTPEWDSLTPKIKKCTHC 150


>gi|284165039|ref|YP_003403318.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284014694|gb|ADB60645.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 552

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C    C +VCP    +  +    +    D CI C  C+  CP        +     
Sbjct: 215 PCQHCTDAPCEKVCPTTARHTRDKDGLVLTDYDVCIGCRYCQVACPYGVNYFQWDEPDVA 274

Query: 66  WLKINSE 72
             +I+ E
Sbjct: 275 HEEISGE 281


>gi|261823787|ref|YP_003261893.1| oxidoreductase Fe-S binding subunit [Pectobacterium wasabiae
           WPP163]
 gi|261607800|gb|ACX90286.1| glutamate synthase, small subunit [Pectobacterium wasabiae WPP163]
          Length = 674

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P     + 
Sbjct: 56  CRHCEDAPCAGVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNPMNNSTIA 115

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 116 HKCDLCADRP 125



 Score = 34.6 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDC------GVCEPECPVDAIK 56
           V E CI CK   CV  CP        N +  +    +C  C        C   CP  A++
Sbjct: 83  VQEKCIGCK--SCVLACPFGAMSMVTNPMNNSTIAHKCDLCADRPEGQACVEACPTQALQ 140

Query: 57  PDTE 60
             +E
Sbjct: 141 LVSE 144


>gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
          Length = 596

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C  C  T C  VCPV     G      I P  CI CG C  +C   AI   
Sbjct: 542 FINPEKCKGC--TLCARVCPVHAITGGRKIPHIIDPQACIRCGTCMEKCKFGAIYVH 596


>gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
          Length = 631

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|187919644|ref|YP_001888675.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia phytofirmans PsJN]
 gi|187718082|gb|ACD19305.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 251

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDFDRCIGCKYCAWACPYGARELDE 125


>gi|114770214|ref|ZP_01447752.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
 gi|114549051|gb|EAU51934.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
          Length = 248

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGARELD 133


>gi|322631438|gb|EFY28196.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
          Length = 162

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 17 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 73


>gi|320161502|ref|YP_004174726.1| putative ferredoxin [Anaerolinea thermophila UNI-1]
 gi|319995355|dbj|BAJ64126.1| putative ferredoxin [Anaerolinea thermophila UNI-1]
          Length = 136

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAI 55
          MT+V+T  C+  +   C  VCPV+C   G+         I PD CIDCG C PECP +AI
Sbjct: 1  MTHVITSLCL--RDGGCATVCPVECIVPGQPVDEWPWYYIDPDTCIDCGACVPECPWEAI 58

Query: 56 KPDTEPGLELWLKINSEYA 74
           P+ E   +   K     +
Sbjct: 59 FPEDEVPSQFKAKEGQRLS 77


>gi|53728930|ref|ZP_00134519.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126209139|ref|YP_001054364.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae L20]
 gi|126097931|gb|ABN74759.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 205

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++  +    ++   CI C  C   CP DA + 
Sbjct: 60  AYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEYTCIGCRYCSMACPYDAPQY 116


>gi|309792281|ref|ZP_07686753.1| cyclic nucleotide-binding protein [Oscillochloris trichoides DG6]
 gi|308225822|gb|EFO79578.1| cyclic nucleotide-binding protein [Oscillochloris trichoides DG6]
          Length = 476

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 5   VTENCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + + C  C     CVE CP   F   E  + +    C  CG C P CP   +   T+   
Sbjct: 354 ILDACRQCTVGPECVEACPEHAFERTEEGVLLITQRCTGCGACIPACPYQVVSSITQEHF 413

Query: 64  ELWLKINSEYATQWPNITTKKESLPSA 90
           E       E  + W  +  + +  PSA
Sbjct: 414 EP------EALSLWKRLLRRFQPQPSA 434


>gi|325676247|ref|ZP_08155926.1| formate dehydrogenase beta subunit [Rhodococcus equi ATCC 33707]
 gi|325552808|gb|EGD22491.1| formate dehydrogenase beta subunit [Rhodococcus equi ATCC 33707]
          Length = 315

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I     P  +
Sbjct: 126 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQNDICNGCGYCIPACPYGVIDRRDGPAGD 185

Query: 65  LWLKINSE 72
             + +  +
Sbjct: 186 PAVGLAQK 193


>gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
 gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
          Length = 596

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C  C  T C  VCPV     G      I P  CI CG C  +C   AI   
Sbjct: 542 FINPEKCKGC--TLCARVCPVHAITGGRKIPHIIDPQACIRCGTCMEKCKFGAIYVH 596


>gi|260588669|ref|ZP_05854582.1| iron-sulfur cluster-binding protein [Blautia hansenii DSM 20583]
 gi|331081982|ref|ZP_08331110.1| hypothetical protein HMPREF0992_00034 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541144|gb|EEX21713.1| iron-sulfur cluster-binding protein [Blautia hansenii DSM 20583]
 gi|330405577|gb|EGG85107.1| hypothetical protein HMPREF0992_00034 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 374

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C+ C    C ++C  D          I+ D+C+ CG C   CP DAI   ++ 
Sbjct: 190 PHVDQNLCVGC--QMCAKICAHDAPEFENKKATINHDKCVGCGRCIGVCPKDAILSASDE 247

Query: 62  GLELWLKINSEYATQWPNITTKKE 85
             E+   +N + A     +   + 
Sbjct: 248 SNEI---LNCKIAEYTKAVIDNRP 268


>gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 631

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|146297119|ref|YP_001180890.1| thiamine pyrophosphate binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410695|gb|ABP67699.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 598

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + E CI CK    V  CP     E +N + I    C  CG+C   CP  AI
Sbjct: 540 YRINEKCINCKACLNVTGCPAISEDEDKN-VFIDKTLCNGCGLCANFCPRMAI 591


>gi|257792484|ref|YP_003183090.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476381|gb|ACV56701.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 217

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           V   C+ C+   CV+ CP       ++ +  I  ++CI CG+C   CP  A
Sbjct: 55  VPNACVQCEKPACVDACPTGASVRRDDGITVIDYEKCIACGLCLAACPYGA 105


>gi|213616092|ref|ZP_03371918.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 203

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|281356040|ref|ZP_06242533.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548]
 gi|281317409|gb|EFB01430.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548]
          Length = 463

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ +C+ C    CV VCP            I   +CI+CG C   CP  AI  +  P
Sbjct: 111 VSNSCVGCFARPCVGVCPKQAIQVINQRSTIDRTKCINCGKCMTVCPYHAIIRNPLP 167



 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEP 48
           +    CI C                  C + CPV    +GE+    I    CI CG C  
Sbjct: 141 IDRTKCINCGKCMTVCPYHAIIRNPLPCEDACPVGAIGKGEDGRVRIDFKNCIYCGKCFR 200

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 201 ACPFSAIM 208


>gi|268680689|ref|YP_003305120.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618720|gb|ACZ13085.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 210

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C +VCPVDCFY  E+ +     ++CI CG C   CP  A
Sbjct: 56  ISIACMHCSDAPCSQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGA 106


>gi|223041240|ref|ZP_03611489.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           rectus RM3267]
 gi|222877499|gb|EEF12631.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           rectus RM3267]
          Length = 206

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  C++VCP    Y+  + +  +   ECI C +C   CP  A
Sbjct: 55  CNHCENPACIDVCPTGASYQRNSGIVKVDSAECIGCALCAEACPYHA 101


>gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
          Length = 596

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C  C  T C  VCPV     G      I P  CI CG C  +C   AI   
Sbjct: 542 FINPEKCKGC--TLCARVCPVHAITGGRKIPHIIDPQACIRCGTCMEKCKFGAIYVH 596


>gi|161170223|gb|ABX59194.1| FeS cluster containing hydrogenase components 1 [uncultured marine
           group II euryarchaeote EF100_57A08]
          Length = 470

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C+ + C  +CP    +  E+ +     D CI C  C   CP DA+  D
Sbjct: 57  RCNHCEDSPCTTICPTTALFTREDGIVDFDDDRCIGCKSCMQACPYDALYID 108



 Score = 37.3 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 9/56 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAI 55
           + CI CK   C++ CP D  Y   N                     C   CP +AI
Sbjct: 88  DRCIGCK--SCMQACPYDALYIDPNKGTAAKCNYCAHRIEHSYEPACVIVCPTEAI 141


>gi|89893633|ref|YP_517120.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89333081|dbj|BAE82676.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 205

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           + +  NC  C +  CV+ CPV   Y+  E+ L I   D+CI C +C   CP +A   + +
Sbjct: 58  HHIPLNCQHCGNPACVKACPVGATYKREEDGLVIQDYDKCIGCRMCMVACPYNARSFNWK 117


>gi|307323188|ref|ZP_07602398.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306890677|gb|EFN21653.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 341

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I    E 
Sbjct: 150 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQDDICNGCGYCVPACPYGVIDVRPED 206


>gi|213580783|ref|ZP_03362609.1| putative dimethyl sulfoxide reductase subunit [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 155

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 10 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 66


>gi|261407735|ref|YP_003243976.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Paenibacillus sp. Y412MC10]
 gi|261284198|gb|ACX66169.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. Y412MC10]
          Length = 78

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTE 60
          YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI    D  
Sbjct: 2  YVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAIFYFEDLP 61

Query: 61 PGLELWLKINSEYATQ 76
             + +     EY   
Sbjct: 62 EDQKHYFDKAVEYYKN 77


>gi|85857990|ref|YP_460192.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
 gi|85721081|gb|ABC76024.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
          Length = 265

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            + C+ C    CV+VCP    Y  E     I+  +CI C  C   CP D  + + E
Sbjct: 73  KDGCMHCTDAACVKVCPSGALYHTEYGTVGINQAKCIGCKYCISACPFDVPRYNPE 128


>gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium
           enrichment culture clone BF]
          Length = 597

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V +NC  C    C  VCP      E +    I   +CI CG C  +C  +AI
Sbjct: 544 IVADNCKGC--GACARVCPASAITGEKKEAHVIDTSKCIKCGSCIEKCKFNAI 594


>gi|296159919|ref|ZP_06842740.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
 gi|295889902|gb|EFG69699.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
          Length = 251

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDFDRCIGCKYCAWACPYGARELDE 125


>gi|291522007|emb|CBK80300.1| 4Fe-4S binding domain [Coprococcus catus GD/7]
          Length = 56

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C   CPV    EG+    I  + C+DCG C   CP +AI  +
Sbjct: 1  MAYVISDACVSC--GTCAGECPVGAISEGDGKYVIDANACLDCGSCAGACPTEAISQE 56


>gi|242278357|ref|YP_002990486.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242121251|gb|ACS78947.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 266

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E+C+ C    C E+CP       ++   I   +CI C  C  +CP  A      P  +
Sbjct: 191 VDESCVQC--GLCAEICPTGAIDAEDSS-VIDTVKCITCCACLKKCPNQARAMKDGPVKD 247

Query: 65  LWLKINSEYATQWPN 79
             +++N  +A     
Sbjct: 248 ARVRLNRLFAEPKEP 262


>gi|182417446|ref|ZP_02948773.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridium butyricum 5521]
 gi|237665843|ref|ZP_04525831.1| 4Fe-4S binding domain protein [Clostridium butyricum E4 str. BoNT
          E BL5262]
 gi|182378615|gb|EDT76142.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridium butyricum 5521]
 gi|237658790|gb|EEP56342.1| nitroreductase family protein [Clostridium butyricum E4 str. BoNT
          E BL5262]
          Length = 278

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V  + CI C    CV+ CPV      +N   I+ + C+ CG C   CPV+A+  D  
Sbjct: 1  MFKVNKDKCIGCS--QCVKDCPVRVISLIDNKAEINNNNCMKCGHCIAICPVNAVSTDDY 58

Query: 61 PGLE 64
             E
Sbjct: 59 NMEE 62


>gi|332880702|ref|ZP_08448375.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332681336|gb|EGJ54260.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 480

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C   CP D  +   E    I  ++CI CG C   CP  AI     P
Sbjct: 115 YEVTNLCRGCAARPCYNNCPKDAIHYDSEGKAYIDHEKCISCGRCHQVCPYHAIVYIPVP 174

Query: 62  GLEL 65
             E 
Sbjct: 175 CEEA 178



 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+  E CI C                  C E CPV    + E  +  I P++CI CG C
Sbjct: 146 AYIDHEKCISCGRCHQVCPYHAIVYIPVPCEEACPVKAISKDEYGVEHIDPEKCIYCGKC 205

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 206 LNACPFGAIF 215


>gi|224371568|ref|YP_002605732.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694285|gb|ACN17568.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 375

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C + CP+D          +  D CI CG+C   CP  AI  + +P 
Sbjct: 276 CTGC--GICKKRCPMDAISIKNKRAVLDLDRCIGCGLCVSTCPEKAIHLERKPE 327


>gi|328951685|ref|YP_004369020.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Marinithermus hydrothermalis DSM 14884]
 gi|328452009|gb|AEB12910.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Marinithermus hydrothermalis DSM 14884]
          Length = 1005

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C+   C  VCPV    ++ E    +  + CI    C   CP    + +       +
Sbjct: 823 PCMHCERAPCEPVCPVGATLHDSEGLNVMVYNRCIGTRYCSNNCPYKVRRFNFFDYANRF 882

Query: 67  LK 68
           L 
Sbjct: 883 LA 884


>gi|301064440|ref|ZP_07204859.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441450|gb|EFK05796.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 235

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V TE CI C+   C+E C ++     ++   I+ D CI CG+C   CP DA+  +  P
Sbjct: 141 VDTETCIGCE--TCLERCQMEALRMEDDHAVINRDRCIGCGLCVSTCPSDALHMERRP 196


>gi|296415821|ref|XP_002837584.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633457|emb|CAZ81775.1| unnamed protein product [Tuber melanosporum]
          Length = 232

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 130 EERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 187

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 188 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 220


>gi|260432364|ref|ZP_05786335.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416192|gb|EEX09451.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 249

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELD 133


>gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14]
 gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14]
          Length = 635

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           I+P++CI CG+C   C   AI
Sbjct: 579 TYTINPELCIGC--HLCAKNCPADAISGLVRKPHVINPEKCIKCGMCMARCKFKAI 632


>gi|212710427|ref|ZP_03318555.1| hypothetical protein PROVALCAL_01489 [Providencia alcalifaciens
          DSM 30120]
 gi|212686847|gb|EEB46375.1| hypothetical protein PROVALCAL_01489 [Providencia alcalifaciens
          DSM 30120]
          Length = 187

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP------DTEPG 62
          C  C    C  VCPV+        + ++   CI C +C   CP  AI P      DT   
Sbjct: 33 CRQCDDAPCARVCPVNAITHENGMIVLNESLCIGCKLCGLVCPFGAITPSGSKPVDTPDF 92

Query: 63 LELWL 67
           E ++
Sbjct: 93 FEQYV 97


>gi|218961763|ref|YP_001741538.1| putative electron transfer flavoprotein alpha-subunit (etfA and
          4Fe-4S ferredoxin modules) [Candidatus Cloacamonas
          acidaminovorans]
 gi|167730420|emb|CAO81332.1| putative electron transfer flavoprotein alpha-subunit (etfA and
          4Fe-4S ferredoxin modules) [Candidatus Cloacamonas
          acidaminovorans]
          Length = 398

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+ E C+ C    C+  C  D     E    I  D+C+ CG C   CP DAI
Sbjct: 3  MIEVLIEKCVGC--GACLRACAYDAIKIEEKLAIIDSDKCVLCGACVSACPFDAI 55


>gi|126732222|ref|ZP_01748023.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126707304|gb|EBA06369.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 249

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    ++   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASFKRTEDGIVLVNESDCIGCGLCAWACPYGARELDAAEGVMK 140


>gi|167948048|ref|ZP_02535122.1| polysulfide reductase, subunit B, putative [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 177

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          C  C +  C+ VCP    Y+ +N +  +  D C+ C  C   CP DA +  T   +E 
Sbjct: 27 CNHCDNPPCMSVCPTGATYKMDNGIVMVDEDLCMGCRACAMACPYDARRAVTYDDVEK 84


>gi|149194120|ref|ZP_01871218.1| formate dehydrogenase, iron-sulfur chain [Caminibacter
           mediatlanticus TB-2]
 gi|149136073|gb|EDM24551.1| formate dehydrogenase, iron-sulfur chain [Caminibacter
           mediatlanticus TB-2]
          Length = 197

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           + V+  C+ C    C +VCPVDCFY  E+ +     D+CI CG C   CP  A
Sbjct: 53  FSVSVACMHCTDAPCEQVCPVDCFYIREDGIVLHDKDKCIGCGYCLYACPFGA 105


>gi|219667648|ref|YP_002458083.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537908|gb|ACL19647.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 187

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV+ CP    ++ +N L  ++ D CI C  C   CP DA + DTE
Sbjct: 67  CNHCADPACVKNCPTGAMHKDDNGLVSVNQDVCIGCKYCVWTCPYDAPEFDTE 119


>gi|330996166|ref|ZP_08320056.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329573670|gb|EGG55261.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 480

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C   CP D  +   E    I  ++CI CG C   CP  AI     P
Sbjct: 115 YEVTNLCRGCAARPCYNNCPKDAIHYDSEGKAYIDHEKCISCGRCHQVCPYHAIVYIPVP 174

Query: 62  GLEL 65
             E 
Sbjct: 175 CEEA 178



 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+  E CI C                  C E CPV    + E  +  I P++CI CG C
Sbjct: 146 AYIDHEKCISCGRCHQVCPYHAIVYIPVPCEEACPVKAISKDEYGVEHIDPEKCIYCGKC 205

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 206 LNACPFGAIF 215


>gi|307594818|ref|YP_003901135.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
            distributa DSM 14429]
 gi|307550019|gb|ADN50084.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
            distributa DSM 14429]
          Length = 1226

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V    C+ C    CV+ CP             I+P  C  CG C  ECP  A+  D    
Sbjct: 1013 VDPGKCVGCLL--CVKACPYGAIKGEPGKPVTINPAACQGCGSCVGECPYGALDMDLLSD 1070

Query: 63   LELWLKINSEYAT 75
              +  ++ +  A 
Sbjct: 1071 DAILAQVEAALAE 1083



 Score = 36.9 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 13/68 (19%)

Query: 6  TENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDE---CIDCGVCEPECPVDA 54
           E CI      CV+ CP+             G +++ I P +   C+ CG+CE  CP +A
Sbjct: 22 PEMCIG--DELCVKRCPMGILELTREEVNPRGYHYVRIKPGKEVDCVACGICEKVCPTNA 79

Query: 55 IKPDTEPG 62
          I  + E  
Sbjct: 80 IYVEHEEE 87


>gi|283853853|ref|ZP_06371070.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283570750|gb|EFC18793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 250

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   CV+VCP    ++  + +  +    CI C  C   CP  A   + +       
Sbjct: 113 CNHCEAPMCVKVCPTQATFQRPDGIVMMDFHRCIGCRYCMAGCPYGARSFNFQDPRPFIH 172

Query: 68  KINSEYATQWPNITTKKE 85
             N  Y T+   +  K +
Sbjct: 173 DFNPLYPTRMRGVVEKCD 190


>gi|156974788|ref|YP_001445695.1| hypothetical protein VIBHAR_02506 [Vibrio harveyi ATCC BAA-1116]
 gi|156526382|gb|ABU71468.1| hypothetical protein VIBHAR_02506 [Vibrio harveyi ATCC BAA-1116]
          Length = 209

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    ++ E   F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCINPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  E 60
           E
Sbjct: 122 E 122


>gi|158319965|ref|YP_001512472.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140164|gb|ABW18476.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 635

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           MTY +    C+ C    C  VCPV            I    CI CG C  +C  +AI
Sbjct: 572 MTYTIFPSKCVGC--GVCARVCPVHAIRGVVKKPYHIDQATCIKCGACMDQCRFEAI 626



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + CP     +      I P +C+ CGVC   CPV AI
Sbjct: 560 EDRCPAGVC-KSFMTYTIFPSKCVGCGVCARVCPVHAI 596


>gi|83646717|ref|YP_435152.1| nitrate reductase subunit beta [Hahella chejuensis KCTC 2396]
 gi|83634760|gb|ABC30727.1| nitrate reductase, beta subunit [Hahella chejuensis KCTC 2396]
          Length = 510

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 183 CEHCLNPACVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWK 236


>gi|257062959|ref|YP_003142631.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790612|gb|ACV21282.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C++  C+  CP    Y+ E   + I  D+CI C +C   CP +A   + +    
Sbjct: 64  ACQHCENAACLRACPTGATYKDEEGRVEIDYDKCIGCRMCMAACPYNARTFNWKEPKR 121


>gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 599

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YV+ +  C+ C  T C  VCPV+           I  D CI CG C   C   AI   + 
Sbjct: 542 YVIDSAKCVGC--TACARVCPVNAISGEIRKTHVIDNDICIRCGSCIEVCRFGAISKVSP 599


>gi|149921106|ref|ZP_01909564.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis
           pacifica SIR-1]
 gi|149817993|gb|EDM77452.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis
           pacifica SIR-1]
          Length = 820

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           +C  CK+  C+  CP             I  + C  CG C   CP + I+ 
Sbjct: 366 SCQHCKNPSCMLDCPTGAVGRDPEGEVFIREELCTGCGACAKACPWENIRM 416


>gi|77918234|ref|YP_356049.1| putative iron-sulfur cluster-like protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544317|gb|ABA87879.1| putative iron-sulfur cluster-like protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 398

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y   + C  C    CV+ CP          L I    CI C  C+  CP  A+
Sbjct: 311 PYADPQLCRHC--GLCVKHCPPQAMVLKHGRLHIDYRRCIHCFCCQELCPYGAL 362


>gi|90425971|ref|YP_534341.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
 gi|90107985|gb|ABD90022.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 192

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP     +    + I   +CI C +C   CP  AI   +E  L     
Sbjct: 67  CRQCEDAPCTMVCPTGSCRQANGQIEIVEQQCIGCKLCVMVCPFGAITVRSEAKLGPSSI 126

Query: 69  INS------EYATQWPNITTKKES 86
            N       +  + W     K + 
Sbjct: 127 TNRGVAKKCDLCSDWRAANGKADP 150


>gi|219667254|ref|YP_002457689.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537514|gb|ACL19253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 197

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  CV+VCPV    + E+  + I  D CI C  C   CP DA   + E
Sbjct: 59  CNHCENPSCVKVCPVKATTQKEDGTVVIDYDLCIGCKYCIAACPYDARFINPE 111


>gi|315425433|dbj|BAJ47097.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Caldiarchaeum subterraneum]
          Length = 223

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V + C  C+   CVEVCPV+  ++  N    +  + CI CG C   CP  A
Sbjct: 90  FVPKMCNHCEEPSCVEVCPVNATFKAPNGEVLVDDNVCIGCGACIQNCPYGA 141



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 11/91 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDA-I 55
           V    CI C    C++ CP    +                         C   CP  A I
Sbjct: 122 VDDNVCIGC--GACIQNCPYGARFFNPVKGVADKCTLCRHRIYEGKLPACVEACPTGARI 179

Query: 56  KPDTEPGLELWLKINSEYAT-QWPNITTKKE 85
             D+        KI  E +  +W   T  K 
Sbjct: 180 FGDSNDPDSEVSKIVRESSFSRWKPWTGNKP 210


>gi|294085673|ref|YP_003552433.1| DMSO reductase subunit B [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665248|gb|ADE40349.1| DMSO reductase chain B [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 249

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+ E    + ++PD CI C +C   CP  A + D   G+  
Sbjct: 80  SCLHCEEPACVTVCPTGASYKREEDGIVLVNPDTCIGCKLCSWACPYGAREYDPSHGVMK 139


>gi|56698380|ref|YP_168753.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56680117|gb|AAV96783.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 268

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 100 SCLHCEDAPCVTVCPTGASYKRSEDGIVLVNESDCIGCGLCAWACPYGARELDLAEGVMK 159


>gi|34557325|ref|NP_907140.1| hypothetical protein WS0936 [Wolinella succinogenes DSM 1740]
 gi|34483041|emb|CAE10040.1| TTRB [Wolinella succinogenes]
          Length = 269

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   CV VCP    ++  +  + +    C  CG C   CP D
Sbjct: 110 CNHCEAPSCVSVCPTGATFKRTDGIVVVDNTICWGCGYCLNACPYD 155


>gi|320183165|gb|EFW58023.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           CDC 796-83]
 gi|332097171|gb|EGJ02154.1| anaerobic dimethyl sulfoxide reductase chain B domain protein
           [Shigella boydii 3594-74]
          Length = 122

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
            Y ++ +C  C+   C +VCP    ++ E+  + +  D CI C  C   CP  A+ 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGALN 115


>gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 628

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY +  E C  C  T C   CP +    E +    I P  CI CG+C   C  +AI 
Sbjct: 572 TYTIDPEKCRGC--TLCARKCPAEAISGEMKEPHVIDPQLCIKCGICFDSCKFEAIY 626



 Score = 34.2 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CP            I P++C  C +C  +CP +AI  + +   
Sbjct: 560 KKCPAGVCR-SLITYTIDPEKCRGCTLCARKCPAEAISGEMKEPH 603


>gi|150018616|ref|YP_001310870.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905081|gb|ABR35914.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 184

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + V   C  C++  C +VCP++     +N + I  + CI C  C   CP  AI+  T+  
Sbjct: 54  FTVPVQCRHCENAPCAKVCPINAIKNEDNAIIIDEEICIGCKACAVACPFGAIEMGTKYK 113

Query: 63  LELWLKINSEYATQWPNITTKK 84
               +  N +       +  K+
Sbjct: 114 DGKAVMQNVQKELFEEVLEEKE 135


>gi|323478558|gb|ADX83796.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 285

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  C EVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 95  YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 154

Query: 61  PGLEL 65
            G+  
Sbjct: 155 EGVTK 159


>gi|297571805|ref|YP_003697579.1| dimethylsulfoxide reductase, chain B [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932152|gb|ADH92960.1| dimethylsulfoxide reductase, chain B [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 212

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C++  C++VCP        +  + +   +C+ C  C+  CP  A + ++E
Sbjct: 67  AYYTSISCNHCENPVCMQVCPTTAMTRRPDGTVYVDESKCVGCRYCQWACPYGAPQLNSE 126

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            G      +  +Y ++  +          A     + +  EKY
Sbjct: 127 TGHMSKCDLCYDYRSEGKDPACVSACPSRALDWGPIDELREKY 169


>gi|15922151|ref|NP_377820.1| thiosulfate reductase electron transport protein PhsB [Sulfolobus
           tokodaii str. 7]
 gi|15622939|dbj|BAB66929.1| 270aa long hypothetical thiosulfate reductase electron transport
           protein phsB [Sulfolobus tokodaii str. 7]
          Length = 270

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  CV VCPV      E +  + +  +ECI    C   CP      D  
Sbjct: 87  YNIPINCFHCMNAPCVPVCPVGATFKREEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 146

Query: 61  PGLEL 65
            G+  
Sbjct: 147 EGVTK 151


>gi|307257755|ref|ZP_07539512.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863661|gb|EFM95587.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 205

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++  +    ++ D CI C  C   CP DA + 
Sbjct: 60  AYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEDTCIGCRYCSMACPYDAPQY 116


>gi|298507396|gb|ADI86119.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
          regulator, FehydlgC and FeS domain-containing
          [Geobacter sulfurreducens KN400]
          Length = 763

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MTYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  ++T+   C  C    CV  CPV      + +  I  D CI CG C   CP  A    
Sbjct: 1  MEPIITDKEKCRKCYC--CVRSCPVKAIKVEKRYTEIIFDRCIGCGNCLSNCPQRAKMVA 58

Query: 59 TE 60
           +
Sbjct: 59 DK 60


>gi|282600017|ref|ZP_05972741.2| hydrogenase-4 component A [Providencia rustigianii DSM 4541]
 gi|282566781|gb|EFB72316.1| hydrogenase-4 component A [Providencia rustigianii DSM 4541]
          Length = 187

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP------DTEPG 62
          C  C    C  VCPV+      + + ++   CI C +C   CP  AI P      D    
Sbjct: 33 CRQCDDAPCARVCPVNAITHENDMIVLNESLCIGCKLCGLVCPFGAITPSGSKPVDMPDF 92

Query: 63 LELWL 67
           E ++
Sbjct: 93 FEQYV 97


>gi|300087166|ref|YP_003757688.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526899|gb|ADJ25367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 275

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI---KPD 58
           + V++ C+ C H  CV VCPV    + EN  +     +CI C  C+  CP D       +
Sbjct: 68  HFVSKRCMHCIHPACVSVCPVGALQKLENGRVVWEEGKCIGCRYCQNACPFDIPKFSWYN 127

Query: 59  TEPGLELWLKI 69
            E   + W KI
Sbjct: 128 EEGETDPWPKI 138


>gi|268591456|ref|ZP_06125677.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291313110|gb|EFE53563.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 212

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+ CP    +  EG+  + ++ D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPMCVKNCPTTAMHKREGDGIVMVNTDKCVGCGTCAWSCPYGAPQMNP 130

Query: 60  EPGLE 64
           E    
Sbjct: 131 ETKQM 135


>gi|91202378|emb|CAJ72017.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 396

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           NC  C    CV  CP     +    + +   +CI C  C+  C   AI+ 
Sbjct: 327 NCTRCYE--CVRNCPAGAMSKDTGKVEVDKKKCIGCFCCDEVCDFHAIEM 374


>gi|217968807|ref|YP_002354041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217506134|gb|ACK53145.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 222

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y V  +C  C    C+  CP    ++      + I    CI C  CE  CP  A + D 
Sbjct: 78  AYKVNMSCNHCADPACLPTCPTGAIWKRADNGVVDIDSTLCIGCRRCEAACPYGAPQWDP 137

Query: 60  EPGLEL 65
              +  
Sbjct: 138 TEHIVK 143


>gi|149915672|ref|ZP_01904198.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810564|gb|EDM70407.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp.
           AzwK-3b]
          Length = 632

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + C +  C+++CP          + I P  C  CG C   CP  AI  D       + +I
Sbjct: 257 VGCSN--CLDICPTGAIIPAGEHVTIDPMICAGCGACAARCPSGAITYDAPSPDTTFRRI 314



 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           V T+ C LC    CV +CP     E  +   +   E  C+ CG+C   CP DAI  +
Sbjct: 479 VDTDACTLCL--SCVSLCPSGALLENPDKPQLRFQEDACLQCGLCANVCPEDAITYE 533


>gi|225571993|ref|ZP_03780857.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040526|gb|EEG50772.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM
           10507]
          Length = 368

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + CI CK   C ++C  D     +   AI+ D+C+ CG C   CP DAI P ++ 
Sbjct: 190 PHVNQKLCIGCKK--CAQICAHDAPEFKDLKAAINHDKCVGCGRCLGVCPKDAICPASDE 247

Query: 62  GLELWLKINSEYATQWPNITT 82
             ++   +N + A     +  
Sbjct: 248 SNDI---LNCKIAEYTKAVIE 265


>gi|167625352|ref|YP_001675646.1| nitrate reductase subunit beta [Shewanella halifaxensis HAW-EB4]
 gi|167355374|gb|ABZ77987.1| nitrate reductase, beta subunit [Shewanella halifaxensis HAW-EB4]
          Length = 519

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 175 MMYL-PRLCEHCLNPACAASCPSGAIYKRQDDGIVLIDQDKCRGWRMCVSACPYKKIYYN 233

Query: 59  TE 60
            +
Sbjct: 234 WK 235


>gi|160937728|ref|ZP_02085088.1| hypothetical protein CLOBOL_02621 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439373|gb|EDP17125.1| hypothetical protein CLOBOL_02621 [Clostridium bolteae ATCC
          BAA-613]
          Length = 56

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+++ C+ C    C   CPV    EG++   I  D CIDCG C   CP  AI
Sbjct: 1  MAYVISDACVSC--GSCAAECPVSAISEGDSQYVIDADTCIDCGTCAATCPTGAI 53


>gi|91778366|ref|YP_553574.1| iron-sulfur cluster-binding protein [Burkholderia xenovorans LB400]
 gi|91691026|gb|ABE34224.1| iron-sulfur cluster-binding protein [Burkholderia xenovorans LB400]
          Length = 251

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDFDRCIGCKYCAWACPYGARELDE 125


>gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
          Length = 596

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+    + +    I  D+CI CG C  +CP  AI 
Sbjct: 542 YIDPDKCKAC--GICAKNCPVNAISGKPKVPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 34.2 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYE 28
            YV+  + CI C    C+E CP    Y+
Sbjct: 570 PYVIDQDKCIKC--GTCIEKCPFGAIYK 595


>gi|289829884|ref|ZP_06547372.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
          Length = 185

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|239624920|ref|ZP_04667951.1| dihydroorotate dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521306|gb|EEQ61172.1| dihydroorotate dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 362

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  E C  C    C   CP       +    +  D+C  CG+CE  CP  AI
Sbjct: 306 PVIDREACTGC--GLCERNCPYFALEMRDKKPFVDNDKCFGCGLCESRCPAQAI 357


>gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402
           065]
          Length = 631

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSVCPVGAI 628


>gi|257063467|ref|YP_003143139.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791120|gb|ACV21790.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 192

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           M Y  +  C  C++  CV  CP     + E+       + CI CG C   CP      D 
Sbjct: 49  MPYHFSAGCNHCENPACVANCPTGACQKAEDGTVFRDEEVCIGCGSCANSCPYGHPMIDD 108

Query: 60  E 60
           E
Sbjct: 109 E 109


>gi|254475789|ref|ZP_05089175.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214030032|gb|EEB70867.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 649

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++VCP        + ++I P  C  CG C   CP  AI  D  P      +I
Sbjct: 276 TGC--TRCLDVCPTGAISPDGDHVSIDPMICAGCGSCASLCPSGAITYDAPPTDAQMRRI 333



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V ++ C LC    CV +CP            L    D C+ CG+C   CP +AI  +
Sbjct: 496 VASDKCTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPENAISYE 550


>gi|39998452|ref|NP_954403.1| sigma-54 dependent transcriptional regulator, Fis family
          [Geobacter sulfurreducens PCA]
 gi|39985399|gb|AAR36753.1| sigma-54 dependent transcriptional regulator, Fis family
          [Geobacter sulfurreducens PCA]
          Length = 763

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MTYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  ++T+   C  C    CV  CPV      + +  I  D CI CG C   CP  A    
Sbjct: 1  MEPIITDKEKCRKCYC--CVRSCPVKAIKVEKRYTEIIFDRCIGCGNCLSNCPQRAKMVA 58

Query: 59 TE 60
           +
Sbjct: 59 DK 60


>gi|119776748|ref|YP_929488.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
 gi|119769248|gb|ABM01819.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 580

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D     E  + I P  C   G C   CP  AI  D      L   +
Sbjct: 220 NGCN--RCLNFCPADAIQSVEKKIEIDPYLCHGAGSCTNACPTGAISYDLPNPQALHSFL 277

Query: 70  NS 71
           N 
Sbjct: 278 NK 279



 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+NC LC    CV +CP     +G  E  L      C+ CG+CE  CP   I
Sbjct: 445 VATDNCTLC--MSCVAICPTAALKDGGDEPKLLFTEQNCVQCGLCEAACPEKVI 496


>gi|254173765|ref|ZP_04880437.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
 gi|214032457|gb|EEB73287.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
          Length = 635

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V+ + C  CK    +  CP   +    N + I    C  CGVC   CP DAIK 
Sbjct: 574 VIEDRCTGCKACILLTGCPALVYDPETNKVRIDGLLCTGCGVCNQTCPFDAIKF 627


>gi|190151004|ref|YP_001969529.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249916|ref|ZP_07336118.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253741|ref|ZP_07339877.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248722|ref|ZP_07530735.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250968|ref|ZP_07532894.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307253340|ref|ZP_07535212.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255583|ref|ZP_07537388.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307260034|ref|ZP_07541746.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262162|ref|ZP_07543813.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264361|ref|ZP_07545949.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189916135|gb|ACE62387.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647397|gb|EFL77617.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650979|gb|EFL81133.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854649|gb|EFM86839.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856996|gb|EFM89126.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859204|gb|EFM91245.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861432|gb|EFM93421.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865870|gb|EFM97746.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868139|gb|EFM99964.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870313|gb|EFN02069.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 205

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++  +    ++ D CI C  C   CP DA + 
Sbjct: 60  AYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEDTCIGCRYCSMACPYDAPQY 116


>gi|78185937|ref|YP_373980.1| polysulfide reductase, subunit B, putative [Chlorobium luteolum DSM
           273]
 gi|78165839|gb|ABB22937.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Chlorobium luteolum DSM 273]
          Length = 243

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CP D  +  ++ +  I    CI C  C   CP   +  +    
Sbjct: 105 CNHCAEPSCVRACPTDSIFRRKDGIVAIDYHRCIGCRSCMLACPYGEVSFNWSDP 159


>gi|302386104|ref|YP_003821926.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium saccharolyticum WM1]
 gi|302196732|gb|ADL04303.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium saccharolyticum WM1]
          Length = 368

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  E CI C    C + C             I  + C+ CG C   CPVDA++ D + 
Sbjct: 190 PHVTEETCIGC--HACEKNCAHSAISFQNKKAGIDHNLCVGCGRCIGVCPVDAVETDFDE 247

Query: 62  GLELWLKINSEYATQWPNI 80
             ++   +N + A     +
Sbjct: 248 SNDI---LNCKIAEYTKAV 263


>gi|291546307|emb|CBL19415.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus sp. SR1/5]
          Length = 340

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+  CP            I  D+CI CG C+  CP DAI     P
Sbjct: 115 YEVSNMCRGCVAHPCLLTCPKGAISMVNGKSFIDQDKCIHCGRCKAVCPYDAIAHKERP 173



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-----------------YEGENFLAIHPDECIDCG 44
           +++  + CI C    C  VCP D                    + +   +I+ D+C+ CG
Sbjct: 145 SFIDQDKCIHC--GRCKAVCPYDAIAHKERPCERACGVKAIESDEQGRASINQDKCVSCG 202

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 203 MCMVSCPFGAI 213


>gi|213420835|ref|ZP_03353901.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 169

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152


>gi|167770016|ref|ZP_02442069.1| hypothetical protein ANACOL_01358 [Anaerotruncus colihominis DSM
          17241]
 gi|167667850|gb|EDS11980.1| hypothetical protein ANACOL_01358 [Anaerotruncus colihominis DSM
          17241]
          Length = 70

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ + C+ C    C + CPV    EG+    I P  CI+CG C  +CP +AIKP+
Sbjct: 15 MAYVIGDACVSC--GACKDTCPVGAISEGDGKYEIDPSACIECGACAADCPSEAIKPE 70


>gi|242399760|ref|YP_002995185.1| Indolepyruvate: ferredoxin oxidoreductase (IOR), subunit alpha
           [Thermococcus sibiricus MM 739]
 gi|242266154|gb|ACS90836.1| Indolepyruvate: ferredoxin oxidoreductase (IOR), subunit alpha
           [Thermococcus sibiricus MM 739]
          Length = 632

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V+ + C  CK    +  CP   F E    +++    C  CG+CE  CP D I  
Sbjct: 573 PVVIKDKCTGCKACALLTGCPALVFDEERGKISVDSLICTGCGLCEQLCPFDVIVY 628


>gi|116753345|ref|YP_842463.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116664796|gb|ABK13823.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 128

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            E C+ C    C+ +CP   F   +  +   P +CI CG C   CP  A++
Sbjct: 76  EEECVHC--GACIAICPTGTFRFDDWKVVTDPGKCIQCGACVTACPHRALQ 124


>gi|254171957|ref|ZP_04878633.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
 gi|214033853|gb|EEB74679.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
          Length = 648

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C  CK       CP   +   +    I P  C  CG C   CP DA +   E
Sbjct: 589 VNEDKCTGCKICINAYGCPAIYWDAEKKKAKIDPTMCWGCGGCAQVCPFDAFEKVRE 645


>gi|307945104|ref|ZP_07660440.1| iron-sulfur cluster-binding protein [Roseibium sp. TrichSKD4]
 gi|307770977|gb|EFO30202.1| iron-sulfur cluster-binding protein [Roseibium sp. TrichSKD4]
          Length = 249

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    CV VCP    Y+   +  + +    CI CG+C   CP  A + D
Sbjct: 82  SCLHCDTAPCVTVCPTGASYKRSEDGIVLVDESACIGCGLCAWACPYGARELD 134


>gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 596

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+    + +    I  D+CI CG C  +CP  AI 
Sbjct: 542 YIDPDKCKAC--GICAKNCPVNAISGKPKVPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 34.2 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYE 28
            YV+  + CI C    C+E CP    Y+
Sbjct: 570 PYVIDQDKCIKC--GTCIEKCPFGAIYK 595


>gi|301062518|ref|ZP_07203161.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300443375|gb|EFK07497.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 506

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V  E C+ C    CV  CPV+  +  +    I  D C  CG C   C   A+  D+ P  
Sbjct: 3  VDVEKCVGC--GFCVRDCPVEAVHLVKKKAVI-EDHCTQCGACLKVCEYHALSRDSLPAE 59

Query: 64 EL 65
          + 
Sbjct: 60 DA 61


>gi|251779851|ref|ZP_04822771.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084166|gb|EES50056.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 646

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   CPVDC     +    I  ++C  CG C   CPVDAI
Sbjct: 220 ITKKCIGC--GSCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269


>gi|83310341|ref|YP_420605.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82945182|dbj|BAE50046.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 217

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C +VCP     +  +  + I  D CI CG C   CP  A    ++P  
Sbjct: 58  CMHCDEPPCRDVCPTTATTKRADGMVMIDYDICIGCGYCIVACPYQARYKVSKPTF 113


>gi|188589939|ref|YP_001920992.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500220|gb|ACD53356.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 646

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   CPVDC     +    I  ++C  CG C   CPVDAI
Sbjct: 220 ITKKCIGC--GSCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269


>gi|31044101|dbj|BAA33533.3| ferredoxin [Streptomyces griseus]
          Length = 57

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 41/57 (71%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFY 57


>gi|87311529|ref|ZP_01093648.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Blastopirellula marina DSM 3645]
 gi|87285785|gb|EAQ77700.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Blastopirellula marina DSM 3645]
          Length = 1052

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 2   TYVVTEN--CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKP- 57
              VT+   C  C++  C +VCPV    +  E    +  + CI    C   CP    +  
Sbjct: 823 PVAVTQPVTCHHCENAPCEQVCPVAATVHSDEGLNDMIYNRCIGTRYCGNNCPYKVRRFN 882

Query: 58  --DTEPGLELWLKINSEYAT 75
             D       + + N + A 
Sbjct: 883 FLDYRASDYRFEESNRQLAE 902


>gi|189500774|ref|YP_001960244.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides BS1]
 gi|189496215|gb|ACE04763.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides BS1]
          Length = 258

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C +  CV  CP    ++      +A+    CI C  C   CP  +   +     E  
Sbjct: 119 CNHCDNPPCVRACPTRATFKRSWDGIVAMDYHRCIGCRFCMAACPYGSRSFNWRDPREAI 178

Query: 67  LKINSEYATQWPNITTK 83
            K +  Y T+   +  K
Sbjct: 179 EKRDQAYPTRERGVVEK 195


>gi|300854908|ref|YP_003779892.1| putative electron transport protein [Clostridium ljungdahlii DSM
           13528]
 gi|300435023|gb|ADK14790.1| predicted electron transport protein [Clostridium ljungdahlii DSM
           13528]
          Length = 193

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V   C  C+   C  VCPV    + +N + +  + CI C  C   CP  A+    +    
Sbjct: 57  VPIQCRQCEDAPCANVCPVRAISQLDNKIVVDTEACIGCKTCIMACPFGAMDLVPKYKDG 116

Query: 65  LWLKINSEYATQWPNITTKK-----------ESLPSAAKMDGVKQKYEKYFSPN 107
             +  N   +     +  K+           +     A +    +K  +   P 
Sbjct: 117 QLVTQNVLMSETDNGLVKKEVIVAHKCDLCIDQPDGPACVRACPEKALELIVPK 170


>gi|229580426|ref|YP_002838826.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|228011142|gb|ACP46904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|323475866|gb|ADX86472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
          Length = 294

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  C EVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 109 YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 168

Query: 61  PGLEL 65
            G+  
Sbjct: 169 EGVTK 173


>gi|254500510|ref|ZP_05112661.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222436581|gb|EEE43260.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 245

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+  
Sbjct: 78  SCLHCDDAPCVTVCPTGASYKRREDGIVLVNEDACIGCGLCAWACPYGARELDQAEGVMK 137


>gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
 gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
          Length = 597

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +T + C  C    CV+VCP      E +   AI+ ++CI C  C   C   AI
Sbjct: 541 TYEITVDKCKGC--GLCVKVCPAGAITGERKQPHAINREKCIKCNSCFERCRFGAI 594



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQW 77
            + CP     +      I  D+C  CG+C   CP  AI  + +        IN E   + 
Sbjct: 528 EKKCPAGAC-KALITYEITVDKCKGCGLCVKVCPAGAITGERKQPH----AINREKCIKC 582

Query: 78  PNITTK 83
            +   +
Sbjct: 583 NSCFER 588


>gi|164686864|ref|ZP_02210892.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM
          16795]
 gi|164604254|gb|EDQ97719.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM
          16795]
          Length = 273

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  E CI C    CV+ CPV      +N   I+ + C  CG C   CPV+A+  D 
Sbjct: 1  MFSVNKEKCIGCS--QCVKDCPVSTISLVDNKAEINNERCFKCGHCIAICPVEAVSTDD 57


>gi|124027268|ref|YP_001012588.1| Fe-S cluster-containing hydrogenase component 1 [Hyperthermus
           butylicus DSM 5456]
 gi|123977962|gb|ABM80243.1| Fe-S cluster-containing hydrogenase component 1 [Hyperthermus
           butylicus DSM 5456]
          Length = 215

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
            Y +   C+ C++  C  VCP    Y+ +  + +    +CI C  C   CP  A
Sbjct: 63  PYFI--QCMHCENPPCAAVCPTGATYKTKEGVVMLDHSKCIGCRACVIACPYAA 114


>gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 594

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           V+ E C  C    C + CPVD           I    CI CG+C   C  DAI
Sbjct: 541 VIEEACTGC--HLCYKNCPVDAITGETKKVHHIDQKICIKCGMCYEVCKFDAI 591


>gi|220931143|ref|YP_002508051.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
 gi|219992453|gb|ACL69056.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
          Length = 877

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPGL 63
          + + C  C    CV  CPV           +  D CI CG C   C   A K  D +   
Sbjct: 8  IKDRCHECY--ACVRNCPVKAVRVKNRQAEVISDRCIHCGNCVLVCSQGAKKVRDFKEIA 65

Query: 64 ELWLKINSE 72
          + +L+ N +
Sbjct: 66 KQFLQDNDK 74



 Score = 33.8 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF 32
          V+++ CI C   +CV VC        +  
Sbjct: 36 VISDRCIHC--GNCVLVCSQGAKKVRDFK 62


>gi|167622346|ref|YP_001672640.1| dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
 gi|167352368|gb|ABZ74981.1| Dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
          Length = 207

 Score = 53.8 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    ++   +  + +  D CI C  CE  CP  A + + 
Sbjct: 61  AYYLSISCNHCAEPACTKACPTGAMHKRSQDGLVVVDTDVCIGCRYCEMACPYGAPQYNP 120

Query: 60  EPGLE 64
           E    
Sbjct: 121 EKKHM 125


>gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
 gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
          Length = 629

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  +    C  C+   CV+ CP      E +    I    CI CG C   C   A+
Sbjct: 573 MPTINAARCKGCRL--CVKACPAGAITGEKKQPHVIDETLCIKCGACATACKFGAV 626


>gi|226327802|ref|ZP_03803320.1| hypothetical protein PROPEN_01679 [Proteus penneri ATCC 35198]
 gi|225203506|gb|EEG85860.1| hypothetical protein PROPEN_01679 [Proteus penneri ATCC 35198]
          Length = 247

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C    CV VCPV   ++ ++  + +  + C+ C  C   CP DA
Sbjct: 100 CNHCDEPPCVPVCPVQATFQRKDGIVVVDNERCVGCAYCVQACPYDA 146



 Score = 33.8 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           V  E C+ C +  CV+ CP D  +   +             +
Sbjct: 127 VDNERCVGCAY--CVQACPYDARFINHSTQTADKCTFCAHRL 166


>gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
 gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
          Length = 599

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C    C + CPV   +   G+    I  ++CI CG C   C  + I
Sbjct: 543 YVIDEEKCRKC--GLCAKQCPVGAIHGELGKVPYVIDQEKCIKCGQCIKACHFNVI 596



 Score = 33.8 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CP     +      I  ++C  CG+C  +CPV AI  +
Sbjct: 530 KKCPAGVC-KELLQYVIDEEKCRKCGLCAKQCPVGAIHGE 568


>gi|124266363|ref|YP_001020367.1| formate dehydrogenase iron-sulfur subunit [Methylibium
           petroleiphilum PM1]
 gi|124259138|gb|ABM94132.1| formate dehydrogenase iron-sulfur subunit [Methylibium
           petroleiphilum PM1]
          Length = 210

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  +  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSYACPFGA 101


>gi|78221282|ref|YP_383029.1| sigma-54 dependent trancsriptional regulator [Geobacter
          metallireducens GS-15]
 gi|78192537|gb|ABB30304.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          metallireducens GS-15]
          Length = 756

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          V E C  C    CV  CPV      +++  I  D CI CG C   CP  A     +
Sbjct: 7  VKEKCRKCYC--CVRSCPVKAIKVAKSYTEIIVDRCIGCGNCLSNCPQQAKMVADK 60


>gi|150388818|ref|YP_001318867.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149948680|gb|ABR47208.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 226

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVD--CFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           ++  C  C+   CV  CPV+    Y+ +N + +   + CI C  CE  CP   I  + E 
Sbjct: 54  ISTLCNHCEDAPCVTACPVNPKAMYKQDNGITMHDEETCIGCRACETACPYGVIYYNDEE 113

Query: 62  GLELW 66
               W
Sbjct: 114 PFGKW 118


>gi|323702855|ref|ZP_08114514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323532243|gb|EGB22123.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 571

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-IKPD 58
          M  + T ++C  C    CV  CPV      +    I  + C+ CG C   C + A I  D
Sbjct: 1  MALISTNQDCRKCY--ACVRACPVKTISISDGIPEIIEEGCLGCGQCVLACSIGAKIVHD 58

Query: 59 TEPGLELWL 67
            P ++ W+
Sbjct: 59 DTPKVQRWI 67


>gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 596

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  E C  C    C + CP +    + +    I  D+CI CG C  +CP DAI 
Sbjct: 543 IDPEKCKGC--GICAKNCPTNAISGKVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594


>gi|167567033|ref|ZP_02359949.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia oklahomensis EO147]
          Length = 252

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|163740485|ref|ZP_02147879.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161386343|gb|EDQ10718.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 264

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+  
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEGVMK 146


>gi|149908584|ref|ZP_01897246.1| tetrathionate reductase, subunit B [Moritella sp. PE36]
 gi|149808418|gb|EDM68355.1| tetrathionate reductase, subunit B [Moritella sp. PE36]
          Length = 257

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  CV+VCPV   ++ E+ +  +  + C+ C  C   CP DA   + E
Sbjct: 111 CNHCENPPCVKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDARFINEE 163


>gi|269216722|ref|ZP_06160576.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Slackia
           exigua ATCC 700122]
 gi|269129867|gb|EEZ60950.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Slackia
           exigua ATCC 700122]
          Length = 177

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           VV   C+ C+   C +VCP    Y  ++ +  + P+ CI C  C   CP 
Sbjct: 53  VVPSQCMHCEDAPCQKVCPTHATYTTDDGVVLVDPERCIGCKYCMAACPY 102


>gi|242239951|ref|YP_002988132.1| hydrogenase 2 protein HybA [Dickeya dadantii Ech703]
 gi|242132008|gb|ACS86310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 338

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +      C  C  C   CP +  K D E  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASICTGCRYCMVACPFNVPKYDYENP 172

Query: 63  LEL 65
           L  
Sbjct: 173 LGK 175


>gi|222834638|gb|EEE73101.1| predicted protein [Populus trichocarpa]
          Length = 187

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++  + +  +  + C+ CG C   CP DA   + E
Sbjct: 62  CNHCDNPPCVPVCPVQATFQRSDGIVLVDNERCVGCGYCVQACPYDARFINHE 114


>gi|23013477|ref|ZP_00053367.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 217

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C +VCP     +  +  + I  D CI CG C   CP  A    ++P  
Sbjct: 58  CMHCDEPPCRDVCPTTATTKRADGMVMIDYDICIGCGYCIVACPYQARYKVSKPTF 113


>gi|148265410|ref|YP_001232116.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146398910|gb|ABQ27543.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 281

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
            E C+ C    C  VCPV  F + +    +     CI C  C   CP    K + 
Sbjct: 81  KEMCMHCNEPACASVCPVGAFKKTKEGPVVYDAKRCIGCRFCMVACPFGVPKYEW 135


>gi|291614173|ref|YP_003524330.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584285|gb|ADE11943.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 243

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D +  +  
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCTWACPYGAREIDEKQKVMK 131


>gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 489

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VV   C+ C  T C  VCPV C   + +    I  + CI CG C   C   AI
Sbjct: 435 FVVAAKCVGC--TACARVCPVSCISGKAKEVHLIDQNSCIKCGACIERCKFGAI 486


>gi|204926687|ref|ZP_03217889.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323352|gb|EDZ08547.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 208

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY  +  C  C    CV  CP    ++   +  + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYFSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDT 118


>gi|187251160|ref|YP_001875642.1| hydrogenase large subunit domain-containing protein [Elusimicrobium
           minutum Pei191]
 gi|186971320|gb|ACC98305.1| Hydrogenase large subunit domain protein [Elusimicrobium minutum
           Pei191]
          Length = 482

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C +VCP +      E    I   +C++CG+C   CP  AI     P
Sbjct: 91  YEVTAACRGCIAHRCEQVCPKNAISFDHEQKAHIDKTKCVECGLCAKVCPFSAILSYKRP 150

Query: 62  GLELWLKINS 71
             +    +N+
Sbjct: 151 CEKACKVVNA 160



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 20/73 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCP-----------------VDCFYEGENF-LAIHPDECIDC 43
            ++    C+ C    C +VCP                 V+           I   +C+ C
Sbjct: 122 AHIDKTKCVEC--GLCAKVCPFSAILSYKRPCEKACKVVNAISMNSTKEAKIDDKKCVSC 179

Query: 44  GVCEPECPVDAIK 56
           G C  +CP  AI 
Sbjct: 180 GACINQCPFGAIM 192


>gi|126736831|ref|ZP_01752566.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126721416|gb|EBA18119.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 254

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEGVMK 140


>gi|255322980|ref|ZP_05364116.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
 gi|255299842|gb|EET79123.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
          Length = 186

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           T  C  C    C +VCPVDCFY   + +     ++CI CG C   CP  A
Sbjct: 53  TIACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGA 102


>gi|301061526|ref|ZP_07202288.1| anaerobic dimethyl sulfoxide reductase chain B family protein
           [delta proteobacterium NaphS2]
 gi|300444334|gb|EFK08337.1| anaerobic dimethyl sulfoxide reductase chain B family protein
           [delta proteobacterium NaphS2]
          Length = 149

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C EVCP +  Y+ ++ + +  PD+CI CG C  ECP  AI  D E
Sbjct: 59  CRHCDDPPCAEVCPEEIIYKRDDGIVVLDPDKCIGCGSCIDECPYGAIVFDHE 111


>gi|291279714|ref|YP_003496549.1| formate dehydrogenase subunit beta [Deferribacter desulfuricans
           SSM1]
 gi|290754416|dbj|BAI80793.1| formate dehydrogenase, beta subunit [Deferribacter desulfuricans
           SSM1]
          Length = 195

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVD  Y+ E+ +  ++ D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCIAVCPVDALYQREDGIVLVNKDVCIGCGYCFFACPFGA 101


>gi|254262256|emb|CAZ90582.1| Anaerobic dimethyl sulfoxide reductase chain B dmsB [Enterobacter
           helveticus]
          Length = 205

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCADPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|239628874|ref|ZP_04671905.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridiales bacterium 1_7_47_FAA]
 gi|239519020|gb|EEQ58886.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridiales bacterium 1_7_47FAA]
          Length = 55

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++C+ C    C   CPV    EG+    I  D CIDCG C   CP  AI
Sbjct: 1  MAYVINDSCVSC--GSCAGECPVGAISEGDGKYVIDADTCIDCGTCAATCPTGAI 53


>gi|149191659|ref|ZP_01869902.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio shilonii
           AK1]
 gi|148834500|gb|EDL51494.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio shilonii
           AK1]
          Length = 204

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  +  C  C    C +VCP    ++ E+  + +    CI C  C   CP  A +   E
Sbjct: 59  AYYTSIACNHCDEPACAKVCPSGAMHKREDGFVVVDEKVCIGCKHCANACPYGAPQYSKE 118


>gi|114320829|ref|YP_742512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227223|gb|ABI57022.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 230

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+ E    + I  D+C+ C  C   CP  A + D
Sbjct: 71  SCMHCEDPVCVTVCPTGASYKREEDGIVLIDQDKCMGCNYCAWACPYGARELD 123


>gi|329936419|ref|ZP_08286184.1| ferredoxin iron-sulfur binding domain protein [Streptomyces
           griseoaurantiacus M045]
 gi|329304215|gb|EGG48096.1| ferredoxin iron-sulfur binding domain protein [Streptomyces
           griseoaurantiacus M045]
          Length = 337

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I+   + 
Sbjct: 148 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQEDVCNGCGYCVPACPYGVIEQRPDD 204


>gi|262275677|ref|ZP_06053486.1| tetrathionate reductase subunit B [Grimontia hollisae CIP 101886]
 gi|262219485|gb|EEY70801.1| tetrathionate reductase subunit B [Grimontia hollisae CIP 101886]
          Length = 255

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   Y+ E+ +  +    C+ C  C   CP DA   + E
Sbjct: 109 CNHCDNPPCVAVCPVQATYQREDGIVMVDNSRCVACAYCVQACPYDARFINEE 161


>gi|167821535|ref|ZP_02453215.1| iron-sulfur cluster protein [Burkholderia pseudomallei 91]
          Length = 246

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 83  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 136


>gi|153815520|ref|ZP_01968188.1| hypothetical protein RUMTOR_01755 [Ruminococcus torques ATCC 27756]
 gi|317502217|ref|ZP_07960391.1| nitrite and sulphite reductase 4Fe-4S region [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331088784|ref|ZP_08337694.1| hypothetical protein HMPREF1025_01277 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847162|gb|EDK24080.1| hypothetical protein RUMTOR_01755 [Ruminococcus torques ATCC 27756]
 gi|316896426|gb|EFV18523.1| nitrite and sulphite reductase 4Fe-4S region [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330407307|gb|EGG86810.1| hypothetical protein HMPREF1025_01277 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 864

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
            +V  E C  C+     + CP+      +  + I  + C  CG C  +CP 
Sbjct: 714 PWVDLEKCRGCRICQVEKNCPIHAAKMVDGKIVIDENVCNHCGRCISKCPF 764


>gi|85859306|ref|YP_461508.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85722397|gb|ABC77340.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 346

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E C  C    CVEVCP      G++ L     + CI C  C   CP  A+K   E    
Sbjct: 196 PEKCTKC--GTCVEVCPTGAAQFGDDGLPFYDHEVCIGCAQCIGFCPALALKIHWETDAA 253

Query: 65  LWLKINSE-YATQWPNITTK 83
           ++ +   E  A  W  I  +
Sbjct: 254 VFQEKLVETAAAVWRQIEGR 273


>gi|74316589|ref|YP_314329.1| DMSO reductase subunit B [Thiobacillus denitrificans ATCC 25259]
 gi|74056084|gb|AAZ96524.1| DMSO reductase chain B [Thiobacillus denitrificans ATCC 25259]
          Length = 231

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+  DCV VCP    Y+   +  + I  D+C+ C  C   CP  A + D   G   
Sbjct: 71  SCMHCEDADCVTVCPTGASYKRAEDGIVLIDQDKCMGCNYCSWACPYGARELDRSSGTMK 130


>gi|167574102|ref|ZP_02366976.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia oklahomensis C6786]
          Length = 248

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|295106485|emb|CBL04028.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 190

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           Y +   C  C + +CV VCP    Y  E+ +  +   +CI C  C   CP      D 
Sbjct: 53  YYLPVACQHCDNPECVSVCPTGASYRREDGVVLVDHSKCIGCQYCVMACPYGVRAYDE 110


>gi|323476735|gb|ADX81973.1| thiamine pyrophosphate domain, TPP-binding protein [Sulfolobus
           islandicus HVE10/4]
          Length = 612

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP     + +    I    CI CG C P CP  AI        
Sbjct: 546 VDLEKCTGCSICYDYFTCPAIIPRKDK-KAEIDNYTCIGCGACIPVCPFKAISL-KGDKP 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|317489629|ref|ZP_07948133.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325830197|ref|ZP_08163654.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|316911223|gb|EFV32828.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325487664|gb|EGC90102.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 209

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    CV  CP     + E    +    + CI C  C+  CP DA   D E
Sbjct: 62  YFVSMACNHCVDPACVANCPTGAMQKDEETGIVWTDHEVCIGCKTCQTVCPYDAPTYDDE 121


>gi|315082639|gb|EFT54615.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL027PA2]
          Length = 213

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++VCP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|260773761|ref|ZP_05882676.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio
           metschnikovii CIP 69.14]
 gi|260610722|gb|EEX35926.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio
           metschnikovii CIP 69.14]
          Length = 204

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++  C  C    C +VCP    ++ E+   I     CI C +C   CP  A +   E
Sbjct: 59  SYYLSIACNHCDEPACAKVCPSGAMHKREDGFVIVDEAVCIGCKLCAMSCPYGAPQYSEE 118


>gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 617

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  E C  C    C   CP      E +    I  ++CI CG C  +C  +AI 
Sbjct: 562 YVIDQEKCTGC--GACARACPAGAIAGEKKQPHVIDVEKCIKCGSCIQKCKFEAIY 615



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           + CP            I  ++C  CG C   CP  AI  + +    + ++
Sbjct: 549 KRCPAGVCS-ALLVYVIDQEKCTGCGACARACPAGAIAGEKKQPHVIDVE 597


>gi|50842000|ref|YP_055227.1| anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           acnes KPA171202]
 gi|289424433|ref|ZP_06426216.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           SK187]
 gi|289428460|ref|ZP_06430146.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes J165]
 gi|295130080|ref|YP_003580743.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           SK137]
 gi|50839602|gb|AAT82269.1| anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           acnes KPA171202]
 gi|289155130|gb|EFD03812.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           SK187]
 gi|289158432|gb|EFD06649.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes J165]
 gi|291377031|gb|ADE00886.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           SK137]
 gi|313772641|gb|EFS38607.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL074PA1]
 gi|313792894|gb|EFS40961.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL110PA1]
 gi|313802652|gb|EFS43874.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL110PA2]
 gi|313806667|gb|EFS45174.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL087PA2]
 gi|313810863|gb|EFS48577.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL083PA1]
 gi|313814626|gb|EFS52340.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL025PA1]
 gi|313817210|gb|EFS54924.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL046PA2]
 gi|313821728|gb|EFS59442.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL036PA1]
 gi|313824381|gb|EFS62095.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL036PA2]
 gi|313826739|gb|EFS64453.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL063PA1]
 gi|313831983|gb|EFS69697.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL007PA1]
 gi|313834477|gb|EFS72191.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL056PA1]
 gi|313840290|gb|EFS78004.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL086PA1]
 gi|314926833|gb|EFS90664.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL036PA3]
 gi|314961261|gb|EFT05362.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL002PA2]
 gi|314964311|gb|EFT08411.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL082PA1]
 gi|314974479|gb|EFT18574.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL053PA1]
 gi|314977330|gb|EFT21425.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL045PA1]
 gi|314980513|gb|EFT24607.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL072PA2]
 gi|314985570|gb|EFT29662.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL005PA1]
 gi|314987527|gb|EFT31618.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL005PA2]
 gi|314989008|gb|EFT33099.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL005PA3]
 gi|315078673|gb|EFT50704.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL053PA2]
 gi|315081867|gb|EFT53843.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL078PA1]
 gi|315086349|gb|EFT58325.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL002PA3]
 gi|315087598|gb|EFT59574.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL072PA1]
 gi|315097548|gb|EFT69524.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL038PA1]
 gi|315106566|gb|EFT78542.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL030PA1]
 gi|327331599|gb|EGE73338.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL096PA2]
 gi|327333581|gb|EGE75301.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL096PA3]
 gi|327335107|gb|EGE76818.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL097PA1]
 gi|327445391|gb|EGE92045.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL013PA2]
 gi|327447006|gb|EGE93660.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL043PA1]
 gi|327449958|gb|EGE96612.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL043PA2]
 gi|327456851|gb|EGF03506.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL092PA1]
 gi|328758637|gb|EGF72253.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL020PA1]
 gi|328761729|gb|EGF75244.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL099PA1]
 gi|332674921|gb|AEE71737.1| anaerobic dimethyl sulfoxide reductase chain B [Propionibacterium
           acnes 266]
          Length = 213

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++VCP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|15899512|ref|NP_344117.1| oxydoreductase, putative [Sulfolobus solfataricus P2]
 gi|13816140|gb|AAK42907.1| Oxydoreductase, putative [Sulfolobus solfataricus P2]
          Length = 293

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  C EVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 108 YNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 167

Query: 61  PGLEL 65
            G+  
Sbjct: 168 EGVTK 172


>gi|170290376|ref|YP_001737192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174456|gb|ACB07509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 191

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPV 52
           V   C+ C    CV+ CP    +  +    I  P +CI C  C   CP 
Sbjct: 61  VPMRCMHCDPAPCVKACPTGSMHRTDEGFVISDPSKCIGCRTCLLACPF 109


>gi|319779238|ref|YP_004130151.1| Ferredoxin [Taylorella equigenitalis MCE9]
 gi|317109262|gb|ADU92008.1| Ferredoxin [Taylorella equigenitalis MCE9]
          Length = 62

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 47  EPECPVDAIK--PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
            PECP +AI    D     + +++IN+E    +  I+   + LP A + +G   K E   
Sbjct: 1   MPECPANAIFAEEDLPKDQQQFIQINAELTPLFEPISRSIDPLPDADEWNGKPNKLEYLI 60

Query: 105 SP 106
            P
Sbjct: 61  KP 62


>gi|291561240|emb|CBL40039.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 490

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VVT+NC  C    C   C       G +   I P  C +CG C   CP +AI
Sbjct: 94  FVVTDNCQKCMGKACQNACNFGAISIGRDRAHIDPSVCKECGRCAQSCPYNAI 146



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 20/70 (28%), Gaps = 16/70 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN--FLAIHPDECIDCGV 45
            ++    C  C                  C   CPVD            I   +CI CG 
Sbjct: 124 AHIDPSVCKECGRCAQSCPYNAIAELIRPCRRACPVDAITMDPETGICQIDEKKCIQCGA 183

Query: 46  CEPECPVDAI 55
           C   CP  AI
Sbjct: 184 CVRSCPFGAI 193


>gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 635

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           I+PD+CI CG+C   C   AI
Sbjct: 579 TYTINPELCIGC--HLCFKHCPADAILGDVRKPHVINPDKCIKCGMCMARCKFKAI 632


>gi|266619566|ref|ZP_06112501.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288868851|gb|EFD01150.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 56

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C   CPV    EGE    I  D CI CG C   CPV AI  +
Sbjct: 1  MAYVISDACVSC--GTCEGECPVSAISEGEGQYVIDADTCISCGTCAGACPVGAISEE 56


>gi|229829818|ref|ZP_04455887.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM
           14600]
 gi|229791807|gb|EEP27921.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM
           14600]
          Length = 219

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C    C  VCP +C         I  + C+ CG C   CPV A+
Sbjct: 166 YFITDACIGC--GSCAAVCPQNCIVTDSIPYIIEQEHCLHCGNCLTACPVGAV 216


>gi|223040716|ref|ZP_03610984.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
 gi|222878000|gb|EEF13113.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
          Length = 186

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           T  C  C    C +VCPVDCFY   + +     ++CI CG C   CP  A
Sbjct: 53  TIACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGA 102


>gi|78044791|ref|YP_360645.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996906|gb|ABB15805.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 187

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   C   CP    Y+ + F+ I+   CI C VC   CP  AI    E   E
Sbjct: 64  CRQCEDAPCAHACPTGAIYQEDKFVRINEGNCIGCKVCTMVCPFGAIIIAQEEKDE 119


>gi|50120165|ref|YP_049332.1| hydrogenase 2 protein HybA [Pectobacterium atrosepticum SCRI1043]
 gi|49610691|emb|CAG74136.1| hydrogenase-2 operon protein [Pectobacterium atrosepticum SCRI1043]
          Length = 336

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +  +   +   PD C  C  C   CP +  K D +  
Sbjct: 114 IKKQCMHCVDPNCVSVCPVQALRKDAHTGIVHYDPDVCTGCRYCIVGCPFNVPKYDYDDP 173

Query: 63  LEL 65
              
Sbjct: 174 FGK 176


>gi|37680406|ref|NP_935015.1| tetrathionate reductase, subunit B [Vibrio vulnificus YJ016]
 gi|37199153|dbj|BAC94986.1| tetrathionate reductase, subunit B [Vibrio vulnificus YJ016]
          Length = 255

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   Y+ E+ +  +    C+ C  C   CP DA   + E
Sbjct: 109 CNHCDNPPCVAVCPVQATYQREDGIVMVDNSRCVACAYCVQACPYDARFINQE 161


>gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas
          paucivorans DSM 12260]
 gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas
          paucivorans DSM 12260]
          Length = 301

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C    CVE CP        + + +    C+ CGVC   CP  A+
Sbjct: 52 KDRCIGC--GRCVESCPHKALSFVNDGVHVDLSRCVGCGVCASVCPSLAL 99


>gi|218779702|ref|YP_002431020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761086|gb|ACL03552.1| Periplasmic formate dehydrogenase FdhABC, beta subunit (iron-sulfur
           subunit) [Desulfatibacillum alkenivorans AK-01]
          Length = 263

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    CV  CPV    +            CI C  C+  CP +A + +       
Sbjct: 74  CNHCIEPACVTACPVGALTKTAEGPVHYDESRCIGCRYCQVVCPFNAPRFEWNDPNPE 131


>gi|20428812|emb|CAD21687.1| phenylacetyl CoA [Azoarcus evansii]
          Length = 238

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C    C EVCP     +  + L  I  D CI C  C   CP +A     E  
Sbjct: 76  FVPVACMHCDEPPCEEVCPTKATTKRPDGLVAIDYDTCIGCANCVMACPYEARSIVHEAK 135

Query: 63  L 63
            
Sbjct: 136 F 136


>gi|92114039|ref|YP_573967.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91797129|gb|ABE59268.1| formate dehydrogenase beta subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 216

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+ ++ +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCDDAPCMAVCPTDCFYKTDDGIVLHDKDICIGCGYCLYACPFGA 101


>gi|323699243|ref|ZP_08111155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323459175|gb|EGB15040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 257

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV VCP    ++  + +  +    CI C  C   CP  +   +    
Sbjct: 118 CNHCENPPCVRVCPTKATFQRPDGIVAMDYHRCIGCRYCMAGCPYGSRSFNWGEP 172


>gi|257790238|ref|YP_003180844.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317489699|ref|ZP_07948203.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830251|ref|ZP_08163708.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257474135|gb|ACV54455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911293|gb|EFV32898.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487718|gb|EGC90156.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 210

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  +C  C++ +CV+VCP +  +  E+  + I  ++CI C  C   CP      + E 
Sbjct: 58  YFLPISCQHCENPECVKVCPTEASHVAEDGSIQIDKEKCIGCQFCVMACPYGVRYLNEEE 117

Query: 62  G 62
            
Sbjct: 118 K 118


>gi|289807490|ref|ZP_06538119.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 168

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C +  CV VCPV   ++ E+  + +    C+ C  C   CP DA   + E
Sbjct: 24 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 76


>gi|217971445|ref|YP_002356196.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217496580|gb|ACK44773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 553

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + I P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E+A   P I
Sbjct: 251 NKVVSRFREHAQTAPVI 267



 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|83590297|ref|YP_430306.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573211|gb|ABC19763.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 1067

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C    CV VCP       ++   I P  C  CG C   CP  AI
Sbjct: 871 VEGACAACL--TCVRVCPHGAPAIKDHRSHIDPLLCQGCGACVAACPARAI 919


>gi|20807368|ref|NP_622539.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|254478276|ref|ZP_05091656.1| Putative Fe-S cluster family protein [Carboxydibrachium pacificum
          DSM 12653]
 gi|20515886|gb|AAM24143.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|214035741|gb|EEB76435.1| Putative Fe-S cluster family protein [Carboxydibrachium pacificum
          DSM 12653]
          Length = 431

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 1  MTYV-----VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          MTY        + C  C  T+C++ CP +     E    I  + CIDCG C   CP  A
Sbjct: 1  MTYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVREGKARIINERCIDCGECIRVCPYHA 57


>gi|194332893|ref|YP_002014753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194310711|gb|ACF45106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 258

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C + CP +  ++  + +  +    CI C  C   CP  +   + +       
Sbjct: 120 CNHCAEPPCTKACPTEATFKRWDGIVAMDYHRCIGCRFCMAACPYGSRSFNWQDPRPAI- 178

Query: 68  KINSEYATQWPN 79
              SEY+  +P 
Sbjct: 179 ---SEYSDTYPT 187


>gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 596

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  + C  C    C + CP +    + +    I  D+CI CG C  +CP DAI 
Sbjct: 543 IDPDKCKGC--GICAKNCPTNAISGKVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594


>gi|296449690|ref|ZP_06891460.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296877993|ref|ZP_06902012.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
 gi|296261414|gb|EFH08239.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296431061|gb|EFH16889.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
          Length = 509

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VT+ C  C    C E C             I+ + C  CG+C+  C  DAI
Sbjct: 118 FTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAI 170



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 18/104 (17%)

Query: 1   MTYVVTENCILCKHT--------------DCVEVCPVDC--FYEGENFLAIHPDECIDCG 44
           M Y+  E C  C                  C  VCP +   F        IH ++C++CG
Sbjct: 147 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEEKCLNCG 206

Query: 45  VCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
            C   CP  AI   +   P     ++    YA   P IT + E+
Sbjct: 207 ACMSACPFGAISDKSLIAPVARKLVQKEKMYAVVAPAITGQVEA 250


>gi|257065446|ref|YP_003145118.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793099|gb|ACV23769.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C +  C  VCP    Y  E   + I  D+CI C +C   CP +A   +    
Sbjct: 64  ACQHCTNAACKRVCPTGATYRDEMGRIEIDYDKCIGCRMCMAACPFNARTFNWNEP 119


>gi|21675050|ref|NP_663115.1| polysulfide reductase, subunit B, putative [Chlorobium tepidum TLS]
 gi|21648287|gb|AAM73457.1| polysulfide reductase, subunit B, putative [Chlorobium tepidum TLS]
          Length = 258

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C + CP +  ++  + +  I    CI C  C   CP  +   +         
Sbjct: 120 CNHCTEPPCTKACPTEATFKRWDGIVSIDYHRCIGCRFCMAACPYGSRSFNWLDPRPHIK 179

Query: 68  KI 69
           ++
Sbjct: 180 EL 181


>gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
 gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
          Length = 630

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ + C  C  T C   CP +      +N   I   +CI CGVC   C   AI
Sbjct: 577 IIADKCKGC--TLCARNCPANAITGTVKNPHVIDTTKCIKCGVCMNNCKFGAI 627


>gi|167747433|ref|ZP_02419560.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662]
 gi|317471162|ref|ZP_07930533.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
          3_2_56FAA]
 gi|167652795|gb|EDR96924.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662]
 gi|316901377|gb|EFV23320.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
          3_2_56FAA]
          Length = 56

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ CI C    C   CP     EG+    I  D C+DCG C   CP  AI  +
Sbjct: 1  MAYVISDACISC--GACEGTCPAGAISEGDGQYVIDADTCLDCGACADGCPTGAISQE 56


>gi|296132292|ref|YP_003639539.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296030870|gb|ADG81638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 261

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C+ VC        +N  + I  D CI C  C   CP  AI  D E
Sbjct: 73  CMHCTEASCMAVCAAGAISRADNGQVVIDRDTCIGCKNCVVACPFGAIGFDEE 125


>gi|227831490|ref|YP_002833270.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|227457938|gb|ACP36625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
          Length = 280

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  C EVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 95  YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 154

Query: 61  PGLEL 65
            G+  
Sbjct: 155 EGVTK 159


>gi|162456775|ref|YP_001619142.1| putative anaerobic reductase component [Sorangium cellulosum 'So ce
           56']
 gi|161167357|emb|CAN98662.1| putative anaerobic reductase component [Sorangium cellulosum 'So ce
           56']
          Length = 580

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT  C  C    C+  CPV  + +      +    D+CI C  C   CP DA K + E
Sbjct: 127 VTTACHHCLDPACMSGCPVKAYEKDPITGIVKHLDDQCIGCQYCILMCPYDAPKFNAE 184


>gi|56478725|ref|YP_160314.1| ethylbenzene dehydrogenase, beta subunit [Aromatoleum aromaticum
           EbN1]
 gi|56314768|emb|CAI09413.1| Ethylbenzene dehydrogenase, beta subunit [Aromatoleum aromaticum
           EbN1]
          Length = 352

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+ E    + +  + C     C   CP  AI  
Sbjct: 151 CNHCTNPACLAACPTGAIYKREQDGIVLVDQERCKGHRHCVEACPYKAIYF 201


>gi|296273536|ref|YP_003656167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097710|gb|ADG93660.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 268

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           C  C++  CV VCP    ++ E+  + +  + C  CG C   CP D
Sbjct: 107 CNHCENPACVPVCPTGATFKREDGIVVVDNEICWGCGYCISACPYD 152


>gi|126698470|ref|YP_001087367.1| iron-dependent hydrogenase [Clostridium difficile 630]
 gi|260682591|ref|YP_003213876.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260686191|ref|YP_003217324.1| iron-dependent hydrogenase [Clostridium difficile R20291]
 gi|260208754|emb|CBA61609.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260212207|emb|CBE02898.1| iron-dependent hydrogenase [Clostridium difficile R20291]
          Length = 509

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VT+ C  C    C E C             I+ + C  CG+C+  C  DAI
Sbjct: 118 FTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAI 170



 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 18/104 (17%)

Query: 1   MTYVVTENCILCKHT--------------DCVEVCPVDC--FYEGENFLAIHPDECIDCG 44
           M Y+  E C  C                  C  VCP +   F        IH D+C++CG
Sbjct: 147 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCG 206

Query: 45  VCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
            C   CP  AI   +   P     ++    YA   P IT + E+
Sbjct: 207 ACMSACPFGAISDKSLIAPVARKLVQKEKMYAVVAPAITGQVEA 250


>gi|83950408|ref|ZP_00959141.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83838307|gb|EAP77603.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 672

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 3   YVVTEN--C-------ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           YV TE   C         C  T C+++CP        + + I P  C  CG C   CP  
Sbjct: 284 YVRTEPLLCAHSRAEQTGC--TRCLDLCPTGAITPDGDHVTIDPMVCAGCGACSAACPSG 341

Query: 54  AIKPDTEPGL 63
           AI  D  P  
Sbjct: 342 AISYDAPPVD 351



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T+ C LC    CV +CP            L    D C+ CG+C   CP DAI  +
Sbjct: 520 VDTDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANICPEDAITYE 574


>gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile 630]
 gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-66c26]
 gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile CIP 107932]
 gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-63q42]
 gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile ATCC 43255]
 gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-76w55]
 gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-97b34]
 gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-37x79]
 gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-23m63]
 gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
 gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile QCD-32g58]
 gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit
           HymB-like [Clostridium difficile]
 gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
          Length = 628

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y +T++C  C  T C  VCP  C     +    I   +C+ CG C   C  +AI
Sbjct: 573 SYFITDDCKGC--TKCSRVCPAGCITGSVKEQHTIDTSKCLKCGACIDNCTFNAI 625


>gi|14994028|gb|AAK76388.1|AF337952_2 anaerobic ethylbenzene dehydrogenase subunit B [Azoarcus sp. EB1]
          Length = 352

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+ E+   + +  + C     C   CP  AI  
Sbjct: 151 CNHCTNPACLAACPTGAIYKREDNGIVLVDQERCKGHRHCVEACPYKAIYF 201


>gi|297617602|ref|YP_003702761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145439|gb|ADI02196.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 287

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           C+ C    C+EVCP   + + E       P  CI C  C   CP +
Sbjct: 74  CMHCDEPACMEVCPRQAYSKNEWGATVHDPSRCIGCQYCHYACPWN 119


>gi|163737101|ref|ZP_02144519.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
 gi|161389705|gb|EDQ14056.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
          Length = 264

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++   CI CG+C   CP  A + D   G+  
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESNCIGCGLCAWSCPYGARELDLAEGVMK 146


>gi|311105621|ref|YP_003978474.1| sulfur reductase FeS subunit [Achromobacter xylosoxidans A8]
 gi|310760310|gb|ADP15759.1| sulfur reductase FeS subunit [Achromobacter xylosoxidans A8]
          Length = 256

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+ +  +  + C+ C  C   CP DA   + E
Sbjct: 112 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCAYCVQACPYDARFINHE 164


>gi|254512467|ref|ZP_05124534.1| formate dehydrogenase Fe-S subunit [Rhodobacteraceae bacterium
          KLH11]
 gi|221536178|gb|EEE39166.1| formate dehydrogenase Fe-S subunit [Rhodobacteraceae bacterium
          KLH11]
          Length = 169

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
          ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 23 ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 76


>gi|206901010|ref|YP_002251422.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740113|gb|ACI19171.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 369

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C+   CV  CP            +  PD CI CG C   CP  AIK          +
Sbjct: 195 CIGCR--RCVTHCPTGALEMVNKKSVLTRPDLCIGCGECAVVCPTSAIKILWNESA---I 249

Query: 68  KINSEYATQWPNITTKKES 86
            +  + A     I  +KE 
Sbjct: 250 GLQEKMAEFTYGILKQKEP 268


>gi|323474197|gb|ADX84803.1| thiamine pyrophosphate protein domain protein TPP-binding protein
           [Sulfolobus islandicus REY15A]
          Length = 612

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP     + +    I    CI CG C P CP  AI        
Sbjct: 546 VDLEKCTGCSICYDYFTCPAIIPRKDK-KAEIDNYTCIGCGACIPVCPFKAISL-KGDKP 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|307131796|ref|YP_003883812.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Dickeya dadantii
           3937]
 gi|306529325|gb|ADM99255.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Dickeya dadantii
           3937]
          Length = 338

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +      C  C  C   CP +  K D E  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASVCTGCRYCMVACPFNVPKYDYENP 172

Query: 63  LEL 65
           L  
Sbjct: 173 LGK 175


>gi|296134475|ref|YP_003641722.1| sigma54 specific transcriptional regulator, Fis family
          [Thermincola sp. JR]
 gi|296033053|gb|ADG83821.1| sigma54 specific transcriptional regulator, Fis family
          [Thermincola potens JR]
          Length = 731

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 1  MTYV--VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+ V  ++E C  C    CV  CPV           I  + CI CG C   C   A K  
Sbjct: 1  MSVVTTISEKCQRCY--ACVRNCPVKAIKVDRGQAKIIEERCIACGSCVRVCAQKAKKVA 58

Query: 59 TE-PGLELWLKINSE 72
          ++    E +L +  E
Sbjct: 59 SDISKAEYFLAVEKE 73


>gi|206563028|ref|YP_002233791.1| putative dimethyl sulfoxide reductase subunit [Burkholderia
           cenocepacia J2315]
 gi|198039068|emb|CAR55031.1| putative dimethyl sulfoxide reductase subunit [Burkholderia
           cenocepacia J2315]
          Length = 247

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    ++   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASFKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|56476743|ref|YP_158332.1| beta-subunit of ethylbenzene dehydrogenase [Aromatoleum aromaticum
           EbN1]
 gi|116668165|pdb|2IVF|B Chain B, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
 gi|56312786|emb|CAI07431.1| Beta-subunit of ethylbenzene dehydrogenase [Aromatoleum aromaticum
           EbN1]
          Length = 352

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+ E+   + +  + C     C   CP  AI  
Sbjct: 151 CNHCTNPACLAACPTGAIYKREDNGIVLVDQERCKGHRHCVEACPYKAIYF 201


>gi|20807413|ref|NP_622584.1| ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
 gi|20515935|gb|AAM24188.1| Ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
          Length = 74

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + +TE CI C    C   CPVD  YEG+    I P++CIDCG CE  CP  AIK +
Sbjct: 20 AHYITEECISC--GACAAECPVDAIYEGDGKYEIDPEKCIDCGACEAVCPTGAIKAE 74


>gi|314922143|gb|EFS85974.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL001PA1]
 gi|314965227|gb|EFT09326.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL082PA2]
 gi|314982363|gb|EFT26456.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL110PA3]
 gi|315092595|gb|EFT64571.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL110PA4]
 gi|315093987|gb|EFT65963.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL060PA1]
 gi|315104583|gb|EFT76559.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL050PA2]
 gi|327329517|gb|EGE71277.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL103PA1]
          Length = 213

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++VCP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|257790762|ref|YP_003181368.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474659|gb|ACV54979.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 260

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
            C+ C++ +CV VCP     + ++ + I   D CI CG C   CP  A
Sbjct: 58  ACMHCENPECVSVCPTGASQKLDDGVVIVDYDACITCGYCMSACPYGA 105


>gi|303289747|ref|XP_003064161.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454477|gb|EEH51783.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 231

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 129 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 186

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQK 99
                         N EYAT      +  K++ L +  K +    K
Sbjct: 187 VEGP----------NFEYATYTHEELMYDKEKLLDNGDKWEKEIAK 222


>gi|70607818|ref|YP_256688.1| 4Fe-4S binding domain-containing protein [Sulfolobus acidocaldarius
           DSM 639]
 gi|68568466|gb|AAY81395.1| conserved 4Fe-4S binding domain protein [Sulfolobus acidocaldarius
           DSM 639]
          Length = 277

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y +  NC  C +  CV VCPV   ++   +  + +  ++CI C  C   CP      D
Sbjct: 95  YNIPINCFHCMNAPCVPVCPVGATFKRVEDGIVLVDYNKCIGCKYCIYGCPYGNRFFD 152


>gi|237732453|ref|ZP_04562934.1| aegA [Citrobacter sp. 30_2]
 gi|226907992|gb|EEH93910.1| aegA [Citrobacter sp. 30_2]
          Length = 659

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   C   CP        + + ++P +CI C  C   CP   ++    P  +
Sbjct: 56  CHHCEDAPCARSCPNGAISHDNDSVQVNPQKCIGCKSCVVACPFGTMQIVLTPVAK 111


>gi|152981586|ref|YP_001353659.1| formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase
           beta subunit) [Janthinobacterium sp. Marseille]
 gi|151281663|gb|ABR90073.1| formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase
           beta subunit) [Janthinobacterium sp. Marseille]
          Length = 209

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E  +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEEGVVLHDKDICIGCGYCSYACPFGA 102


>gi|68304948|gb|AAY89959.1| predicted DsrO [uncultured bacterium BAC13K9BAC]
          Length = 242

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C +VCP    ++  + +  ++   CI C  C   CP  A     E   + 
Sbjct: 104 CQHCENPPCCDVCPTGASFKRVDGIVMVNQHTCIGCRYCMMACPFKARSFVHETLTQQ 161


>gi|294338873|emb|CAZ87210.1| BoxA (Benzoyl-CoA oxygenase component A) [Thiomonas sp. 3As]
          Length = 424

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  E CI C    C   CPV       N   +  D+C  C  C P CP  AI    +   
Sbjct: 14 IDPEICIRCN--TCEATCPVGAITHDANNYVVDADKCNFCMACVPPCPTGAIDNWRDVPR 71

Query: 64 ELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
          +    +++++   W  +    +        +G
Sbjct: 72 DQAYPLDAQF--GWDVLPEPLDP----QDWEG 97


>gi|257063170|ref|YP_003142842.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790823|gb|ACV21493.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+ +C  C    CV  CP     + E    ++I  + CI  G C   CP  A   + E
Sbjct: 63  YFVSLSCNHCDSPACVAACPTGACMKDEESGVVSIDEEICIGSGECVTACPYFAPSLNEE 122

Query: 61  PGLEL 65
                
Sbjct: 123 TNKGE 127


>gi|193215552|ref|YP_001996751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089029|gb|ACF14304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 199

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C++T C+  CP    Y+ E+ +  I+ D CI C  C   CP DA  P     +E 
Sbjct: 60  CMHCENTPCLSACPTGATYKTEDGIVRINYDRCIGCYACMIACPYDARYPYDGDDVEK 117


>gi|134094637|ref|YP_001099712.1| formate dehydrogenase iron-sulfur subunit FdnH [Herminiimonas
           arsenicoxydans]
 gi|133738540|emb|CAL61585.1| formate dehydrogenase iron-sulfur subunit [Herminiimonas
           arsenicoxydans]
          Length = 209

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  +  +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSYACPFGA 102


>gi|51246839|ref|YP_066723.1| formate dehydrogenase, iron-sulfur chain [Desulfotalea psychrophila
           LSv54]
 gi|50877876|emb|CAG37716.1| probable formate dehydrogenase, iron-sulfur chain [Desulfotalea
           psychrophila LSv54]
          Length = 188

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCPVDCFY  E+ +     ++CI CG C   CP  A
Sbjct: 59  ACMHCADAPCQKVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGA 106


>gi|239626612|ref|ZP_04669643.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239516758|gb|EEQ56624.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 367

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV T+ C+ C    C + C        +   +I   +C+ CG C   CPVDA+    + 
Sbjct: 189 PYVHTDMCVGC--GSCQKNCAHSAITITDRKASIDVKKCVGCGRCIGACPVDAVDTLGDE 246

Query: 62  GLELWLKINSEYATQ 76
             ++   +N + A  
Sbjct: 247 ANDI---LNCKIAEY 258


>gi|153864406|ref|ZP_01997318.1| Anaerobic dimethyl sulfoxide reductase chain B [Beggiatoa sp. SS]
 gi|152146097|gb|EDN72680.1| Anaerobic dimethyl sulfoxide reductase chain B [Beggiatoa sp. SS]
          Length = 253

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y V  +C  C    C+  CP    ++  +N +  I    CI C  CE  CP  A + D 
Sbjct: 109 AYKVNMSCNHCAEPACLPTCPTGAIWKRQDNGVVDIDSTLCIGCRRCEAACPYGAPQFDP 168

Query: 60  EPGLEL 65
             GL  
Sbjct: 169 NDGLVK 174


>gi|90410032|ref|ZP_01218049.1| anaerobic dimethyl sulfoxide reductase subunit B [Photobacterium
           profundum 3TCK]
 gi|90329385|gb|EAS45642.1| anaerobic dimethyl sulfoxide reductase subunit B [Photobacterium
           profundum 3TCK]
          Length = 210

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+ +C  C    C + CP    ++   +  + ++ D C+ C  CE  CP  A + + E
Sbjct: 65  YYVSISCNHCADPACTKACPSGAMHKRKKDGLVVVNEDVCVGCRYCEMACPYGAPQFNKE 124


>gi|307353080|ref|YP_003894131.1| FAD dependent oxidoreductase [Methanoplanus petrolearius DSM 11571]
 gi|307156313|gb|ADN35693.1| FAD dependent oxidoreductase [Methanoplanus petrolearius DSM 11571]
          Length = 428

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 20/82 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-------------CFYEGENFLAI-----HPDECIDCG 44
           YV  E C  C   DC EVCPV+               Y+    +        P+ CIDCG
Sbjct: 98  YVDAELCNGC--GDCYEVCPVEVYNRYDAGLGVRKAIYKPHAQIVPNLAIRDPEHCIDCG 155

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C   C  +A++ D E   E +
Sbjct: 156 LCYDVCGREAVRHDDEDSEEEF 177


>gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 635

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           IHP++CI CG+C   C   AI
Sbjct: 579 TYTINPELCIGC--HLCAKNCPADAISGLVRKPHVIHPEKCIKCGMCMARCKFKAI 632


>gi|315651297|ref|ZP_07904325.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum
           DSM 3986]
 gi|315486449|gb|EFU76803.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum
           DSM 3986]
          Length = 507

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    C EVCP       +   F +I+ ++CI CG C   C  +AI   T P
Sbjct: 117 VTNGCQGCLAHPCAEVCPTGAVKIDKESGFSSINQEKCIKCGRCANVCAYNAIIIQTRP 175



 Score = 36.9 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           E CI C                  C   C +D     EN    I  D+C+ CG C   CP
Sbjct: 152 EKCIKCGRCANVCAYNAIIIQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVNCP 211

Query: 52  VDAI 55
             AI
Sbjct: 212 FGAI 215


>gi|300869677|ref|YP_003784548.1| Fe-hydrogenase large subunit family protein [Brachyspira pilosicoli
           95/1000]
 gi|300687376|gb|ADK30047.1| Fe-hydrogenase large subunit family protein [Brachyspira pilosicoli
           95/1000]
          Length = 490

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C+  CP +      E    I   +CI+CG+C   CP  AI     P
Sbjct: 112 FMVTDACQACLARPCMMNCPKNAITILDEKRAYIDSSKCINCGLCLKNCPYHAIIYIPVP 171

Query: 62  GLE 64
             E
Sbjct: 172 CEE 174



 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            Y+ +  CI C                  C E CPV    + E     I   +CI CG C
Sbjct: 143 AYIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNEQGKEVIDYHKCIFCGNC 202

Query: 47  EPECPVDAIK 56
             ECP  A+ 
Sbjct: 203 MRECPFSAMM 212


>gi|251791771|ref|YP_003006492.1| putative oxidoreductase Fe-S binding subunit [Dickeya zeae Ech1591]
 gi|247540392|gb|ACT09013.1| glutamate synthase, small subunit [Dickeya zeae Ech1591]
          Length = 667

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+ + C  VCP       ++ + +  ++CI C  C   CP  AI  +
Sbjct: 56  CRHCEDSPCANVCPTQALVRKQDGIQLVAEKCIGCKTCVLACPFGAITVE 105



 Score = 39.6 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPD-ECID---CGVCEPECPVDAIKPD 58
           V E CI CK   CV  CP               H    CI       C   CP  A++  
Sbjct: 83  VAEKCIGCK--TCVLACPFGAITVENQAQGATAHKCDLCIGRPEGQACVEACPTQALQLV 140

Query: 59  TEPGLEL 65
           +E  LE 
Sbjct: 141 SEHSLEE 147


>gi|251789031|ref|YP_003003752.1| hydrogenase 2 protein HybA [Dickeya zeae Ech1591]
 gi|247537652|gb|ACT06273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae
           Ech1591]
          Length = 338

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +      C  C  C   CP +  K D E  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASICTGCRYCMVACPFNVPKYDYENP 172

Query: 63  LEL 65
           L  
Sbjct: 173 LGK 175


>gi|254477029|ref|ZP_05090415.1| iron-sulfur cluster-binding protein [Ruegeria sp. R11]
 gi|214031272|gb|EEB72107.1| iron-sulfur cluster-binding protein [Ruegeria sp. R11]
          Length = 237

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++   CI CG+C   CP  A + D   G+  
Sbjct: 60  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESNCIGCGLCAWSCPYGARELDLAEGVMK 119


>gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
 gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
          Length = 635

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           TY +  E CI C    C + CP D           I+PD+CI CG+C   C   AI 
Sbjct: 579 TYTINPELCIGC--HLCFKHCPADAILGDVRKPHVINPDKCIKCGMCMARCKFKAIN 633


>gi|134096493|ref|YP_001101568.1| putative Iron-sulfur cluster-binding protein (partial)
           [Herminiimonas arsenicoxydans]
 gi|133740396|emb|CAL63447.1| Putative iron-sulfur cluster ferredoxin [Herminiimonas
           arsenicoxydans]
          Length = 243

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRESDGLVLVDYDKCIGCNYCAWACPYGARELDE 125


>gi|90407583|ref|ZP_01215764.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Psychromonas sp. CNPT3]
 gi|90311286|gb|EAS39390.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Psychromonas sp. CNPT3]
          Length = 205

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+        + I+   CI C +C   CP  AI  
Sbjct: 51 CRHCEDAPCATVCPVNAITHVNGSIHINESLCIGCTLCSIACPFGAITF 99


>gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 617

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +V + C+ C    C++ CPV     E +    I   +C+ CG C P+C  DAI
Sbjct: 561 TYAIVEDKCVGC--GVCIKACPVGAITGEKKAAHTIDASKCVKCGACVPKCKFDAI 614


>gi|308271987|emb|CBX28595.1| hypothetical protein N47_G39190 [uncultured Desulfobacterium sp.]
          Length = 1029

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V ++ C  C    CV VCP    +   +    I P +C  CGVC  ECP  AI+      
Sbjct: 956  VDSKKCAACL--ICVRVCPFGVPFINADGYSEIDPSKCHGCGVCASECPAKAIQLMQFED 1013

Query: 63   LELWLKI 69
             ++  K+
Sbjct: 1014 DQILAKL 1020


>gi|299066029|emb|CBJ37210.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CMR15]
          Length = 228

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|196230190|ref|ZP_03129053.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Chthoniobacter flavus Ellin428]
 gi|196225787|gb|EDY20294.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Chthoniobacter flavus Ellin428]
          Length = 1088

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGL--EL 65
           C  C++  C  VCPV+     E  L  +  + CI    C   CP    + +       + 
Sbjct: 862 CQHCENAPCETVCPVNATVHNEEGLNVMAYNRCIGTRYCANNCPFKVRRFNFFDYNLRDA 921

Query: 66  WLKINSEYAT---QWPNITTKKESLPSAAKMDGVKQ 98
               N  + T   +W  I+ KK  +    KM     
Sbjct: 922 MGSKNGGWFTGLHKWNLISEKK--MEDTLKMQKNPN 955


>gi|194290506|ref|YP_002006413.1| formate dehydrogenase iron-sulfur subunit [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224341|emb|CAQ70352.1| FORMATE DEHYDROGENASE, IRON-SULFUR SUBUNIT [Cupriavidus taiwanensis
           LMG 19424]
          Length = 232

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|146304360|ref|YP_001191676.1| thiamine pyrophosphate binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145702610|gb|ABP95752.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Metallosphaera sedula DSM 5348]
          Length = 607

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 4   VVT-ENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VV  + C  C  T C +   CP       +    I+P +CI CG C P CP +AIK + E
Sbjct: 540 VVNYDKCTGC--TICYDYFTCPAILKR-SDKKAVINPQDCIGCGACVPVCPFNAIKLEGE 596

Query: 61  PGL 63
             +
Sbjct: 597 KPM 599


>gi|94311692|ref|YP_584902.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355544|gb|ABF09633.1| formate dehydrogenase iron-sulfur subunit [Cupriavidus
           metallidurans CH34]
          Length = 226

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|327400615|ref|YP_004341454.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316123|gb|AEA46739.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 184

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +   C+ C    C++VCP+D  Y+  + +  ++ D CI CG C   CP  A + +
Sbjct: 51  IPMPCMHCSDPACLKVCPMDAIYKRSDGIVLVNKDNCIGCGYCSYACPFGAPQFE 105


>gi|301062599|ref|ZP_07203231.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300443279|gb|EFK07412.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 249

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC+ C+   CVE CP    Y+   +  + I    CI CG C P CP  A     E
Sbjct: 60  NCMQCEKPTCVEACPTGATYKDPLDGTVRIDRRLCIGCGQCLPACPYGARYRHPE 114


>gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
 gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
          Length = 626

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           + +E CI C  T C +VCP             I   +CI+CG C   C   AI  +
Sbjct: 573 INSEKCIGC--TACTKVCPKGAISGEIKKSHVIDKSKCINCGACSSTCKFSAITKE 626


>gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 596

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C  T C +VCP D    +      I  D+C+ CG C   C   AI
Sbjct: 541 YVIDPEKCKGC--TLCAKVCPADAISGKVREPHVIDQDKCVKCGACYTACKFGAI 593



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + CP     +      I P++C  C +C   CP DAI
Sbjct: 527 EKRCPAGKC-KDLVRYVIDPEKCKGCTLCAKVCPADAI 563


>gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum]
          Length = 596

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  + C  C    C + CP +    + +    I  D+CI CG C  +CP DAI 
Sbjct: 543 IDPDKCKGC--GICAKNCPTNAISGKVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594


>gi|254974515|ref|ZP_05270987.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26]
 gi|255091906|ref|ZP_05321384.1| iron-dependent hydrogenase [Clostridium difficile CIP 107932]
 gi|255100005|ref|ZP_05328982.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42]
 gi|255305892|ref|ZP_05350064.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255]
 gi|255313640|ref|ZP_05355223.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55]
 gi|255516324|ref|ZP_05384000.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34]
 gi|255649423|ref|ZP_05396325.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79]
 gi|306519504|ref|ZP_07405851.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58]
 gi|328887576|emb|CAJ67726.2| putative iron-dependent hydrogenase [Clostridium difficile]
          Length = 496

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VT+ C  C    C E C             I+ + C  CG+C+  C  DAI
Sbjct: 105 FTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAI 157



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 18/104 (17%)

Query: 1   MTYVVTENCILCKHT--------------DCVEVCPVDC--FYEGENFLAIHPDECIDCG 44
           M Y+  E C  C                  C  VCP +   F        IH D+C++CG
Sbjct: 134 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCG 193

Query: 45  VCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
            C   CP  AI   +   P     ++    YA   P IT + E+
Sbjct: 194 ACMSACPFGAISDKSLIAPVARKLVQKEKMYAVVAPAITGQVEA 237


>gi|261206240|ref|XP_002627857.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239592916|gb|EEQ75497.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239610912|gb|EEQ87899.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327357611|gb|EGE86468.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 235

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 133 EERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 190

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 191 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 223


>gi|257789890|ref|YP_003180496.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257473787|gb|ACV54107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 190

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           Y +  +C  C + +CV VCP    Y+ ++ +  +   +CI C  C   CP      DT
Sbjct: 53  YYLPVSCQHCDNPECVSVCPTGASYKRDDGVVLVDHSKCIGCQYCVMACPYGVRAYDT 110


>gi|255084007|ref|XP_002508578.1| NADH dehydrogenase [Micromonas sp. RCC299]
 gi|226523855|gb|ACO69836.1| NADH dehydrogenase [Micromonas sp. RCC299]
          Length = 228

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 126 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 183

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQK 99
                         N EYAT      +  K++ L +  K +   QK
Sbjct: 184 VEGP----------NFEYATYTHEELLYDKEKLLANGDKWELEIQK 219


>gi|84386976|ref|ZP_00990000.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio splendidus
           12B01]
 gi|84378266|gb|EAP95125.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio splendidus
           12B01]
          Length = 206

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y ++  C  C +  CV+VCP    ++ +    + +    CI C  C   CP  A + 
Sbjct: 60  SYYLSIACNHCTNPACVKVCPSGAMHKRDEDGLVVVDESVCIGCQHCSNACPYGAPQY 117


>gi|150017381|ref|YP_001309635.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903846|gb|ABR34679.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           beijerinckii NCIMB 8052]
          Length = 282

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C  CK   C   C VD          I  D+CI CG C   CP  A+K + E
Sbjct: 160 VEADMCKGCK--ICERTCKVDAISMVHKKAVIDYDKCISCGQCVKACPFKAMKLEKE 214


>gi|238620942|ref|YP_002915768.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|238382012|gb|ACR43100.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 280

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  C EVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 95  YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 154

Query: 61  PGLEL 65
            G+  
Sbjct: 155 EGVTK 159


>gi|257065425|ref|YP_003145097.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256793078|gb|ACV23748.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 637

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +T+ CI CK       CP   F        +    C  CG+C   CP DAI  +
Sbjct: 585 ITDACIGCKRCITQIGCPAIGF--DGEKAVVDRSLCNGCGLCMQVCPFDAIVKE 636


>gi|157165264|ref|YP_001466214.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
 gi|112801511|gb|EAT98855.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
          Length = 186

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           T  C  C    C +VCPVDCFY   + +     ++CI CG C   CP  A
Sbjct: 53  TIACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGA 102


>gi|315647852|ref|ZP_07900953.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus vortex V453]
 gi|315276498|gb|EFU39841.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus vortex V453]
          Length = 78

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTE 60
          YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI    D  
Sbjct: 2  YVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAIFYFEDLP 61

Query: 61 PGLELWLKINSEYATQ 76
             + +     EY   
Sbjct: 62 EEEKHYFDKAVEYYKN 77


>gi|229580939|ref|YP_002839338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284999038|ref|YP_003420806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|228011655|gb|ACP47416.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284446934|gb|ADB88436.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
          Length = 280

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  C EVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 95  YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 154

Query: 61  PGLEL 65
            G+  
Sbjct: 155 EGVTK 159


>gi|126460205|ref|YP_001056483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249926|gb|ABO09017.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 215

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            V + C  C++  CV+ CP    Y+ E+ L  ++ D CI CG C   CP  A   
Sbjct: 82  FVPKQCNHCENAPCVKPCPTGATYKTEDGLVLVNDDLCIGCGACIQACPYGARFY 136


>gi|114763310|ref|ZP_01442734.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544108|gb|EAU47118.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 638

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 3   YVVTEN--C-------ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           YV TE   C       + C  T C+++CP        + +++ P  C  CG C   CP  
Sbjct: 251 YVRTEPLLCAHSRAGQVGC--TSCLDLCPTGAISPDGDHVSVDPMICAGCGACSSACPSG 308

Query: 54  AIKPDTEPGLELW 66
           AI  D  P    +
Sbjct: 309 AISYDAPPVDLTF 321



 Score = 38.8 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C LC    CV +CP            L    D C+ CG+C   CP DAI  +
Sbjct: 487 VDQDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAIAYE 541


>gi|78043951|ref|YP_358993.1| indolepyruvate ferredoxin oxidoreductase subunit IorA
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996066|gb|ABB14965.1| indolepyruvate ferredoxin oxidoreductase, IorA subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 581

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++E C  C    C+++ CP       +   +I P  C  CGVC   C   AI
Sbjct: 525 VISEKCTGC--QRCLKLGCPAIA--IKDKKASIDPLLCNGCGVCAQVCKFSAI 573


>gi|18313641|ref|NP_560308.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|18161189|gb|AAL64490.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
          Length = 188

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCP    Y+  + L  + P+ CI C  C   CP +A   D +
Sbjct: 63  CQHCDNAPCVAVCPTGASYKDVDGLVKMRPELCIGCKYCMVACPYEARWLDED 115


>gi|291519873|emb|CBK75094.1| Iron only hydrogenase large subunit, C-terminal domain
           [Butyrivibrio fibrisolvens 16/4]
          Length = 492

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C+  C       GE  + I P +C +CG+C  ECP  AI     P
Sbjct: 95  SYSVTDNCRFCLGKACLNSCKFGAITPGERRMHIDPTKCKECGMCAKECPYQAIVHLERP 154



 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 15/68 (22%)

Query: 3   YVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCE 47
           ++    C  C                  C + CPV      E     I  ++CI CG C 
Sbjct: 127 HIDPTKCKECGMCAKECPYQAIVHLERPCKKACPVGAISYDEYGHCVIDDEKCISCGHCI 186

Query: 48  PECPVDAI 55
             CP  AI
Sbjct: 187 HSCPFGAI 194


>gi|251790292|ref|YP_003005013.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Dickeya zeae Ech1591]
 gi|247538913|gb|ACT07534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          zeae Ech1591]
          Length = 208

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C +VCPV+     +N + +  + CI C +C   CP  AI
Sbjct: 51 CRHCEDAPCAKVCPVNTIRHQDNAVLLDENTCIGCKLCAIACPFGAI 97


>gi|296110006|ref|YP_003616955.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295434820|gb|ADG13991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 166

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C+   C EVCPV+  Y  ++++ +  ++CI CG+C   CP  AI  + +  
Sbjct: 44 CQHCRSAPCKEVCPVEAIYFKDSYVYLDLEKCIGCGLCALACPFGAITMEDKAY 97


>gi|257790266|ref|YP_003180872.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474163|gb|ACV54483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 219

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C   +CV+VCP    ++  +    I   +CI C  C   CP +    + E 
Sbjct: 59  YFLPIQCQHCADPECVKVCPTGASHKAADGTVQIDKSKCIGCQFCAMSCPYNVRYLNEEE 118

Query: 62  G 62
            
Sbjct: 119 R 119


>gi|322832179|ref|YP_004212206.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
 gi|321167380|gb|ADW73079.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
          Length = 205

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C +VCP    ++ E+  + ++ D CI C  C   CP  A + + 
Sbjct: 60  AYYLSISCNHCADPACTKVCPSGAMHKREDGFVVVNEDICIGCRYCHMACPYGAPQYNE 118


>gi|302387337|ref|YP_003823159.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium
          saccharolyticum WM1]
 gi|302197965|gb|ADL05536.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium
          saccharolyticum WM1]
          Length = 393

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V+ E C  C    CV+ CP D          I    C  CGVC  +CP DAI+   E   
Sbjct: 5  VIKEKCRGCS--ICVKNCPFDAITMENKLAVI-GTACTGCGVCVEKCPFDAIEKTEEEKE 61

Query: 64 ELWLKINSEYATQWPNITTKKESL 87
           + L   SEY   W     ++ +L
Sbjct: 62 TVDL---SEYRDVWVFAEQREGAL 82


>gi|284175349|ref|ZP_06389318.1| oxydoreductase, putative [Sulfolobus solfataricus 98/2]
 gi|261601282|gb|ACX90885.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 280

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C +  C EVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 95  YNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 154

Query: 61  PGLEL 65
            G+  
Sbjct: 155 EGVTK 159


>gi|193211711|ref|YP_001997664.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobaculum parvum NCIB 8327]
 gi|193085188|gb|ACF10464.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobaculum
           parvum NCIB 8327]
          Length = 260

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C   CP +  ++  + +  +    CI C  C   CP  +   +         
Sbjct: 122 CNHCEEPPCTRACPTEATFKRWDGIVSMDYHRCIGCRFCMAACPYGSRSFNWVDPRPHVA 181

Query: 68  KI 69
           ++
Sbjct: 182 EL 183


>gi|170290696|ref|YP_001737512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174776|gb|ACB07829.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
          Korarchaeum cryptofilum OPF8]
          Length = 116

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
          C  C    C++VCP       E    I     CI CG C   CP  AI  D
Sbjct: 38 CRACSDPSCMKVCPTSALRSREGGGVILDSRLCIGCGYCVKACPFGAIFWD 88



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C +  CV+ CP    +     +   I    C  CG+C   CP   I
Sbjct: 70  CIGCGY--CVKACPFGAIFWDCVNDKPVI----CTHCGLCVDFCPYGVI 112


>gi|24375838|ref|NP_719881.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
 gi|24350797|gb|AAN57325.1|AE015869_1 anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
          Length = 205

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C +  CV+ CP    Y+  +   + ++ D CI C  C   CP DA + D
Sbjct: 63  AYYISISCNHCSNPVCVKACPTGAMYKERSTGLVKVNQDLCIGCESCARACPYDAPQID 121


>gi|121998714|ref|YP_001003501.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121590119|gb|ABM62699.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 237

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  +C+ C    CV+VCP    Y+ +    + +   +C+ C  C   CP    + D
Sbjct: 68  VPVSCMHCDDPPCVDVCPTGASYKRDADGIVLVDETKCMGCNYCAWACPYGCRELD 123


>gi|237725194|ref|ZP_04555675.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265754284|ref|ZP_06089473.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436460|gb|EEO46537.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|263234993|gb|EEZ20548.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 487

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI     
Sbjct: 117 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVYIPV 176

Query: 61  PGLE 64
           P  E
Sbjct: 177 PCEE 180



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E+ +  I  ++CI CG C
Sbjct: 149 AWIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKC 208

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 209 MNACPFGAIF 218


>gi|253700578|ref|YP_003021767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251775428|gb|ACT18009.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 278

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
            E C+ C    C  VCPV  F + +    +     CI C  C   CP    K + 
Sbjct: 80  KEMCMHCNEPACASVCPVGAFTKTKEGPVVYDAKRCIGCRFCMVACPFGVPKYEW 134


>gi|17547091|ref|NP_520493.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           GMI1000]
 gi|17429392|emb|CAD16079.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 231

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|238798700|ref|ZP_04642173.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia mollaretii
           ATCC 43969]
 gi|238717457|gb|EEQ09300.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia mollaretii
           ATCC 43969]
          Length = 205

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y ++  C  C    CV  CP    ++ E    + ++PD C+ C  CE  CP  A + D
Sbjct: 60  YYLSIACNHCSFPTCVTGCPTGAMHKREEDGLVVVNPDLCVGCRYCEMRCPYGAPQFD 117


>gi|323700521|ref|ZP_08112433.1| hypothetical protein DND132_3115 [Desulfovibrio sp. ND132]
 gi|323460453|gb|EGB16318.1| hypothetical protein DND132_3115 [Desulfovibrio desulfuricans
           ND132]
          Length = 239

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   CV VCPV   Y+ EN L  +  D+C+ CG C   CP DA
Sbjct: 89  CNHCEEPACVPVCPVHATYKDENGLVLVDSDKCLACGFCVQACPYDA 135



 Score = 33.4 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           V ++ C+ C    CV+ CP D  Y           
Sbjct: 116 VDSDKCLAC--GFCVQACPYDARYINPVTHTTDKC 148


>gi|282853588|ref|ZP_06262925.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes J139]
 gi|282583041|gb|EFB88421.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes J139]
          Length = 213

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++VCP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|268679442|ref|YP_003303873.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617473|gb|ACZ11838.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 199

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCPVDCFY  E+ +     ++CI CG C   CP  A
Sbjct: 57  ACMHCTDAPCEQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGA 104


>gi|254884686|ref|ZP_05257396.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837479|gb|EET17788.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 488

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI     
Sbjct: 117 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVYIPV 176

Query: 61  PGLE 64
           P  E
Sbjct: 177 PCEE 180



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E+ +  I  ++CI CG C
Sbjct: 149 AWIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKC 208

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 209 MNACPFGAIF 218


>gi|237709652|ref|ZP_04540133.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456288|gb|EEO62009.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 487

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI     
Sbjct: 117 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVYIPV 176

Query: 61  PGLE 64
           P  E
Sbjct: 177 PCEE 180



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E+ +  I  ++CI CG C
Sbjct: 149 AWIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKC 208

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 209 MNACPFGAIF 218


>gi|289830114|ref|ZP_06547545.1| putative dimethyl sulfoxide reductase subunit [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 131

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 10 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 66


>gi|83746723|ref|ZP_00943772.1| Formate dehydrogenase (cytochrome b) iron-sulfur subunit [Ralstonia
           solanacearum UW551]
 gi|207721373|ref|YP_002251814.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           MolK2]
 gi|207742649|ref|YP_002259041.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum IPO1609]
 gi|83726676|gb|EAP73805.1| Formate dehydrogenase (cytochrome b) iron-sulfur subunit [Ralstonia
           solanacearum UW551]
 gi|206586532|emb|CAQ17119.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum MolK2]
 gi|206594043|emb|CAQ60970.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum IPO1609]
          Length = 228

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|148244791|ref|YP_001219485.1| respiratory nitrate reductase beta subunit [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326618|dbj|BAF61761.1| respiratory nitrate reductase beta subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 513

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 175 MMYL-PRLCEHCLNPSCVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYN 233

Query: 59  T 59
            
Sbjct: 234 W 234


>gi|91786840|ref|YP_547792.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91696065|gb|ABE42894.1| formate dehydrogenase beta subunit [Polaromonas sp. JS666]
          Length = 205

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|51245620|ref|YP_065504.1| formate dehydrogenase, beta subunit (iron-sulfur subunit)
           [Desulfotalea psychrophila LSv54]
 gi|50876657|emb|CAG36497.1| probable formate dehydrogenase, beta subunit (iron-sulfur subunit)
           [Desulfotalea psychrophila LSv54]
          Length = 197

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           ++ +C+ C    C+ VCPVD  Y+ ++ + +    +CI CG C   CP  A
Sbjct: 51  ISISCMHCADAPCIAVCPVDAIYQRDDGIVLADKKKCIGCGYCFMACPFGA 101


>gi|34556486|ref|NP_906301.1| putative formate dehydrogenase iron-sulfur subunit [Wolinella
           succinogenes DSM 1740]
 gi|34557139|ref|NP_906954.1| formate dehydrogenase subunit [Wolinella succinogenes DSM 1740]
 gi|34557519|ref|NP_907334.1| putative formate dehydrogenase iron-sulfur subunit [Wolinella
           succinogenes DSM 1740]
 gi|119888|sp|P27273|FDHB_WOLSU RecName: Full=Formate dehydrogenase iron-sulfur subunit
 gi|48508|emb|CAA37990.1| formate dehydrogenase [Wolinella succinogenes]
 gi|34482200|emb|CAE09201.1| PUTATIVE FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT [Wolinella
           succinogenes]
 gi|34482855|emb|CAE09854.1| FORMATE DEHYDROGENASE SUBUNIT [Wolinella succinogenes]
 gi|34483236|emb|CAE10234.1| PUTATIVE FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT [Wolinella
           succinogenes]
          Length = 200

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCPVDCFY   + +     ++CI CG C   CP  A
Sbjct: 58  ACMHCSDAPCAQVCPVDCFYVRADGIVLHDKEKCIGCGYCLYACPFGA 105


>gi|237735082|ref|ZP_04565563.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7]
 gi|229381858|gb|EEO31949.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7]
          Length = 367

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + CI C    C+++C  +     ++  +I  D+C+ CG C   CP DAI    + 
Sbjct: 188 PVVEQDKCIGC--GQCIKICAHNGTSITDHKASIDHDKCVGCGRCIGVCPKDAIVASMDE 245

Query: 62  GLELWLKINSEYATQWPNITT 82
             ++   +N + A     +  
Sbjct: 246 ANDI---LNYKIAEYTKAVVQ 263


>gi|224583440|ref|YP_002637238.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224467967|gb|ACN45797.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 192

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|294776604|ref|ZP_06742073.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|319642355|ref|ZP_07997010.1| hydrogenase [Bacteroides sp. 3_1_40A]
 gi|294449519|gb|EFG18050.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|317386015|gb|EFV66939.1| hydrogenase [Bacteroides sp. 3_1_40A]
          Length = 481

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI     
Sbjct: 110 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVYIPV 169

Query: 61  PGLE 64
           P  E
Sbjct: 170 PCEE 173



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E+ +  I  ++CI CG C
Sbjct: 142 AWIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKC 201

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 202 MNACPFGAIF 211


>gi|300022451|ref|YP_003755062.1| nitrate reductase subunit beta [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524272|gb|ADJ22741.1| nitrate reductase, beta subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 508

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV VCP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAVCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|83591015|ref|YP_431024.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83573929|gb|ABC20481.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 189

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV         + ++   CI C +C   CP   I
Sbjct: 52 CRHCEDAPCARVCPVKAIEIKNQMVYLNEGLCIGCKMCALVCPFGCI 98


>gi|312138684|ref|YP_004006020.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodococcus
           equi 103S]
 gi|311888023|emb|CBH47335.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodococcus
           equi 103S]
          Length = 315

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I     P  +
Sbjct: 126 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQNDICNGCGYCLPACPYGVIDRREGPAGD 185

Query: 65  LWLKINSE 72
             + +  +
Sbjct: 186 PAVGLAQK 193


>gi|271501252|ref|YP_003334277.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270344807|gb|ACZ77572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 339

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +      C  C  C   CP D  K D E  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASICTGCRYCMVACPFDVPKYDYENP 172

Query: 63  LEL 65
           L  
Sbjct: 173 LGK 175


>gi|167757520|ref|ZP_02429647.1| hypothetical protein CLORAM_03070 [Clostridium ramosum DSM 1402]
 gi|167702517|gb|EDS17096.1| hypothetical protein CLORAM_03070 [Clostridium ramosum DSM 1402]
          Length = 371

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + CI C    C+++C  +     ++  +I  D+C+ CG C   CP DAI    + 
Sbjct: 192 PVVEQDKCIGC--GQCIKICAHNGTSITDHKASIDHDKCVGCGRCIGVCPKDAIVASMDE 249

Query: 62  GLELWLKINSEYATQWPNITT 82
             ++   +N + A     +  
Sbjct: 250 ANDI---LNYKIAEYTKAVVQ 267


>gi|197123120|ref|YP_002135071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172969|gb|ACG73942.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 491

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C+   C   CP    Y   N  + +  D CI CG C   CP  A   D
Sbjct: 60  CMQCEAHPCTVDCPSGATYVDANGVVVVDADVCIGCGTCVAACPYGARHVD 110



 Score = 39.2 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           V  + CI C    CV  CP    +       +   
Sbjct: 87  VDADVCIGC--GTCVAACPYGARHVDPVKNVVEKC 119


>gi|11497774|ref|NP_068996.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2650484|gb|AAB91070.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 180

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V + C  C +  CV  CPV+  Y+ E  L  I  + CI CG C   CP  A
Sbjct: 52  FVPKICNHCDNPSCVHACPVNATYKTEEGLVLIDDEICIGCGACIQACPYGA 103


>gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
 gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
          Length = 593

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ +TE CI C    C   CP +C    +     I   +C+ CG CE  C  +AI
Sbjct: 538 SFFITEKCIGC--GACARQCPANCITGEKKMRHTIEQSKCLKCGACETTCKFNAI 590


>gi|320591509|gb|EFX03948.1| NADH-quinone oxidoreductase [Grosmannia clavigera kw1407]
          Length = 243

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                  +   I   +CI CG C+  CPVDAI
Sbjct: 141 EERCIACKL--CEAICPAQAITIEAEERADGSRRTSRYDIDMTKCIYCGFCQESCPVDAI 198

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 199 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 231


>gi|317489347|ref|ZP_07947861.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|316911592|gb|EFV33187.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 190

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           Y +  +C  C + +CV VCP    Y+ ++ +  +   +CI C  C   CP      DT
Sbjct: 53  YYLPVSCQHCDNPECVSVCPTGASYKRDDGVVLVDHSKCIGCQYCVMACPYGVRAYDT 110


>gi|325681301|ref|ZP_08160830.1| protein HymB [Ruminococcus albus 8]
 gi|324106992|gb|EGC01279.1| protein HymB [Ruminococcus albus 8]
          Length = 378

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +V + C  C  T C   CP        +N   I  D+CI CGVC   C   AI
Sbjct: 325 IVADKCKGC--TLCARNCPAGAITGTVKNPHVIDTDKCIKCGVCMSNCKFGAI 375


>gi|260576503|ref|ZP_05844492.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259021226|gb|EEW24533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 245

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+   +  + ++   CI CG+C   CP  A + D
Sbjct: 81  SCLHCQDAPCVPVCPTGASYKRAEDGIVLVNAAACIGCGLCAWACPYGARELD 133


>gi|242239209|ref|YP_002987390.1| nitrate reductase subunit beta [Dickeya dadantii Ech703]
 gi|242131266|gb|ACS85568.1| nitrate reductase, beta subunit [Dickeya dadantii Ech703]
          Length = 520

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRAEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|167725408|ref|ZP_02408644.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei DM98]
          Length = 239

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 83  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 136


>gi|89893295|ref|YP_516782.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332743|dbj|BAE82338.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 201

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCPV   ++ E  +  + PD+CI C  C   CP DA   + E G+  
Sbjct: 63  CNQCQDAPCQTVCPVKATHKDEGGVIVVDPDKCIGCRYCIAACPYDARFLNKETGMAE 120


>gi|329925765|ref|ZP_08280551.1| ferredoxin [Paenibacillus sp. HGF5]
 gi|328939645|gb|EGG35990.1| ferredoxin [Paenibacillus sp. HGF5]
          Length = 78

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTE 60
          YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI    D  
Sbjct: 2  YVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAIYYFEDLP 61

Query: 61 PGLELWLKINSEYATQ 76
             + +     EY   
Sbjct: 62 EDEKHYFDKAVEYYKN 77


>gi|242238729|ref|YP_002986910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          dadantii Ech703]
 gi|242130786|gb|ACS85088.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          dadantii Ech703]
          Length = 208

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C +VCPV+     ++ + +  + C+ C +C   CP  AI
Sbjct: 51 CRHCEDAPCAKVCPVNAIRHEDHAVMLDENACVGCKLCAIACPFGAI 97


>gi|163841886|ref|YP_001626291.1| ferredoxin--NADP reductase [Renibacterium salmoninarum ATCC
          33209]
 gi|162955362|gb|ABY24877.1| ferredoxin--NADP reductase [Renibacterium salmoninarum ATCC
          33209]
          Length = 472

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE---PGLELWLKINSEYATQWPNITTKKESLP 88
           L I P  CID G C   CPVDAI P         + + KIN++Y     +     +  P
Sbjct: 1  MLYIDPKSCIDFGACVDACPVDAIFPIESLLAGPKKAYPKINADYFDAKADPAENVDPAP 60

Query: 89 SAAKMD 94
          +    +
Sbjct: 61 NFHTWN 66


>gi|23014678|ref|ZP_00054482.1| COG1140: Nitrate reductase beta subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 288

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            C  C    C++ CP    Y+ E+ +  I  D+C     C   CP D I  ++
Sbjct: 107 PCNHCTDPACLKACPTRSIYKNEDGIVLIDQDKCEGFQYCVRACPYDKIYYNS 159


>gi|302670217|ref|YP_003830177.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316]
 gi|302394690|gb|ADL33595.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316]
          Length = 490

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y VT+NC  C    C+  C       G+  + I P +C +CG C   CP  AI     P
Sbjct: 95  AYSVTDNCRFCMGKACLNSCAFGAISPGDTHMHIDPAKCKECGKCAAACPYSAIVHLERP 154



 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 15/68 (22%)

Query: 3   YVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCE 47
           ++    C  C                  C + CPV      E     I  D+CI CG C 
Sbjct: 127 HIDPAKCKECGKCAAACPYSAIVHLERPCKKACPVGAITYDEYGYCKIDEDKCIQCGHCI 186

Query: 48  PECPVDAI 55
             CP  AI
Sbjct: 187 HSCPFAAI 194


>gi|99080237|ref|YP_612391.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036517|gb|ABF63129.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 652

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++ CP        + +AI P  C  CG C   CP  AI  D  P   L+L+I
Sbjct: 279 TGC--TRCLDACPTGAITPNGDSVAIDPMICAGCGACASLCPSGAITYDAPPTESLFLRI 336



 Score = 41.1 bits (95), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T+ C LC    CV +CP       E    L    D C+ CG+C   CP DAI  
Sbjct: 499 VDTDACTLCL--SCVSLCPSGALGDNEDLPQLRFQEDACLQCGLCANACPEDAITF 552


>gi|291526378|emb|CBK91965.1| 4Fe-4S binding domain [Eubacterium rectale DSM 17629]
 gi|291526823|emb|CBK92409.1| 4Fe-4S binding domain [Eubacterium rectale M104/1]
          Length = 56

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++C+ C    C   CPV     G++   I  D C+DCG C   CP  AI
Sbjct: 1  MAYVISDSCVSC--GTCAGECPVGAISAGDSQYVIDADSCLDCGTCAGVCPTGAI 53


>gi|258515175|ref|YP_003191397.1| Electron transfer flavoprotein alpha/beta- subunit
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257778880|gb|ACV62774.1| Electron transfer flavoprotein alpha/beta- subunit
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 441

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
          MT  V+  CI C    C+  CP    Y  +N L  +    CI+CG C   CPV AI
Sbjct: 1  MTVNVSNTCIGC--QACISACPHGALYIDDNGLCKVIAKNCIECGGCIGVCPVGAI 54


>gi|300690757|ref|YP_003751752.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           PSI07]
 gi|299077817|emb|CBJ50455.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           PSI07]
          Length = 228

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|257063055|ref|YP_003142727.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790708|gb|ACV21378.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 212

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+ +C+ C   +C+ VCP     + +  +  +  D CI C  C   CP +  + +++ 
Sbjct: 88  YRVSTSCMHCDDPNCMRVCPAGAISKVDAGIVQVDKDLCIGCKYCFQACPYEVPRYNSDS 147

Query: 62  GLE 64
             +
Sbjct: 148 MDK 150


>gi|168818248|ref|ZP_02830248.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344912|gb|EDZ31676.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086497|emb|CBY96268.1| Protein nrfC homolog Flags: Precursor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 192

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|200387861|ref|ZP_03214473.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604959|gb|EDZ03504.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 192

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|171060397|ref|YP_001792746.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170777842|gb|ACB35981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 214

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  ++ +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYRTDDGVVLHDKDICIGCGYCSYACPFGA 101


>gi|168242131|ref|ZP_02667063.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448056|ref|YP_002046112.1| 4Fe-4S binding domain-containing protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194406360|gb|ACF66579.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338597|gb|EDZ25361.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 192

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|89902029|ref|YP_524500.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346766|gb|ABD70969.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 210

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCAYACPFGA 101


>gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
 gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
          Length = 628

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V+  E C  C    C   CP      + +    I    CI CG CE  C   AI  +
Sbjct: 572 FVISPERCRGCSK--CARNCPAGAISGKIKEPYVIDDTRCIKCGACESACAFGAIHIE 627


>gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 488

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+  + C+ C  T C ++CPV+C   + +    I   +CI CG C+ +C  +AI
Sbjct: 433 FVILKDKCVGC--TLCAKICPVECISGQVKQPHVIDQSKCIKCGACQDKCKFEAI 485


>gi|121603744|ref|YP_981073.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120592713|gb|ABM36152.1| formate dehydrogenase beta subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 206

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDICIGCGYCSYACPFGA 101


>gi|315179710|gb|ADT86624.1| tetrathionate reductase, subunit B [Vibrio furnissii NCTC 11218]
          Length = 255

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            + +   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA
Sbjct: 102 AFTLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|294634056|ref|ZP_06712612.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Streptomyces sp.
           e14]
 gi|292830052|gb|EFF88405.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Streptomyces sp.
           e14]
          Length = 327

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I    E 
Sbjct: 147 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQEDVCNGCGYCVPACPYGVIDQRKED 203


>gi|238919751|ref|YP_002933266.1| 4Fe-4S binding domain protein [Edwardsiella ictaluri 93-146]
 gi|238869320|gb|ACR69031.1| 4Fe-4S binding domain protein [Edwardsiella ictaluri 93-146]
          Length = 190

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C  C    CV VCP    +  +N +  +    CI C  C   CP      D
Sbjct: 61  SCQHCADAPCVSVCPTGASFRDDNGIVQVDKSRCIGCDYCVAACPFHVRYLD 112


>gi|269122058|ref|YP_003310235.1| hydrogenase large subunit domain protein [Sebaldella termitidis
           ATCC 33386]
 gi|268615936|gb|ACZ10304.1| hydrogenase large subunit domain protein [Sebaldella termitidis
           ATCC 33386]
          Length = 488

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+NC  C    C++ C        +    I    C  CG C   CP  AI     P
Sbjct: 98  FTVTDNCQNCLTKKCIKSCAFGAISATKKGAYIDKQLCKKCGKCVASCPYHAIVDIERP 156



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            Y+  + C  C                  C + CPVD     EN    I   +CI+CG+C
Sbjct: 128 AYIDKQLCKKCGKCVASCPYHAIVDIERPCKKSCPVDAIEIDENDIAIIDSTKCINCGLC 187

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 188 INNCPFGAI 196


>gi|15219311|ref|NP_173114.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial,
           putative [Arabidopsis thaliana]
 gi|297844602|ref|XP_002890182.1| ATMLO14 [Arabidopsis lyrata subsp. lyrata]
 gi|9989050|gb|AAG10813.1|AC011808_1 Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|16649105|gb|AAL24404.1| Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|20148605|gb|AAM10193.1| putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|21553581|gb|AAM62674.1| NADH:ubiquinone oxidoreductase, putative [Arabidopsis thaliana]
 gi|297336024|gb|EFH66441.1| ATMLO14 [Arabidopsis lyrata subsp. lyrata]
 gi|332191363|gb|AEE29484.1| Alpha-helical ferredoxin [Arabidopsis thaliana]
          Length = 222

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 120 EERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 178 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 210


>gi|300703376|ref|YP_003744978.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CFBP2957]
 gi|299071039|emb|CBJ42348.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 228

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 602

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCPV+        +  I  D C+ CG C   C   AI   T
Sbjct: 541 SYVINPEKCVGC--TACARVCPVNAINGEVKKVHEIDQDACVKCGSCIEVCRFGAISKVT 598

Query: 60  EPGL 63
               
Sbjct: 599 PAVQ 602



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CP     +      I+P++C+ C  C   CPV+AI  + +   E
Sbjct: 529 KTCPAKKC-KDLISYVINPEKCVGCTACARVCPVNAINGEVKKVHE 573


>gi|212704179|ref|ZP_03312307.1| hypothetical protein DESPIG_02234 [Desulfovibrio piger ATCC 29098]
 gi|212672383|gb|EEB32866.1| hypothetical protein DESPIG_02234 [Desulfovibrio piger ATCC 29098]
          Length = 260

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCP    Y   +  +A+    CI C  C   CP  A   +       ++
Sbjct: 121 CNHCTNPPCVRVCPTQATYQMEDGIIAMDYHRCIGCRFCMAGCPFGARSFN-------FV 173

Query: 68  KINSEYATQWPN 79
                 +   PN
Sbjct: 174 DPRKYLSDPVPN 185


>gi|331000171|ref|ZP_08323861.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
 gi|329572656|gb|EGG54291.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
          Length = 194

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V   C  C    CV+VCP       E +  + I   +CI CG C   CP  A   D  
Sbjct: 61  YYVPVGCNECADPACVKVCPTKAHFKRESDGLVLIDEKKCIGCGACAQACPYGAPVLDET 120

Query: 61  PGLEL 65
                
Sbjct: 121 AHKMH 125



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 9/78 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIK 56
           +  + CI C    C + CP       E    +H  +     +       C   CP  AI+
Sbjct: 95  IDEKKCIGC--GACAQACPYGAPVLDETAHKMHKCDACADRLAQGLLPICVEACPQRAIE 152

Query: 57  PDTEPGLELWLKINSEYA 74
                 L      N+  A
Sbjct: 153 FGEISELRKKFGDNANIA 170


>gi|330829820|ref|YP_004392772.1| hydrogenase 4 Fe-S subunit [Aeromonas veronii B565]
 gi|328804956|gb|AEB50155.1| Hydrogenase 4 Fe-S subunit [Aeromonas veronii B565]
          Length = 221

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C    C++VCPV+   +  + + ++   CI C +C   CP  AI+
Sbjct: 51 CRHCDDAPCIKVCPVEAIRQTGDCVQLNESLCIGCNLCAVACPFGAIQ 98


>gi|260768009|ref|ZP_05876943.1| tetrathionate reductase subunit B [Vibrio furnissii CIP 102972]
 gi|260616039|gb|EEX41224.1| tetrathionate reductase subunit B [Vibrio furnissii CIP 102972]
          Length = 255

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            + +   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA
Sbjct: 102 AFTLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 597

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            E C  C    C+  CP             I P  CI CG C   C  DA+  +  P
Sbjct: 542 PEACTGC--GMCMRACPAGAISGDRREPHVIDPHLCIACGSCREACHFDAVLTERRP 596



 Score = 33.8 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CP     +   F  I P+ C  CG+C   CP  AI  D     
Sbjct: 525 KECPAGVCAKLTQFA-IEPEACTGCGMCMRACPAGAISGDRREPH 568


>gi|295091990|emb|CBK78097.1| Uncharacterized Fe-S center protein [Clostridium cf.
           saccharolyticum K10]
          Length = 368

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +++ + CI C    C   C        E    I   +C+ CG C   CPVDA+    + 
Sbjct: 190 PFILQDQCIGC--HACERDCAHGAISFPEKKAFIDESKCVGCGRCIGVCPVDAVANHCDE 247

Query: 62  GLELWLKINSEYATQW 77
             ++   +N + A   
Sbjct: 248 SNDI---LNKKIAEYT 260


>gi|62180643|ref|YP_217060.1| hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168466286|ref|ZP_02700156.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|62128276|gb|AAX65979.1| Hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|195631429|gb|EDX49989.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|322715114|gb|EFZ06685.1| hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 192

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|16760995|ref|NP_456612.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16765394|ref|NP_461009.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29141309|ref|NP_804651.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56413035|ref|YP_150110.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|167990974|ref|ZP_02572073.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168229378|ref|ZP_02654436.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238800|ref|ZP_02663858.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168259639|ref|ZP_02681612.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194442552|ref|YP_002041331.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194468539|ref|ZP_03074523.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736046|ref|YP_002115097.1| 4Fe-4S binding domain-containing protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250292|ref|YP_002147021.1| 4Fe-4S binding domain-containing protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197265686|ref|ZP_03165760.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197361959|ref|YP_002141596.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|213161811|ref|ZP_03347521.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425575|ref|ZP_03358325.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213583790|ref|ZP_03365616.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213648906|ref|ZP_03378959.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213850286|ref|ZP_03381184.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|238913454|ref|ZP_04657291.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|289825943|ref|ZP_06545102.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392917|sp|P0A1I1|PHSB_SALTY RecName: Full=Thiosulfate reductase electron transport protein phsB
 gi|60392918|sp|P0A1I2|PHSB_SALTI RecName: Full=Thiosulfate reductase electron transport protein phsB
 gi|25285316|pir||AC0763 thiosulfate reductase electron transport protein PhsB phsB
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|755677|gb|AAC36935.1| thiosulfate reductase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16420595|gb|AAL20968.1| hydrogen sulfide production iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16503293|emb|CAD02425.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136936|gb|AAO68500.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56127292|gb|AAV76798.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194401215|gb|ACF61437.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194454903|gb|EDX43742.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711548|gb|ACF90769.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197093436|emb|CAR58893.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197213995|gb|ACH51392.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243941|gb|EDY26561.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288421|gb|EDY27802.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205330523|gb|EDZ17287.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205335941|gb|EDZ22705.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205351209|gb|EDZ37840.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|261247278|emb|CBG25102.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994114|gb|ACY88999.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301158625|emb|CBW18136.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913055|dbj|BAJ37029.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321224709|gb|EFX49772.1| Thiosulfate reductase electron transport protein phsB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130387|gb|ADX17817.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988999|gb|AEF07982.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 192

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|167551004|ref|ZP_02344759.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324031|gb|EDZ11870.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 192

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|153869109|ref|ZP_01998797.1| DSMO reductase subunit B [Beggiatoa sp. PS]
 gi|152074346|gb|EDN71210.1| DSMO reductase subunit B [Beggiatoa sp. PS]
          Length = 244

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKREADGIVLVDYDKCIGCKYCSWACPYGAREYD 124


>gi|307131280|ref|YP_003883296.1| nitrate reductase 1, beta (Fe-S) subunit [Dickeya dadantii 3937]
 gi|306528809|gb|ADM98739.1| nitrate reductase 1, beta (Fe-S) subunit [Dickeya dadantii 3937]
          Length = 520

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRAEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|251789463|ref|YP_003004184.1| nitrate reductase subunit beta [Dickeya zeae Ech1591]
 gi|247538084|gb|ACT06705.1| nitrate reductase, beta subunit [Dickeya zeae Ech1591]
          Length = 520

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRSEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|213024433|ref|ZP_03338880.1| hydrogen sulfide production: iron- sulfur subunit; electron
          transfer [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 171

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 52 SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 98


>gi|119899770|ref|YP_934983.1| formate dehydrogenase iron-sulfur subunit [Azoarcus sp. BH72]
 gi|119672183|emb|CAL96097.1| probable formate dehydrogenase iron-sulfur subunit [Azoarcus sp.
           BH72]
          Length = 202

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+ E  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYKAEGGVVLHDKDLCIGCGYCFFACPFGA 101


>gi|325832620|ref|ZP_08165418.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|325485941|gb|EGC88401.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 190

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           Y +  +C  C + +CV VCP    Y+ ++ +  +   +CI C  C   CP      DT
Sbjct: 53  YYLPVSCQHCDNPECVSVCPTGASYKRDDGVVLVDHSKCIGCQYCVMACPYGVRAYDT 110


>gi|315299687|gb|EFU58929.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
          Length = 459

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 327 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 374


>gi|207857499|ref|YP_002244150.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|206709302|emb|CAR33642.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 192

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|144897604|emb|CAM74468.1| anaerobic dimethyl sulfoxide reductase chain B [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 244

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 75  SCLHCEDPPCVPVCPTGASYKRESDGIVLVDYDKCIGCKYCSWNCPYGAREFDE 128


>gi|323141275|ref|ZP_08076171.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414232|gb|EFY05055.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 272

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V    CI C    C + CP++     E    I+   CI CGVC+  CPV AI  
Sbjct: 216 VDKNQCIGC--GLCEKKCPMESAELAEGKAQINQHNCICCGVCQHACPVQAISY 267


>gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
 gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C  T C +VCP      + +    I  ++C+ CG C   C   AI
Sbjct: 542 YVIDPEKCKGC--TLCAKVCPAGAVTGKLKEAHVIDQEKCVKCGACFSACKFGAI 594


>gi|308051297|ref|YP_003914863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307633487|gb|ADN77789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 562

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPGLELWLK 68
            C  T C+ VCP D     ++ + + P  C   G C   CP  A+  D  T   L+ ++K
Sbjct: 197 GC--TRCLNVCPADAIESVDHKITVDPHLCHGAGSCTAACPTGALSYDQPTPAILKDYVK 254

Query: 69  IN----SEYATQWPNITTKKESLPSAA 91
                  E + Q P +    +S   AA
Sbjct: 255 RLLTRYLELSDQRPAVVLHDDSAGEAA 281



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    C  +CP     +G     L      C+ CG+CE  CP  AI
Sbjct: 425 VDVDKCTLC--MSCAALCPSRALMDGGDSPALKFTEQACVQCGLCERACPEKAI 476


>gi|295115197|emb|CBL36044.1| Uncharacterized Fe-S center protein [butyrate-producing bacterium
           SM4/1]
          Length = 368

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +++ + CI C    C   C        E    I   +C+ CG C   CPVDA+    + 
Sbjct: 190 PFILQDQCIGC--HACERDCAHGAISFPEKKAFIDESKCVGCGRCIGVCPVDAVANHCDE 247

Query: 62  GLELWLKINSEYATQW 77
             ++   +N + A   
Sbjct: 248 SNDI---LNKKIAEYT 260


>gi|282600016|ref|ZP_05972728.2| electron transport protein HydN [Providencia rustigianii DSM 4541]
 gi|282566768|gb|EFB72303.1| electron transport protein HydN [Providencia rustigianii DSM 4541]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       ++F+ +   +CI C  C   CP   ++  + P  +    
Sbjct: 83  CRQCEDAPCANVCPNGAISRKDDFVYVDQAKCIGCKTCVIACPYGTMEVISRPVEQQVTA 142

Query: 69  INS 71
           +N+
Sbjct: 143 LNT 145


>gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 635

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           TY +  E CI C    C + CP D           I+PD+CI CG+C   C   AI 
Sbjct: 579 TYTINPELCIGC--HLCFKHCPADAILGDVRKPHVINPDKCIKCGMCMARCKFKAIN 633


>gi|210623084|ref|ZP_03293571.1| hypothetical protein CLOHIR_01521 [Clostridium hiranonis DSM 13275]
 gi|210153887|gb|EEA84893.1| hypothetical protein CLOHIR_01521 [Clostridium hiranonis DSM 13275]
          Length = 309

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  CK      VCPV      +  + +  D+CI+CG C  +C   A+
Sbjct: 172 DKCKSCKKCAVEAVCPVGAAKLVDGTMVVDYDKCINCGRCIEKCYFKAM 220


>gi|198246136|ref|YP_002216149.1| 4Fe-4S binding domain-containing protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197940652|gb|ACH77985.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326623895|gb|EGE30240.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 192

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|90410731|ref|ZP_01218746.1| hydrogenase 4 Fe-S subunit [Photobacterium profundum 3TCK]
 gi|90328362|gb|EAS44660.1| hydrogenase 4 Fe-S subunit [Photobacterium profundum 3TCK]
          Length = 204

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C +VCPV    +  + + ++   CI C +C   CP  AI  D
Sbjct: 51  CRHCEDAPCAKVCPVQAITKEGDRVLLNETLCIGCTLCAVACPFGAIAFD 100


>gi|73670980|ref|YP_306995.1| hypothetical protein Mbar_A3546 [Methanosarcina barkeri str.
           Fusaro]
 gi|72398142|gb|AAZ72415.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 438

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E C+ CK    +E CP+      EN    +P+ C +CG+C   C  +A
Sbjct: 330 PEKCLNCKDCLVIEACPMGAVSRRENGAVHNPEFCFNCGLCISRCRGEA 378


>gi|257064377|ref|YP_003144049.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792030|gb|ACV22700.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 174

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ +C+ C+   C+EVCP     +     + +  D CI C  C   CP  A   D
Sbjct: 59  VSVSCMHCEKPACLEVCPAGAISKTIGGIVVVDKDLCIGCKYCYQACPFQAPHYD 113


>gi|241765326|ref|ZP_04763303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241364964|gb|EER59889.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|283797800|ref|ZP_06346953.1| iron-sulfur cluster-binding protein [Clostridium sp. M62/1]
 gi|291074483|gb|EFE11847.1| iron-sulfur cluster-binding protein [Clostridium sp. M62/1]
          Length = 368

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +++ + CI C    C   C        E    I   +C+ CG C   CPVDA+    + 
Sbjct: 190 PFILQDQCIGC--HACERDCAHGAISFPEKKAFIDESKCVGCGRCIGVCPVDAVANHCDE 247

Query: 62  GLELWLKINSEYATQW 77
             ++   +N + A   
Sbjct: 248 SNDI---LNKKIAEYT 260


>gi|225575176|ref|ZP_03783786.1| hypothetical protein RUMHYD_03265 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037609|gb|EEG47855.1| hypothetical protein RUMHYD_03265 [Blautia hydrogenotrophica DSM
           10507]
          Length = 317

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
              + C  CK    ++ CPV+     +    I PD C +CG C   C  DA++    
Sbjct: 169 FDEDECNGCKKCSVIDACPVNAVKMVDGVAEIDPDICTNCGRCIGHCHFDALEEGKP 225


>gi|329913103|ref|ZP_08275888.1| Formate dehydrogenase-O, iron-sulfur subunit [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545421|gb|EGF30633.1| Formate dehydrogenase-O, iron-sulfur subunit [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 208

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C+ VCPVDCFY  +  +     D CI CG C   CP  A
Sbjct: 55  ACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCAYACPFGA 102


>gi|257064384|ref|YP_003144056.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792037|gb|ACV22707.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C++ +CV+VCP +   +  +    I   +CI C  C   CP      + E 
Sbjct: 59  YFLNVQCQHCENPECVKVCPTEASRKMPDGTVQIDKAKCIGCQFCVMSCPYGVRYLNEEE 118


>gi|210620710|ref|ZP_03292196.1| hypothetical protein CLOHIR_00139 [Clostridium hiranonis DSM 13275]
 gi|210155211|gb|EEA86217.1| hypothetical protein CLOHIR_00139 [Clostridium hiranonis DSM 13275]
          Length = 501

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C E C             I  D+C  CG C+  C  DAI     P
Sbjct: 107 FTVTDLCRGCLAHRCKESCKFGAISYINGRAYIDQDKCKSCGACKKACQYDAISEMIRP 165



 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 16/70 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFY--EGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C  VCP       +  +   IH ++C++CG 
Sbjct: 137 AYIDQDKCKSCGACKKACQYDAISEMIRPCKSVCPTGALDINKDTSKAIIHEEKCVNCGA 196

Query: 46  CEPECPVDAI 55
           C   CP  AI
Sbjct: 197 CMSACPFGAI 206


>gi|90577567|ref|ZP_01233378.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
 gi|90440653|gb|EAS65833.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
          Length = 210

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C    C +VCP    ++ E    + ++ D CI C  C   CP  A +   
Sbjct: 62  SYYLSISCNHCSDPACTKVCPSGAMHKREEDGLVVVNEDVCIGCKYCHMACPYGAPQYSE 121

Query: 60  E 60
           E
Sbjct: 122 E 122


>gi|83590235|ref|YP_430244.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573149|gb|ABC19701.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 182

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++  C  C    CV  CP    Y+ E+ + +   ++CI C  C   CP  A +     
Sbjct: 52  YHISLGCNHCAQAPCVRNCPTGALYKREDGIVMQDRNKCIGCRYCVWSCPYGAPQYIASE 111


>gi|310658522|ref|YP_003936243.1| iron-sulfur protein [Clostridium sticklandii DSM 519]
 gi|308825300|emb|CBH21338.1| putative iron-sulfur protein [Clostridium sticklandii]
          Length = 418

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +NCI CK   CV VCPV CF    +  ++ + ++ + C+ CGVC+  C ++AI+ 
Sbjct: 288 DNCISCKK--CVSVCPVGCFEIKVFNDKDKVVLNSELCLGCGVCQRVCSINAIEM 340


>gi|308048358|ref|YP_003911924.1| respiratory nitrite reductase specific menaquinol--cytochrome-c
           reductase complex Fe-S cluster containing subunit NrfC
           [Ferrimonas balearica DSM 9799]
 gi|307630548|gb|ADN74850.1| respiratory nitrite reductase specific menaquinol--cytochrome-c
           reductase complex Fe-S cluster containing subunit NrfC
           [Ferrimonas balearica DSM 9799]
          Length = 219

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   C+ VCP    +  EN +  + P +C+ C  C   CP      D
Sbjct: 89  SCVHCETAACIAVCPTGACFRDENGVVDVDPYKCVGCQYCIAACPYRVRYVD 140


>gi|197118647|ref|YP_002139074.1| formate dehydrogenase iron-sulfur subunit [Geobacter bemidjiensis
           Bem]
 gi|197088007|gb|ACH39278.1| formate dehydrogenase, iron-sulfur subunit [Geobacter bemidjiensis
           Bem]
          Length = 279

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
            E C+ C    C  VCPV  F + +    +     CI C  C   CP    K + 
Sbjct: 81  KEMCMHCNEPACASVCPVGAFKKTKEGPVVYDAKRCIGCRFCMVACPFGVPKYEW 135


>gi|88603408|ref|YP_503586.1| cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
 gi|88188870|gb|ABD41867.1| Cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
          Length = 289

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             + T++CI C    C E C  D   +      + P  C  CG C   CP DA+  
Sbjct: 62  AVIDTKSCIGC--GICAEACVYDAIQKVGEIYEVVPYRCEGCGTCTIVCPEDAVSM 115



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 27 YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + G +   I    CI CG+C   C  DAI+   E
Sbjct: 56 FRGMDGAVIDTKSCIGCGICAEACVYDAIQKVGE 89


>gi|114319795|ref|YP_741478.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226189|gb|ABI55988.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 254

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    CV  CP    ++ ++ +  +    C  C +C P CP DA   D E
Sbjct: 60  RCQHCDDAPCVSACPTGAAWKRDDGIVLVDDPLCSGCELCVPACPYDARWLDPE 113


>gi|327398596|ref|YP_004339465.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Hippea maritima DSM 10411]
 gi|327181225|gb|AEA33406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Hippea maritima DSM 10411]
          Length = 202

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C++  C  VCP    Y  ++ +  I  D C+ CG C   CP DA     +  LE 
Sbjct: 64  CMHCENPPCHSVCPTGATYINKDGIVLIDYDLCLGCGYCIEACPYDARYEYEKEDLEK 121


>gi|160935281|ref|ZP_02082663.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441639|gb|EDP19339.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
          Length = 507

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VT+ C  C    C EVCP D            I+ D+CI CG C   C   AI     P
Sbjct: 116 FVTDGCQGCLAHPCEEVCPKDAIKLDRTNGRSHINDDKCIKCGRCADVCSYKAIIIQERP 175



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
           +++  + CI C                  C   C +D     EN    I  D+C+ CG+C
Sbjct: 147 SHINDDKCIKCGRCADVCSYKAIIIQERPCAAACGMDAISTDENGKADIDYDKCVSCGMC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|51894427|ref|YP_077118.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
 gi|51858116|dbj|BAD42274.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
          Length = 456

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M ++  E C  C+   C EVCPVD           +  + C+ CG C   C       D 
Sbjct: 1   MIFIDQELCTGCR--RCAEVCPVDAIVGEPGKPQSVDQEICVMCGQCVQVCSSYGSIWDD 58

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                       + A +   + + KE L   A  +  + K  K    +P
Sbjct: 59  GLTPRE-----QKLAER-GLLPSVKEPL--FAAWNEGRAKLVKEALADP 99


>gi|294634352|ref|ZP_06712890.1| nitrate reductase, beta subunit [Edwardsiella tarda ATCC 23685]
 gi|291092249|gb|EFE24810.1| nitrate reductase, beta subunit [Edwardsiella tarda ATCC 23685]
          Length = 518

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I+ D+C    +C   CP   I  +
Sbjct: 188 MMYL-PRLCEHCLNPACVASCPSGAIYKRAEDGVVLINQDQCRGWRMCVSACPYKKIYYN 246

Query: 59  TE 60
            +
Sbjct: 247 WK 248


>gi|302889235|ref|XP_003043503.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256724420|gb|EEU37790.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 211

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 109 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTKYDIDMTKCIYCGFCQESCPVDAI 166

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 167 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 199


>gi|226329122|ref|ZP_03804640.1| hypothetical protein PROPEN_03025 [Proteus penneri ATCC 35198]
 gi|225202308|gb|EEG84662.1| hypothetical protein PROPEN_03025 [Proteus penneri ATCC 35198]
          Length = 209

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           T+ C  CK  +C++VCPV      E F  + +    CI C  C   CP   
Sbjct: 121 TDTCRQCKDPECMKVCPVKAIRYQEEFGCIVVDTRRCIGCAACTTACPWMM 171


>gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
 gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
          Length = 628

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ + C  C  T C   CPV+      +N   I P +CI CG C   C  +AI
Sbjct: 575 ILEDKCKGC--TLCARNCPVNAITGTVKNPHKIDPAKCIKCGACMERCKFNAI 625


>gi|328952398|ref|YP_004369732.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
 gi|328452722|gb|AEB08551.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
          Length = 1473

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
             YV  + C+ C +  C+  CP            + I P  C  CG C   CP  AI
Sbjct: 1403 AYVNPDACVGCLN--CLRACPYGVPEFNRELDSIVIDPASCHGCGNCCATCPAMAI 1456



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           Y+  E C  C   DC +VCPV+     +  +
Sbjct: 106 YIDLEKCNAC--GDCAKVCPVEMPSAFDEGM 134


>gi|256826664|ref|YP_003150623.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582807|gb|ACU93941.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 179

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C+   C  VCP    + G + +  +    CI C  C   CP      D E
Sbjct: 58  CMHCEDAPCAAVCPTGAAHIGADGIVAVDEGRCIGCKYCMAACPYQVRVCDEE 110


>gi|218883674|ref|YP_002428056.1| Indolepyruvate oxidoreductase subunit iorA [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765290|gb|ACL10689.1| Indolepyruvate oxidoreductase subunit iorA [Desulfurococcus
           kamchatkensis 1221n]
          Length = 637

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +V + CI C     +  CP      G     I  + C  CG+C   CP  AI     P  
Sbjct: 572 IVEDKCIGCMACVNLTACPAIIVPAGSKKPIILEELCNGCGLCASICPYKAITVKNTPSP 631

Query: 64  ELWLKI 69
           E W K+
Sbjct: 632 E-WEKL 636


>gi|113868891|ref|YP_727380.1| formate dehydrogenase iron-sulfur subunit [Ralstonia eutropha H16]
 gi|113527667|emb|CAJ94012.1| formate dehydrogenase iron-sulfur subunit [Ralstonia eutropha H16]
          Length = 225

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|51245519|ref|YP_065403.1| iron-sulfur cluster-binding protein [Desulfotalea psychrophila
           LSv54]
 gi|50876556|emb|CAG36396.1| related to iron-sulfur cluster-binding protein [Desulfotalea
           psychrophila LSv54]
          Length = 401

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    C+E+C            + +    C+ CG C   C   A++ + E G++ +
Sbjct: 224 KCVGC--GLCMELCQHGALSLDSNKKIQVDDQLCVGCGACLLACKTGALQVNWETGIQEF 281

Query: 67  LKINSEYATQWPNITTKKES 86
           L+   EYA     + TKK  
Sbjct: 282 LEKMMEYA--LAVLKTKKSP 299


>gi|167771184|ref|ZP_02443237.1| hypothetical protein ANACOL_02542 [Anaerotruncus colihominis DSM
          17241]
 gi|167666603|gb|EDS10733.1| hypothetical protein ANACOL_02542 [Anaerotruncus colihominis DSM
          17241]
          Length = 501

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +V E C  C  T C + CPV      E    +  ++C +CGVC   C   AI
Sbjct: 3  IVNEKCKGC--TICSKNCPVGAIEMVERKAVVSAEKCCECGVCTRVCKFGAI 52


>gi|237731331|ref|ZP_04561812.1| iron-sulfur cluster-binding protein [Citrobacter sp. 30_2]
 gi|226906870|gb|EEH92788.1| iron-sulfur cluster-binding protein [Citrobacter sp. 30_2]
          Length = 239

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++C  C    C+EVCP    +  EN +  +    CI C  C   CP      + +  +  
Sbjct: 107 QSCQHCDDAPCIEVCPTGASWRDENGIVRVDTSCCIGCSYCIGACPYQVRYLNPQTKVAD 166

Query: 66  WLKINSE--YATQWPNI 80
                +E   A  +P I
Sbjct: 167 KCDFCAESRLAKGFPPI 183



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 12/80 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAI 55
           V T  CI C +  C+  CP    Y           + C +  +       C   CP  A+
Sbjct: 136 VDTSCCIGCSY--CIGACPYQVRYLNPQTKVADKCDFCAESRLAKGFPPICVNACPEHAL 193

Query: 56  KP--DTEPGLELWLKINSEY 73
               +  P ++ WL+ N  Y
Sbjct: 194 IFGREDSPEIQTWLRENKYY 213


>gi|242766902|ref|XP_002341262.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724458|gb|EED23875.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 225

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 123 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 180

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 181 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 213


>gi|34733215|gb|AAQ81583.1| formate dehydrogenase subunit B [Sulfurospirillum multivorans]
          Length = 200

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCPVDCFY  E+ +     ++CI CG C   CP  A
Sbjct: 57  ACMHCTDAPCEQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGA 104


>gi|50120186|ref|YP_049353.1| hydrogenase-4 component A [Pectobacterium atrosepticum SCRI1043]
 gi|49610712|emb|CAG74157.1| hydrogenase-4 component A [Pectobacterium atrosepticum SCRI1043]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+        + ++   CI C +C   CP  AI
Sbjct: 51 CRQCEDAPCARVCPVNAITHENAAIVLNESLCIGCKLCGLVCPFGAI 97


>gi|259484821|tpe|CBF81370.1| TPA: hypothetical protein similar to : Formate hydrogenlyase
           subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit
           (Broad) [Aspergillus nidulans FGSC A4]
          Length = 224

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 122 EERCIACKL--CEAVCPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 179

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 180 VE----------TANAEYATETREELLYNKEKLLANGDKWEPE 212


>gi|237752044|ref|ZP_04582524.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229376611|gb|EEO26702.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 209

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V+  C+ C    C +VCPVDCFY   + +       CI CG C   CP  A
Sbjct: 63  VSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 113


>gi|161613328|ref|YP_001587293.1| hypothetical protein SPAB_01039 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362692|gb|ABX66460.1| hypothetical protein SPAB_01039 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 192

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|325832002|ref|ZP_08165099.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 family
           protein [Eggerthella sp. HGA1]
 gi|325486323|gb|EGC88775.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 family
           protein [Eggerthella sp. HGA1]
          Length = 263

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
            C+ C++ +CV VCP     + ++ + I   D CI CG C   CP  A
Sbjct: 58  ACMHCENPECVSVCPTGASQKLDDGVVIVDYDACITCGYCMSACPYGA 105


>gi|317488527|ref|ZP_07947075.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912361|gb|EFV33922.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 258

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
            C+ C++ +CV VCP     + ++ + I   D CI CG C   CP  A
Sbjct: 53  ACMHCENPECVSVCPTGASQKLDDGVVIVDYDACITCGYCMSACPYGA 100


>gi|282164659|ref|YP_003357044.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit
           A/F420-non-reducing hydrogenase iron-sulfur subunit D
           [Methanocella paludicola SANAE]
 gi|282156973|dbj|BAI62061.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit
           A/F420-non-reducing hydrogenase iron-sulfur subunit D
           [Methanocella paludicola SANAE]
          Length = 786

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  E C  C    CV++CP    Y     + I P  CI  G C   CP  AI
Sbjct: 571 AVIDHEKCTSC--GACVKLCPYGAAY-TNGRITIDPLSCIGLGGCILRCPEHAI 621



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 20/80 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           ++  + C+ C    C + CPV    E                        I    C  CG
Sbjct: 239 HIDPKKCMSC--GKCAQACPVTVKDEWNAMLSKRKAAYRPFPQAVPSSYTIDDKACKKCG 296

Query: 45  VCEPECPVDAIKPDTEPGLE 64
            C   C   AI    E  +E
Sbjct: 297 SCVKACGAGAIDLSAEGTVE 316


>gi|241663767|ref|YP_002982127.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|240865794|gb|ACS63455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 222

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|161502772|ref|YP_001569884.1| hypothetical protein SARI_00823 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864119|gb|ABX20742.1| hypothetical protein SARI_00823 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 198

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 69  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 115


>gi|187929657|ref|YP_001900144.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|309781575|ref|ZP_07676310.1| formate dehydrogenase [Ralstonia sp. 5_7_47FAA]
 gi|187726547|gb|ACD27712.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|308919680|gb|EFP65342.1| formate dehydrogenase [Ralstonia sp. 5_7_47FAA]
          Length = 222

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ +     D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|89072806|ref|ZP_01159363.1| anaerobic dimethyl sulfoxide reductase, subunit B [Photobacterium
           sp. SKA34]
 gi|89051328|gb|EAR56783.1| anaerobic dimethyl sulfoxide reductase, subunit B [Photobacterium
           sp. SKA34]
          Length = 210

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C    C +VCP    ++ E    + ++ D CI C  C   CP  A +   
Sbjct: 62  SYYLSISCNHCSDPACTKVCPSGAMHKREEDGLVVVNEDVCIGCKYCHMACPYGAPQYSE 121

Query: 60  E 60
           E
Sbjct: 122 E 122


>gi|330448648|ref|ZP_08312296.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328492839|dbj|GAA06793.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 186

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C+   C  VCPV    +  + + ++   C+ C +C   CP  AI  D
Sbjct: 33 CRHCEDAPCAAVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFD 82


>gi|294495627|ref|YP_003542120.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
 gi|292666626|gb|ADE36475.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
          Length = 784

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + CI C    C +VC             +    C  CG C   CPVDAI      
Sbjct: 573 AHVDYDTCIGC--GVCTDVCDYGTIKIENGKAFVDEVSCHGCGTCSAACPVDAISMHNHT 630

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 631 DEQVRAQIKAAL 642



 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 19/74 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV  E C  C   +C  VCPV+     ++                     I  D C+ CG
Sbjct: 237 YVSEEKCKGCVD-ECSRVCPVEIPSRFDSGLGKSRAINIPIPQAVPQVAYIDGDYCVGCG 295

Query: 45  VCEPECPVDAIKPD 58
           +C   CP DA++ +
Sbjct: 296 LCAQACPADAVEFE 309


>gi|224371439|ref|YP_002605603.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2]
 gi|223694156|gb|ACN17439.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2]
          Length = 122

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M ++  E C  C    C++ C V+     E+   I  DECI CGVC   CP +A++ D E
Sbjct: 1  MPWINKELCTGC--QTCIDECSVEAISMEEDIAFIDEDECIRCGVCHDVCPENAVRHDGE 58

Query: 61 PGLEL 65
             E 
Sbjct: 59 RIPEE 63


>gi|255536839|ref|XP_002509486.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus
           communis]
 gi|223549385|gb|EEF50873.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus
           communis]
          Length = 222

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 120 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 178 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 210


>gi|294636197|ref|ZP_06714614.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
 gi|291090498|gb|EFE23059.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
          Length = 190

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C  C+   CV VCP    +  E+ +  +    CI C  C   CP      D
Sbjct: 61  SCQHCEAAPCVAVCPTGASFRDEDGIVQVDQSRCIGCDYCVAACPFHVRYLD 112


>gi|269137608|ref|YP_003294308.1| nitrate reductase beta subunit [Edwardsiella tarda EIB202]
 gi|267983268|gb|ACY83097.1| nitrate reductase beta subunit [Edwardsiella tarda EIB202]
 gi|304557677|gb|ADM40341.1| Respiratory nitrate reductase beta chain [Edwardsiella tarda
           FL6-60]
          Length = 506

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I+ D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKRAEDGVVLINQDQCRGWRMCVSACPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|257452669|ref|ZP_05617968.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 580

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 526 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 577


>gi|154498762|ref|ZP_02037140.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC
          29799]
 gi|150272152|gb|EDM99356.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC
          29799]
          Length = 447

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C  T C++ CP +         AI    CIDCGVC   CP  AIK  ++P   
Sbjct: 14 RCRGC--TTCIKSCPTEAIRVRNGKAAILNARCIDCGVCIQVCPHKAIKSISDPLDM 68


>gi|121702465|ref|XP_001269497.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
 gi|119397640|gb|EAW08071.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
          Length = 228

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 126 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 183

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 184 VE----------TSNAEYATETREELLYNKEKLLANGDKWEPE 216


>gi|110800553|ref|YP_697264.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
 gi|110675200|gb|ABG84187.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAI 152



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 20/68 (29%)

Query: 7   ENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +                   +        I   +CI CG C  
Sbjct: 135 EKCKEC--GKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAIK 56
           +CP  AI 
Sbjct: 193 DCPFGAIM 200


>gi|224050711|ref|XP_002196899.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial [Taeniopygia guttata]
          Length = 235

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 133 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 190

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 191 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 223


>gi|78043263|ref|YP_360108.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995378|gb|ABB14277.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 205

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + CI C    C +VCPV           I+ + C  C  CE  CP  AI  
Sbjct: 13 DKCIGC--QTCAKVCPVLAIKIENKKPVINAEMCRGCAACEQRCPQYAINM 61


>gi|78222168|ref|YP_383915.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78193423|gb|ABB31190.1| Indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
           [Geobacter metallireducens GS-15]
          Length = 601

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ C  C++      CP   + E E  +AI    C DCGVC   CP  AI
Sbjct: 546 ISDACNGCRYCTTQFECPALVYDEEEKRVAIDTLICTDCGVCIDVCPRLAI 596


>gi|294102514|ref|YP_003554372.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Aminobacterium colombiense DSM 12261]
 gi|293617494|gb|ADE57648.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Aminobacterium colombiense DSM 12261]
          Length = 622

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 22/57 (38%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI CK       CP   F E      I    C+ CGVC   CP  AI    E
Sbjct: 565 VDPEKCIGCKFCINFFNCPGLVFDEAGKKAYIDERFCVSCGVCSKVCPHGAIVAMEE 621


>gi|257466530|ref|ZP_05630841.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 580

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 526 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 577


>gi|38704092|ref|NP_311370.2| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|168748463|ref|ZP_02773485.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4113]
 gi|168756250|ref|ZP_02781257.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4401]
 gi|168761087|ref|ZP_02786094.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4501]
 gi|168768570|ref|ZP_02793577.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4486]
 gi|168773608|ref|ZP_02798615.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4196]
 gi|168778444|ref|ZP_02803451.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4076]
 gi|168787824|ref|ZP_02812831.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC869]
 gi|168798849|ref|ZP_02823856.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC508]
 gi|195936624|ref|ZP_03082006.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
 gi|208807942|ref|ZP_03250279.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4206]
 gi|208813253|ref|ZP_03254582.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4045]
 gi|208821290|ref|ZP_03261610.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4042]
 gi|209397372|ref|YP_002271950.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4115]
 gi|217327252|ref|ZP_03443335.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. TW14588]
 gi|254794426|ref|YP_003079263.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|261223086|ref|ZP_05937367.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261259362|ref|ZP_05951895.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          FRIK966]
 gi|187770591|gb|EDU34435.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4196]
 gi|188017141|gb|EDU55263.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4113]
 gi|189003522|gb|EDU72508.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4076]
 gi|189356587|gb|EDU75006.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4401]
 gi|189362213|gb|EDU80632.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4486]
 gi|189368471|gb|EDU86887.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4501]
 gi|189372351|gb|EDU90767.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC869]
 gi|189378564|gb|EDU96980.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC508]
 gi|208727743|gb|EDZ77344.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4206]
 gi|208734530|gb|EDZ83217.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4045]
 gi|208741413|gb|EDZ89095.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4042]
 gi|209158772|gb|ACI36205.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4115]
 gi|217319619|gb|EEC28044.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. TW14588]
 gi|254593826|gb|ACT73187.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|320188813|gb|EFW63472.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. EC1212]
 gi|320640985|gb|EFX10469.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. G5101]
 gi|320646267|gb|EFX15194.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H- str. 493-89]
 gi|320651773|gb|EFX20153.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H- str. H 2687]
 gi|320657158|gb|EFX24967.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. 3256-97
          TW 07815]
 gi|320662764|gb|EFX30096.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320667804|gb|EFX34715.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. LSU-61]
 gi|326340276|gb|EGD64080.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. 1125]
 gi|326344961|gb|EGD68705.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. 1044]
          Length = 205

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   CV+VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCVQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|309776266|ref|ZP_07671256.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915985|gb|EFP61735.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 308

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    CV +CP       E  + I P +CI C  C   CPV A+  + E
Sbjct: 55  CIQC--QSCVNICPKHAISLSEQRIQIDPRQCIGCMQCLSFCPVHALSNEGE 104


>gi|271500362|ref|YP_003333387.1| nitrate reductase subunit beta [Dickeya dadantii Ech586]
 gi|270343917|gb|ACZ76682.1| nitrate reductase, beta subunit [Dickeya dadantii Ech586]
          Length = 519

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRAEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|258513534|ref|YP_003189756.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257777239|gb|ACV61133.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 443

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C  T+CV+ CP +     E    I  + CIDCG C   CP  A
Sbjct: 11 DEDKCKGC--TNCVKRCPTEAIRVREGRALIIEERCIDCGECIKICPNRA 58


>gi|169343278|ref|ZP_02864288.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
 gi|169298576|gb|EDS80657.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAI 152



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 20/68 (29%)

Query: 7   ENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +                   +        I   +CI CG C  
Sbjct: 135 EKCKEC--GKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAIK 56
           +CP  AI 
Sbjct: 193 DCPFGAIM 200


>gi|220917911|ref|YP_002493215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955765|gb|ACL66149.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C+   C   CP    Y   N  + +  D CI CG C   CP  A   D
Sbjct: 59  CMQCEAHPCTVDCPSGATYVDANGVVVVDADVCIGCGTCVAACPYGARHVD 109



 Score = 40.7 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           V  + CI C    CV  CP    +       +   
Sbjct: 86  VDADVCIGC--GTCVAACPYGARHVDPVKHVVEKC 118


>gi|158522308|ref|YP_001530178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511134|gb|ABW68101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 378

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V T+ CI C   DCV  C         EGE    I+ ++C+ CG C   CP  +++    
Sbjct: 197 VKTKTCIGC--GDCVAHCAHGAIRLVKEGEKKALINEEKCVGCGECIVVCPTGSVQIQWN 254

Query: 61  PGLELWLKINSEY 73
                +L+   EY
Sbjct: 255 QAGPAFLEKMVEY 267


>gi|209921900|ref|YP_002295979.1| thiosulfate reductase iron-sulfur subunit [Escherichia coli SE11]
 gi|209915393|dbj|BAG80464.1| thiosulfate reductase iron-sulfur subunit [Escherichia coli SE11]
          Length = 192

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    +  EN +  I    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASHRDENGIVQIDKSRCIGCDYCVAACPFH 109


>gi|168205840|ref|ZP_02631845.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
 gi|170662681|gb|EDT15364.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAI 152



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 20/68 (29%)

Query: 7   ENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +                   +        I   +CI CG C  
Sbjct: 135 EKCKEC--GKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAIK 56
           +CP  AI 
Sbjct: 193 DCPFGAIM 200


>gi|116624728|ref|YP_826884.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116227890|gb|ABJ86599.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 247

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ V + C  C  + CV+VCPV   +   + +  +  D C+ C  C   CP        E
Sbjct: 113 SFFVPKLCNHCVDSPCVQVCPVGATFVSPDGVVLVDKDYCLGCRYCVQACPYGCRYLHPE 172


>gi|331674371|ref|ZP_08375131.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA280]
 gi|331068465|gb|EGI39860.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA280]
          Length = 644

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 58  TVACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|269105012|ref|ZP_06157708.1| hydrogenase 4 Fe-S subunit [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161652|gb|EEZ40149.1| hydrogenase 4 Fe-S subunit [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 216

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C  VCPV    + ++ + ++   C+ C +C   CP  AI  D
Sbjct: 65  CRHCEDAPCAAVCPVQAITKQDDRVLLNETLCVGCTLCAVACPFGAIAFD 114


>gi|121533863|ref|ZP_01665689.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307374|gb|EAX48290.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 271

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           C  C    CV VCP    ++ ++  + +    C  CG C   CP D
Sbjct: 108 CNHCSEPACVSVCPTGATFKRDDGIVVVDDTICWGCGYCINACPYD 153


>gi|307266903|ref|ZP_07548422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326389885|ref|ZP_08211449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter ethanolicus JW 200]
 gi|306918060|gb|EFN48315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325994153|gb|EGD52581.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter ethanolicus JW 200]
          Length = 56

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  AIK +
Sbjct: 1  MAHYITDECISC--GACAAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAIKAE 56


>gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 589

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E CI C  T C + CPVD    E +    I    CI CG C+  CPV AI  +
Sbjct: 536 IDPEKCIGC--TKCAKNCPVDAISGEIKKPHVIDDSICIRCGKCKVSCPVGAISVE 589



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M ++V   C          VCP    Y       I P++CI C  C   CPVDAI  +
Sbjct: 515 MAHIVDHRCP-------ATVCPSLIHYI------IDPEKCIGCTKCAKNCPVDAISGE 559


>gi|227828749|ref|YP_002830529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|229585960|ref|YP_002844462.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|227460545|gb|ACP39231.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|228021010|gb|ACP56417.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 280

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  C    C EVCPV   ++   +  + +  +ECI    C   CP      D  
Sbjct: 95  YNIPINCFHCVSAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 154

Query: 61  PGLEL 65
            G+  
Sbjct: 155 EGVTK 159


>gi|182624288|ref|ZP_02952073.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
 gi|177910506|gb|EDT72879.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAI 152



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 20/68 (29%)

Query: 7   ENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +                   +        I   +CI CG C  
Sbjct: 135 EKCKEC--GKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAIK 56
           +CP  AI 
Sbjct: 193 DCPFGAIM 200


>gi|204929112|ref|ZP_03220255.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321656|gb|EDZ06855.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613670|gb|EFY10610.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620241|gb|EFY17110.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623287|gb|EFY20128.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630492|gb|EFY27261.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632831|gb|EFY29576.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638836|gb|EFY35530.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640343|gb|EFY37002.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647151|gb|EFY43650.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648978|gb|EFY45421.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653884|gb|EFY50208.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660991|gb|EFY57220.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663068|gb|EFY59275.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668513|gb|EFY64668.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673352|gb|EFY69455.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679138|gb|EFY75192.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683233|gb|EFY79248.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685897|gb|EFY81887.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195184|gb|EFZ80365.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198752|gb|EFZ83852.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202396|gb|EFZ87439.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209219|gb|EFZ94155.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209798|gb|EFZ94721.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216124|gb|EGA00854.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220676|gb|EGA05123.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223729|gb|EGA08036.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231335|gb|EGA15449.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232573|gb|EGA16670.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240984|gb|EGA25024.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245597|gb|EGA29592.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247627|gb|EGA31576.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251070|gb|EGA34944.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257468|gb|EGA41159.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263361|gb|EGA46895.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266320|gb|EGA49809.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271464|gb|EGA54886.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 192

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFQ 109


>gi|322833148|ref|YP_004213175.1| nitrate reductase, subunit beta [Rahnella sp. Y9602]
 gi|321168349|gb|ADW74048.1| nitrate reductase, beta subunit [Rahnella sp. Y9602]
          Length = 511

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MAYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|227501607|ref|ZP_03931656.1| ferredoxin [Corynebacterium accolens ATCC 49725]
 gi|306835772|ref|ZP_07468773.1| ferredoxin [Corynebacterium accolens ATCC 49726]
 gi|227077632|gb|EEI15595.1| ferredoxin [Corynebacterium accolens ATCC 49725]
 gi|304568346|gb|EFM43910.1| ferredoxin [Corynebacterium accolens ATCC 49726]
          Length = 95

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYA 74
          CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +         +   N+ + 
Sbjct: 5  CVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDDVPDEWIDYNDANAAFF 64

Query: 75 T 75
           
Sbjct: 65 D 65


>gi|89892418|gb|ABD78998.1| HI1046-like protein [Haemophilus influenzae]
          Length = 122

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYD 117


>gi|18311557|ref|NP_563491.1| [Fe] hydrogenase [Clostridium perfringens str. 13]
 gi|168213503|ref|ZP_02639128.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
 gi|168217341|ref|ZP_02642966.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
 gi|18146241|dbj|BAB82281.1| probable hydrogenase [Clostridium perfringens str. 13]
 gi|170715055|gb|EDT27237.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
 gi|182380626|gb|EDT78105.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAI 152



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 20/68 (29%)

Query: 7   ENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +                   +        I   +CI CG C  
Sbjct: 135 EKCKEC--GKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAIK 56
           +CP  AI 
Sbjct: 193 DCPFGAIM 200


>gi|291085425|ref|ZP_06353063.2| protein NrfC [Citrobacter youngae ATCC 29220]
 gi|291070960|gb|EFE09069.1| protein NrfC [Citrobacter youngae ATCC 29220]
          Length = 239

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++C  C    C+EVCP    +  EN +  +    CI C  C   CP      +    +  
Sbjct: 107 QSCQHCDDAPCIEVCPTGASWRDENGIVRVDKSSCIGCSYCIGACPYQVRYLNPRTKVAD 166

Query: 66  WLKINSE--YATQWPNI 80
                +E   A  +P I
Sbjct: 167 KCDFCAESRLAKGFPPI 183



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 12/80 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAI 55
           V   +CI C +  C+  CP    Y           + C +  +       C   CP  A+
Sbjct: 136 VDKSSCIGCSY--CIGACPYQVRYLNPRTKVADKCDFCAESRLAKGFPPICVNACPEHAL 193

Query: 56  KP--DTEPGLELWLKINSEY 73
               +  P ++ WL+ N  Y
Sbjct: 194 IFGREDSPEIQTWLRENKYY 213


>gi|255629169|gb|ACU14929.1| unknown [Glycine max]
          Length = 222

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CP DAI
Sbjct: 120 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPGDAI 177

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 178 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 210


>gi|238751995|ref|ZP_04613480.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
 gi|238709829|gb|EEQ02062.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
          Length = 205

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y ++  C  C    CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D
Sbjct: 59  SYYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFD 117


>gi|212528252|ref|XP_002144283.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073681|gb|EEA27768.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 225

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 123 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 180

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 181 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 213


>gi|313765371|gb|EFS36735.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL013PA1]
 gi|313815223|gb|EFS52937.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL059PA1]
 gi|313828528|gb|EFS66242.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL063PA2]
 gi|314915985|gb|EFS79816.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL005PA4]
 gi|314916891|gb|EFS80722.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL050PA1]
 gi|314921532|gb|EFS85363.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL050PA3]
 gi|314931144|gb|EFS94975.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL067PA1]
 gi|314954799|gb|EFS99205.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL027PA1]
 gi|314958965|gb|EFT03067.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL002PA1]
 gi|315099767|gb|EFT71743.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL059PA2]
 gi|315101927|gb|EFT73903.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL046PA1]
 gi|315110353|gb|EFT82329.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL030PA2]
 gi|327454802|gb|EGF01457.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL087PA3]
 gi|327455657|gb|EGF02312.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL083PA2]
 gi|328755857|gb|EGF69473.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL087PA1]
 gi|328756638|gb|EGF70254.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL025PA2]
          Length = 213

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++ CP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKACPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|239787653|emb|CAX84120.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein precursor
           [uncultured bacterium]
          Length = 244

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+H  C  VCP    ++ ++ L  +    CI C  C   CP  A
Sbjct: 103 CNHCEHPPCKHVCPTAATFQRQDGLVLVDMHRCIGCRYCIIACPYKA 149


>gi|238918219|ref|YP_002931733.1| nitrate reductase, beta subunit, [Edwardsiella ictaluri 93-146]
 gi|238867787|gb|ACR67498.1| nitrate reductase, beta subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 506

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I+ D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKRAEDGVVLINQDQCRGWRMCVSACPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|188586889|ref|YP_001918434.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351576|gb|ACB85846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 226

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTD-CVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ E CI C+    C EVCP +    +       I  DEC+ CG C   CP + I  D  
Sbjct: 120 IIPETCIQCEEPVMCAEVCPQNAIGSHPETGARVIDEDECVGCGECVDACPWEMIAMDPN 179

Query: 61  PG 62
             
Sbjct: 180 DN 181



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPD 58
           +  + C+ C   +CV+ CP +      N         C     C   CP  AI  +
Sbjct: 154 IDEDECVGC--GECVDACPWEMIAMDPNDNVAAKCHMCHGDPQCAANCPNGAISLE 207


>gi|168209817|ref|ZP_02635442.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
 gi|170712096|gb|EDT24278.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAI 152



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 20/68 (29%)

Query: 7   ENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +                   +        I   +CI CG C  
Sbjct: 135 EKCKEC--GKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAIK 56
           +CP  AI 
Sbjct: 193 DCPFGAIM 200


>gi|295659241|ref|XP_002790179.1| NADH-quinone oxidoreductase subunit I 2 [Paracoccidioides
           brasiliensis Pb01]
 gi|30351132|gb|AAP23044.1| ferredoxin-like iron-sulfur protein [Paracoccidioides brasiliensis]
 gi|226281884|gb|EEH37450.1| NADH-quinone oxidoreductase subunit I 2 [Paracoccidioides
           brasiliensis Pb01]
          Length = 229

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 185 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 217


>gi|325295518|ref|YP_004282032.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065966|gb|ADY73973.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 215

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCPV     G+N++ ++ ++CIDC +C   CP  AI+P+ +
Sbjct: 59  CRQCDDAPCANVCPVGALRFGKNYIEVYEEKCIDCKMCVMVCPFGAIRPEEK 110


>gi|269139191|ref|YP_003295892.1| hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Edwardsiella tarda EIB202]
 gi|267984852|gb|ACY84681.1| hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Edwardsiella tarda EIB202]
 gi|304559108|gb|ADM41772.1| Thiosulfate reductase electron transport protein PhsB [Edwardsiella
           tarda FL6-60]
          Length = 190

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C  C    CV VCP    +  +N +  +    CI C  C   CP      D
Sbjct: 61  SCQHCADAPCVSVCPTGASFRDDNGIVQVDKSRCIGCDYCVAACPFHVRYLD 112


>gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 619

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           T+V+  E C  C    C   CP       +     I   +CI CG C   C  DAI 
Sbjct: 563 TFVIDKEKCNGC--GKCARSCPAGAITGEKKMPHEIDITKCIKCGACLAGCKFDAIY 617



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           + CP     E   F  I  ++C  CG C   CP  AI  + +   E+ +
Sbjct: 551 KRCPAGACTELLTF-VIDKEKCNGCGKCARSCPAGAITGEKKMPHEIDI 598


>gi|323196185|gb|EFZ81343.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
          Length = 117

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|197286375|ref|YP_002152247.1| hydrogenase-4 component A [Proteus mirabilis HI4320]
 gi|227357429|ref|ZP_03841783.1| hydrogenase-4 component A [Proteus mirabilis ATCC 29906]
 gi|194683862|emb|CAR45000.1| hydrogenase-4 component A [Proteus mirabilis HI4320]
 gi|227162387|gb|EEI47387.1| hydrogenase-4 component A [Proteus mirabilis ATCC 29906]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+     +N + ++   CI C +C   CP  AI
Sbjct: 51 CRHCEDAPCASVCPVNAITHEDNMIFLNESLCIGCKLCGLVCPFGAI 97


>gi|46126979|ref|XP_388043.1| NUIM_NEUCR NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial precursor (Complex I-23KD) (CI-23KD)
           [Gibberella zeae PH-1]
          Length = 213

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 111 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTKYDIDMTKCIYCGFCQESCPVDAI 168

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 169 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 201


>gi|295094175|emb|CBK83266.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Coprococcus sp. ART55/1]
          Length = 56

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++CI C    C   CPV    +      I   +CI CG C   CPV  I  +
Sbjct: 1  MAFVIGDSCIGC--GSCAGACPVGAISDNGGVFVIDGSQCISCGACAGSCPVGTIAEE 56


>gi|160893574|ref|ZP_02074358.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50]
 gi|163814830|ref|ZP_02206218.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC
          27759]
 gi|156864559|gb|EDO57990.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50]
 gi|158449769|gb|EDP26764.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC
          27759]
          Length = 56

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++CI C    C   CPV    +      I   +CI CG C   CPV  I  +
Sbjct: 1  MAFVIGDSCIGC--GSCAGSCPVGAISDNGGVFVIDGSQCISCGACAGSCPVGTISEE 56


>gi|14521496|ref|NP_126972.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           abyssi GE5]
 gi|14194881|sp|Q9UZ57|IORA_PYRAB RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|5458715|emb|CAB50202.1| iorA indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Pyrococcus abyssi GE5]
          Length = 648

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C  CK       CP   +   +    + P  C  CG C   CP DA +   E
Sbjct: 589 VNEDKCTGCKICINAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVRE 645


>gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 626

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M+Y +  + C  C    C  +CP      E +    I   +CI CG C   C   AI+
Sbjct: 569 MSYEIDKDKCKGCSK--CARMCPAGAITGEIKKPYTIDQSKCIKCGACMDGCAFKAIQ 624


>gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22]
 gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22]
          Length = 635

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 579 TYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
 gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
          Length = 635

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 579 TYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|89893640|ref|YP_517127.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89333088|dbj|BAE82683.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           + +   C  C +  CV+ CPV   Y+  E+ L I   D+CI C +C   CP +A   + +
Sbjct: 59  HHIPVGCQHCANPACVKACPVGATYKREEDGLVIQDYDKCIGCRMCMVACPYNARSFNWK 118


>gi|56478497|ref|YP_160086.1| phenylacetyl-CoA:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
 gi|56314540|emb|CAI09185.1| Phenylacetyl-CoA:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
          Length = 215

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V  +C+ C    C EVCP     +  + L  I  D CI C  C   CP +A     E  
Sbjct: 53  FVPISCMHCDEPPCEEVCPTTATKKRADGLVTIDYDTCIGCANCVMACPYEARSIVHEAK 112

Query: 63  L 63
            
Sbjct: 113 F 113


>gi|3929358|sp|O24143|NDUS8_TOBAC RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|1666177|emb|CAA70326.1| NADH dehydrogenase [Nicotiana tabacum]
          Length = 230

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 128 EERCIACKL--CEAICPAQAITIEAEAREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 185

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 186 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 218


>gi|222054732|ref|YP_002537094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221564021|gb|ACM19993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 284

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
            E C+ C    C  VCPV  F + +    +     CI C  C   CP    K + 
Sbjct: 81  KEMCMHCNDPACASVCPVGAFNKTKEGPVVYDTKRCIGCRFCMVACPFGVPKYEW 135


>gi|300814154|ref|ZP_07094437.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511811|gb|EFK39028.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 317

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   C + CP D  +  +N   I  ++CI+CG C   CP  AI  +    +    +
Sbjct: 217 CISCKM--CEKNCPKDAIHVEDNLARIDYEKCINCGKCVSVCPTGAIFCEYPDRVAKMKE 274

Query: 69  INSE 72
              E
Sbjct: 275 REKE 278



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C    CV VC  D  +       +  ++C+ C  C   CP   I
Sbjct: 144 CGGGTCVSVCEFDAIHMVNGVAQVDKEKCVACMKCINICPKGII 187


>gi|255994340|ref|ZP_05427475.1| protein HymB [Eubacterium saphenum ATCC 49989]
 gi|255993053|gb|EEU03142.1| protein HymB [Eubacterium saphenum ATCC 49989]
          Length = 593

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           TY + + C+ C  T C   CPV            I  ++CI CG C   C   ++  D
Sbjct: 538 TYTILDTCVGC--TACARNCPVGAITGSPKGQHVIDQEKCIKCGKCLESCRFSSVNLD 593


>gi|238792476|ref|ZP_04636109.1| Respiratory nitrate reductase beta subunit [Yersinia intermedia
           ATCC 29909]
 gi|238728111|gb|EEQ19632.1| Respiratory nitrate reductase beta subunit [Yersinia intermedia
           ATCC 29909]
          Length = 479

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 141 MMYL-PRLCEHCLNPACVATCPSGAIYKRAEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 199

Query: 59  TE 60
            +
Sbjct: 200 WK 201


>gi|11499962|ref|NP_071208.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2650708|gb|AAB91278.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 182

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+H  CV VCP    Y  E+ +  I  D CI C  C   CP  A     E     
Sbjct: 59  CQHCEHPGCVHVCPTGASYVNEDGIVLIDYDLCIGCKYCMVACPYLARYIHPERHTPD 116


>gi|21673330|ref|NP_661395.1| polysulfide reductase, subunit B, putative [Chlorobium tepidum TLS]
 gi|21646423|gb|AAM71737.1| polysulfide reductase, subunit B, putative [Chlorobium tepidum TLS]
          Length = 199

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++T C+  CP    +  ++ +  ++ D CI C  C   CP DA        ++   
Sbjct: 60  CMHCENTPCLSACPTGATHMNKDGIVLVNYDRCIGCYACCIACPYDARYAYDSEDVQKER 119

Query: 68  KI 69
           ++
Sbjct: 120 EL 121


>gi|89897348|ref|YP_520835.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336796|dbj|BAE86391.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 175

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C+   C E CPV  + + E+ + +   ++CI CG+C   CP +A K + +      
Sbjct: 58  ACMHCEKPACAEACPVKAYTKREDGIVVQDHEKCIGCGMCVSACPYEAPKLNKDKKKAEK 117

Query: 67  LKI 69
            ++
Sbjct: 118 CEL 120


>gi|15803004|ref|NP_289034.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 EDL933]
 gi|291283701|ref|YP_003500519.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. CB9615]
 gi|12516866|gb|AAG57591.1|AE005478_1 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933]
 gi|13362813|dbj|BAB36766.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|209763668|gb|ACI80146.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763670|gb|ACI80147.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763672|gb|ACI80148.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763674|gb|ACI80149.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763676|gb|ACI80150.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|290763574|gb|ADD57535.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. CB9615]
          Length = 218

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   CV+VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCVQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|323484489|ref|ZP_08089855.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum
           WAL-14163]
 gi|323692550|ref|ZP_08106783.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323402267|gb|EGA94599.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum
           WAL-14163]
 gi|323503416|gb|EGB19245.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 439

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 14/72 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE------------GENFLAIHPDECIDCGVCEPECP 51
           V  E CI C    C +VCPV                 G     +  D C+ CGVC   CP
Sbjct: 290 VNMETCIGC--GKCAKVCPVLAIRMEEENPSGEGEKTGRRKAVVDKDICLGCGVCVRNCP 347

Query: 52  VDAIKPDTEPGL 63
           V AI+ +  P  
Sbjct: 348 VSAIRLEKRPVQ 359



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH 36
             V  + C+ C    CV  CPV      +  + I 
Sbjct: 329 AVVDKDICLGC--GVCVRNCPVSAIRLEKRPVQII 361



 Score = 34.2 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           P+          +++ + CI CG C   CPV AI+ + E
Sbjct: 277 PMQPVATTNYIPSVNMETCIGCGKCAKVCPVLAIRMEEE 315


>gi|319936762|ref|ZP_08011175.1| nitroreductase [Coprobacillus sp. 29_1]
 gi|319808319|gb|EFW04884.1| nitroreductase [Coprobacillus sp. 29_1]
          Length = 266

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----KPDT 59
          +  E CI C    C++ CP       +   AI   ECI CG C   CP +A+      D 
Sbjct: 17 INKEKCIGC--QMCIKDCPAHNIEFKDKKAAIIDKECIMCGHCVAICPKNAVIISGYTDH 74

Query: 60 EPGLELWLKIN 70
              E  + +N
Sbjct: 75 PIIREKDVNLN 85


>gi|317052597|ref|YP_004113713.1| nitrate reductase subunit beta [Desulfurispirillum indicum S5]
 gi|316947681|gb|ADU67157.1| nitrate reductase, beta subunit [Desulfurispirillum indicum S5]
          Length = 493

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 1   MTYV-VTENCILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           M +  +   C  C +  CV  CP    Y+ GE+ +  I+ ++C    +C   CP      
Sbjct: 175 MAFFYLPRRCNHCLNAACVAGCPSGAIYKRGEDGVVLINQEKCRGWRMCVSACPYKKTYY 234

Query: 58  DT 59
           + 
Sbjct: 235 NW 236


>gi|282882923|ref|ZP_06291528.1| electron transport complex, rnfaBcdge type, b subunit
           [Peptoniphilus lacrimalis 315-B]
 gi|281297334|gb|EFA89825.1| electron transport complex, rnfaBcdge type, b subunit
           [Peptoniphilus lacrimalis 315-B]
          Length = 317

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   C + CP D  +  +N   I  ++CI+CG C   CP  AI  +    +    +
Sbjct: 217 CISCKM--CEKNCPKDAIHVEDNLARIDYEKCINCGKCVSVCPTGAIFCEYPDRVAKMKE 274

Query: 69  INSE 72
              E
Sbjct: 275 REKE 278



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C    CV VC  D  +       +  ++C+ C  C   CP   I
Sbjct: 144 CGGGTCVSVCEFDAIHMVNGVAQVDKEKCVACMKCINICPKGII 187


>gi|257068147|ref|YP_003154402.1| formate dehydrogenase beta subunit [Brachybacterium faecium DSM
           4810]
 gi|256558965|gb|ACU84812.1| formate dehydrogenase beta subunit [Brachybacterium faecium DSM
           4810]
          Length = 333

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C +  C++VCP    +  E+  + +  D C  CG C   CP   I+   +  + 
Sbjct: 138 SDVCKHCTNAGCLDVCPTGAIFRSEHGSVVVQEDVCNGCGTCVSACPFGVIERRDDGTVS 197

Query: 65  LW 66
            +
Sbjct: 198 PY 199


>gi|86159053|ref|YP_465838.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775564|gb|ABC82401.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 491

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C+ C+   C   CP        N +  +    CI CG C   CP  A   D
Sbjct: 60  CMQCEAHPCTVDCPTGATSVDANGVVGVDAGVCIGCGNCVAACPYGARHVD 110



 Score = 35.7 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 2/30 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           CI C   +CV  CP    +       +   
Sbjct: 92  CIGC--GNCVAACPYGARHVDPVKNVVEKC 119


>gi|15678797|ref|NP_275914.1| hypothetical protein MTH772 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621863|gb|AAB85275.1| conserved protein (contains ferredoxin domain) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 375

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    CVE CPV+    G          CI+C  C   CP  A   D
Sbjct: 307 IDPERCRNCN--VCVESCPVEALKAGAVIPEFDYSRCINCLCCMEVCPHAAFYQD 359


>gi|127510991|ref|YP_001092188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636286|gb|ABO21929.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 558

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 4   VVTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V ++ C   ++       C+  CP D     ++ + I P  C   G C   CP  AI  D
Sbjct: 185 VNSDICAHHRNGIDGCSRCLNFCPADAIASVDHKIEIDPYLCHGAGSCTNACPTGAISYD 244

Query: 59  TEPGLELWLKINS 71
                 L   +N 
Sbjct: 245 LPTPQALHSYLNK 257



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+NC LC    CV  CP     +G     L      C+ CG+CE  CP   I
Sbjct: 423 VNTDNCTLCL--SCVSTCPTQALTDGGEKPALYFVEQACVQCGLCESACPEKVI 474


>gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23]
 gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23]
          Length = 635

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 579 TYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 635

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 579 TYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|326403775|ref|YP_004283857.1| respiratory nitrate reductase beta subunit [Acidiphilium multivorum
           AIU301]
 gi|325050637|dbj|BAJ80975.1| respiratory nitrate reductase beta subunit [Acidiphilium multivorum
           AIU301]
          Length = 508

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGAIYKRDEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|257062986|ref|YP_003142658.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790639|gb|ACV21309.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           T +C  C    C + CP    ++ E+ L +   D+CI C  C   CP  
Sbjct: 64  TVSCQHCDDPACAKACPTGATHKREDGLVVQDYDKCIGCRNCMIACPYT 112


>gi|167750547|ref|ZP_02422674.1| hypothetical protein EUBSIR_01523 [Eubacterium siraeum DSM 15702]
 gi|167656473|gb|EDS00603.1| hypothetical protein EUBSIR_01523 [Eubacterium siraeum DSM 15702]
          Length = 495

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           Y VTE C  C    C +VC +      E+    I   +C++CG C   CP  AI
Sbjct: 101 YDVTEACRGCIAHRCEDVCRMGAITFDEHQKAHIDKSKCVNCGQCAKVCPYGAI 154



 Score = 41.1 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 22/74 (29%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--------------------LAIHPDECI 41
            ++    C+ C    C +VCP     E +                        I  D+CI
Sbjct: 132 AHIDKSKCVNC--GQCAKVCPYGAILEFKRPCERACKIGAISRATDTSSAAAHIDNDKCI 189

Query: 42  DCGVCEPECPVDAI 55
            CG C   CP  AI
Sbjct: 190 SCGACVYTCPFGAI 203



 Score = 34.2 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP 37
            ++  + CI C    CV  CP     +    + I  
Sbjct: 181 AHIDNDKCISC--GACVYTCPFGAISDKSYIVDIIE 214


>gi|126460114|ref|YP_001056392.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249835|gb|ABO08926.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 229

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            ++  C  C++T C  VCP    Y+ E  +  +  + CI CG C   CP  +      P 
Sbjct: 62  FISSLCYHCENTPCQRVCPTGATYKTEEGVVLVDKELCIGCGYCIVACPYGSRYR---PE 118

Query: 63  LELWLK 68
              W +
Sbjct: 119 PHEWRE 124


>gi|83590549|ref|YP_430558.1| sigma-54 dependent trancsriptional regulator [Moorella
          thermoacetica ATCC 39073]
 gi|83573463|gb|ABC20015.1| sigma54 specific transcriptional regulator, Fis family [Moorella
          thermoacetica ATCC 39073]
          Length = 748

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGL 63
          +T  C +C    C+  CPV      +    + P+ CI CG C   C   A   + E   +
Sbjct: 8  ITGKCRMCY--ACIRNCPVKAIKVVDGQARVVPELCIACGHCVQVCAQGAKLVEREIDKV 65

Query: 64 ELWLK 68
          E +L 
Sbjct: 66 EEFLA 70


>gi|320354301|ref|YP_004195640.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122803|gb|ADW18349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 251

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV VCP    Y+ +    + +   +CI C  C   CP +A   + E
Sbjct: 124 CNQCNEPPCVRVCPTVATYKDKTTGIVVMDSKKCIGCKTCMAACPYNARYFNEE 177


>gi|307595560|ref|YP_003901877.1| nitrate reductase subunit beta [Vulcanisaeta distributa DSM 14429]
 gi|307550761|gb|ADN50826.1| nitrate reductase, beta subunit [Vulcanisaeta distributa DSM 14429]
          Length = 507

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +    C     C   CP   +  + +     
Sbjct: 180 CNHCLNAPCVAACPSGAIYKREEDGIVLVDQGRCRGWRFCVSACPYKKVYFNWQTHKAE 238


>gi|295106701|emb|CBL04244.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 202

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI---KPDT 59
           +T +C  C++  C +VCPV   Y+      +    D+CI C +C   CP   +     + 
Sbjct: 56  ITVSCQHCENPACAKVCPVGATYKDPETGVVRQDYDKCIGCRMCMSACPYTGVRSFNWEE 115

Query: 60  EPGLELW 66
                 +
Sbjct: 116 PRYPMDF 122


>gi|291530234|emb|CBK95819.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           siraeum 70/3]
 gi|291557046|emb|CBL34163.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           siraeum V10Sc8a]
          Length = 495

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           Y VTE C  C    C +VC +      E+    I   +C++CG C   CP  AI
Sbjct: 101 YDVTEACRGCIAHRCEDVCRMGAITFDEHQKAHIDKSKCVNCGQCAKVCPYGAI 154



 Score = 41.1 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 22/74 (29%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--------------------LAIHPDECI 41
            ++    C+ C    C +VCP     E +                        I  D+CI
Sbjct: 132 AHIDKSKCVNC--GQCAKVCPYGAILEFKRPCERACKIGAISRATDTSSAAAHIDNDKCI 189

Query: 42  DCGVCEPECPVDAI 55
            CG C   CP  AI
Sbjct: 190 SCGACVYTCPFGAI 203



 Score = 34.2 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP 37
            ++  + CI C    CV  CP     +    + I  
Sbjct: 181 AHIDNDKCISC--GACVYTCPFGAISDKSYIVDIIE 214


>gi|291458640|ref|ZP_06598030.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291419173|gb|EFE92892.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 56

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    EGE+   +  D CIDCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSC--GACASACPVQAISEGESKYVVDADSCIDCGACEEVCPTGAITAE 56


>gi|227114814|ref|ZP_03828470.1| putative anaerobic reductase chain B (DMSO reductase iron-sulfur
           subunit) [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 208

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y ++  C  C    CV  CP    ++   +  + +  + C+ C  CE  CP  A + D
Sbjct: 59  SYYLSIACNHCDDPTCVAGCPTGAMHKRKEDGLVLVDENVCVGCRYCEMRCPYGAPQFD 117


>gi|90411830|ref|ZP_01219839.1| putative dimethyl sulfoxide reductase chain B protein
           [Photobacterium profundum 3TCK]
 gi|90327392|gb|EAS43756.1| putative dimethyl sulfoxide reductase chain B protein
           [Photobacterium profundum 3TCK]
          Length = 205

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C    CV  CP    ++   +  + ++ + C+ C  CE  CP  A + D E
Sbjct: 60  YYLSISCNHCTEPACVSGCPTGAMHKRKEDGLVVVNQETCVGCRYCEMRCPYGAPQYDAE 119


>gi|308047958|ref|YP_003911524.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307630148|gb|ADN74450.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 225

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y  +  C  C    CV+ CP    ++ E    + +    CI C  C   CP DA + D
Sbjct: 78  AYYASLGCNHCSEPVCVKTCPTGAMHKREQDGLVLVDESLCIGCQSCAQACPYDAPQID 136


>gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 635

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 579 TYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|258545781|ref|ZP_05706015.1| electron transport complex, RnfABCDGE type, B subunit
           [Cardiobacterium hominis ATCC 15826]
 gi|258518971|gb|EEV87830.1| electron transport complex, RnfABCDGE type, B subunit
           [Cardiobacterium hominis ATCC 15826]
          Length = 186

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +++ + CI C  T C++ CPVD           I  DEC  C +C   CPV+ I     
Sbjct: 113 AFIIEDWCIGC--TKCIKACPVDAILGSNQKMHTIISDECTGCRLCVDPCPVNCIIMKPR 170

Query: 61  PGLELW 66
                W
Sbjct: 171 DQKWNW 176


>gi|116747835|ref|YP_844522.1| indolepyruvate ferredoxin oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696899|gb|ABK16087.1| Indolepyruvate ferredoxin oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 616

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 5   VTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V E C  C    CV+   CP       +  + I    C  CGVC   CP  A++  +E  
Sbjct: 559 VNEKCKGCDF--CVKQFECPALRPRGEKEPIVIDDSLCSGCGVCVRVCPHGALEAVSEGH 616


>gi|52549383|gb|AAU83232.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27A8]
          Length = 642

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E C  C    C E+C VD          I  D+C+ CG C   CP +A   + E G 
Sbjct: 516 IDNEKCNGC--GRCAELCRVDAISIVLGKAVIDKDKCVTCGWCIRGCPSEA-AIEKERGY 572

Query: 64  ELWLKIN 70
            +W+  N
Sbjct: 573 AMWIGAN 579


>gi|167037871|ref|YP_001665449.1| Fe-S cluster domain-containing protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320116288|ref|YP_004186447.1| Fe-S cluster domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166856705|gb|ABY95113.1| Fe-S cluster domain protein [Thermoanaerobacter pseudethanolicus
          ATCC 33223]
 gi|319929379|gb|ADV80064.1| Fe-S cluster domain protein [Thermoanaerobacter brockii subsp.
          finnii Ako-1]
          Length = 435

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 1  MTYV-----VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y        + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 1  MSYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|255626927|gb|ACU13808.1| unknown [Glycine max]
          Length = 222

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 120 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N E+AT+     +  K++ L +  + +  
Sbjct: 178 VEGP----------NFEFATETHDELLYDKEKLLENGDRWETE 210


>gi|154498692|ref|ZP_02037070.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC
          29799]
 gi|150272431|gb|EDM99625.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC
          29799]
          Length = 73

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +C+ C    C   CPV    +G+    I  D CIDCG C   CPV AI
Sbjct: 18 MAYVIGNDCVSC--GSCEGACPVSAISQGDEHYVIDADTCIDCGTCAETCPVGAI 70


>gi|148260580|ref|YP_001234707.1| nitrate reductase, beta subunit [Acidiphilium cryptum JF-5]
 gi|146402261|gb|ABQ30788.1| respiratory nitrate reductase beta subunit [Acidiphilium cryptum
           JF-5]
          Length = 508

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGAIYKRDEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|303257094|ref|ZP_07343108.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|331000953|ref|ZP_08324590.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|302860585|gb|EFL83662.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|329569912|gb|EGG51669.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 211

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C  C +  C+ VCP    Y+G +    +   +CI CG C   CP  A K +       W
Sbjct: 55  SCQHCDNPACLPVCPAKAIYKGPHGEVLVDQSKCISCGACAMACPYGAPKFNRSGKTSYW 114


>gi|254509840|ref|ZP_05121907.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533551|gb|EEE36539.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 238

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+  
Sbjct: 70  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWSCPYGARELDQAEGVMK 129


>gi|167040768|ref|YP_001663753.1| Fe-S cluster domain-containing protein [Thermoanaerobacter sp.
          X514]
 gi|256750978|ref|ZP_05491861.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus
          CCSD1]
 gi|300914806|ref|ZP_07132122.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X561]
 gi|307723960|ref|YP_003903711.1| Fe-S cluster domain-containing protein [Thermoanaerobacter sp.
          X513]
 gi|166855008|gb|ABY93417.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X514]
 gi|256750088|gb|EEU63109.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus
          CCSD1]
 gi|300889741|gb|EFK84887.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X561]
 gi|307581021|gb|ADN54420.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X513]
          Length = 435

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 1  MTYV-----VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y        + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 1  MSYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVRDGKAMIINERCIDCGECIRVCPYHA 57


>gi|115360454|ref|YP_777591.1| nitrate reductase, beta subunit [Burkholderia ambifaria AMMD]
 gi|115285782|gb|ABI91257.1| respiratory nitrate reductase beta subunit [Burkholderia ambifaria
           AMMD]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|284048866|ref|YP_003399205.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953087|gb|ADB47890.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 504

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++T+ C  C    C+  CP       +    I  D CI+CG C+  CP  A+
Sbjct: 105 YMITDVCRRCLTHRCMNGCPKKAISVYQGRAHIDYDMCIECGNCKRACPYGAV 157



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            ++  + CI C +                C   C V   + G+N    I  + C++CG C
Sbjct: 135 AHIDYDMCIECGNCKRACPYGAVVEIARPCENACKVHALHTGKNKKAEIDKNICVECGAC 194

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 195 RGACPFGAI 203


>gi|283832972|ref|ZP_06352713.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291071579|gb|EFE09688.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 210

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 72  AYTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQMNE 131

Query: 60  EPGLE 64
           E G  
Sbjct: 132 EAGQM 136


>gi|242281233|ref|YP_002993362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124127|gb|ACS81823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 367

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++  E C  C    C+  C        ++   I   +C  CG C   C   AI  D + 
Sbjct: 187 PHLHPEKCTGC--GVCITECAAKALDLDDDGKIIMGGKCTGCGRCFLSCRYGAISIDWKS 244

Query: 62  GLELWLKINSEY 73
            +E++ K   EY
Sbjct: 245 DVEVFTKRLIEY 256


>gi|119871780|ref|YP_929787.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673188|gb|ABL87444.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 232

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   C+EVCP    Y+ +  +  I  D+CI C  C   CP   
Sbjct: 69  CNHCEKAPCLEVCPTQATYKTKEGIVLIDKDKCIGCRYCIMACPYGM 115


>gi|115389268|ref|XP_001212139.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
 gi|114194535|gb|EAU36235.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
          Length = 226

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 124 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 181

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 182 VE----------TSNAEYATETREELLYNKEKLLANGDKWEPE 214


>gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Moorella thermoacetica ATCC 39073]
          Length = 619

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +YV+    C  C    C  VCPV     G+     I P  CI CG C  +C   AI  +
Sbjct: 563 SYVIDAGKCTGC--GACSRVCPVGAISGGKKEAHQIDPAACIKCGSCYEKCRFGAITRE 619



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     E  +   I   +C  CG C   CPV AI    +   +
Sbjct: 553 CPAHVCQELLS-YVIDAGKCTGCGACSRVCPVGAISGGKKEAHQ 595


>gi|219667265|ref|YP_002457700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537525|gb|ACL19264.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 193

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C  C++  CVEVCPV   Y+ E+ +  +   +CI CG C   CP +A   
Sbjct: 64  CNHCENAPCVEVCPVKASYKREDGMVLLDKKKCIGCGYCVASCPYNARYM 113


>gi|304412801|ref|ZP_07394403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307465|ref|ZP_07587200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304348881|gb|EFM13297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910253|gb|EFN40686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 553

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + I P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKVVSRFREQAQTAPVI 267



 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|293396628|ref|ZP_06640904.1| respiratory nitrate reductase, beta subunit [Serratia odorifera DSM
           4582]
 gi|291420892|gb|EFE94145.1| respiratory nitrate reductase, beta subunit [Serratia odorifera DSM
           4582]
          Length = 512

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVSSCPSGAIYKREEDGIVLIDEDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|256830133|ref|YP_003158861.1| glycyl-radical enzyme activating family protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579309|gb|ACU90445.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 306

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C+ C   +CVE CP      G + +  + D C  CGVC   CP  A     E    
Sbjct: 56  VPDKCVGC--GECVEACPQGALSPGPDGMLRNQDACTACGVCAEVCPALAH----EAVGR 109

Query: 65  LW--LKINSEYATQWP 78
            W  L++ +E   + P
Sbjct: 110 KWTVLEVMAEIEKETP 125


>gi|255322780|ref|ZP_05363922.1| electron transport protein HydN [Campylobacter showae RM3277]
 gi|255300122|gb|EET79397.1| electron transport protein HydN [Campylobacter showae RM3277]
          Length = 248

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFDDNCIELHEEICIGCKLCTIACPYGAISSSAE 104


>gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 626

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M+Y +  + C  C    C  +CP      E +    I   +CI CG C   C   AI+
Sbjct: 569 MSYEIDKDKCKGCSK--CARMCPAGAITGEIKKPYTIDQSKCIKCGACMDGCAFKAIQ 624


>gi|163794797|ref|ZP_02188767.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159180070|gb|EDP64595.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 197

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFYE    + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYESNEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|91201122|emb|CAJ74181.1| conserved hypothetical iron sulfur protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ + C  C    C + CPV     GE +  I P  CI CG C   C   A+K   +   
Sbjct: 191 ILKKKCTTC--GVCGKWCPVGAIKIGEEYAIIDPQICIGCGECLAVCQFQAVKIAWDENA 248

Query: 64  ELWLKINSEYATQWPNITTKKE 85
              + +  + A     +   KE
Sbjct: 249 ---VNLQKKVAEHCLALLKGKE 267


>gi|87311263|ref|ZP_01093385.1| molybdopterin oxidoreductase, iron sulfur subunit [Blastopirellula
           marina DSM 3645]
 gi|87286003|gb|EAQ77915.1| molybdopterin oxidoreductase, iron sulfur subunit [Blastopirellula
           marina DSM 3645]
          Length = 536

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           VT  C  C    C++ CPV  + +      +    D+CI C  C   CP D
Sbjct: 115 VTTACHHCADPGCLKGCPVKAYDKDPVTGIVVHLDDQCIGCKYCTMMCPYD 165


>gi|326392042|ref|ZP_08213536.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus JW
          200]
 gi|325991921|gb|EGD50419.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus JW
          200]
          Length = 437

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 1  MTYV-----VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y        + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 1  MSYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|317489727|ref|ZP_07948230.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830405|ref|ZP_08163862.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|316911193|gb|EFV32799.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487872|gb|EGC90310.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 209

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C   +CV+VCP    ++ E+    +   +CI C  C   CP +    + + 
Sbjct: 58  YFLPVQCQHCADPECVKVCPTGASHKLEDGTVQVDKSKCIGCQFCAMACPYNVRYLNEQE 117

Query: 62  G 62
            
Sbjct: 118 R 118


>gi|218706393|ref|YP_002413912.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UMN026]
 gi|218433490|emb|CAR14393.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli UMN026]
          Length = 639

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 596

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C  C    C   CPV   Y+ E+    I   +C  CG+C   CP  AIK +
Sbjct: 543 VIREECRKCS--ICFRNCPVGAIYKDEDGTYVIDQSKCTKCGICFQVCPFSAIKKE 596


>gi|153002602|ref|YP_001368283.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151367220|gb|ABS10220.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 553

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + I P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKVVSRFREQAQTAPVI 267



 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|311697010|gb|ADP99883.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [marine
          bacterium HP15]
          Length = 160

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
          ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 14 ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 64


>gi|300936167|ref|ZP_07151103.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           21-1]
 gi|300458624|gb|EFK22117.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           21-1]
          Length = 644

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|295106689|emb|CBL04232.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 171

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +VV   C+ C++  C+  C V    Y+ ++ +  I  ++CI C  C   CP  A      
Sbjct: 19  HVVPMLCMHCENAPCIAACAVEGATYKRDDGIVMIDKEKCIGCKACITACPYAARYYVES 78

Query: 61  PGLELWLKINSEYATQWPNITT 82
            G     ++N   A  +P +  
Sbjct: 79  EGGYFGSELNEYEALMYPTMPK 100


>gi|293406385|ref|ZP_06650311.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1412]
 gi|298382121|ref|ZP_06991718.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1302]
 gi|300896219|ref|ZP_07114768.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           198-1]
 gi|291426391|gb|EFE99423.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1412]
 gi|298277261|gb|EFI18777.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1302]
 gi|300359953|gb|EFJ75823.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           198-1]
          Length = 644

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|167037823|ref|YP_001665401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040723|ref|YP_001663708.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter sp. X514]
 gi|256752156|ref|ZP_05493022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914762|ref|ZP_07132078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X561]
 gi|307724004|ref|YP_003903755.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Thermoanaerobacter sp. X513]
 gi|320116240|ref|YP_004186399.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854963|gb|ABY93372.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X514]
 gi|166856657|gb|ABY95065.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256748970|gb|EEU62008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889697|gb|EFK84843.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X561]
 gi|307581065|gb|ADN54464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter sp. X513]
 gi|319929331|gb|ADV80016.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 56

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  AIK +
Sbjct: 1  MAHYITDECISC--GACTAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAIKAE 56


>gi|254229650|ref|ZP_04923061.1| Fe-S-cluster-containing hydrogenase components 1 [Vibrio sp. Ex25]
 gi|262393807|ref|YP_003285661.1| tetrathionate reductase subunit B [Vibrio sp. Ex25]
 gi|151937849|gb|EDN56696.1| Fe-S-cluster-containing hydrogenase components 1 [Vibrio sp. Ex25]
 gi|262337401|gb|ACY51196.1| tetrathionate reductase subunit B [Vibrio sp. Ex25]
          Length = 255

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++   C  C++  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 102 AFMLPRLCNHCENPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161


>gi|301027422|ref|ZP_07190759.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           69-1]
 gi|300394930|gb|EFJ78468.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           69-1]
          Length = 644

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|218778023|ref|YP_002429341.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759407|gb|ACL01873.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
           alkenivorans AK-01]
          Length = 317

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   CI C+   CVEVCP +     +  + I    C  CG C  ECP  A++   E  
Sbjct: 50  IGSRCIGCR--SCVEVCPHNALELTQEGMQIDRGLCEGCGRCADECPSTAMEMLGEDR 105


>gi|150020688|ref|YP_001306042.1| thiamine pyrophosphate binding domain-containing protein
           [Thermosipho melanesiensis BI429]
 gi|149793209|gb|ABR30657.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Thermosipho melanesiensis BI429]
          Length = 642

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 19/57 (33%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  CK       CP   +        I P  C  CG C   CP  A +   E
Sbjct: 584 VNPEKCTGCKVCITTFGCPAIFWDSENKKAKIDPTMCWGCGSCAQICPFGAFELVRE 640


>gi|90578228|ref|ZP_01234039.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14]
 gi|90441314|gb|EAS66494.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14]
          Length = 204

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C  VCPV    +  + + ++   C+ C +C   CP  AI  D
Sbjct: 51  CRHCEDAPCAAVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFD 100


>gi|322835428|ref|YP_004215454.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
 gi|321170629|gb|ADW76327.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
          Length = 206

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  CK   C + CP    ++  G+  + ++ D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCKDPVCTKNCPTTAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGA 125


>gi|319794274|ref|YP_004155914.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315596737|gb|ADU37803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 206

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV CFY  +  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVQCFYRTDEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|302342956|ref|YP_003807485.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfarculus baarsii DSM 2075]
 gi|301639569|gb|ADK84891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfarculus baarsii DSM 2075]
          Length = 550

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C++ CP       +    I  D C+ CG C   CP DAI
Sbjct: 17 ILPEKCTGCVL--CMKACPNQAIRVHDGKAVIRFDHCVACGACYRVCPADAI 66


>gi|242398139|ref|YP_002993563.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sibiricus MM 739]
 gi|242264532|gb|ACS89214.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sibiricus MM 739]
          Length = 646

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV  + C  C+       CP   + E +    + P  C  CG C   CP  A +P  E  
Sbjct: 586 YVNEDKCTGCRICINAYGCPAIYWDEEKKQARVEPTMCWGCGGCAQVCPFGAFEPMKEGE 645

Query: 63  L 63
            
Sbjct: 646 Q 646


>gi|121595757|ref|YP_987653.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222111960|ref|YP_002554224.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120607837|gb|ABM43577.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221731404|gb|ACM34224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 206

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  E  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTEEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
 gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
          Length = 586

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           TY +  E C+ C  T C + CPV+           I  ++CI CG C   C  DA+  D
Sbjct: 530 TYSIDEEKCVGC--TRCAKNCPVEAISGAPKKVHVIDQEKCIKCGKCASVCKFDAVTVD 586


>gi|317052646|ref|YP_004113762.1| hypothetical protein Selin_2493 [Desulfurispirillum indicum S5]
 gi|316947730|gb|ADU67206.1| hypothetical protein Selin_2493 [Desulfurispirillum indicum S5]
          Length = 263

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV VCP    +  E+ +  +    C  CG C   CP D     
Sbjct: 107 CNHCAEPSCVRVCPTGATFSREDGVVMVDDKVCWGCGYCINACPYDKRYFH 157


>gi|255013975|ref|ZP_05286101.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7]
          Length = 301

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LEL 65
            CI C    CV+VCP       E  +      C  CG C   CP  A++         E+
Sbjct: 51  KCIGC--GACVDVCPTGALTLTEAGIVTDRSLCRTCGRCAEVCPTLAMEMSGREYSIDEV 108

Query: 66  WLKINSE 72
             +I  E
Sbjct: 109 MREIEKE 115


>gi|89897363|ref|YP_520850.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336811|dbj|BAE86406.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 193

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CVEVCPV   Y+ E+ +  +   +CI CG C   CP +A   
Sbjct: 64  CNHCDNAPCVEVCPVKASYKREDGMVLLDKKKCIGCGYCVASCPYNARYM 113


>gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
 gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
          Length = 599

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C    C + CP D     +     I   +C+ CG C   CP +AI
Sbjct: 544 YVIDEEKCKGC--GICAKKCPGDAITGEKKKPHVIDAAKCVKCGACIEACPFNAI 596



 Score = 34.2 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + CP            I  ++C  CG+C  +CP DAI  +
Sbjct: 530 EKRCPAGVCR-NLLNYVIDEEKCKGCGICAKKCPGDAITGE 569


>gi|239817031|ref|YP_002945941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239803608|gb|ACS20675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 207

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV CFY  E  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVQCFYRTEEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|114762113|ref|ZP_01441581.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114545137|gb|EAU48140.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 249

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    CV VCP    Y+   +  + +  + CI CG+C   CP  A + D
Sbjct: 81  SCLHCDDAPCVTVCPTGASYKRVEDGIVLVEEEACIGCGLCAWACPYGARELD 133


>gi|87312333|ref|ZP_01094428.1| ferredoxin [Blastopirellula marina DSM 3645]
 gi|87284955|gb|EAQ76894.1| ferredoxin [Blastopirellula marina DSM 3645]
          Length = 71

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNI 80
          ++CFYEG+  L IHP+ECIDC  C PECPV+AI  +       + ++++N+E A Q   I
Sbjct: 1  MECFYEGDKILYIHPEECIDCEACVPECPVEAIFHEDNVPEEWQGFIELNAEMAPQCEVI 60

Query: 81 TTKKESLPS 89
          T KKE L  
Sbjct: 61 TEKKEPLVD 69


>gi|171186292|ref|YP_001795211.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170935504|gb|ACB40765.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 232

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+ T C+EVCP    Y+ +  +  I  D+CI C  C   CP   
Sbjct: 69  CNHCEKTPCLEVCPTQATYKTKEGIVLIDKDKCIGCRYCIMACPYGM 115


>gi|46198462|ref|YP_004129.1| nrfC protein [Thermus thermophilus HB27]
 gi|190016225|pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
 gi|190016228|pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
 gi|190016231|pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (Uq1)
 gi|190016234|pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (Uq1)
 gi|190016237|pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
           Pentachlorophenol (Pcp)
 gi|190016240|pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
           Pentachlorophenol (Pcp)
 gi|190016243|pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
 gi|190016246|pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
 gi|46196084|gb|AAS80502.1| nrfC protein [Thermus thermophilus HB27]
          Length = 195

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            E C+ C++  CV VCP    Y+ ++ L  + P +CI CG C   CP DA
Sbjct: 55  PEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDA 104


>gi|28898786|ref|NP_798391.1| tetrathionate reductase subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364141|ref|ZP_05776847.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus K5030]
 gi|260877224|ref|ZP_05889579.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           AN-5034]
 gi|260897830|ref|ZP_05906326.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           Peru-466]
 gi|28807005|dbj|BAC60275.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087620|gb|EFO37315.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           Peru-466]
 gi|308090343|gb|EFO40038.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           AN-5034]
 gi|308115222|gb|EFO52762.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus K5030]
          Length = 255

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161


>gi|6226880|sp|P80269|NDUS8_SOLTU RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|668985|emb|CAA59062.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 229

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 185 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 217


>gi|326388440|ref|ZP_08210036.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207172|gb|EGD57993.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 470

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +    CI C    C+  CP  D           I P  CI  G C   CP DAI
Sbjct: 84  IDPARCIGC--GACIRACPETDALGLIGRTAVLIEPWACIGHGTCRDACPTDAI 135


>gi|323978822|gb|EGB73903.1| glutamate synthase [Escherichia coli TW10509]
          Length = 641

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 108



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 85  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 142

Query: 62  GLEL 65
           GL+ 
Sbjct: 143 GLQQ 146


>gi|294496384|ref|YP_003542877.1| hypothetical protein Mmah_1737 [Methanohalophilus mahii DSM 5219]
 gi|292667383|gb|ADE37232.1| protein of unknown function DUF362 [Methanohalophilus mahii DSM
           5219]
          Length = 369

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + C  C    CV  CP +  Y       I    CI C  C   CP  A+K       
Sbjct: 309 IDADKCTAC--GACVRNCPAEAIYMDNGHAVIDAGICILCYCCRELCPAAAVKSRKSLLA 366

Query: 64  ELW 66
            ++
Sbjct: 367 RMF 369


>gi|283832873|ref|ZP_06352614.1| nitrate reductase, beta subunit [Citrobacter youngae ATCC 29220]
 gi|291071473|gb|EFE09582.1| nitrate reductase, beta subunit [Citrobacter youngae ATCC 29220]
          Length = 512

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|217075100|gb|ACJ85910.1| unknown [Medicago truncatula]
          Length = 222

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 120 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  + +  
Sbjct: 178 VEGP----------NFEFSTETHEELLYDKEKLLENGDRWETE 210


>gi|158319260|ref|YP_001511767.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158139459|gb|ABW17771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 186

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           V + C  C  T CV  CPV    + E+ +  +  ++CI C  C   CP  A   + E
Sbjct: 55  VPQLCNHCDETPCVSACPVKATDKSEDGIVFVDREKCIGCFACVGACPYGARIQEEE 111


>gi|77416915|gb|ABA81853.1| NADH:ubiquinone oxidoreductase-like [Solanum tuberosum]
          Length = 229

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 185 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 217


>gi|327251648|gb|EGE63334.1| hypothetical protein ECSTEC7V_3499 [Escherichia coli STEC_7v]
          Length = 644

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|323966687|gb|EGB62119.1| glutamate synthase [Escherichia coli M863]
          Length = 639

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|304314163|ref|YP_003849310.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302587622|gb|ADL57997.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 366

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV   C  C   +CV  CPVD     +  + I  D CI C  C   CP      D E  +
Sbjct: 189 VVRGECTEC--GECVSECPVDAMTLHD-GVMIEYDRCIACMNCLDTCPRGVFDLDWERDI 245

Query: 64  ELWLKINSEYA 74
             +++   EYA
Sbjct: 246 PEFIERMMEYA 256


>gi|172065729|ref|YP_001816441.1| nitrate reductase, beta subunit [Burkholderia ambifaria MC40-6]
 gi|171997971|gb|ACB68888.1| nitrate reductase, beta subunit [Burkholderia ambifaria MC40-6]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|126176318|ref|YP_001052467.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999523|gb|ABN63598.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 553

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + I P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKVVSRFREQAQTAPVI 267



 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|226288083|gb|EEH43596.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 229

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 185 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 217


>gi|22125415|ref|NP_668838.1| anaerobic dimethyl sulfoxide reductase subunit B [Yersinia pestis
           KIM 10]
 gi|45442368|ref|NP_993907.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51597008|ref|YP_071199.1| dimethyl sulfoxide reductase chain B protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808149|ref|YP_652065.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Antiqua]
 gi|108811579|ref|YP_647346.1| dimethyl sulfoxide reductase chain B protein [Yersinia pestis
           Nepal516]
 gi|145599349|ref|YP_001163425.1| dimethyl sulfoxide reductase chain B protein [Yersinia pestis
           Pestoides F]
 gi|149365169|ref|ZP_01887204.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis CA88-4125]
 gi|153949240|ref|YP_001400322.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418735|ref|YP_001607117.1| putative anaerobic dimethyl sulfoxide reductase subunit B [Yersinia
           pestis Angola]
 gi|165926845|ref|ZP_02222677.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939206|ref|ZP_02227756.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011245|ref|ZP_02232143.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212433|ref|ZP_02238468.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399313|ref|ZP_02304837.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421332|ref|ZP_02313085.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424462|ref|ZP_02316215.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468500|ref|ZP_02333204.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis FV-1]
 gi|170023696|ref|YP_001720201.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           YPIII]
 gi|186896091|ref|YP_001873203.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930015|ref|YP_002347890.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis CO92]
 gi|229838554|ref|ZP_04458713.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229895620|ref|ZP_04510791.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Pestoides A]
 gi|229899120|ref|ZP_04514263.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901853|ref|ZP_04516974.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Nepal516]
 gi|294504721|ref|YP_003568783.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Z176003]
 gi|21958302|gb|AAM85089.1|AE013754_11 anaerobic dimethyl sulfoxide reductase subunit B [Yersinia pestis
           KIM 10]
 gi|45437232|gb|AAS62784.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51590290|emb|CAH21927.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775227|gb|ABG17746.1| dimethyl sulfoxide reductase chain B protein [Yersinia pestis
           Nepal516]
 gi|108780062|gb|ABG14120.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Antiqua]
 gi|115348626|emb|CAL21570.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis CO92]
 gi|145211045|gb|ABP40452.1| dimethyl sulfoxide reductase chain B protein [Yersinia pestis
           Pestoides F]
 gi|149291582|gb|EDM41656.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis CA88-4125]
 gi|152960735|gb|ABS48196.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pseudotuberculosis IP 31758]
 gi|162351550|gb|ABX85498.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis Angola]
 gi|165912806|gb|EDR31433.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921196|gb|EDR38420.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989923|gb|EDR42224.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206364|gb|EDR50844.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960821|gb|EDR56842.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051817|gb|EDR63225.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056344|gb|EDR66113.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750230|gb|ACA67748.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           YPIII]
 gi|186699117|gb|ACC89746.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680749|gb|EEO76844.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Nepal516]
 gi|229687522|gb|EEO79595.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694920|gb|EEO84967.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229701426|gb|EEO89454.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Pestoides A]
 gi|262362783|gb|ACY59504.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis D106004]
 gi|262366708|gb|ACY63265.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis D182038]
 gi|294355180|gb|ADE65521.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Z176003]
 gi|320014482|gb|ADV98053.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 205

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y ++  C  C    CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D
Sbjct: 59  SYYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFD 117


>gi|311279367|ref|YP_003941598.1| nitrate reductase, beta subunit [Enterobacter cloacae SCF1]
 gi|308748562|gb|ADO48314.1| nitrate reductase, beta subunit [Enterobacter cloacae SCF1]
          Length = 512

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|307266701|ref|ZP_07548229.1| Fe-S cluster domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918303|gb|EFN48549.1| Fe-S cluster domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 435

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 1  MTYV-----VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y        + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 1  MSYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|284922835|emb|CBG35924.1| putative oxidoreductase [Escherichia coli 042]
          Length = 639

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|260901541|ref|ZP_05909936.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ4037]
 gi|308110900|gb|EFO48440.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ4037]
          Length = 255

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161


>gi|268589748|ref|ZP_06123969.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291314901|gb|EFE55354.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 204

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++ +C  C +  CV  CP    ++ E   L +    C+ C  CE  CP  A + D +
Sbjct: 59  SYYLSISCNHCSNPTCVAGCPTGAMHKREQDGLVVDQTICVGCRYCELRCPYGAPQYDEK 118


>gi|261378107|ref|ZP_05982680.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           cinerea ATCC 14685]
 gi|269145561|gb|EEZ71979.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           cinerea ATCC 14685]
          Length = 279

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C+  CP D      +    +  DEC  CG+C   CPVD I     
Sbjct: 72  AWIDESACIGC--TACIRACPTDAIMGASKFMHTVIADECTGCGLCIAPCPVDCIHMQ-- 127

Query: 61  PGLELWLKINSEYA 74
           P  + +L     ++
Sbjct: 128 PVSDTFLPRARRFS 141



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    C+  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCIAPCPVDCIHMQP 128


>gi|213619042|ref|ZP_03372868.1| thiosulfate reductase electron transport protein PhsB [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 182

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 53 SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 99


>gi|331664458|ref|ZP_08365364.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA143]
 gi|331058389|gb|EGI30370.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA143]
          Length = 644

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|324112958|gb|EGC06934.1| glutamate synthase [Escherichia fergusonii B253]
          Length = 636

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          C  C+   C   CP        + + ++  +CI C  C   CP   ++    P     +K
Sbjct: 33 CHHCEDAPCARSCPNGAISHVNDSVQVNQQKCIGCKSCVIACPFGTMQIVLSPVSAERVK 92


>gi|283787036|ref|YP_003366901.1| anaerobic reductase component [Citrobacter rodentium ICC168]
 gi|282950490|emb|CBG90155.1| putative anaerobic reductase component [Citrobacter rodentium
           ICC168]
          Length = 209

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    ++  G+  + ++ D+C+ CG C   CP  A + DT
Sbjct: 71  AYTMSISCNHCADPICTKNCPTTAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMDT 130

Query: 60  EPGLE 64
           + G  
Sbjct: 131 QAGQM 135


>gi|254037930|ref|ZP_04871988.1| aegA [Escherichia sp. 1_1_43]
 gi|226839554|gb|EEH71575.1| aegA [Escherichia sp. 1_1_43]
          Length = 644

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|218701595|ref|YP_002409224.1| putative oxidoreductase [Escherichia coli IAI39]
 gi|218371581|emb|CAR19420.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli IAI39]
          Length = 639

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|153837801|ref|ZP_01990468.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ3810]
 gi|149748822|gb|EDM59661.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ3810]
          Length = 255

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161


>gi|121534183|ref|ZP_01666008.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307286|gb|EAX48203.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 193

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP    YE + F+ I+   CI C VC   CP  AI
Sbjct: 64  CRQCEDAPCAHACPTGAIYEEDRFVKINESNCIGCKVCTMVCPFGAI 110


>gi|325281877|ref|YP_004254419.1| Fe-S cluster domain-containing protein [Odoribacter splanchnicus
          DSM 20712]
 gi|324313686|gb|ADY34239.1| Fe-S cluster domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 568

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y   ENC  C    CV  CPV      +N   I  + CI CG C   CP  A
Sbjct: 7  YTEPENCQDCYK--CVRECPVKAIQIEDNKAYIIEERCIYCGHCTQVCPTGA 56



 Score = 37.3 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           Y++ E CI C    C +VCP       +
Sbjct: 35 AYIIEERCIYC--GHCTQVCPTGAKKIRD 61


>gi|322616235|gb|EFY13149.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322625666|gb|EFY22486.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628559|gb|EFY25347.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633723|gb|EFY30463.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322638468|gb|EFY35163.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640861|gb|EFY37510.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644080|gb|EFY40625.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648229|gb|EFY44692.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652971|gb|EFY49307.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658801|gb|EFY55057.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662772|gb|EFY58979.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668542|gb|EFY64696.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674034|gb|EFY70129.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675395|gb|EFY71470.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680353|gb|EFY76392.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685836|gb|EFY81828.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323191903|gb|EFZ77149.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198142|gb|EFZ83253.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204499|gb|EFZ89504.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205431|gb|EFZ90398.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209689|gb|EFZ94617.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217579|gb|EGA02295.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220737|gb|EGA05180.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323232158|gb|EGA16265.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235792|gb|EGA19872.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323241008|gb|EGA25047.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243258|gb|EGA27277.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249452|gb|EGA33367.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323255411|gb|EGA39178.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263390|gb|EGA46922.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267822|gb|EGA51302.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271402|gb|EGA54826.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 512

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|256544554|ref|ZP_05471927.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
 gi|256399879|gb|EEU13483.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
          Length = 512

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
           +Y + +NCI C    C   CPV C   + +    I  ++CI CG C   CP
Sbjct: 455 SYKIEDNCIGC--GTCKRNCPVGCISGKVKEKHTIDQEKCIKCGTCYNVCP 503


>gi|239908987|ref|YP_002955729.1| putative electron transport protein [Desulfovibrio magneticus RS-1]
 gi|239798854|dbj|BAH77843.1| putative electron transport protein [Desulfovibrio magneticus RS-1]
          Length = 198

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C  C+   C  VCP        + + + P  CI C  C   CPV A+  
Sbjct: 62  ACRHCEAAPCAAVCPTAAVRCDASGVVVEPARCIGCKACLAVCPVGAMAM 111


>gi|170683856|ref|YP_001745039.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           SMS-3-5]
 gi|170521574|gb|ACB19752.1| protein aegA [Escherichia coli SMS-3-5]
          Length = 644

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   C    ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACSFGVVEMVD 111


>gi|119496461|ref|XP_001265004.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413166|gb|EAW23107.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
          Length = 228

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 126 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 183

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 184 VE----------TSNAEYATETREELLYNKEKLLANGDKWEPE 216


>gi|297582957|ref|YP_003698737.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141414|gb|ADH98171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 225

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA-IKPDTEPGL 63
           T  C  C +  C  +CP    Y  E+ +  +  D+CI C  C   CP +A I  + +   
Sbjct: 99  TAQCNHCHNAPCERICPTQATYLNEDGIMVMDHDKCIGCKGCVAACPYNARIWSEAKQTP 158

Query: 64  EL 65
           E 
Sbjct: 159 EK 160


>gi|319764052|ref|YP_004127989.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|330823673|ref|YP_004386976.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|317118613|gb|ADV01102.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|329309045|gb|AEB83460.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
          Length = 206

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  E  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTEEGIVLHDKDVCIGCGYCSYACPFGA 101


>gi|289583190|ref|YP_003481656.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
 gi|289532743|gb|ADD07094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
          Length = 552

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
            C  C    C +VCP    +  +N   +    D CI C  C+  CP      + D     
Sbjct: 201 PCQHCTDAPCEKVCPTTARHTRDNDGLVLTDYDVCIGCRYCQVACPYGVNYFQWDEPDIT 260

Query: 64  ELWLK 68
              ++
Sbjct: 261 TEDIE 265


>gi|218886706|ref|YP_002436027.1| dimethylsulfoxide reductase, chain B [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757660|gb|ACL08559.1| dimethylsulfoxide reductase, chain B [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 205

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           +Y ++ +C  C+   CV+ CP    ++ +N +  + P +C+ C  C   CP  A + 
Sbjct: 60  SYYLSVSCNHCEDPICVQSCPTTAMHQDKNGIVSVDPKKCVGCKYCSWGCPYGAPQY 116


>gi|238789980|ref|ZP_04633759.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
 gi|238721928|gb|EEQ13589.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
          Length = 205

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y ++  C  C    CV  CP    Y+ E    + ++ D C+ C  CE  CP  A + D
Sbjct: 60  YYLSIACNHCSSPTCVTGCPTGAMYKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFD 117


>gi|227873643|ref|ZP_03991880.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Oribacterium sinus F0268]
 gi|227840514|gb|EEJ50907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Oribacterium sinus F0268]
          Length = 56

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +VV++ C+ C    C  VCPV+   EG     + PD CIDCG CE  CP  AI  +
Sbjct: 1  MAHVVSDECVSC--GACAAVCPVEAISEGPTKYVVDPDTCIDCGACEEPCPTGAIAAE 56


>gi|297619129|ref|YP_003707234.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanococcus voltae A3]
 gi|297378106|gb|ADI36261.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanococcus voltae A3]
          Length = 602

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV +E C  CK   C+ + CP   F        I    C+ CG+C   C   AI
Sbjct: 543 YVNSEKCNGCKL--CLRIGCPAISFNNETKKAEIDKSLCVGCGLCVDICKRSAI 594


>gi|160877323|ref|YP_001556639.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|160862845|gb|ABX51379.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|315269528|gb|ADT96381.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 553

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + I P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKVVSRFREQAQTAPVI 267



 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|148261628|ref|YP_001235755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|146403309|gb|ABQ31836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
          Length = 247

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C++  CV VCP    Y+   +  + ++ D CI C +C   CP  A + D   G+  
Sbjct: 83  SCLHCENPLCVTVCPTGASYKRAEDGIVLVNTDICIGCKLCSWACPYGAREFDEHDGVMK 142


>gi|328474655|gb|EGF45460.1| tetrathionate reductase subunit B [Vibrio parahaemolyticus 10329]
          Length = 255

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161


>gi|269966518|ref|ZP_06180601.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 40B]
 gi|269828862|gb|EEZ83113.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 40B]
          Length = 255

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161


>gi|237665790|ref|ZP_04525778.1| dihydroorotate dehydrogenase family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|237658737|gb|EEP56289.1| dihydroorotate dehydrogenase family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 362

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + C  C+   C + CP       +N + I    C  CG+CE  CP  AI  
Sbjct: 307 PLINKDKCTNCRL--CEKACPYFAITSIDNQIKIDTKNCFGCGLCESRCPSKAIYN 360


>gi|161503126|ref|YP_001570238.1| hypothetical protein SARI_01191 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864473|gb|ABX21096.1| hypothetical protein SARI_01191 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|295107498|emb|CBL05041.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 187

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  C +VCPV   +  E    +    D+CI C +C   CP  A   + E  
Sbjct: 46  CQHCANPACAKVCPVGATWRDEKTGIVVQDVDKCIGCRMCMGACPYSARTFNWEEP 101


>gi|270490039|ref|ZP_06207113.1| 4Fe-4S binding domain protein [Yersinia pestis KIM D27]
 gi|270338543|gb|EFA49320.1| 4Fe-4S binding domain protein [Yersinia pestis KIM D27]
          Length = 211

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y ++  C  C    CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D
Sbjct: 65  SYYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFD 123


>gi|242277849|ref|YP_002989978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120743|gb|ACS78439.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 251

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C +  CV+ CP    ++   +  + I    CI CG C P CP DA   + 
Sbjct: 62  CMHCDNPTCVQACPTGATFKDKTDGTVRIDTSLCIGCGNCMPACPYDARFRNE 114


>gi|224437316|ref|ZP_03658288.1| putative formate dehydrogenase iron-sulfur subunit [Helicobacter
           cinaedi CCUG 18818]
          Length = 211

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C +VCPVDCFY   + +   +   CI CG C   CP  A
Sbjct: 66  ISIACMHCADAPCAKVCPVDCFYIRADGIVLHNKKTCIGCGYCLYACPFGA 116


>gi|157145559|ref|YP_001452878.1| hypothetical protein CKO_01302 [Citrobacter koseri ATCC BAA-895]
 gi|157082764|gb|ABV12442.1| hypothetical protein CKO_01302 [Citrobacter koseri ATCC BAA-895]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
 gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
          Length = 596

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +TE C  C    C + CPV+    E +   +I+  +CI CG C  +CP  AI
Sbjct: 542 YQITELCKGC--GLCKKACPVEAISGEIKGRHSINQAKCIKCGACMAKCPFKAI 593


>gi|116750829|ref|YP_847516.1| cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699893|gb|ABK19081.1| Cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 292

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E C  C    C  +C  D   EGE    + P  C  C VC   CP +AI+ +     
Sbjct: 63  IDGERCTGC--GVCASLCRFDAIREGERGYTVDPIRCEGCKVCVAFCPAEAIRFELRHCG 120

Query: 64  ELWL 67
             ++
Sbjct: 121 HWYV 124


>gi|295107943|emb|CBL21896.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus obeum A2-162]
          Length = 294

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C  CK       CP       +  + I   +C  CG C  +CP   I
Sbjct: 169 VDTDICKGCKKCAIEAACPNKAAKVVDGKITIDEAQCRHCGRCVGKCPFHTI 220


>gi|260776502|ref|ZP_05885397.1| NrfC protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607725|gb|EEX33990.1| NrfC protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 229

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    Y+ E    + +  D+C+ CG C   CP      + E  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVDKDKCVGCGYCLAACPYQVRFFNPEDH 154


>gi|198243341|ref|YP_002215382.1| nitrate reductase 1 subunit beta [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390269|ref|ZP_03216880.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207856730|ref|YP_002243381.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|197937857|gb|ACH75190.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602714|gb|EDZ01260.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|206708533|emb|CAR32854.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 512

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|153006436|ref|YP_001380761.1| nitrate reductase subunit beta [Anaeromyxobacter sp. Fw109-5]
 gi|152030009|gb|ABS27777.1| nitrate reductase, beta subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 485

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  C   CP    Y+ GE+ +  I  + C    +C P CP          G   
Sbjct: 186 CNHCLNPACAAACPSGAIYKRGEDGVVLIDREACRGWRMCVPACPYKKTFHSWSEGKSE 244


>gi|16765104|ref|NP_460719.1| nitrate reductase 1 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|168241342|ref|ZP_02666274.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450438|ref|YP_002045806.1| nitrate reductase 1 subunit beta [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197265719|ref|ZP_03165793.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420292|gb|AAL20678.1| nitrate reductase 1, FeS (beta) subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194408742|gb|ACF68961.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197243974|gb|EDY26594.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205339556|gb|EDZ26320.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261246949|emb|CBG24766.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993709|gb|ACY88594.1| nitrate reductase 1 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158287|emb|CBW17786.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912752|dbj|BAJ36726.1| nitrate reductase 1 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323130033|gb|ADX17463.1| nitrate reductase 1 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988650|gb|AEF07633.1| nitrate reductase 1 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|330828774|ref|YP_004391726.1| iron-sulfur cluster-binding protein [Aeromonas veronii B565]
 gi|328803910|gb|AEB49109.1| Iron-sulfur cluster-binding protein [Aeromonas veronii B565]
          Length = 588

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C    C++VCP D        + I P  C   G C   CP  AI      
Sbjct: 229 GCS--RCLDVCPTDALKPINGRIQIDPHLCQGFGSCASACPTGAIGYHQPD 277



 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +   +   L     +CI CG+CE  CP  AI
Sbjct: 456 CTLCMG--CVAVCPSRALHAVGHAPGLNFIEQDCIQCGMCEKACPEQAI 502


>gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment
           culture clone BF]
          Length = 595

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V E C  C    C +VCPV     + +    I P++C  C  C   C   AI
Sbjct: 543 IVPEECKKC--GACAKVCPVGAIKGKPKELHEIDPEKCTKCEACIKACHFKAI 593



 Score = 34.2 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +VCP     +  + + I P+EC  CG C   CPV AIK   +   E
Sbjct: 528 KVCPAGVCKK-LSKIRIVPEECKKCGACAKVCPVGAIKGKPKELHE 572


>gi|224583747|ref|YP_002637545.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224468274|gb|ACN46104.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|196233759|ref|ZP_03132598.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Chthoniobacter flavus Ellin428]
 gi|196222121|gb|EDY16652.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Chthoniobacter flavus Ellin428]
          Length = 934

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C++  C  VCPV         L  +  + C+    C   CP    + +       +
Sbjct: 765 PCMHCENAPCELVCPVGATVHDHEGLNVMVYNRCVGTRYCSNNCPYKVRRFN-------F 817

Query: 67  LKINSEYAT 75
           LK N +++ 
Sbjct: 818 LKFNDDHSE 826


>gi|167993203|ref|ZP_02574298.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205328687|gb|EDZ15451.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|89074812|ref|ZP_01161266.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34]
 gi|89049387|gb|EAR54949.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34]
          Length = 204

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C EVCPV    +  + + ++   C+ C +C   CP  AI  D
Sbjct: 51  CRHCEDAPCAEVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFD 100


>gi|327403178|ref|YP_004344016.1| molybdopterin oxidoreductase, iron-sulfur-binding subunit
           [Fluviicola taffensis DSM 16823]
 gi|327318686|gb|AEA43178.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Fluviicola taffensis DSM 16823]
          Length = 1102

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT--EPGLEL 65
           C  C H  C  VCPV         L  +  + CI    C   CP    + +    P  + 
Sbjct: 900 CQQCNHAPCETVCPVAATTHSNEGLNQMTYNRCIGTRYCANNCPYKVRRFNWFNYPSYKK 959

Query: 66  WLKIN 70
           + +IN
Sbjct: 960 FTEIN 964


>gi|260598192|ref|YP_003210763.1| respiratory nitrate reductase 1 beta chain [Cronobacter turicensis
           z3032]
 gi|260217369|emb|CBA31403.1| Respiratory nitrate reductase 1 beta chain [Cronobacter turicensis
           z3032]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|289823638|ref|ZP_06543250.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|315452565|ref|YP_004072835.1| putative formate dehydrogenase subunit B [Helicobacter felis ATCC
           49179]
 gi|315131617|emb|CBY82245.1| putative formate dehydrogenase subunit B [Helicobacter felis ATCC
           49179]
          Length = 212

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C  C    C +VCPVDCFY  E+ +   + + CI CG C   CP  A
Sbjct: 64  ISIACQHCTDAPCAQVCPVDCFYIREDGIVLHNKETCIGCGYCLYACPFGA 114


>gi|269216392|ref|ZP_06160246.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Slackia exigua ATCC 700122]
 gi|269130651|gb|EEZ61729.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Slackia exigua ATCC 700122]
          Length = 170

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C+EVCPV    + E+  + +  D CI C  C   CP DA   D +
Sbjct: 41 PCQHCDTPSCIEVCPVGATSKREDGVVVVDKDICIGCASCVSACPYDARAIDAD 94



 Score = 33.4 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG--------VCEPECPVDAI 55
           V  + CI C    CV  CP D      +       E             +C+  CP  AI
Sbjct: 69  VDKDICIGC--ASCVSACPYDARAIDADAGVADKCEMCVHRLSNGVETTMCQLCCPNRAI 126

Query: 56  KPDTEPGLE 64
                   E
Sbjct: 127 VVGDLDDPE 135


>gi|257460010|ref|ZP_05625114.1| formate dehydrogenase iron-sulfur subunit [Campylobacter gracilis
           RM3268]
 gi|257442451|gb|EEV17590.1| formate dehydrogenase iron-sulfur subunit [Campylobacter gracilis
           RM3268]
          Length = 185

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C  C    C +VCPV CFY   + +     D+CI CG C   CP  A
Sbjct: 56  ACQHCTDAPCAQVCPVQCFYIRTDGVVLHDKDKCIGCGYCLYACPFGA 103


>gi|238913663|ref|ZP_04657500.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|237731756|ref|ZP_04562237.1| nitrate reductase 1 [Citrobacter sp. 30_2]
 gi|226907295|gb|EEH93213.1| nitrate reductase 1 [Citrobacter sp. 30_2]
          Length = 512

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|225026580|ref|ZP_03715772.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
 gi|224956072|gb|EEG37281.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
          Length = 656

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           +V+  E C  C    C   CPV            I    CI CG CE  C   AI  +
Sbjct: 600 FVISPERCKGCSK--CARNCPVGAISGQIKKPYVIDDSICIKCGACESACAFHAIHIE 655


>gi|156933699|ref|YP_001437615.1| hypothetical protein ESA_01521 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531953|gb|ABU76779.1| hypothetical protein ESA_01521 [Cronobacter sakazakii ATCC BAA-894]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|62180327|ref|YP_216744.1| nitrate reductase 1, FeS (beta) subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167553935|ref|ZP_02347678.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|62127960|gb|AAX65663.1| nitrate reductase 1, FeS (beta) subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|205321759|gb|EDZ09598.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|322714801|gb|EFZ06372.1| Respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|16760123|ref|NP_455740.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142106|ref|NP_805448.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56413315|ref|YP_150390.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161613745|ref|YP_001587710.1| hypothetical protein SPAB_01470 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168233791|ref|ZP_02658849.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168260015|ref|ZP_02681988.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168462763|ref|ZP_02696694.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820499|ref|ZP_02832499.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444066|ref|YP_002041013.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194469647|ref|ZP_03075631.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197249326|ref|YP_002146267.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362240|ref|YP_002141877.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204927543|ref|ZP_03218744.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|213428331|ref|ZP_03361081.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213650211|ref|ZP_03380264.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864730|ref|ZP_03386849.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|25285394|pir||AI0648 respiratory nitrate reductase 1 beta chain [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502417|emb|CAD08372.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137735|gb|AAO69297.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127572|gb|AAV77078.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161363109|gb|ABX66877.1| hypothetical protein SPAB_01470 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402729|gb|ACF62951.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194456011|gb|EDX44850.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634215|gb|EDX52567.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093717|emb|CAR59190.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197213029|gb|ACH50426.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204322885|gb|EDZ08081.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205332155|gb|EDZ18919.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205342633|gb|EDZ29397.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350919|gb|EDZ37550.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|320085736|emb|CBY95514.1| nitrate reductase beta chain [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 511

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|134298016|ref|YP_001111512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134050716|gb|ABO48687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 1010

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            YV    C+ C    CVEVCP           G     I+P  C  CG C   C   AI 
Sbjct: 934 AYVDKRKCMAC--GVCVEVCPAKAATLVTDERGNTVADINPALCKGCGACSSSCRCGAIN 991



 Score = 36.9 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 21/88 (23%), Gaps = 29/88 (32%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID-- 42
           Y+    C  C    C E CPV                            AI   +C+   
Sbjct: 104 YIDVNKCTGC--GSCAEACPVKVDDAFNQGLNKRKAIYKLYAQAFPNAYAIDSSKCLKFK 161

Query: 43  -------CGVCEPECPVDAIKPDTEPGL 63
                  CG C   C   AI    +   
Sbjct: 162 NLSNDKLCGKCIKACQAGAINHHMQDEE 189


>gi|70991122|ref|XP_750410.1| NADH-quinone oxidoreductase, 23 kDa subunit [Aspergillus fumigatus
           Af293]
 gi|66848042|gb|EAL88372.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           fumigatus Af293]
 gi|159130884|gb|EDP55997.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           fumigatus A1163]
          Length = 228

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 126 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 183

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 184 VE----------TSNAEYATETREELLYNKEKLLANGDKWEPE 216


>gi|331684511|ref|ZP_08385103.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H299]
 gi|331078126|gb|EGI49332.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H299]
          Length = 644

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|303257317|ref|ZP_07343331.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302860808|gb|EFL83885.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 197

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +   C  CK   CV+VCP    ++ E+    I  ++CI C +C   CP  A   + E
Sbjct: 53  YFLPTVCQNCKDAPCVKVCPTGASFKTEDGQVLIDKEKCIGCKMCIAACPYGARSFNPE 111


>gi|297537625|ref|YP_003673394.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methylotenera sp. 301]
 gi|297256972|gb|ADI28817.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methylotenera sp. 301]
          Length = 435

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
             +    C  C    CV+ CP            +  P  CI  G C   CPV+AI
Sbjct: 51  PVIDLTKC--CGSGACVKACPEKALSLINGKAVLTDPTHCIGHGACLEACPVEAI 103


>gi|224418325|ref|ZP_03656331.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter canadensis MIT 98-5491]
 gi|253827646|ref|ZP_04870531.1| formate dehydrogenase subunit B [Helicobacter canadensis MIT
           98-5491]
 gi|313141855|ref|ZP_07804048.1| formate dehydrogenase iron-sulfur subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|253511052|gb|EES89711.1| formate dehydrogenase subunit B [Helicobacter canadensis MIT
           98-5491]
 gi|313130886|gb|EFR48503.1| formate dehydrogenase iron-sulfur subunit [Helicobacter canadensis
           MIT 98-5491]
          Length = 209

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V+  C+ C    C +VCPVDCFY   + +       CI CG C   CP  A
Sbjct: 63  VSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 113


>gi|193213037|ref|YP_001998990.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobaculum parvum NCIB 8327]
 gi|193086514|gb|ACF11790.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobaculum
           parvum NCIB 8327]
          Length = 199

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++T C+  CP    +  ++ +  ++ D CI C  C   CP DA  P     +E   
Sbjct: 60  CMHCENTPCLSACPTGATHMNDDGIVLVNNDRCIGCYACCIACPYDARYPYDREDVEKEH 119

Query: 68  KI 69
           ++
Sbjct: 120 EL 121


>gi|158520473|ref|YP_001528343.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509299|gb|ABW66266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 361

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C  C+   C ++CP++     ++   +    CI CGVC   CP DA+  +     
Sbjct: 295 VDADTCTGCE--ACADICPMEAIEMKDDIAHVSDSRCIGCGVCAYHCPADALALERTGQR 352

Query: 64  ELWL 67
           E+++
Sbjct: 353 EVFV 356


>gi|32265726|ref|NP_859758.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter hepaticus ATCC 51449]
 gi|32261774|gb|AAP76824.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter hepaticus ATCC 51449]
          Length = 209

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V+  C+ C    C +VCPVDCFY   + +       CI CG C   CP  A
Sbjct: 63  VSIACMHCADAPCAKVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 113


>gi|126458481|ref|YP_001075578.1| nitrate reductase subunit beta [Burkholderia pseudomallei 1106a]
 gi|167742590|ref|ZP_02415364.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 14]
 gi|167849603|ref|ZP_02475111.1| nitrate reductase, beta subunit [Burkholderia pseudomallei B7210]
 gi|242312987|ref|ZP_04812004.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1106b]
 gi|126232249|gb|ABN95662.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1106a]
 gi|242136226|gb|EES22629.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1106b]
          Length = 509

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|283785479|ref|YP_003365344.1| respiratory nitrate reductase 1 beta chain [Citrobacter rodentium
           ICC168]
 gi|282948933|emb|CBG88536.1| respiratory nitrate reductase 1 beta chain [Citrobacter rodentium
           ICC168]
          Length = 511

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|242309248|ref|ZP_04808403.1| fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter pullorum MIT 98-5489]
 gi|239524289|gb|EEQ64155.1| fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter pullorum MIT 98-5489]
          Length = 209

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V+  C+ C    C +VCPVDCFY   + +       CI CG C   CP  A
Sbjct: 63  VSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 113


>gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 626

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M+Y +  + C  C    C  +CP      E +    I   +CI CG C   C   AI+
Sbjct: 569 MSYEIDKDKCKGCSK--CARMCPAGAITGEIKKPYTIDQSKCIKCGACMDGCAFKAIQ 624


>gi|168237815|ref|ZP_02662873.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737276|ref|YP_002114792.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712778|gb|ACF91999.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289267|gb|EDY28634.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 511

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|167841573|ref|ZP_02468257.1| nitrate reductase, beta subunit [Burkholderia thailandensis MSMB43]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|145616212|ref|XP_360940.2| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15]
 gi|145009964|gb|EDJ94620.1| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15]
          Length = 229

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAVCPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 185 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 217


>gi|126727364|ref|ZP_01743199.1| formate dehydrogenase, iron-sulfur subunit, putative
           [Rhodobacterales bacterium HTCC2150]
 gi|126703359|gb|EBA02457.1| formate dehydrogenase, iron-sulfur subunit, putative
           [Rhodobacterales bacterium HTCC2150]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQSEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|71065173|ref|YP_263900.1| respiratory nitrate reductase beta subunit [Psychrobacter arcticus
           273-4]
 gi|71038158|gb|AAZ18466.1| respiratory nitrate reductase beta subunit [Psychrobacter arcticus
           273-4]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|323204947|gb|EFZ89933.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323222456|gb|EGA06828.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 130

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + ++
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNS 118


>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +    CI C  T C  VCPV+    E +    I  ++C+ CG C   CPV AI
Sbjct: 544 IDPAKCIGC--TKCARVCPVNAITGEIKKPHVIDAEKCVKCGACAEACPVKAI 594



 Score = 36.5 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CP        +F  I P +CI C  C   CPV+AI  +
Sbjct: 529 KKCPAGACVALTSF-VIDPAKCIGCTKCARVCPVNAITGE 567


>gi|290560092|pdb|3EGW|B Chain B, The Crystal Structure Of The Narghi Mutant Narh - C16a
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|257463175|ref|ZP_05627575.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           sp. D12]
 gi|317060766|ref|ZP_07925251.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
 gi|313686442|gb|EFS23277.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
          Length = 594

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 540 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 591


>gi|226329443|ref|ZP_03804961.1| hypothetical protein PROPEN_03348 [Proteus penneri ATCC 35198]
 gi|225202629|gb|EEG84983.1| hypothetical protein PROPEN_03348 [Proteus penneri ATCC 35198]
          Length = 352

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 10 MMYL-PRLCEHCLNPACVATCPSGAIYKRAEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 68

Query: 59 TE 60
           +
Sbjct: 69 WK 70


>gi|163740593|ref|ZP_02147987.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161386451|gb|EDQ10826.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 629

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 3   YVVTEN--C-------ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           YV TE   C         C  T C+++CP        + ++I P  C  CG C   CP  
Sbjct: 240 YVRTEPLLCAHSRAGQTGC--TRCLDICPTGAISPAGDHVSIDPMICAGCGSCASLCPSG 297

Query: 54  AIKPDTEPGLELWLKI 69
           AI  D  P   L  +I
Sbjct: 298 AITYDAPPTDALMRRI 313



 Score = 36.9 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V ++NC LC    CV +CP            L    D C+ CG+C   CP DAI  ++
Sbjct: 476 VSSDNCTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCATICPEDAITYES 531


>gi|91226902|ref|ZP_01261499.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 12G01]
 gi|91188865|gb|EAS75150.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 12G01]
          Length = 255

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161


>gi|21226237|ref|NP_632159.1| ferredoxin oxidoreductase [Methanosarcina mazei Go1]
 gi|20904473|gb|AAM29831.1| Ferredoxin oxidoreductase [Methanosarcina mazei Go1]
          Length = 438

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            CI CK     E CP+    +GEN    +P+ C +CG+C   C  +A
Sbjct: 332 KCINCKVCPVAEACPMGAVSKGENGAEHNPELCFNCGLCISRCRGEA 378


>gi|15606463|ref|NP_213843.1| DMSO reductase chain B [Aquifex aeolicus VF5]
 gi|2983679|gb|AAC07244.1| DMSO reductase chain B [Aquifex aeolicus VF5]
          Length = 254

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + ++C+ C+   CV VCP    Y+ E    + ++ D+CI C +C   CP    + D  
Sbjct: 67  FHLPKSCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWACPYGCREFDEA 126

Query: 61  PGLEL 65
             +  
Sbjct: 127 DKVMK 131


>gi|327401566|ref|YP_004342405.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327317074|gb|AEA47690.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 261

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+H  C +VC     +  ++ +  I    CI C  C   CP +A   + +  LE   
Sbjct: 117 CNHCRHPACAQVCLTKATFVRKDGIVMIDFHRCIGCRYCIVACPYNARTFNFKDPLEGLD 176

Query: 68  KIN 70
            IN
Sbjct: 177 HIN 179


>gi|325088907|gb|EGC42217.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 225

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 123 EERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 180

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 181 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 213


>gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 594

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 540 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 591


>gi|238927772|ref|ZP_04659532.1| nitrate reductase [Selenomonas flueggei ATCC 43531]
 gi|238884319|gb|EEQ47957.1| nitrate reductase [Selenomonas flueggei ATCC 43531]
          Length = 472

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + I  D C     C P CP   I  + E     
Sbjct: 180 CNHCLNPACVAACPSGAIYKRDEDGVVLISQDGCRGWRHCVPACPYKKIYYNWETNKAE 238


>gi|167906562|ref|ZP_02493767.1| nitrate reductase, beta subunit [Burkholderia pseudomallei NCTC
           13177]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|53722186|ref|YP_111171.1| respiratory nitrate reductase subunit [Burkholderia pseudomallei
           K96243]
 gi|52212600|emb|CAH38626.1| putative respiratory nitrate reductase subunit [Burkholderia
           pseudomallei K96243]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|116178838|ref|XP_001219268.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Chaetomium globosum
           CBS 148.51]
 gi|88184344|gb|EAQ91812.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Chaetomium globosum
           CBS 148.51]
          Length = 223

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 121 EERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 178

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 179 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 211


>gi|76819592|ref|YP_335280.1| nitrate reductase subunit beta [Burkholderia pseudomallei 1710b]
 gi|126442732|ref|YP_001062625.1| nitrate reductase subunit beta [Burkholderia pseudomallei 668]
 gi|134283419|ref|ZP_01770119.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 305]
 gi|167819753|ref|ZP_02451433.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 91]
 gi|167828139|ref|ZP_02459610.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 9]
 gi|167914918|ref|ZP_02502009.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 112]
 gi|167922762|ref|ZP_02509853.1| nitrate reductase, beta subunit [Burkholderia pseudomallei BCC215]
 gi|217418435|ref|ZP_03449942.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 576]
 gi|226200193|ref|ZP_03795738.1| nitrate reductase, beta subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237510102|ref|ZP_04522817.1| nitrate reductase, beta subunit [Burkholderia pseudomallei MSHR346]
 gi|254190246|ref|ZP_04896755.1| nitrate reductase, beta subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193347|ref|ZP_04899781.1| nitrate reductase, beta subunit [Burkholderia pseudomallei S13]
 gi|254265053|ref|ZP_04955918.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1710a]
 gi|254300505|ref|ZP_04967951.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 406e]
 gi|76584065|gb|ABA53539.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1710b]
 gi|126222223|gb|ABN85728.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 668]
 gi|134245168|gb|EBA45262.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 305]
 gi|157810189|gb|EDO87359.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 406e]
 gi|157937923|gb|EDO93593.1| nitrate reductase, beta subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169650100|gb|EDS82793.1| nitrate reductase, beta subunit [Burkholderia pseudomallei S13]
 gi|217397739|gb|EEC37754.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 576]
 gi|225927701|gb|EEH23743.1| nitrate reductase, beta subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|235002307|gb|EEP51731.1| nitrate reductase, beta subunit [Burkholderia pseudomallei MSHR346]
 gi|254216055|gb|EET05440.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1710a]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|313667518|ref|YP_004047802.1| ferredoxin [Neisseria lactamica ST-640]
 gi|313004980|emb|CBN86408.1| putative ferredoxin [Neisseria lactamica 020-06]
          Length = 279

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I     P 
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKFMHTVIADECTGCGLCVAPCPVDCIHMQ--PV 129

Query: 63  LELWLKINSEYA 74
            + +L     ++
Sbjct: 130 SDAFLPRARRFS 141



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|293604806|ref|ZP_06687203.1| tetrathionate reductase subunit B [Achromobacter piechaudii ATCC
           43553]
 gi|292816634|gb|EFF75718.1| tetrathionate reductase subunit B [Achromobacter piechaudii ATCC
           43553]
          Length = 256

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ +  +  + C+ C  C   CP DA  I  DT+   +
Sbjct: 112 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCAYCVQACPYDARFINHDTQTADK 170


>gi|224105397|ref|XP_002313797.1| predicted protein [Populus trichocarpa]
 gi|222850205|gb|EEE87752.1| predicted protein [Populus trichocarpa]
          Length = 222

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 120 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  + +  
Sbjct: 178 VEGP----------NFEFSTETHEELLYDKEKLLENGDRWETE 210


>gi|213650841|ref|ZP_03380894.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
          Length = 154

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|220916882|ref|YP_002492186.1| nitrate reductase, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954736|gb|ACL65120.1| nitrate reductase, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 489

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ GE+ +  I  D C    +C   CP   +  + E
Sbjct: 184 CNHCLNAACVAACPSGAIYKRGEDGVVLISQDVCKGWRMCVSACPYKKVYFNWE 237


>gi|326623128|gb|EGE29473.1| nitrate reductase 1, beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 504

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 169 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 227

Query: 59  TE 60
            +
Sbjct: 228 WK 229


>gi|327308414|ref|XP_003238898.1| ferredoxin-like iron-sulfur protein [Trichophyton rubrum CBS
           118892]
 gi|326459154|gb|EGD84607.1| ferredoxin-like iron-sulfur protein [Trichophyton rubrum CBS
           118892]
          Length = 227

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 125 EERCIACKL--CEAICPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 182

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 183 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 215


>gi|304437706|ref|ZP_07397658.1| respiratory nitrate reductase, beta subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369339|gb|EFM23012.1| respiratory nitrate reductase, beta subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 472

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + I  D C     C P CP   I  + E     
Sbjct: 180 CNHCLNPACVAACPSGAIYKRDEDGVVLISQDGCRGWRHCVPACPYKKIYYNWETNKAE 238


>gi|167768244|ref|ZP_02440297.1| hypothetical protein CLOSS21_02800 [Clostridium sp. SS2/1]
 gi|317497791|ref|ZP_07956103.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167709768|gb|EDS20347.1| hypothetical protein CLOSS21_02800 [Clostridium sp. SS2/1]
 gi|291560258|emb|CBL39058.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [butyrate-producing bacterium
          SSC/2]
 gi|316894904|gb|EFV17074.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 56

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ CI C    C   CP     EG+    I  D C++CG C   CP  AI  +
Sbjct: 1  MAYVISDACISC--GACEGTCPAGAISEGDGQYVIDADTCMECGACADGCPAGAISQE 56


>gi|218781191|ref|YP_002432509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762575|gb|ACL05041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 390

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            ++ C+LC    C + CP       ++ + I   +CI CG+C   C   A+    +   E
Sbjct: 297 DSDKCVLC--GKCEKRCPTQAIKIKKDAVKIDLGKCIGCGLCAAACKPGALTMAPKTKQE 354


>gi|197122114|ref|YP_002134065.1| nitrate reductase subunit beta [Anaeromyxobacter sp. K]
 gi|196171963|gb|ACG72936.1| nitrate reductase, beta subunit [Anaeromyxobacter sp. K]
          Length = 489

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ GE+ +  I  D C    +C   CP   +  + E
Sbjct: 184 CNHCLNAACVAACPSGAIYKRGEDGVVLISQDVCKGWRMCVSACPYKKVYFNWE 237


>gi|86158593|ref|YP_465378.1| respiratory nitrate reductase beta subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775104|gb|ABC81941.1| respiratory nitrate reductase beta subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 489

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ GE+ +  I  D C    +C   CP   +  + E
Sbjct: 184 CNHCLNAACVAACPSGAIYKRGEDGVVLISQDVCKGWRMCVSACPYKKVYFNWE 237


>gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 594

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 540 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 591


>gi|315054381|ref|XP_003176565.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311338411|gb|EFQ97613.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 227

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 125 EERCIACKL--CEAICPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 182

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 183 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 215


>gi|257790218|ref|YP_003180824.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317489680|ref|ZP_07948184.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830334|ref|ZP_08163791.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257474115|gb|ACV54435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911274|gb|EFV32879.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487801|gb|EGC90239.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 178

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +V   C+ C+   C  VCP    Y  ++ +  +  ++CI C  C   CP  A
Sbjct: 53  IVPTQCMHCEDAPCAAVCPTHATYITDSGVVLVDEEKCIGCKYCMAACPYGA 104


>gi|224373329|ref|YP_002607701.1| formate dehydrogenase subunit B [Nautilia profundicola AmH]
 gi|223588850|gb|ACM92586.1| formate dehydrogenase subunit B [Nautilia profundicola AmH]
          Length = 198

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCPVDCFY  E+ +     D+CI CG C   CP  A
Sbjct: 58  ACMHCTDAPCAQVCPVDCFYIREDGIVLHDKDKCIGCGYCLYACPFGA 105


>gi|168236599|ref|ZP_02661657.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736674|ref|YP_002113729.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712176|gb|ACF91397.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290426|gb|EDY29782.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|299143765|ref|ZP_07036845.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518250|gb|EFI41989.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 316

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   C + CP D  +  +N   I   +CI+CG+C  +CP  AI  +    +E   +
Sbjct: 217 CIACKL--CEKNCPKDAIHVVDNLARIDYTKCINCGICVSKCPTGAIFCEYPERVEKMKE 274


>gi|212712379|ref|ZP_03320507.1| hypothetical protein PROVALCAL_03467 [Providencia alcalifaciens DSM
           30120]
 gi|212685125|gb|EEB44653.1| hypothetical protein PROVALCAL_03467 [Providencia alcalifaciens DSM
           30120]
          Length = 205

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CVE CP    ++   +  + +    C+ C  CE  CP  A + D 
Sbjct: 59  SYYLSISCNHCSNPTCVEGCPTGAMHKRAEDGLVVVDQSICVGCRYCELRCPYGAPQFDE 118

Query: 60  E 60
           +
Sbjct: 119 K 119


>gi|330506892|ref|YP_004383320.1| sulfite reductase subunit beta [Methanosaeta concilii GP-6]
 gi|328927700|gb|AEB67502.1| sulfite reductase, beta subunit [Methanosaeta concilii GP-6]
          Length = 286

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +  E C  C    CVEVC V      E    I  D+C+ CG C   CP  A
Sbjct: 164 IDLEKCTGC--GKCVEVCKVGATKIVEEKAIIDYDKCVRCGRCVAVCPEAA 212


>gi|294646919|ref|ZP_06724540.1| protein HymB [Bacteroides ovatus SD CC 2a]
 gi|292637864|gb|EFF56261.1| protein HymB [Bacteroides ovatus SD CC 2a]
          Length = 489

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 433 TYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 486


>gi|256024604|ref|ZP_05438469.1| putative oxidoreductase Fe-S binding subunit [Escherichia sp.
           4_1_40B]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|256019316|ref|ZP_05433181.1| putative oxidoreductase Fe-S binding subunit [Shigella sp. D9]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|268680891|ref|YP_003305322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618922|gb|ACZ13287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 220

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP +  +  E  +  + P +CI C  C   CP DA   D 
Sbjct: 59  CNHCIDAPCVSVCPTNASHFAEGGIVKVDPHKCILCKGCMEACPYDARFVDD 110



 Score = 34.2 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG 44
           V    CILCK   C+E CP D  +  +  +A+      D  
Sbjct: 86  VDPHKCILCKG--CMEACPYDARFVDDTMVAVDKCTFCDHR 124


>gi|289207245|ref|YP_003459311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288942876|gb|ADC70575.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 243

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP    + D E
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRESDGIVLVDYDKCIGCKYCSWACPYGVREVDAE 126


>gi|323957393|gb|EGB53115.1| glutamate synthase [Escherichia coli H263]
          Length = 641

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 108



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 85  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 142

Query: 62  GLEL 65
           GL+ 
Sbjct: 143 GLQQ 146


>gi|315614959|gb|EFU95597.1| uncharacterized protein ygfT [Escherichia coli 3431]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|300921217|ref|ZP_07137590.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           115-1]
 gi|300411823|gb|EFJ95133.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           115-1]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|300906565|ref|ZP_07124256.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           84-1]
 gi|301303043|ref|ZP_07209170.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           124-1]
 gi|300401604|gb|EFJ85142.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           84-1]
 gi|300841707|gb|EFK69467.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           124-1]
 gi|315256768|gb|EFU36736.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           85-1]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|262041809|ref|ZP_06014994.1| respiratory nitrate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040801|gb|EEW41887.1| respiratory nitrate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 511

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|156742845|ref|YP_001432974.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
 gi|156234173|gb|ABU58956.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
          Length = 482

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 5   VTENCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V   C  C+    CVE CP D     ++   +  D C  CG C P CP DA+ 
Sbjct: 357 VANACRQCRVGAECVEACPEDAIVWNDSGALMITDACTGCGECVPACPYDAVH 409



 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY 27
             ++T+ C  C   +CV  CP D  +
Sbjct: 386 ALMITDACTGC--GECVPACPYDAVH 409


>gi|114797890|ref|YP_760272.1| nitrate reductase subunit beta [Hyphomonas neptunium ATCC 15444]
 gi|114738064|gb|ABI76189.1| nitrate reductase, beta subunit [Hyphomonas neptunium ATCC 15444]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKVYYN 234

Query: 59  TE 60
            E
Sbjct: 235 WE 236


>gi|191166003|ref|ZP_03027839.1| protein aegA [Escherichia coli B7A]
 gi|309793957|ref|ZP_07688382.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           145-7]
 gi|332280429|ref|ZP_08392842.1| conserved hypothetical protein [Shigella sp. D9]
 gi|190903951|gb|EDV63664.1| protein aegA [Escherichia coli B7A]
 gi|308122364|gb|EFO59626.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           145-7]
 gi|332102781|gb|EGJ06127.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|324005537|gb|EGB74756.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           57-2]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|269961739|ref|ZP_06176099.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833522|gb|EEZ87621.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 255

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + E
Sbjct: 109 CNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINEE 161


>gi|262374580|ref|ZP_06067854.1| nitrate reductase, beta subunit [Acinetobacter junii SH205]
 gi|262310576|gb|EEY91666.1| nitrate reductase, beta subunit [Acinetobacter junii SH205]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVSACPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|73982757|ref|XP_851642.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) isoform 1 [Canis familiaris]
          Length = 216

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 118 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 175

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 176 VEGP----------NFEFSTETHEELLYNKEKLLSNGDKWEAE 208


>gi|46202049|ref|ZP_00053861.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C+ C++  C EVCP    ++ ++    +  ++CI C  C   CP        E
Sbjct: 52  PCMHCENPSCREVCPTGATFKDKDGFVLVDWEKCIGCKYCMVACPYGVRFYAEE 105


>gi|288573330|ref|ZP_06391687.1| Fe-S cluster domain protein [Dethiosulfovibrio peptidovorans DSM
          11002]
 gi|288569071|gb|EFC90628.1| Fe-S cluster domain protein [Dethiosulfovibrio peptidovorans DSM
          11002]
          Length = 436

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C++VCP +     +  + I P+ C+DCG C  +C   AI  + +
Sbjct: 12 ACRGC--ARCIKVCPTEAMRVLDGKVMIIPELCVDCGECIRKCEDRAILINED 62


>gi|259416523|ref|ZP_05740443.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
 gi|259347962|gb|EEW59739.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
          Length = 667

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++ CP        + +AI P  C  CG C   CP  AI  D  P   L+L++
Sbjct: 294 TGC--TRCLDACPTGAITPNGDSVAIDPMICAGCGACASLCPSSAITYDAPPAESLFLRV 351



 Score = 38.0 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C LC    CV +CP            L    D C+ CG+C   CP DAI  +
Sbjct: 514 VDQDACTLCL--SCVSLCPPGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAITYE 568


>gi|167898201|ref|ZP_02485603.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 7894]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|149191081|ref|ZP_01869341.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           shilonii AK1]
 gi|148835109|gb|EDL52086.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           shilonii AK1]
          Length = 228

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C++  CV VCP    Y+ E    I     +C+ CG C   CP      + E
Sbjct: 97  DSCQHCENPPCVYVCPTGAAYKDEETGIIDVHNEKCVGCGYCLAACPYQVRFFNPE 152


>gi|84516958|ref|ZP_01004315.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
 gi|84509076|gb|EAQ05536.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
          Length = 253

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+   +  + ++  +CI C +C   CP  A + D + G+  
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEADCIGCSLCAWACPYGARELDAKAGVMK 140


>gi|310659593|ref|YP_003937314.1| ferredoxin [Clostridium sticklandii DSM 519]
 gi|322510027|sp|P80168|FER_CLOSD RecName: Full=Ferredoxin
 gi|308826371|emb|CBH22409.1| Ferredoxin [Clostridium sticklandii]
          Length = 56

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV+    G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVINDSCISC--GACEPECPVNAITAGDDKYVIDAATCIDCGACAGVCPVDAPQPE 56


>gi|284162170|ref|YP_003400793.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Archaeoglobus profundus DSM 5631]
 gi|284012167|gb|ADB58120.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Archaeoglobus profundus DSM 5631]
          Length = 655

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            YV  E C  C    C+ +CP       E     I    C+ CGVC   CP  AIK    
Sbjct: 584 AYVDEEKCSGC--GICIPLCPFQAIEIDERKRAKIDELLCMGCGVCASSCPSRAIKHRLF 641

Query: 61  PGLELWLKI 69
               +  +I
Sbjct: 642 ESETIRAEI 650


>gi|256824301|ref|YP_003148261.1| formate dehydrogenase subunit beta [Kytococcus sedentarius DSM
           20547]
 gi|256687694|gb|ACV05496.1| formate dehydrogenase beta subunit [Kytococcus sedentarius DSM
           20547]
          Length = 391

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+  T+   +
Sbjct: 196 SDVCKHCTHAGCLDVCPTGALFRSEFGTVVVQADICNGCGYCVGACPFGVIERRTDATGD 255


>gi|225560616|gb|EEH08897.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 225

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 123 EERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 180

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 181 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 213


>gi|218559879|ref|YP_002392792.1| oxidoreductase Fe-S binding subunit [Escherichia coli S88]
 gi|218366648|emb|CAR04402.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli S88]
 gi|222034582|emb|CAP77324.1| Uncharacterized protein ygfT [Escherichia coli LF82]
 gi|281179892|dbj|BAI56222.1| putative oxidoreductase [Escherichia coli SE15]
 gi|294489481|gb|ADE88237.1| protein aegA [Escherichia coli IHE3034]
 gi|307554863|gb|ADN47638.1| putative oxidoreductase, Fe-S subunit [Escherichia coli ABU 83972]
 gi|312947419|gb|ADR28246.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|70607938|ref|YP_256808.1| indolepyruvate ferredoxin oxidoreductase alpha [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568586|gb|AAY81515.1| indolepyruvate ferredoxin oxidoreductase alpha [Sulfolobus
           acidocaldarius DSM 639]
          Length = 611

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 2   TYVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP-- 57
             V    C  C  T C +   CP     + +    I    CI CG C P CP  AI    
Sbjct: 543 AVVDMAKCTGC--TICYDYFTCPAIIPRKDK-KAEIDVYNCIGCGACVPVCPFKAISIKG 599

Query: 58  DTEPGLEL-WLK 68
           D   G +  WL+
Sbjct: 600 DKPEGWDKLWLE 611


>gi|330859342|emb|CBX69688.1| formate hydrogenlyase subunit 2 [Yersinia enterocolitica W22703]
          Length = 257

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV+      N + +    CI C +C   CP  AI
Sbjct: 95  CRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAI 141


>gi|332161103|ref|YP_004297680.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325665333|gb|ADZ41977.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 213

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+      N + +    CI C +C   CP  AI
Sbjct: 51 CRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAI 97


>gi|320195004|gb|EFW69633.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           WV_060327]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|309703247|emb|CBJ02582.1| putative oxidoreductase [Escherichia coli ETEC H10407]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 33.8 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 5/59 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTE 60
             + CI CK   C   CP       +       +          C   CP  A++   +
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDD 139


>gi|331654383|ref|ZP_08355383.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M718]
 gi|331047765|gb|EGI19842.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M718]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|293395662|ref|ZP_06639945.1| respiratory nitrate reductase [Serratia odorifera DSM 4582]
 gi|291421981|gb|EFE95227.1| respiratory nitrate reductase [Serratia odorifera DSM 4582]
          Length = 513

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|238619159|ref|YP_002913984.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.4]
 gi|238380228|gb|ACR41316.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.4]
          Length = 612

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP     + +    I    CI CG C P CP  AI        
Sbjct: 546 VDLEKCTGCSICYDYFTCPAIIPRKDK-KAEIDNYTCIGCGACIPVCPFKAISL-KGNKP 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|227827015|ref|YP_002828794.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.14.25]
 gi|227458810|gb|ACP37496.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.14.25]
          Length = 612

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP     + +    I    CI CG C P CP  AI        
Sbjct: 546 VDLEKCTGCSICYDYFTCPAIIPRKDK-KAEIDNYTCIGCGACIPVCPFKAISL-KGNKP 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|209920341|ref|YP_002294425.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           SE11]
 gi|209913600|dbj|BAG78674.1| putative oxidoreductase [Escherichia coli SE11]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|110680099|ref|YP_683106.1| formate dehydrogenase Fe-S subunit [Roseobacter denitrificans OCh
           114]
 gi|163731481|ref|ZP_02138928.1| formate dehydrogenase Fe-S subunit [Roseobacter litoralis Och 149]
 gi|109456215|gb|ABG32420.1| formate dehydrogenase Fe-S subunit [Roseobacter denitrificans OCh
           114]
 gi|161394935|gb|EDQ19257.1| formate dehydrogenase Fe-S subunit [Roseobacter litoralis Och 149]
          Length = 198

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 102


>gi|26249299|ref|NP_755339.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           CFT073]
 gi|91212264|ref|YP_542250.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UTI89]
 gi|117625118|ref|YP_854106.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli APEC
           O1]
 gi|227888434|ref|ZP_04006239.1| oxidoreductase Fe-S binding subunit [Escherichia coli 83972]
 gi|237706471|ref|ZP_04536952.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300980321|ref|ZP_07174975.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           45-1]
 gi|301049331|ref|ZP_07196301.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           185-1]
 gi|306812212|ref|ZP_07446410.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           NC101]
 gi|26109706|gb|AAN81909.1|AE016765_311 Hypothetical protein ygfT [Escherichia coli CFT073]
 gi|91073838|gb|ABE08719.1| hypothetical protein YgfT [Escherichia coli UTI89]
 gi|115514242|gb|ABJ02317.1| putative NADPH-dependent glutamate synthase beta chain [Escherichia
           coli APEC O1]
 gi|226899511|gb|EEH85770.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227834703|gb|EEJ45169.1| oxidoreductase Fe-S binding subunit [Escherichia coli 83972]
 gi|300298930|gb|EFJ55315.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           185-1]
 gi|300409329|gb|EFJ92867.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           45-1]
 gi|305854250|gb|EFM54688.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           NC101]
 gi|307625541|gb|ADN69845.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UM146]
 gi|315289452|gb|EFU48847.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           110-3]
 gi|315293882|gb|EFU53234.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           153-1]
 gi|323951675|gb|EGB47550.1| glutamate synthase [Escherichia coli H252]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|62738590|pdb|1Y4Z|B Chain B, The Crystal Structure Of Nitrate Reductase A, Narghi, In
           Complex With The Q-Site Inhibitor Pentachlorophenol
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|194426242|ref|ZP_03058797.1| protein aegA [Escherichia coli B171]
 gi|194415550|gb|EDX31817.1| protein aegA [Escherichia coli B171]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLELWLKINSE 72
           GL+ W+K+  +
Sbjct: 146 GLQ-WIKVARQ 155


>gi|193070557|ref|ZP_03051496.1| protein aegA [Escherichia coli E110019]
 gi|192956140|gb|EDV86604.1| protein aegA [Escherichia coli E110019]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|332294953|ref|YP_004436876.1| nitrate reductase, beta subunit [Thermodesulfobium narugense DSM
           14796]
 gi|332178056|gb|AEE13745.1| nitrate reductase, beta subunit [Thermodesulfobium narugense DSM
           14796]
          Length = 478

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ +    + I  ++C    +C   CP   I  + +
Sbjct: 180 CEHCLNPACVASCPSGAIYKRDEDGIVLIDQNKCRGFRMCVSACPYKKIYYNYK 233


>gi|332159045|ref|YP_004424324.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           sp. NA2]
 gi|331034508|gb|AEC52320.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           sp. NA2]
          Length = 648

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  CK       CP   +   +    + P  C  CG C   CP  A +   E
Sbjct: 589 VNEEKCTGCKICINAYGCPAIYWDPEKKKARVDPLMCWGCGGCAQVCPFGAFEKVRE 645


>gi|326405118|ref|YP_004285200.1| hypothetical protein ACMV_29710 [Acidiphilium multivorum AIU301]
 gi|325051980|dbj|BAJ82318.1| hypothetical protein ACMV_29710 [Acidiphilium multivorum AIU301]
          Length = 247

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C++  CV VCP    Y+   +  + ++ D CI C +C   CP  A + D   G+  
Sbjct: 83  SCLHCENPLCVTVCPTGASYKRAEDGIVLVNTDICIGCKLCSWACPYGAREFDEHDGVMK 142


>gi|323941593|gb|EGB37773.1| glutamate synthase [Escherichia coli E482]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|323935882|gb|EGB32181.1| glutamate synthase [Escherichia coli E1520]
          Length = 641

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 108



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 85  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 142

Query: 62  GLEL 65
           GL+ 
Sbjct: 143 GLQQ 146


>gi|318604983|emb|CBY26481.1| formate hydrogenlyase subunit 2 [Yersinia enterocolitica subsp.
          palearctica Y11]
          Length = 215

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+      N + +    CI C +C   CP  AI
Sbjct: 53 CRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAI 99


>gi|301027817|ref|ZP_07191122.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           196-1]
 gi|299879079|gb|EFI87290.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           196-1]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|189191492|ref|XP_001932085.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973691|gb|EDU41190.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 230

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 128 EERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAI 185

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 186 VEGP----------NAEYATETREELLYNKEKLLANGDKWEPE 218


>gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
 gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
          Length = 629

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +++  E C  C    C   CP D      +    I  D+CI CG CE  C   AI  +
Sbjct: 573 FIISPERCKGCSK--CARNCPADAISGRIKEPYVIDNDKCIKCGACESACAFGAIHIE 628


>gi|152970760|ref|YP_001335869.1| nitrate reductase 1, Fe-S (beta) subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206578698|ref|YP_002237934.1| nitrate reductase 1, beta subunit [Klebsiella pneumoniae 342]
 gi|238895272|ref|YP_002920007.1| nitrate reductase 1 beta subunit [Klebsiella pneumoniae NTUH-K2044]
 gi|288934843|ref|YP_003438902.1| nitrate reductase subunit beta [Klebsiella variicola At-22]
 gi|290508986|ref|ZP_06548357.1| nitrate reductase, beta subunit [Klebsiella sp. 1_1_55]
 gi|330009822|ref|ZP_08306597.1| nitrate reductase, beta subunit [Klebsiella sp. MS 92-3]
 gi|150955609|gb|ABR77639.1| nitrate reductase 1, Fe-S (beta) subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206567756|gb|ACI09532.1| nitrate reductase 1, beta subunit [Klebsiella pneumoniae 342]
 gi|238547589|dbj|BAH63940.1| nitrate reductase 1 beta subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|288889552|gb|ADC57870.1| nitrate reductase, beta subunit [Klebsiella variicola At-22]
 gi|289778380|gb|EFD86377.1| nitrate reductase, beta subunit [Klebsiella sp. 1_1_55]
 gi|328534718|gb|EGF61280.1| nitrate reductase, beta subunit [Klebsiella sp. MS 92-3]
          Length = 511

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|123443013|ref|YP_001006988.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122089974|emb|CAL12831.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 213

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+      N + +    CI C +C   CP  AI
Sbjct: 51 CRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAI 97


>gi|34557118|ref|NP_906933.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Wolinella succinogenes DSM 1740]
 gi|34482833|emb|CAE09833.1| MOLYBDOPTERIN OXIDOREDUCTASE, IRON-SULFUR BINDING SUBUNIT
           [Wolinella succinogenes]
          Length = 187

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            +   C  C++  C EVCP +  Y  E     + P +CI C  C   CP DA   D
Sbjct: 59  FIPSQCQHCENAPCQEVCPTNATYYDERGFVSVDPKKCIMCTYCMTACPYDARYVD 114


>gi|300947606|ref|ZP_07161778.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           116-1]
 gi|300954275|ref|ZP_07166738.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           175-1]
 gi|301643765|ref|ZP_07243803.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           146-1]
 gi|307139573|ref|ZP_07498929.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           H736]
 gi|331643575|ref|ZP_08344706.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H736]
 gi|887837|gb|AAA83068.1| ORF_f644 [Escherichia coli]
 gi|300318736|gb|EFJ68520.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           175-1]
 gi|300452803|gb|EFK16423.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           116-1]
 gi|301077864|gb|EFK92670.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           146-1]
 gi|315137486|dbj|BAJ44645.1| oxidoreductase Fe-S binding subunit [Escherichia coli DH1]
 gi|331037046|gb|EGI09270.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H736]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|89109666|ref|AP_003446.1| fused predicted oxidoreductase Fe-S subunit and nucleotide-binding
           subunit [Escherichia coli str. K-12 substr. W3110]
 gi|90111509|ref|NP_417363.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|170082448|ref|YP_001731768.1| fused oxidoreductase: Fe-S subunit; nucleotide-binding subunit
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238902012|ref|YP_002927808.1| fused putative oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli BW2952]
 gi|6136710|sp|Q46820|YGFT_ECOLI RecName: Full=Uncharacterized protein ygfT
 gi|85675699|dbj|BAE76952.1| fused predicted oxidoreductase Fe-S subunit and nucleotide-binding
           subunit [Escherichia coli str. K12 substr. W3110]
 gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|169890283|gb|ACB03990.1| fused predicted oxidoreductase: Fe-S subunit; nucleotide-binding
           subunit [Escherichia coli str. K-12 substr. DH10B]
 gi|238861232|gb|ACR63230.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli BW2952]
 gi|260448068|gb|ACX38490.1| glutamate synthase, small subunit [Escherichia coli DH1]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|324119927|gb|EGC13806.1| glutamate synthase [Escherichia coli E1167]
          Length = 641

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 108



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 85  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 142

Query: 62  GLEL 65
           GL+ 
Sbjct: 143 GLQQ 146


>gi|324017282|gb|EGB86501.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           117-3]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|320182215|gb|EFW57118.1| putative oxidoreductase Fe-S binding subunit [Shigella boydii ATCC
           9905]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|312964855|ref|ZP_07779095.1| uncharacterized protein ygfT [Escherichia coli 2362-75]
 gi|312290411|gb|EFR18291.1| uncharacterized protein ygfT [Escherichia coli 2362-75]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|300718079|ref|YP_003742882.1| Nitrate reductase 1 beta chain [Erwinia billingiae Eb661]
 gi|299063915|emb|CAX61035.1| Nitrate reductase 1 beta chain [Erwinia billingiae Eb661]
          Length = 514

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|295095653|emb|CBK84743.1| respiratory nitrate reductase beta subunit [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 511

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|215488186|ref|YP_002330617.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266258|emb|CAS10687.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O127:H6 str. E2348/69]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|168760013|ref|ZP_02785020.1| protein aegA [Escherichia coli O157:H7 str. EC4501]
 gi|187776143|ref|ZP_02800769.2| protein aegA [Escherichia coli O157:H7 str. EC4196]
 gi|188024587|ref|ZP_02772659.2| protein aegA [Escherichia coli O157:H7 str. EC4113]
 gi|189009935|ref|ZP_02803905.2| protein aegA [Escherichia coli O157:H7 str. EC4076]
 gi|189401888|ref|ZP_02778830.2| protein aegA [Escherichia coli O157:H7 str. EC4401]
 gi|189402895|ref|ZP_02791885.2| protein aegA [Escherichia coli O157:H7 str. EC4486]
 gi|189404784|ref|ZP_02810738.2| protein aegA [Escherichia coli O157:H7 str. EC869]
 gi|189405896|ref|ZP_02825025.2| protein aegA [Escherichia coli O157:H7 str. EC508]
 gi|208806338|ref|ZP_03248675.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812191|ref|ZP_03253520.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|209398308|ref|YP_002272360.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|187768802|gb|EDU32646.1| protein aegA [Escherichia coli O157:H7 str. EC4196]
 gi|188017760|gb|EDU55882.1| protein aegA [Escherichia coli O157:H7 str. EC4113]
 gi|189003254|gb|EDU72240.1| protein aegA [Escherichia coli O157:H7 str. EC4076]
 gi|189358372|gb|EDU76791.1| protein aegA [Escherichia coli O157:H7 str. EC4401]
 gi|189363783|gb|EDU82202.1| protein aegA [Escherichia coli O157:H7 str. EC4486]
 gi|189369334|gb|EDU87750.1| protein aegA [Escherichia coli O157:H7 str. EC4501]
 gi|189374106|gb|EDU92522.1| protein aegA [Escherichia coli O157:H7 str. EC869]
 gi|189377665|gb|EDU96081.1| protein aegA [Escherichia coli O157:H7 str. EC508]
 gi|208726139|gb|EDZ75740.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733468|gb|EDZ82155.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|209159708|gb|ACI37141.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4115]
          Length = 641

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 108



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 85  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 142

Query: 62  GLEL 65
           GL+ 
Sbjct: 143 GLQQ 146


>gi|134298021|ref|YP_001111517.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134050721|gb|ABO48692.1| tungsten-dependent benzoyl-CoA reductase-related protein bamE
           [Desulfotomaculum reducens MI-1]
          Length = 1010

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            YV    C+ C    CVEVCP           G     I+P  C  CG C   C   AI 
Sbjct: 934 AYVDKRKCMAC--GVCVEVCPAKAATLVTDERGNTAADINPALCKGCGACSSSCRCGAIN 991



 Score = 36.9 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 21/88 (23%), Gaps = 29/88 (32%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID-- 42
           Y+    C  C    C E CPV                            AI   +C+   
Sbjct: 104 YIDVNKCTGC--GSCAEACPVKVDDAFNQGLNKRKAIYKLYAQAFPNAYAIDSSKCLKFK 161

Query: 43  -------CGVCEPECPVDAIKPDTEPGL 63
                  CG C   C   AI    +   
Sbjct: 162 NLSNDKLCGKCIKACQAGAINHHMQDEE 189


>gi|114320443|ref|YP_742126.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226837|gb|ABI56636.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 196

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPVDCFY  ++ +     D CI CG C   CP  A
Sbjct: 51  VSVACMHCTDAPCAAVCPVDCFYTTDDGVVLHDKDLCIGCGYCFYACPFGA 101


>gi|117922345|ref|YP_871537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614677|gb|ABK50131.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 553

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + + P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEVDPYLCHGAGSCASACPTGAIGYDLPTPQALHSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKIINRYREQAQTAPVI 267



 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 629

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +++  E C  C    C   CP D      +    I  D+CI CG CE  C   AI  +
Sbjct: 573 FIISPERCKGCSK--CARNCPADAISGRIKEPYVIDNDKCIKCGACESACAFGAIHIE 628


>gi|330935903|ref|XP_003305174.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1]
 gi|311317931|gb|EFQ86730.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1]
          Length = 230

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 128 EERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAI 185

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 186 VEGP----------NAEYATETREELLYNKEKLLANGDKWEPE 218


>gi|308187894|ref|YP_003932025.1| nitrate reductase beta chain [Pantoea vagans C9-1]
 gi|308058404|gb|ADO10576.1| nitrate reductase beta chain [Pantoea vagans C9-1]
          Length = 514

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|254699071|ref|ZP_05160899.1| NarH, respiratory nitrate reductase, beta subunit [Brucella
          abortus bv. 2 str. 86/8/59]
          Length = 361

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 25 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 83

Query: 59 T 59
           
Sbjct: 84 W 84


>gi|254794838|ref|YP_003079675.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|254594238|gb|ACT73599.1| fused predicted oxidoreductase: Fe-S subunit, nucleotide-binding
           subunit [Escherichia coli O157:H7 str. TW14359]
 gi|320656572|gb|EFX24468.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|315230306|ref|YP_004070742.1| Fe-S-cluster-containing hydrogenase components 1 [Thermococcus
          barophilus MP]
 gi|315183334|gb|ADT83519.1| Fe-S-cluster-containing hydrogenase components 1 [Thermococcus
          barophilus MP]
          Length = 168

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
          +  NC  C+   C+ VCP +  Y+  +    I P +CI C +C   CP  A   D
Sbjct: 44 IPINCRHCEKAPCMNVCPSNAIYKDTDGAVIIDPKKCIGCLMCLAVCPFGAPSYD 98


>gi|126732914|ref|ZP_01748704.1| formate dehydrogenase, iron-sulfur subunit, putative [Sagittula
           stellata E-37]
 gi|126706620|gb|EBA05695.1| formate dehydrogenase, iron-sulfur subunit, putative [Sagittula
           stellata E-37]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|83311771|ref|YP_422035.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82946612|dbj|BAE51476.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 211

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            C+ C    C+ VCPVDCFY+  + +   + D CI CG C   CP  A + 
Sbjct: 54  ACMHCSDAPCMAVCPVDCFYQTGDGIVLHNKDLCIGCGYCFYACPFGAPQY 104


>gi|311279661|ref|YP_003941892.1| nitrate reductase, beta subunit [Enterobacter cloacae SCF1]
 gi|308748856|gb|ADO48608.1| nitrate reductase, beta subunit [Enterobacter cloacae SCF1]
          Length = 514

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 619

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C +VCPV     E +    I   +CI CG C  +C  DAI
Sbjct: 566 IDPDKCKGC--GACKKVCPVGAISGEKKEAHEIDAGKCIKCGSCIEKCKFDAI 616


>gi|293412245|ref|ZP_06654968.1| oxidoreductase Fe-S binding subunit [Escherichia coli B354]
 gi|291469016|gb|EFF11507.1| oxidoreductase Fe-S binding subunit [Escherichia coli B354]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLE 64
           GL+
Sbjct: 146 GLQ 148


>gi|298529028|ref|ZP_07016431.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510464|gb|EFI34367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 670

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V TE C  C    CV +CP D              I    C  CGVC   CP  AI    
Sbjct: 598 VHTEKCSGC--GICVPLCPYDAITMKMVDDHPRAEIDMTACKGCGVCTTACPSAAIVLHG 655

Query: 60  EPGLELWLKINS 71
               +++ +I +
Sbjct: 656 YEEEQIYAQIEA 667


>gi|218555435|ref|YP_002388348.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           IAI1]
 gi|218696482|ref|YP_002404149.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           55989]
 gi|260845554|ref|YP_003223332.1| fused putative oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O103:H2 str. 12009]
 gi|260857009|ref|YP_003230900.1| fused putative oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O26:H11 str. 11368]
 gi|260869563|ref|YP_003235965.1| fused putative oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O111:H- str. 11128]
 gi|307310495|ref|ZP_07590143.1| glutamate synthase, small subunit [Escherichia coli W]
 gi|218353214|emb|CAU99127.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli 55989]
 gi|218362203|emb|CAQ99821.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli IAI1]
 gi|257755658|dbj|BAI27160.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O26:H11 str. 11368]
 gi|257760701|dbj|BAI32198.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O103:H2 str. 12009]
 gi|257765919|dbj|BAI37414.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O111:H- str. 11128]
 gi|306909390|gb|EFN39885.1| glutamate synthase, small subunit [Escherichia coli W]
 gi|315062190|gb|ADT76517.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli W]
 gi|323183439|gb|EFZ68836.1| hypothetical protein ECOK1357_3218 [Escherichia coli 1357]
 gi|323377226|gb|ADX49494.1| glutamate synthase, small subunit [Escherichia coli KO11]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 35.3 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLELWLKINSE 72
           GL+ W+K+  +
Sbjct: 141 GLQ-WIKVARQ 150


>gi|205352569|ref|YP_002226370.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272350|emb|CAR37230.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627629|gb|EGE33972.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|188587191|ref|YP_001918736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351878|gb|ACB86148.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 275

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           Y   + C+ C    C+ VCP    Y  E+    +  D CI C  C   CP + I  D
Sbjct: 70  YFSKQGCMHCTDAGCLTVCPTGAIYRTESGTVNVDFDRCIGCNYCAANCPFNVISFD 126


>gi|169599789|ref|XP_001793317.1| hypothetical protein SNOG_02720 [Phaeosphaeria nodorum SN15]
 gi|160705324|gb|EAT89451.2| hypothetical protein SNOG_02720 [Phaeosphaeria nodorum SN15]
          Length = 230

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 128 EERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAI 185

Query: 56  KPDTEPGLELWLKINSEYAT--QWPNITTKKESLPSAAKMDGV 96
                         N+EYAT  +   +  K++ L +  K +  
Sbjct: 186 VEGP----------NAEYATESREELLYNKEKLLANGDKWEPE 218


>gi|157159085|ref|YP_001464224.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           E24377A]
 gi|157081115|gb|ABV20823.1| protein aegA homolog [Escherichia coli E24377A]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|170018867|ref|YP_001723821.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli ATCC
           8739]
 gi|169753795|gb|ACA76494.1| glutamate synthase, small subunit [Escherichia coli ATCC 8739]
          Length = 639

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|301327286|ref|ZP_07220542.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           78-1]
 gi|300846149|gb|EFK73909.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           78-1]
 gi|323946628|gb|EGB42651.1| glutamate synthase [Escherichia coli H120]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|15803423|ref|NP_289456.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15833013|ref|NP_311786.1| oxidoreductase Fe-S binding subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|195936503|ref|ZP_03081885.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208821824|ref|ZP_03262144.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|217327438|ref|ZP_03443521.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|261226199|ref|ZP_05940480.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256546|ref|ZP_05949079.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284207|ref|YP_003501025.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|12517413|gb|AAG58015.1|AE005519_1 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|13363231|dbj|BAB37182.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. Sakai]
 gi|208741947|gb|EDZ89629.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209760638|gb|ACI78631.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|209760640|gb|ACI78632.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|209760642|gb|ACI78633.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|209760644|gb|ACI78634.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|209760646|gb|ACI78635.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|217319805|gb|EEC28230.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|290764080|gb|ADD58041.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|320189229|gb|EFW63888.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640529|gb|EFX10068.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320645776|gb|EFX14761.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651076|gb|EFX19516.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320667167|gb|EFX34130.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326339030|gb|EGD62845.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. 1044]
 gi|326343087|gb|EGD66855.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. 1125]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|224583930|ref|YP_002637728.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224468457|gb|ACN46287.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 514

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV +CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVAICPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|193063468|ref|ZP_03044557.1| protein aegA [Escherichia coli E22]
 gi|293449209|ref|ZP_06663630.1| oxidoreductase Fe-S binding subunit [Escherichia coli B088]
 gi|300815663|ref|ZP_07095887.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           107-1]
 gi|192930745|gb|EDV83350.1| protein aegA [Escherichia coli E22]
 gi|291322299|gb|EFE61728.1| oxidoreductase Fe-S binding subunit [Escherichia coli B088]
 gi|300531592|gb|EFK52654.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           107-1]
 gi|320202545|gb|EFW77115.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           EC4100B]
 gi|323154766|gb|EFZ40964.1| hypothetical protein ECEPECA14_3375 [Escherichia coli EPECa14]
 gi|323162524|gb|EFZ48374.1| hypothetical protein ECE128010_1289 [Escherichia coli E128010]
 gi|323180329|gb|EFZ65881.1| hypothetical protein ECOK1180_1011 [Escherichia coli 1180]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLELWLKINSE 72
           GL+ W+K+  +
Sbjct: 146 GLQ-WIKVARQ 155


>gi|320104680|ref|YP_004180271.1| cyclic nucleotide-binding protein [Isosphaera pallida ATCC 43644]
 gi|319751962|gb|ADV63722.1| cyclic nucleotide-binding protein [Isosphaera pallida ATCC 43644]
          Length = 790

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP-DTE 60
           ++V  +C  C    C+  CPVD        L I   D CI CG C   CP   I   + E
Sbjct: 647 FLVASSCRSCLDPTCLPACPVDAINRNGKSLEIRIKDHCIGCGKCAENCPYGNINMVELE 706

Query: 61  PGLEL 65
           P    
Sbjct: 707 PPRRK 711


>gi|296101984|ref|YP_003612130.1| nitrate reductase 1, beta subunit [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056443|gb|ADF61181.1| nitrate reductase 1, beta subunit [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 511

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|238752912|ref|ZP_04614375.1| Respiratory nitrate reductase beta subunit [Yersinia rohdei ATCC
           43380]
 gi|238708859|gb|EEQ01114.1| Respiratory nitrate reductase beta subunit [Yersinia rohdei ATCC
           43380]
          Length = 506

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 168 MMYL-PRLCEHCLNPACVATCPSGAIYKRAEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 226

Query: 59  TE 60
            +
Sbjct: 227 WK 228


>gi|146311960|ref|YP_001177034.1| respiratory nitrate reductase beta subunit [Enterobacter sp. 638]
 gi|145318836|gb|ABP60983.1| respiratory nitrate reductase beta subunit [Enterobacter sp. 638]
          Length = 511

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|157371122|ref|YP_001479111.1| nitrate reductase subunit beta [Serratia proteamaculans 568]
 gi|157322886|gb|ABV41983.1| nitrate reductase, beta subunit [Serratia proteamaculans 568]
          Length = 514

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|83718035|ref|YP_439446.1| nitrate reductase subunit beta [Burkholderia thailandensis E264]
 gi|167577889|ref|ZP_02370763.1| nitrate reductase, beta subunit [Burkholderia thailandensis TXDOH]
 gi|167616014|ref|ZP_02384649.1| nitrate reductase, beta subunit [Burkholderia thailandensis Bt4]
 gi|83651860|gb|ABC35924.1| nitrate reductase, beta subunit [Burkholderia thailandensis E264]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|291545260|emb|CBL18369.1| 4Fe-4S binding domain [Ruminococcus sp. 18P13]
          Length = 56

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M YV++++CI+C    C   CPV     G++   I  D CI+CG C   CPV A
Sbjct: 1  MAYVISDDCIMC--GACESECPVSAISAGDSKYVIDADTCIECGACAGVCPVSA 52


>gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 631

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C+  CPV+C   + +    I   +CI CG C   CPVDAI
Sbjct: 577 YEITDKCIGC--TKCLRNCPVNCINGKVKQVHTIDQSKCIKCGACCSGCPVDAI 628


>gi|171680662|ref|XP_001905276.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939958|emb|CAP65184.1| unnamed protein product [Podospora anserina S mat+]
          Length = 220

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 118 EERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 175

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 176 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 208


>gi|149926436|ref|ZP_01914697.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149824799|gb|EDM84013.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 200

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCPV+CFY+ +  +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCQAVCPVNCFYKTDEGVVLHDKDLCIGCGYCFYACPFGA 101


>gi|74313445|ref|YP_311864.1| putative oxidoreductase Fe-S binding subunit [Shigella sonnei
           Ss046]
 gi|73856922|gb|AAZ89629.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|323167910|gb|EFZ53600.1| hypothetical protein SS53G_1789 [Shigella sonnei 53G]
 gi|323173883|gb|EFZ59512.1| hypothetical protein ECLT68_2202 [Escherichia coli LT-68]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLELWLKINSE 72
           GL+ W+K+  +
Sbjct: 146 GLQ-WIKVARQ 155


>gi|121997163|ref|YP_001001950.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121588568|gb|ABM61148.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Halorhodospira halophila SL1]
          Length = 253

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C++  CV VCP    Y+ E+ +  +  D CI C  C   CP        E  L  
Sbjct: 57  PCMQCENPTCVYVCPTRATYKTEDGVVLVDWDRCIGCKYCMIACPYGVRFYADEKPLIE 115


>gi|146291447|ref|YP_001181871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563137|gb|ABP74072.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 553

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + I P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALSSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKIISRFREQAQTAPVI 267



 Score = 40.4 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|325299224|ref|YP_004259141.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324318777|gb|ADY36668.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 260

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V TENC  C   +CVEVCP        EN +    + CI C  C   CP  A   D    
Sbjct: 186 VCTENCFGC--GECVEVCPTHAIRLNAENVIETDINRCIRCCACVKACPNGARVYDNP-- 241

Query: 63  LELWLKIN 70
              +L  N
Sbjct: 242 FAAFLHEN 249


>gi|322659222|gb|EFY55471.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|323243093|gb|EGA27113.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
          Length = 142

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + ++
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNS 118


>gi|229584184|ref|YP_002842685.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.27]
 gi|228019233|gb|ACP54640.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.27]
          Length = 612

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP     + +    I    CI CG C P CP  AI        
Sbjct: 546 VDLEKCTGCSICYDYFTCPAIIPRKDK-KAEIDNYTCIGCGACIPVCPFKAISL-KGNKP 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|227829891|ref|YP_002831670.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus L.S.2.15]
 gi|227456338|gb|ACP35025.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus L.S.2.15]
          Length = 612

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP     + +    I    CI CG C P CP  AI       L
Sbjct: 546 VDLEKCTGCSICYDYFTCPAIIPRKDK-KAEIDNYTCIGCGACIPVCPFKAISL-KGNKL 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|205351901|ref|YP_002225702.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207856078|ref|YP_002242729.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|205271682|emb|CAR36512.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206707881|emb|CAR32169.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626939|gb|EGE33282.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|154278457|ref|XP_001540042.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150413627|gb|EDN09010.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 225

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 123 EERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 180

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 181 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 213


>gi|23014297|ref|ZP_00054120.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 196

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            C+ C    C+ VCPVDCFY+  + +   + D CI CG C   CP  A + 
Sbjct: 54  ACMHCSDAPCMAVCPVDCFYQTSDGIVLHNKDLCIGCGYCFYACPFGAPQY 104


>gi|296452544|ref|ZP_06894241.1| ferredoxin [Clostridium difficile NAP08]
 gi|296881044|ref|ZP_06904987.1| ferredoxin [Clostridium difficile NAP07]
 gi|296258649|gb|EFH05547.1| ferredoxin [Clostridium difficile NAP08]
 gi|296427910|gb|EFH13814.1| ferredoxin [Clostridium difficile NAP07]
          Length = 70

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 15 MAYKITDACISC--GACEAECPVSCISAGDDAYVIDASSCIDCGSCAGACPVDAPQPE 70


>gi|270262316|ref|ZP_06190588.1| nitrate reductase, beta subunit [Serratia odorifera 4Rx13]
 gi|270044192|gb|EFA17284.1| nitrate reductase, beta subunit [Serratia odorifera 4Rx13]
          Length = 514

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|162452617|ref|YP_001614984.1| hypothetical protein sce4341 [Sorangium cellulosum 'So ce 56']
 gi|161163199|emb|CAN94504.1| hypothetical protein sce4341 [Sorangium cellulosum 'So ce 56']
          Length = 785

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           +C  C+   C+  CP     +       I    C  CG C   CP + I  
Sbjct: 373 SCQHCESPACMIECPTGAIGKDTGGEVFIRDALCTGCGACAKACPWENIAM 423


>gi|160935009|ref|ZP_02082395.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753]
 gi|156866462|gb|EDO59834.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753]
          Length = 431

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          MT +  + C+ C  T+C++ CP +     E    I  + CIDCG C   CP  A
Sbjct: 1  MT-LDKDKCLGC--TNCIKRCPTEAIRVREGKAQIISERCIDCGECIRVCPHHA 51


>gi|149189646|ref|ZP_01867928.1| tetrathionate reductase, subunit B [Vibrio shilonii AK1]
 gi|148836458|gb|EDL53413.1| tetrathionate reductase, subunit B [Vibrio shilonii AK1]
          Length = 255

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 109 CNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161


>gi|149246748|ref|XP_001527799.1| NADH-quinone oxidoreductase chain I [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447753|gb|EDK42141.1| NADH-quinone oxidoreductase chain I [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 246

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 144 EERCIACKL--CEAICPAQAITIEAEERADGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 201

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N EY+T      +  K++ L +  K +  
Sbjct: 202 VESP----------NVEYSTATREELLYNKEKLLDNGDKWEQE 234


>gi|88608014|ref|YP_506692.1| NADH dehydrogenase subunit I [Neorickettsia sennetsu str. Miyayama]
 gi|115502534|sp|Q2GCV4|NUOI_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88600183|gb|ABD45651.1| NADH dehydrogenase I, I subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 160

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 21/100 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG C+  CPVDA
Sbjct: 57  EERCIACKL--CEVVCPAQAITIEAAPRESDGSRRATKYDIDMTKCIYCGFCQEACPVDA 114

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
           I    E     + + N E       +  KK+ L + +K +
Sbjct: 115 I---VEGPNFEFARENRE-----DLLYDKKKLLDNGSKWE 146


>gi|332654077|ref|ZP_08419821.1| conserved domain protein [Ruminococcaceae bacterium D16]
 gi|332517163|gb|EGJ46768.1| conserved domain protein [Ruminococcaceae bacterium D16]
          Length = 56

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+++ CI C    C + CPV    +G +   I+   C+DCG C   CP+ AI
Sbjct: 1  MAYVISDACISC--GSCADACPVGAIAQGADHYEINAGACLDCGSCADSCPMSAI 53


>gi|284997007|ref|YP_003418774.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Sulfolobus islandicus L.D.8.5]
 gi|284444902|gb|ADB86404.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Sulfolobus islandicus L.D.8.5]
          Length = 612

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP     + +    I    CI CG C P CP  AI        
Sbjct: 546 VDLEKCTGCSICYDYFTCPAIIPRKDK-KAEIDNYTCIGCGACIPVCPFKAISL-KGNKP 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|261340129|ref|ZP_05967987.1| nitrate reductase, beta subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288318060|gb|EFC56998.1| nitrate reductase, beta subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 511

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|118591771|ref|ZP_01549167.1| formate dehydrogenase, iron-sulfur subunit, putative [Stappia
           aggregata IAM 12614]
 gi|118435764|gb|EAV42409.1| formate dehydrogenase, iron-sulfur subunit, putative [Stappia
           aggregata IAM 12614]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|16759572|ref|NP_455189.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29142655|ref|NP_805997.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213023991|ref|ZP_03338438.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
 gi|213051862|ref|ZP_03344740.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213419294|ref|ZP_03352360.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|213425125|ref|ZP_03357875.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581054|ref|ZP_03362880.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213622427|ref|ZP_03375210.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213647695|ref|ZP_03377748.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|289812473|ref|ZP_06543102.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
 gi|25285330|pir||AG0577 molybdopterin-containing oxidoreductase iron-sulfur chain STY0660
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501864|emb|CAD05089.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138286|gb|AAO69857.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|330990222|ref|ZP_08314198.1| Respiratory nitrate reductase 2 beta chain [Gluconacetobacter sp.
           SXCC-1]
 gi|329762706|gb|EGG79174.1| Respiratory nitrate reductase 2 beta chain [Gluconacetobacter sp.
           SXCC-1]
          Length = 487

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ E    + +  ++C    +C   CP   I  + 
Sbjct: 160 CEHCLNPTCVASCPSGAIYKREEDGIVLVDQEKCRGWRMCVSGCPYKKIYYNW 212


>gi|322613255|gb|EFY10198.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621325|gb|EFY18182.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623744|gb|EFY20582.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322629016|gb|EFY25795.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322631738|gb|EFY28492.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322637526|gb|EFY34228.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641866|gb|EFY38496.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322646711|gb|EFY43217.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322651411|gb|EFY47791.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322653138|gb|EFY49472.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322658858|gb|EFY55113.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322664872|gb|EFY61065.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322668874|gb|EFY65026.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322670620|gb|EFY66753.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322675361|gb|EFY71437.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322682168|gb|EFY78193.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322685001|gb|EFY80998.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193939|gb|EFZ79141.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197969|gb|EFZ83091.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201984|gb|EFZ87044.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323207117|gb|EFZ92070.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323211672|gb|EFZ96506.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323214356|gb|EFZ99107.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221507|gb|EGA05921.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225551|gb|EGA09781.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323231109|gb|EGA15225.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234059|gb|EGA18148.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238246|gb|EGA22304.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242520|gb|EGA26544.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248503|gb|EGA32437.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323251281|gb|EGA35153.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323259209|gb|EGA42852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323261520|gb|EGA45099.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264799|gb|EGA48300.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272364|gb|EGA55771.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
 gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
          Length = 594

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +V E C  C  T C   CPV+    E      I PD C+ CG+C   C  +AI
Sbjct: 538 TYEIVPETCTGC--TVCARNCPVNAITGERRQPHKIDPDICVRCGICMQVCNFNAI 591


>gi|304399200|ref|ZP_07381067.1| nitrate reductase, beta subunit [Pantoea sp. aB]
 gi|304353254|gb|EFM17634.1| nitrate reductase, beta subunit [Pantoea sp. aB]
          Length = 514

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPGGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|224535649|ref|ZP_03676188.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522722|gb|EEF91827.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 486

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP    +  E+    I  DECI CG+C   CP  AI     P
Sbjct: 116 YEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDECISCGICHKSCPYHAIVYIPVP 175

Query: 62  GLEL 65
             E 
Sbjct: 176 CEEA 179



 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + +  +  I   +CI CG C
Sbjct: 147 AWIDHDECISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDKKGIEHIDESKCIYCGKC 206

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 207 LNACPFGAIF 216


>gi|218551401|ref|YP_002385193.1| anaerobic reductase chain B [Escherichia fergusonii ATCC 35469]
 gi|301648118|ref|ZP_07247877.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|218358943|emb|CAQ91603.1| putative anaerobic reductase chain B (DMSO reductase iron-sulfur
           subunit) [Escherichia fergusonii ATCC 35469]
 gi|301073785|gb|EFK88591.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|324112272|gb|EGC06250.1| dimethylsulfoxide reductase [Escherichia fergusonii B253]
 gi|325499669|gb|EGC97528.1| anaerobic reductase chain B (DMSO reductase iron-sulfur subunit)
           [Escherichia fergusonii ECD227]
          Length = 208

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++  C  C    CV  CP    ++ E    + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYLSIACNHCDEPTCVAGCPTGAMHKREEDGLVLVDDSVCVGCRYCEMRCPYGAPQFDT 118


>gi|189467136|ref|ZP_03015921.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM
           17393]
 gi|189435400|gb|EDV04385.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM
           17393]
          Length = 486

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP    +  E+    I  DECI CG+C   CP  AI     P
Sbjct: 116 YEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDECISCGICHKSCPYHAIVYIPVP 175

Query: 62  GLEL 65
             E 
Sbjct: 176 CEEA 179



 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + +  +  I   +CI CG C
Sbjct: 147 AWIDHDECISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDKKGIEHIDESKCIYCGKC 206

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 207 LNACPFGAIF 216


>gi|167622243|ref|YP_001672537.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352265|gb|ABZ74878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 227

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C  T CV+VCP    Y+      +++   +C+ C  C   CP  
Sbjct: 95  SCQHCDDTPCVKVCPTGAAYKDPKTGIVSVDEWKCVGCQYCIAACPYQ 142


>gi|85704202|ref|ZP_01035305.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. 217]
 gi|149201547|ref|ZP_01878521.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|85671522|gb|EAQ26380.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. 217]
 gi|149144595|gb|EDM32624.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 198

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGIVLHSKDLCIGCGYCFYACPFGA 101


>gi|315427795|dbj|BAJ49389.1| phenylacetyl-CoA:acceptor oxidoreductase subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 211

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V  +C+ C    C+EVCP     +  +  + I  + C+ CG C   CP D      E  
Sbjct: 53  FVPLSCMHCAKPPCLEVCPTTATRQRSDGIVVIDINLCMGCGYCIVACPYDQRWLVKEE- 111

Query: 63  LELWLKINSEYATQWPNITTKKES 86
                    +Y         +   
Sbjct: 112 --------KKYFDGHQTPPEQVNP 127


>gi|288942194|ref|YP_003444434.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Allochromatium vinosum DSM 180]
 gi|288897566|gb|ADC63402.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Allochromatium vinosum DSM 180]
          Length = 240

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP    Y+  +   + +  D+CI C  C   CP  A + D +  +  
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRPDNGVVLVDYDKCIGCKYCSWACPYGARELDAQQKVMK 131


>gi|254517630|ref|ZP_05129686.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA]
 gi|226911379|gb|EEH96580.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA]
          Length = 496

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++C  C    C E C             I+ + C +CG+C+  CP DAI
Sbjct: 105 YSVTDSCRNCLAHKCHEACNFGAITYVAGRAYINQELCKECGMCKKACPYDAI 157



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFY--EGENFLAIHPDECIDCGV 45
            Y+  E C  C                  C  VCP       + +    I  + C++CG 
Sbjct: 135 AYINQELCKECGMCKKACPYDAIAEVMRPCKRVCPTGALDINQDDRRAMIKEETCVNCGS 194

Query: 46  CEPECPVDAI 55
           C   CP  AI
Sbjct: 195 CMSACPFGAI 204


>gi|261367343|ref|ZP_05980226.1| Fe-hydrogenase large subunit family protein [Subdoligranulum
           variabile DSM 15176]
 gi|282570103|gb|EFB75638.1| Fe-hydrogenase large subunit family protein [Subdoligranulum
           variabile DSM 15176]
          Length = 507

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 19/51 (37%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT  C  C    C EVCP            I    C+ CG C   CP  AI
Sbjct: 119 VTAMCQGCLAHPCQEVCPKHAISFRNGKSHIDQSLCVKCGRCVNSCPYSAI 169



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++    C+ C    CV  CP     + E                     I  D+C+ CG
Sbjct: 147 SHIDQSLCVKC--GRCVNSCPYSAIVKTERPCAAACGMGAIHSDQYGRADIDYDKCVSCG 204

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 205 MCLVNCPFGAI 215


>gi|167723623|ref|ZP_02406859.1| nitrate reductase, beta subunit [Burkholderia pseudomallei DM98]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|150007436|ref|YP_001302179.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
 gi|149935860|gb|ABR42557.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
          Length = 301

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LEL 65
            CI C    CV+VCP       E  +      C  CG C   CP  A++         E+
Sbjct: 51  KCIGC--GACVDVCPTGALTLTEAGIVTDRSLCRTCGRCAEVCPTLAMEMSGREYSIDEV 108

Query: 66  WLKINSE 72
             +I  E
Sbjct: 109 MREIEKE 115


>gi|319428322|gb|ADV56396.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens 200]
          Length = 553

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + I P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALSSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKIISRFREQAQTAPVI 267



 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|82776570|ref|YP_402919.1| nitrate reductase 1, beta subunit [Shigella dysenteriae Sd197]
 gi|309789139|ref|ZP_07683732.1| nitrate reductase, beta subunit [Shigella dysenteriae 1617]
 gi|81240718|gb|ABB61428.1| nitrate reductase 1, beta subunit [Shigella dysenteriae Sd197]
 gi|308922893|gb|EFP68407.1| nitrate reductase, beta subunit [Shigella dysenteriae 1617]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|116625966|ref|YP_828122.1| hydrogenase 2 protein HybA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229128|gb|ABJ87837.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 317

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V + C+ C    CV+ CP+    +G++ +   + ++CI C  C+  CP +  K +    
Sbjct: 114 FVKQQCMHCVDPSCVQACPLSALTKGDHGIVAWNGNQCIGCRCCQLSCPFNIPKFEWSSF 173

Query: 63  LEL 65
              
Sbjct: 174 NPK 176


>gi|189346239|ref|YP_001942768.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189340386|gb|ACD89789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 258

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    C + CP +  +   + +  +    CI C  C   CP  +   +     E
Sbjct: 120 CNHCAEPPCTKACPTEATFRRWDGIVSMDYHRCIGCRFCMAACPYGSRSFNWRDPRE 176


>gi|218889846|ref|YP_002438710.1| respiratory nitrate reductase beta chain [Pseudomonas aeruginosa
           LESB58]
 gi|218770069|emb|CAW25831.1| respiratory nitrate reductase beta chain [Pseudomonas aeruginosa
           LESB58]
          Length = 513

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|153952957|ref|YP_001393722.1| hypothetical protein CKL_0320 [Clostridium kluyveri DSM 555]
 gi|219853615|ref|YP_002470737.1| hypothetical protein CKR_0272 [Clostridium kluyveri NBRC 12016]
 gi|146345838|gb|EDK32374.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219567339|dbj|BAH05323.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 253

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + V ++CI C    C + CPV+             ++C  C  C   CP  AI+ D +
Sbjct: 184 FNVEDSCIGC--GLCEKKCPVEAIKMRNGKPVWITEQCAMCLGCLHRCPKFAIQYDDK 239


>gi|158521885|ref|YP_001529755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510711|gb|ABW67678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 362

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  +NC  C    CVE C ++      + + +    CI CG C   CP +A+        
Sbjct: 291 VNPDNCTGC--GTCVEHCQMEALTLDNDMVVLQESWCIGCGNCAGACPSEALVMVRHSTT 348

Query: 64  ELWLKIN 70
           +  ++ N
Sbjct: 349 KP-IEFN 354


>gi|73982759|ref|XP_864136.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) isoform 2 [Canis familiaris]
          Length = 206

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLSNGDKWEAE 198


>gi|120600652|ref|YP_965226.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560745|gb|ABM26672.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 553

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + I P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALSSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKIISRFREQAQTAPVI 267



 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|300820689|ref|ZP_07100840.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           119-7]
 gi|331669620|ref|ZP_08370466.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA271]
 gi|331678871|ref|ZP_08379545.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H591]
 gi|300526953|gb|EFK48022.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           119-7]
 gi|331063288|gb|EGI35201.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA271]
 gi|331073701|gb|EGI45022.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H591]
          Length = 644

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.2 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|293409613|ref|ZP_06653189.1| nitrate reductase [Escherichia coli B354]
 gi|291470081|gb|EFF12565.1| nitrate reductase [Escherichia coli B354]
 gi|324113985|gb|EGC07959.1| nitrate reductase [Escherichia fergusonii B253]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|163736984|ref|ZP_02144402.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
 gi|161389588|gb|EDQ13939.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
          Length = 649

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 3   YVVTEN--C-------ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           YV TE   C         C  T C+++CP        + ++I P  C  CG C   CP  
Sbjct: 260 YVRTEPLLCAHSRAGQTGC--TRCLDICPTGAISPAGDHVSIDPMICAGCGSCASLCPSG 317

Query: 54  AIKPDTEPGLELWLKI 69
           AI  D  P   L  +I
Sbjct: 318 AITYDAPPTDALMRRI 333



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V ++NC LC    CV +CP            L    D C+ CG+C   CP DAI  +
Sbjct: 496 VSSDNCTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCATICPEDAITYE 550


>gi|85860137|ref|YP_462339.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85723228|gb|ABC78171.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 137

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ C+ C    C   CP D  +       +   P+ C  CG+C   CP  A+
Sbjct: 82  TDKCVHC--GACTAFCPTDALHMDRETMKVVFDPELCNGCGICVTACPARAM 131


>gi|15599069|ref|NP_252563.1| respiratory nitrate reductase beta chain [Pseudomonas aeruginosa
           PAO1]
 gi|116051910|ref|YP_789247.1| respiratory nitrate reductase beta subuni [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152987237|ref|YP_001346620.1| nitrate reductase subunit beta [Pseudomonas aeruginosa PA7]
 gi|296387610|ref|ZP_06877085.1| nitrate reductase subunit beta [Pseudomonas aeruginosa PAb1]
 gi|313109294|ref|ZP_07795262.1| respiratory nitrate reductase beta subuni [Pseudomonas aeruginosa
           39016]
 gi|9950053|gb|AAG07261.1|AE004804_9 respiratory nitrate reductase beta chain [Pseudomonas aeruginosa
           PAO1]
 gi|2765455|emb|CAA75541.1| respiratory nitrate reductase beta subunit [Pseudomonas aeruginosa
           PAO1]
 gi|115587131|gb|ABJ13146.1| respiratory nitrate reductase beta subuni [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|150962395|gb|ABR84420.1| nitrate reductase, beta subunit [Pseudomonas aeruginosa PA7]
 gi|310881764|gb|EFQ40358.1| respiratory nitrate reductase beta subuni [Pseudomonas aeruginosa
           39016]
          Length = 513

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|99080243|ref|YP_612397.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036523|gb|ABF63135.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|323491428|ref|ZP_08096612.1| hypothetical protein VIBR0546_18742 [Vibrio brasiliensis LMG 20546]
 gi|323314297|gb|EGA67377.1| hypothetical protein VIBR0546_18742 [Vibrio brasiliensis LMG 20546]
          Length = 228

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    Y+ E    I     +C+ CG C   CP      + E  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIIDVHKEKCVGCGYCLAACPYQVRFFNPEDH 154


>gi|260763558|ref|ZP_05875890.1| nitrate reductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260673979|gb|EEX60800.1| nitrate reductase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 350

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 14 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 72

Query: 59 T 59
           
Sbjct: 73 W 73


>gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 616

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C+ C  T C  VCPVDC   E +    I    CI CG C   C   A+
Sbjct: 563 IDAEKCVGC--TRCARVCPVDCISGEVKKPHLIDQRGCIRCGECLKACNFAAV 613


>gi|298528790|ref|ZP_07016194.1| protein of unknown function DUF362 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512442|gb|EFI36344.1| protein of unknown function DUF362 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 374

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV+  CI C    C   CPV       +   +  D+CI+C  C+  CP DAI
Sbjct: 308 VVSSRCISC--GICAGHCPVGAMSMSSSGPVLDRDKCINCYCCQEMCPEDAI 357


>gi|218548099|ref|YP_002381890.1| oxidoreductase Fe-S binding subunit [Escherichia fergusonii ATCC
           35469]
 gi|218355640|emb|CAQ88252.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia fergusonii ATCC
           35469]
          Length = 702

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P     +K
Sbjct: 99  CHHCEDAPCARSCPNGAISHVNDSVQVNQQKCIGCKSCVIACPFGTMQIVLSPVSAERVK 158


>gi|94263233|ref|ZP_01287050.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93456451|gb|EAT06571.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 291

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C  VCPV+   +     + +  D+CI C  C   CP    + D +  
Sbjct: 100 CQHCRKPACARVCPVNAISKLPEGPVVVVEDKCIGCRYCYQACPFSVPELDFDER 154


>gi|313143772|ref|ZP_07805965.1| formate dehydrogenase iron-sulfur subunit [Helicobacter cinaedi
           CCUG 18818]
 gi|313128803|gb|EFR46420.1| formate dehydrogenase iron-sulfur subunit [Helicobacter cinaedi
           CCUG 18818]
          Length = 204

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C +VCPVDCFY   + +   +   CI CG C   CP  A
Sbjct: 59  ISIACMHCADAPCAKVCPVDCFYIRADGIVLHNKKTCIGCGYCLYACPFGA 109


>gi|157377115|ref|YP_001475715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319489|gb|ABV38587.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 238

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPV 52
           C  C+   CV VCP       E +  + +    CI C  C   CP 
Sbjct: 95  CNNCETPSCVSVCPTGATFKREEDGIVVVDSTLCIGCNYCIQACPY 140


>gi|668987|emb|CAA59063.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 229

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    +  K++ L +  + +
Sbjct: 185 VEGP----------NFEFATETHEELLYDKEKLLENGDRWE 215


>gi|220932451|ref|YP_002509359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothermothrix orenii H 168]
 gi|219993761|gb|ACL70364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothermothrix orenii H 168]
          Length = 57

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ CI+C    C   CPVD   +G+N   I PD CIDCG C   CPV+AI  +
Sbjct: 1  MAHVISDECIMC--GACEPECPVDAISQGDNKYEIDPDTCIDCGACAEVCPVEAISEE 56


>gi|325496502|gb|EGC94361.1| oxidoreductase Fe-S binding subunit [Escherichia fergusonii ECD227]
          Length = 659

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P     +K
Sbjct: 56  CHHCEDAPCARSCPNGAISHVNDSVQVNQQKCIGCKSCVIACPFGTMQIVLSPVSAERVK 115


>gi|302556774|ref|ZP_07309116.1| nitrate reductase, beta subunit [Streptomyces griseoflavus Tu4000]
 gi|302474392|gb|EFL37485.1| nitrate reductase, beta subunit [Streptomyces griseoflavus Tu4000]
          Length = 515

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CP    Y+   +  + +  DEC    +C   CP   + 
Sbjct: 183 CEHCLNPACVSACPSGAMYKRVEDGIVLVDQDECRGWRMCVTACPYKKVY 232


>gi|296272270|ref|YP_003654901.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096445|gb|ADG92395.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 186

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V   C  C    C  VCPV     G++ + +H + CI C +C   CP  AI+P+ E
Sbjct: 52  VPNICRQCDDAPCANVCPVGALEFGKDSILVHEELCIGCKMCTLVCPFGAIRPEAE 107


>gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 630

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C   + +    I  ++CI CG C   CPV AI
Sbjct: 576 YEITDECIGC--TKCSRACPVRCISGKIKGKHIIDQEKCIKCGTCFEGCPVKAI 627


>gi|257064962|ref|YP_003144634.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792615|gb|ACV23285.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 226

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV VCP     + E+    I   +CI C  C   CP      + E  
Sbjct: 64  CQHCADPKCVAVCPTKASQKMEDGTVQIDKSKCIGCQFCVMACPYGVRYLNEEER 118


>gi|11466187|ref|NP_066510.1| NADH dehydrogenase subunit 8 [Naegleria gruberi]
 gi|10444222|gb|AAG17788.1|AF288092_13 NADH dehydrogenase subunit 8 [Naegleria gruberi]
          Length = 159

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEVVCPALAITIDSAQQLNGSRQTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMD 94
                         N EY+T      +  KK+ L +  K +
Sbjct: 115 VE----------SFNFEYSTFTHDELLYDKKKLLANGDKFE 145


>gi|323172418|gb|EFZ58055.1| nitrate reductase, beta subunit [Escherichia coli LT-68]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|320450531|ref|YP_004202627.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermus scotoductus SA-01]
 gi|320150700|gb|ADW22078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
           scotoductus SA-01]
          Length = 284

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C    CV  CP D  ++ ++ +  I  + C+ C  C P CP ++   D    
Sbjct: 123 FVPRPCMQCDEPPCVPACPYDATWKRKDGIVEIDYELCVGCEKCIPPCPYNSRHKDDGYF 182

Query: 63  LEL 65
              
Sbjct: 183 WTE 185


>gi|238878682|gb|EEQ42320.1| NADH-ubiquinone oxidoreductase subunit 8 [Candida albicans WO-1]
          Length = 244

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 142 EERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 199

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
             +T          N EY+T      +  K++ L +  K +  
Sbjct: 200 -VETP---------NVEYSTATREELLYNKEKLLENGDKWEQE 232


>gi|254474808|ref|ZP_05088194.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214029051|gb|EEB69886.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|217076475|ref|YP_002334191.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus
           TCF52B]
 gi|217036328|gb|ACJ74850.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus
           TCF52B]
          Length = 360

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C LCK   C +VCP       +  + + P++C  CG+CE  CPV AI
Sbjct: 308 VDHEKCTLCK--ICEKVCPYFAITI-DTKVHVDPNKCFGCGLCESRCPVKAI 356


>gi|16763989|ref|NP_459604.1| hydrogenase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56414251|ref|YP_151326.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62179213|ref|YP_215630.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615182|ref|YP_001589147.1| hypothetical protein SPAB_02950 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550859|ref|ZP_02344615.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168231615|ref|ZP_02656673.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168240451|ref|ZP_02665383.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168260879|ref|ZP_02682852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168465779|ref|ZP_02699661.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168818769|ref|ZP_02830769.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194444851|ref|YP_002039852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194449002|ref|YP_002044643.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194470652|ref|ZP_03076636.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197249684|ref|YP_002145585.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197262291|ref|ZP_03162365.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197363174|ref|YP_002142811.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|198245238|ref|YP_002214603.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390569|ref|ZP_03217180.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|238911563|ref|ZP_04655400.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|16419123|gb|AAL19563.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56128508|gb|AAV78014.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62126846|gb|AAX64549.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161364546|gb|ABX68314.1| hypothetical protein SPAB_02950 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403514|gb|ACF63736.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194407306|gb|ACF67525.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194457016|gb|EDX45855.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195632027|gb|EDX50547.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197094651|emb|CAR60175.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197213387|gb|ACH50784.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197240546|gb|EDY23166.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197939754|gb|ACH77087.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603014|gb|EDZ01560.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205324243|gb|EDZ12082.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205334041|gb|EDZ20805.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205340164|gb|EDZ26928.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205344169|gb|EDZ30933.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349919|gb|EDZ36550.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|261245885|emb|CBG23686.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|301157213|emb|CBW16700.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911643|dbj|BAJ35617.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|320084879|emb|CBY94669.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226189|gb|EFX51240.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713677|gb|EFZ05248.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323128928|gb|ADX16358.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326622355|gb|EGE28700.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|18976905|ref|NP_578262.1| indolepyruvate ferredoxin oxidoreductase subunit a [Pyrococcus
           furiosus DSM 3638]
 gi|18892520|gb|AAL80657.1| indolepyruvate ferredoxin oxidoreductase subunit a [Pyrococcus
           furiosus DSM 3638]
          Length = 646

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  CK       CP   +   +    + P  C  CG C   CP  A +   E
Sbjct: 587 VNEEKCTGCKVCINAYGCPAIYWDAEKKKARVDPLMCWGCGGCAQVCPFGAFEKVRE 643


>gi|194437140|ref|ZP_03069239.1| nitrate reductase 1, beta subunit [Escherichia coli 101-1]
 gi|194424123|gb|EDX40111.1| nitrate reductase 1, beta subunit [Escherichia coli 101-1]
 gi|323962601|gb|EGB58180.1| nitrate reductase [Escherichia coli H489]
 gi|323973531|gb|EGB68717.1| nitrate reductase [Escherichia coli TA007]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|68464733|ref|XP_723444.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|68465112|ref|XP_723255.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|46445282|gb|EAL04551.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|46445478|gb|EAL04746.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
          Length = 246

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 144 EERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 201

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
             +T          N EY+T      +  K++ L +  K +  
Sbjct: 202 -VETP---------NVEYSTATREELLYNKEKLLENGDKWEQE 234


>gi|325523740|gb|EGD01997.1| nitrate reductase, beta subunit [Burkholderia sp. TJI49]
          Length = 509

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|309379085|emb|CBX22216.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 279

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I     P 
Sbjct: 74  IDETACIGC--TACIRSCPADAIMGAGKFMHTVIADECTGCGLCVAPCPVDCIHMQ--PV 129

Query: 63  LELWLKINSEYA 74
            + +L     ++
Sbjct: 130 SDAFLPRARRFS 141



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|310825956|ref|YP_003958313.1| hypothetical protein ELI_0331 [Eubacterium limosum KIST612]
 gi|308737690|gb|ADO35350.1| hypothetical protein ELI_0331 [Eubacterium limosum KIST612]
          Length = 139

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +TE CI C  T C   CPV      +     ++   CIDCGVC   CP  AI  + 
Sbjct: 1  MAYTITEKCIGC--TICARNCPVMAITGEKKKQHVVNDKRCIDCGVCGRSCPQAAILDNR 58

Query: 60 EPGLEL 65
                
Sbjct: 59 GEITNK 64


>gi|255527174|ref|ZP_05394059.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296186117|ref|ZP_06854522.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509129|gb|EET85484.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296049385|gb|EFG88814.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 273

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V TE CI C   +C++ C +           I+   CI CG C   CP +A+  D  
Sbjct: 1  MMNVNTEKCIGC--GECIKDCFIRDIEMVNGKAKINNKTCIKCGHCIAICPKNAVSTDEY 58

Query: 61 PGLELWLKINSEY 73
             E+      E+
Sbjct: 59 DMKEVKEFTKEEF 71


>gi|161504217|ref|YP_001571329.1| hypothetical protein SARI_02324 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865564|gb|ABX22187.1| hypothetical protein SARI_02324 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|157963777|ref|YP_001503811.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848777|gb|ABV89276.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 227

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C  T CV+VCP    Y+      +++   +C+ C  C   CP  
Sbjct: 95  SCQHCDDTPCVKVCPTGAAYKDPKTGIVSVDEWKCVGCQYCIAACPYQ 142


>gi|159488755|ref|XP_001702368.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
 gi|34328786|gb|AAQ63697.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
 gi|158271162|gb|EDO96988.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
          Length = 231

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 129 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 186

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K++ L +  K +  
Sbjct: 187 V--EGPNFEFSTETREEL------LYDKQKLLENGDKWETE 219


>gi|85857933|ref|YP_460135.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85721024|gb|ABC75967.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 637

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C + CPV+    E +    I   +CI CGVC   C  DAI
Sbjct: 584 IDKEKCTGC--MACAKKCPVEAISGERKKAHEIDQAKCIKCGVCMETCKFDAI 634


>gi|323942440|gb|EGB38609.1| nitrate reductase [Escherichia coli E482]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|320181766|gb|EFW56676.1| Respiratory nitrate reductase beta chain [Shigella boydii ATCC
           9905]
 gi|332092266|gb|EGI97343.1| nitrate reductase, beta subunit [Shigella boydii 5216-82]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|300906862|ref|ZP_07124538.1| nitrate reductase, beta subunit [Escherichia coli MS 84-1]
 gi|301304820|ref|ZP_07210926.1| nitrate reductase, beta subunit [Escherichia coli MS 124-1]
 gi|300401361|gb|EFJ84899.1| nitrate reductase, beta subunit [Escherichia coli MS 84-1]
 gi|300839941|gb|EFK67701.1| nitrate reductase, beta subunit [Escherichia coli MS 124-1]
 gi|315254812|gb|EFU34780.1| nitrate reductase, beta subunit [Escherichia coli MS 85-1]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|260854889|ref|YP_003228780.1| nitrate reductase 1, beta subunit [Escherichia coli O26:H11 str.
           11368]
 gi|257753538|dbj|BAI25040.1| nitrate reductase 1, beta subunit [Escherichia coli O26:H11 str.
           11368]
 gi|323153236|gb|EFZ39497.1| nitrate reductase, beta subunit [Escherichia coli EPECa14]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|167622047|ref|YP_001672341.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352069|gb|ABZ74682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 195

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  +  +   + + CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDEGIVLHNKETCIGCGYCLYACPFGA 103


>gi|14521282|ref|NP_126757.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           abyssi GE5]
 gi|5458500|emb|CAB49988.1| iorA-like indolepyruvate ferredoxin oxidoreductase related protein,
           alpha and beta subunits [Pyrococcus abyssi GE5]
          Length = 613

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ E C  CK    +  C    +      + I    C  CG+C   CP DAIK   E
Sbjct: 555 IIEEKCTGCKACILLSGCQALIYDPETRKVKIDELICTGCGICNQLCPFDAIKFREE 611


>gi|187730164|ref|YP_001880008.1| nitrate reductase 1, beta subunit [Shigella boydii CDC 3083-94]
 gi|187427156|gb|ACD06430.1| nitrate reductase 1, beta subunit [Shigella boydii CDC 3083-94]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|157160735|ref|YP_001458053.1| nitrate reductase, beta subunit [Escherichia coli HS]
 gi|157066415|gb|ABV05670.1| nitrate reductase, beta subunit [Escherichia coli HS]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|330821355|ref|YP_004350217.1| respiratory nitrate reductase beta subunit [Burkholderia gladioli
           BSR3]
 gi|327373350|gb|AEA64705.1| respiratory nitrate reductase beta subunit [Burkholderia gladioli
           BSR3]
          Length = 508

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|308049209|ref|YP_003912775.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307631399|gb|ADN75701.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 182

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           T +C+ C +  C+ VCP   F   ++ L +   + C  CG+C   CP DAI  D   
Sbjct: 58  THSCMHCGNPACLMVCPAGAFTTRDDGLVVLDRERCTSCGLCVSACPYDAIAVDPRD 114


>gi|302344645|ref|YP_003809174.1| nitroreductase [Desulfarculus baarsii DSM 2075]
 gi|301641258|gb|ADK86580.1| nitroreductase [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          T +  + CI C    CV  CP   F        +    CI CG C   CP  A+
Sbjct: 7  TVIDAQKCIGC--GRCVVTCPAQAFTLAAGKSVVSGQRCILCGHCLAVCPTGAV 58


>gi|254485944|ref|ZP_05099149.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseobacter sp. GAI101]
 gi|214042813|gb|EEB83451.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseobacter sp. GAI101]
          Length = 197

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|209918470|ref|YP_002292554.1| nitrate reductase 1 beta subunit [Escherichia coli SE11]
 gi|209911729|dbj|BAG76803.1| nitrate reductase 1 beta subunit [Escherichia coli SE11]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|160896558|ref|YP_001562140.1| nitrate reductase subunit beta [Delftia acidovorans SPH-1]
 gi|160362142|gb|ABX33755.1| nitrate reductase, beta subunit [Delftia acidovorans SPH-1]
          Length = 513

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|16129188|ref|NP_415743.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|30062749|ref|NP_836920.1| nitrate reductase 1, beta subunit [Shigella flexneri 2a str. 2457T]
 gi|89108073|ref|AP_001853.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli str.
           K-12 substr. W3110]
 gi|110805232|ref|YP_688752.1| nitrate reductase 1 subunit beta [Shigella flexneri 5 str. 8401]
 gi|170080856|ref|YP_001730176.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170682579|ref|YP_001743966.1| nitrate reductase 1, beta subunit [Escherichia coli SMS-3-5]
 gi|218549083|ref|YP_002382874.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia fergusonii
           ATCC 35469]
 gi|218699935|ref|YP_002407564.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli IAI39]
 gi|238900459|ref|YP_002926255.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli BW2952]
 gi|256023097|ref|ZP_05436962.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia sp. 4_1_40B]
 gi|300939536|ref|ZP_07154193.1| nitrate reductase, beta subunit [Escherichia coli MS 21-1]
 gi|300951968|ref|ZP_07165768.1| nitrate reductase, beta subunit [Escherichia coli MS 116-1]
 gi|300955911|ref|ZP_07168247.1| nitrate reductase, beta subunit [Escherichia coli MS 175-1]
 gi|301028158|ref|ZP_07191430.1| nitrate reductase, beta subunit [Escherichia coli MS 196-1]
 gi|331652267|ref|ZP_08353286.1| nitrate reductase, beta subunit [Escherichia coli M718]
 gi|331682716|ref|ZP_08383335.1| nitrate reductase, beta subunit [Escherichia coli H299]
 gi|1346663|sp|P11349|NARH_ECOLI RecName: Full=Respiratory nitrate reductase 1 beta chain; AltName:
           Full=Nitrate reductase A subunit beta; AltName:
           Full=Quinol-nitrate oxidoreductase subunit beta
 gi|37927741|pdb|1Q16|B Chain B, Crystal Structure Of Nitrate Reductase A, Narghi, From
           Escherichia Coli
 gi|46015399|pdb|1R27|B Chain B, Crystal Structure Of Nargh Complex
 gi|46015401|pdb|1R27|D Chain D, Crystal Structure Of Nargh Complex
 gi|49259007|pdb|1SIW|B Chain B, Crystal Structure Of The Apomolybdo-Narghi
 gi|62738596|pdb|1Y5I|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a
 gi|62738599|pdb|1Y5L|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-H66y
 gi|62738602|pdb|1Y5N|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a In
           Complex With Pentachlorophenol
 gi|283135373|pdb|3IR5|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49c
 gi|283135376|pdb|3IR6|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49s
 gi|283135379|pdb|3IR7|B Chain B, Crystal Structure Of Narghi Mutant Narg-R94s
 gi|42087|emb|CAA34304.1| nitrate reductase beta subunit [Escherichia coli]
 gi|1651621|dbj|BAA36095.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli str. K12
           substr. W3110]
 gi|1787478|gb|AAC74309.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|30040997|gb|AAP16727.1| nitrate reductase 1, beta subunit [Shigella flexneri 2a str. 2457T]
 gi|110614780|gb|ABF03447.1| nitrate reductase 1, beta subunit [Shigella flexneri 5 str. 8401]
 gi|169888691|gb|ACB02398.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170520297|gb|ACB18475.1| nitrate reductase 1, beta subunit [Escherichia coli SMS-3-5]
 gi|218356624|emb|CAQ89250.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia fergusonii
           ATCC 35469]
 gi|218369921|emb|CAR17696.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli IAI39]
 gi|238861899|gb|ACR63897.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli BW2952]
 gi|260449639|gb|ACX40061.1| nitrate reductase, beta subunit [Escherichia coli DH1]
 gi|281600650|gb|ADA73634.1| Respiratory nitrate reductase 1 beta chain [Shigella flexneri
           2002017]
 gi|284921040|emb|CBG34105.1| respiratory nitrate reductase 1 beta chain [Escherichia coli 042]
 gi|299878761|gb|EFI86972.1| nitrate reductase, beta subunit [Escherichia coli MS 196-1]
 gi|300317222|gb|EFJ67006.1| nitrate reductase, beta subunit [Escherichia coli MS 175-1]
 gi|300448810|gb|EFK12430.1| nitrate reductase, beta subunit [Escherichia coli MS 116-1]
 gi|300455540|gb|EFK19033.1| nitrate reductase, beta subunit [Escherichia coli MS 21-1]
 gi|313649415|gb|EFS13846.1| nitrate reductase, beta subunit [Shigella flexneri 2a str. 2457T]
 gi|315135864|dbj|BAJ43023.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli DH1]
 gi|323964727|gb|EGB60198.1| nitrate reductase [Escherichia coli M863]
 gi|323977201|gb|EGB72288.1| nitrate reductase [Escherichia coli TW10509]
 gi|325497499|gb|EGC95358.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia fergusonii
           ECD227]
 gi|327253918|gb|EGE65547.1| nitrate reductase, beta subunit [Escherichia coli STEC_7v]
 gi|331050545|gb|EGI22603.1| nitrate reductase, beta subunit [Escherichia coli M718]
 gi|331080347|gb|EGI51526.1| nitrate reductase, beta subunit [Escherichia coli H299]
 gi|332757879|gb|EGJ88206.1| nitrate reductase, beta subunit [Shigella flexneri 4343-70]
 gi|332760320|gb|EGJ90610.1| nitrate reductase, beta subunit [Shigella flexneri K-671]
 gi|332767460|gb|EGJ97654.1| nitrate reductase, beta subunit [Shigella flexneri 2930-71]
 gi|333005065|gb|EGK24585.1| nitrate reductase, beta subunit [Shigella flexneri VA-6]
 gi|333005733|gb|EGK25251.1| nitrate reductase, beta subunit [Shigella flexneri K-218]
 gi|333007560|gb|EGK27038.1| nitrate reductase, beta subunit [Shigella flexneri K-272]
 gi|333019241|gb|EGK38528.1| nitrate reductase, beta subunit [Shigella flexneri K-304]
 gi|333019645|gb|EGK38922.1| nitrate reductase, beta subunit [Shigella flexneri K-227]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|24112624|ref|NP_707134.1| nitrate reductase 1, beta subunit [Shigella flexneri 2a str. 301]
 gi|32699532|sp|Q83RN5|NARH_SHIFL RecName: Full=Respiratory nitrate reductase 1 beta chain
 gi|24051531|gb|AAN42841.1| nitrate reductase 1, beta subunit [Shigella flexneri 2a str. 301]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|194434265|ref|ZP_03066531.1| nitrate reductase 1, beta subunit [Shigella dysenteriae 1012]
 gi|194417496|gb|EDX33599.1| nitrate reductase 1, beta subunit [Shigella dysenteriae 1012]
 gi|332098162|gb|EGJ03135.1| nitrate reductase, beta subunit [Shigella dysenteriae 155-74]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|15801456|ref|NP_287473.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 EDL933]
 gi|15830984|ref|NP_309757.1| nitrate reductase 1 beta subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|74312434|ref|YP_310853.1| nitrate reductase 1 subunit beta [Shigella sonnei Ss046]
 gi|82544320|ref|YP_408267.1| nitrate reductase 1 beta subunit [Shigella boydii Sb227]
 gi|168750789|ref|ZP_02775811.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758153|ref|ZP_02783160.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764366|ref|ZP_02789373.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771117|ref|ZP_02796124.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776880|ref|ZP_02801887.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782583|ref|ZP_02807590.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787732|ref|ZP_02812739.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168801541|ref|ZP_02826548.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170020405|ref|YP_001725359.1| nitrate reductase, beta subunit [Escherichia coli ATCC 8739]
 gi|170768240|ref|ZP_02902693.1| nitrate reductase, beta subunit [Escherichia albertii TW07627]
 gi|188492146|ref|ZP_02999416.1| nitrate reductase, beta subunit [Escherichia coli 53638]
 gi|191166650|ref|ZP_03028478.1| nitrate reductase 1, beta subunit [Escherichia coli B7A]
 gi|193069958|ref|ZP_03050906.1| nitrate reductase 1, beta subunit [Escherichia coli E110019]
 gi|195939115|ref|ZP_03084497.1| nitrate reductase, beta subunit [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808612|ref|ZP_03250949.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815799|ref|ZP_03256978.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822118|ref|ZP_03262437.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398625|ref|YP_002270160.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328234|ref|ZP_03444316.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218553781|ref|YP_002386694.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli IAI1]
 gi|218694741|ref|YP_002402408.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli 55989]
 gi|218704749|ref|YP_002412268.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli UMN026]
 gi|253773773|ref|YP_003036604.1| nitrate reductase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161310|ref|YP_003044418.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli B str.
           REL606]
 gi|254792698|ref|YP_003077535.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli O157:H7
           str. TW14359]
 gi|256018525|ref|ZP_05432390.1| nitrate reductase 1, beta (Fe-S) subunit [Shigella sp. D9]
 gi|260867632|ref|YP_003234034.1| nitrate reductase 1, beta subunit [Escherichia coli O111:H- str.
           11128]
 gi|261224958|ref|ZP_05939239.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261257184|ref|ZP_05949717.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282252|ref|YP_003499070.1| Nitrate reductase, beta subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|293404769|ref|ZP_06648761.1| respiratory nitrate reductase subunit 1 beta [Escherichia coli
           FVEC1412]
 gi|293433542|ref|ZP_06661970.1| nitrate reductase [Escherichia coli B088]
 gi|298380412|ref|ZP_06990011.1| respiratory nitrate reductase subunit 1 beta [Escherichia coli
           FVEC1302]
 gi|300816923|ref|ZP_07097143.1| nitrate reductase, beta subunit [Escherichia coli MS 107-1]
 gi|300821000|ref|ZP_07101149.1| nitrate reductase, beta subunit [Escherichia coli MS 119-7]
 gi|300899759|ref|ZP_07117982.1| nitrate reductase, beta subunit [Escherichia coli MS 198-1]
 gi|300919194|ref|ZP_07135720.1| nitrate reductase, beta subunit [Escherichia coli MS 115-1]
 gi|300926602|ref|ZP_07142382.1| nitrate reductase, beta subunit [Escherichia coli MS 182-1]
 gi|300927729|ref|ZP_07143296.1| nitrate reductase, beta subunit [Escherichia coli MS 187-1]
 gi|301025357|ref|ZP_07188916.1| nitrate reductase, beta subunit [Escherichia coli MS 69-1]
 gi|301327055|ref|ZP_07220337.1| nitrate reductase, beta subunit [Escherichia coli MS 78-1]
 gi|301646962|ref|ZP_07246802.1| nitrate reductase, beta subunit [Escherichia coli MS 146-1]
 gi|307137844|ref|ZP_07497200.1| Nitrate reductase, beta subunit [Escherichia coli H736]
 gi|307310016|ref|ZP_07589666.1| nitrate reductase, beta subunit [Escherichia coli W]
 gi|309794320|ref|ZP_07688744.1| nitrate reductase, beta subunit [Escherichia coli MS 145-7]
 gi|312971415|ref|ZP_07785590.1| nitrate reductase, beta subunit [Escherichia coli 1827-70]
 gi|331641760|ref|ZP_08342895.1| nitrate reductase, beta subunit [Escherichia coli H736]
 gi|331662630|ref|ZP_08363553.1| nitrate reductase, beta subunit [Escherichia coli TA143]
 gi|331667614|ref|ZP_08368478.1| nitrate reductase, beta subunit [Escherichia coli TA271]
 gi|331672759|ref|ZP_08373545.1| nitrate reductase, beta subunit [Escherichia coli TA280]
 gi|331677009|ref|ZP_08377705.1| nitrate reductase, beta subunit [Escherichia coli H591]
 gi|332279583|ref|ZP_08391996.1| nitrate reductase 1 beta subunit [Shigella sp. D9]
 gi|12514946|gb|AAG56085.1|AE005340_2 nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13361195|dbj|BAB35153.1| nitrate reductase 1 beta subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|73855911|gb|AAZ88618.1| nitrate reductase 1, beta subunit [Shigella sonnei Ss046]
 gi|81245731|gb|ABB66439.1| nitrate reductase 1 beta subunit [Shigella boydii Sb227]
 gi|169755333|gb|ACA78032.1| nitrate reductase, beta subunit [Escherichia coli ATCC 8739]
 gi|170123006|gb|EDS91937.1| nitrate reductase, beta subunit [Escherichia albertii TW07627]
 gi|187767793|gb|EDU31637.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015086|gb|EDU53208.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188487345|gb|EDU62448.1| nitrate reductase, beta subunit [Escherichia coli 53638]
 gi|188999962|gb|EDU68948.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354960|gb|EDU73379.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360097|gb|EDU78516.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365609|gb|EDU84025.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372553|gb|EDU90969.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189376319|gb|EDU94735.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|190903299|gb|EDV63020.1| nitrate reductase 1, beta subunit [Escherichia coli B7A]
 gi|192956711|gb|EDV87166.1| nitrate reductase 1, beta subunit [Escherichia coli E110019]
 gi|208728413|gb|EDZ78014.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732447|gb|EDZ81135.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737603|gb|EDZ85286.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160025|gb|ACI37458.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772388|gb|ACI84506.1| nitrate reductase 1 beta subunit [Escherichia coli]
 gi|209772390|gb|ACI84507.1| nitrate reductase 1 beta subunit [Escherichia coli]
 gi|209772392|gb|ACI84508.1| nitrate reductase 1 beta subunit [Escherichia coli]
 gi|209772394|gb|ACI84509.1| nitrate reductase 1 beta subunit [Escherichia coli]
 gi|209772396|gb|ACI84510.1| nitrate reductase 1 beta subunit [Escherichia coli]
 gi|217318661|gb|EEC27087.1| nitrate reductase 1, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351473|emb|CAU97181.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli 55989]
 gi|218360549|emb|CAQ98107.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli IAI1]
 gi|218431846|emb|CAR12731.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli UMN026]
 gi|242377006|emb|CAQ31730.1| nitrate reductase A, beta subunit, subunit of NarGH catalytic dimer
           of nitrate reductase A and nitrate reductase A
           [Escherichia coli BL21(DE3)]
 gi|253324817|gb|ACT29419.1| nitrate reductase, beta subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973211|gb|ACT38882.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli B str.
           REL606]
 gi|253977425|gb|ACT43095.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli
           BL21(DE3)]
 gi|254592098|gb|ACT71459.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli O157:H7
           str. TW14359]
 gi|257763988|dbj|BAI35483.1| nitrate reductase 1, beta subunit [Escherichia coli O111:H- str.
           11128]
 gi|290762125|gb|ADD56086.1| Nitrate reductase, beta subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|291324361|gb|EFE63783.1| nitrate reductase [Escherichia coli B088]
 gi|291426977|gb|EFF00004.1| respiratory nitrate reductase subunit 1 beta [Escherichia coli
           FVEC1412]
 gi|298277854|gb|EFI19368.1| respiratory nitrate reductase subunit 1 beta [Escherichia coli
           FVEC1302]
 gi|300356691|gb|EFJ72561.1| nitrate reductase, beta subunit [Escherichia coli MS 198-1]
 gi|300396075|gb|EFJ79613.1| nitrate reductase, beta subunit [Escherichia coli MS 69-1]
 gi|300413705|gb|EFJ97015.1| nitrate reductase, beta subunit [Escherichia coli MS 115-1]
 gi|300417389|gb|EFK00700.1| nitrate reductase, beta subunit [Escherichia coli MS 182-1]
 gi|300464230|gb|EFK27723.1| nitrate reductase, beta subunit [Escherichia coli MS 187-1]
 gi|300526299|gb|EFK47368.1| nitrate reductase, beta subunit [Escherichia coli MS 119-7]
 gi|300530697|gb|EFK51759.1| nitrate reductase, beta subunit [Escherichia coli MS 107-1]
 gi|300846308|gb|EFK74068.1| nitrate reductase, beta subunit [Escherichia coli MS 78-1]
 gi|301074850|gb|EFK89656.1| nitrate reductase, beta subunit [Escherichia coli MS 146-1]
 gi|306909734|gb|EFN40228.1| nitrate reductase, beta subunit [Escherichia coli W]
 gi|308122225|gb|EFO59487.1| nitrate reductase, beta subunit [Escherichia coli MS 145-7]
 gi|309701527|emb|CBJ00834.1| respiratory nitrate reductase 1 beta chain [Escherichia coli ETEC
           H10407]
 gi|310336012|gb|EFQ01212.1| nitrate reductase, beta subunit [Escherichia coli 1827-70]
 gi|315060480|gb|ADT74807.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli W]
 gi|315615926|gb|EFU96552.1| nitrate reductase, beta subunit [Escherichia coli 3431]
 gi|320176353|gb|EFW51412.1| Respiratory nitrate reductase beta chain [Shigella dysenteriae CDC
           74-1112]
 gi|320185631|gb|EFW60393.1| Respiratory nitrate reductase beta chain [Shigella flexneri CDC
           796-83]
 gi|320188020|gb|EFW62687.1| Respiratory nitrate reductase beta chain [Escherichia coli O157:H7
           str. EC1212]
 gi|320199265|gb|EFW73856.1| Respiratory nitrate reductase beta chain [Escherichia coli EC4100B]
 gi|320637379|gb|EFX07186.1| Nitrate reductase, beta subunit [Escherichia coli O157:H7 str.
           G5101]
 gi|320643241|gb|EFX12442.1| Nitrate reductase, beta subunit [Escherichia coli O157:H- str.
           493-89]
 gi|320648178|gb|EFX16854.1| Nitrate reductase, beta subunit [Escherichia coli O157:H- str. H
           2687]
 gi|320654012|gb|EFX22086.1| Nitrate reductase, beta subunit [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659491|gb|EFX27060.1| Nitrate reductase, beta subunit [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320664628|gb|EFX31779.1| Nitrate reductase, beta subunit [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323168398|gb|EFZ54079.1| nitrate reductase, beta subunit [Shigella sonnei 53G]
 gi|323179258|gb|EFZ64828.1| nitrate reductase, beta subunit [Escherichia coli 1180]
 gi|323185610|gb|EFZ70971.1| nitrate reductase, beta subunit [Escherichia coli 1357]
 gi|323378958|gb|ADX51226.1| nitrate reductase, beta subunit [Escherichia coli KO11]
 gi|323937770|gb|EGB34035.1| nitrate reductase [Escherichia coli E1520]
 gi|323947489|gb|EGB43493.1| nitrate reductase [Escherichia coli H120]
 gi|324018990|gb|EGB88209.1| nitrate reductase, beta subunit [Escherichia coli MS 117-3]
 gi|324117577|gb|EGC11483.1| nitrate reductase [Escherichia coli E1167]
 gi|326342776|gb|EGD66546.1| Respiratory nitrate reductase beta chain [Escherichia coli O157:H7
           str. 1044]
 gi|326346371|gb|EGD70108.1| Respiratory nitrate reductase beta chain [Escherichia coli O157:H7
           str. 1125]
 gi|331038558|gb|EGI10778.1| nitrate reductase, beta subunit [Escherichia coli H736]
 gi|331061052|gb|EGI33016.1| nitrate reductase, beta subunit [Escherichia coli TA143]
 gi|331065199|gb|EGI37094.1| nitrate reductase, beta subunit [Escherichia coli TA271]
 gi|331069980|gb|EGI41349.1| nitrate reductase, beta subunit [Escherichia coli TA280]
 gi|331075698|gb|EGI46996.1| nitrate reductase, beta subunit [Escherichia coli H591]
 gi|332094774|gb|EGI99818.1| nitrate reductase, beta subunit [Shigella boydii 3594-74]
 gi|332101935|gb|EGJ05281.1| nitrate reductase 1 beta subunit [Shigella sp. D9]
 gi|332342811|gb|AEE56145.1| nitrate reductase, beta subunit NarH [Escherichia coli UMNK88]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|26247551|ref|NP_753591.1| respiratory nitrate reductase 1 subunit beta [Escherichia coli
           CFT073]
 gi|91210449|ref|YP_540435.1| respiratory nitrate reductase 1 subunit beta [Escherichia coli
           UTI89]
 gi|110641457|ref|YP_669187.1| respiratory nitrate reductase 1 beta chain [Escherichia coli 536]
 gi|117623443|ref|YP_852356.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli APEC O1]
 gi|191170891|ref|ZP_03032442.1| nitrate reductase 1, beta subunit [Escherichia coli F11]
 gi|215486458|ref|YP_002328889.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli O127:H6
           str. E2348/69]
 gi|218558156|ref|YP_002391069.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli S88]
 gi|218689174|ref|YP_002397386.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli ED1a]
 gi|227886350|ref|ZP_04004155.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli 83972]
 gi|237705191|ref|ZP_04535672.1| respiratory nitrate reductase subunit 1 beta [Escherichia sp.
           3_2_53FAA]
 gi|300971865|ref|ZP_07171667.1| nitrate reductase, beta subunit [Escherichia coli MS 45-1]
 gi|300995949|ref|ZP_07181311.1| nitrate reductase, beta subunit [Escherichia coli MS 200-1]
 gi|301046880|ref|ZP_07193996.1| nitrate reductase, beta subunit [Escherichia coli MS 185-1]
 gi|306813752|ref|ZP_07447930.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli NC101]
 gi|312966467|ref|ZP_07780689.1| nitrate reductase, beta subunit [Escherichia coli 2362-75]
 gi|331657277|ref|ZP_08358239.1| nitrate reductase, beta subunit [Escherichia coli TA206]
 gi|26107953|gb|AAN80153.1|AE016760_12 Respiratory nitrate reductase 1 beta chain [Escherichia coli
           CFT073]
 gi|91072023|gb|ABE06904.1| respiratory nitrate reductase 1 beta chain [Escherichia coli UTI89]
 gi|110343049|gb|ABG69286.1| respiratory nitrate reductase 1 beta chain [Escherichia coli 536]
 gi|115512567|gb|ABJ00642.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli APEC O1]
 gi|190908623|gb|EDV68211.1| nitrate reductase 1, beta subunit [Escherichia coli F11]
 gi|215264530|emb|CAS08897.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli O127:H6
           str. E2348/69]
 gi|218364925|emb|CAR02621.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli S88]
 gi|218426738|emb|CAR07575.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli ED1a]
 gi|222033025|emb|CAP75765.1| Respiratory nitrate reductase 1 beta chain [Escherichia coli LF82]
 gi|226899948|gb|EEH86207.1| respiratory nitrate reductase subunit 1 beta [Escherichia sp.
           3_2_53FAA]
 gi|227836554|gb|EEJ47020.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli 83972]
 gi|281178413|dbj|BAI54743.1| nitrate reductase 1 beta subunit [Escherichia coli SE15]
 gi|294493125|gb|ADE91881.1| nitrate reductase 1, beta subunit [Escherichia coli IHE3034]
 gi|300301177|gb|EFJ57562.1| nitrate reductase, beta subunit [Escherichia coli MS 185-1]
 gi|300304646|gb|EFJ59166.1| nitrate reductase, beta subunit [Escherichia coli MS 200-1]
 gi|300411112|gb|EFJ94650.1| nitrate reductase, beta subunit [Escherichia coli MS 45-1]
 gi|305852883|gb|EFM53329.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli NC101]
 gi|307553282|gb|ADN46057.1| respiratory nitrate reductase 1 beta chain [Escherichia coli ABU
           83972]
 gi|307627251|gb|ADN71555.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli UM146]
 gi|312288920|gb|EFR16818.1| nitrate reductase, beta subunit [Escherichia coli 2362-75]
 gi|312945856|gb|ADR26683.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288616|gb|EFU48014.1| nitrate reductase, beta subunit [Escherichia coli MS 110-3]
 gi|315290722|gb|EFU50094.1| nitrate reductase, beta subunit [Escherichia coli MS 153-1]
 gi|315297306|gb|EFU56586.1| nitrate reductase, beta subunit [Escherichia coli MS 16-3]
 gi|320195762|gb|EFW70387.1| Respiratory nitrate reductase beta chain [Escherichia coli
           WV_060327]
 gi|323949656|gb|EGB45542.1| nitrate reductase [Escherichia coli H252]
 gi|323953918|gb|EGB49717.1| nitrate reductase [Escherichia coli H263]
 gi|324005982|gb|EGB75201.1| nitrate reductase, beta subunit [Escherichia coli MS 57-2]
 gi|324015700|gb|EGB84919.1| nitrate reductase, beta subunit [Escherichia coli MS 60-1]
 gi|331055525|gb|EGI27534.1| nitrate reductase, beta subunit [Escherichia coli TA206]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5]
 gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5]
          Length = 628

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++++ E C  C    C   CPV     + +    I  ++CI CG CE  C   AI  +
Sbjct: 572 FIISAERCKGCSK--CARNCPVGAISGQIKEPYVIDNEKCIKCGACESACAFGAIHIE 627


>gi|323704227|ref|ZP_08115806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536293|gb|EGB26065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 56

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +++T+ CI C    C   CPVD  +EG     +  D CIDCG CEP CP  AIK +
Sbjct: 1  MAHIITDECISC--GACAAECPVDAIHEGTGKYEVDADTCIDCGACEPVCPTGAIKAE 56


>gi|331646546|ref|ZP_08347649.1| nitrate reductase, beta subunit [Escherichia coli M605]
 gi|330911092|gb|EGH39602.1| respiratory nitrate reductase beta chain [Escherichia coli AA86]
 gi|331045298|gb|EGI17425.1| nitrate reductase, beta subunit [Escherichia coli M605]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|293414503|ref|ZP_06657152.1| nitrate reductase [Escherichia coli B185]
 gi|291434561|gb|EFF07534.1| nitrate reductase [Escherichia coli B185]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|284161789|ref|YP_003400412.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284011786|gb|ADB57739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 185

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C+ C    CV+VCP+   Y+ E+ +  +  D CI CG C   CP  A
Sbjct: 56  CLHCNDPLCVKVCPMKAVYKREDGIVLVDKDRCIGCGYCAFACPFGA 102


>gi|257055934|ref|YP_003133766.1| formate dehydrogenase beta subunit [Saccharomonospora viridis DSM
           43017]
 gi|256585806|gb|ACU96939.1| formate dehydrogenase beta subunit [Saccharomonospora viridis DSM
           43017]
          Length = 337

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I      
Sbjct: 158 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSACPYGVIDRREGD 214


>gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
 gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
          Length = 634

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           TY ++ E+CI C    CV+ CP+D           I P  C+ CG C   CPVD I
Sbjct: 577 TYKIIAEDCIGC--QQCVDACPIDAISGEPGEVHEIDPAACVGCGQCVDPCPVDTI 630


>gi|157162347|ref|YP_001459665.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli HS]
 gi|188493748|ref|ZP_03001018.1| glutamate synthase, small subunit [Escherichia coli 53638]
 gi|253772273|ref|YP_003035104.1| oxidoreductase Fe-S binding subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162799|ref|YP_003045907.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli B
           str. REL606]
 gi|157068027|gb|ABV07282.1| protein aegA [Escherichia coli HS]
 gi|188488947|gb|EDU64050.1| glutamate synthase, small subunit [Escherichia coli 53638]
 gi|253323317|gb|ACT27919.1| glutamate synthase, small subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974700|gb|ACT40371.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli B str. REL606]
 gi|253978866|gb|ACT44536.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli BL21(DE3)]
 gi|313848739|emb|CAQ33198.2| fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding
           subunit [Escherichia coli BL21(DE3)]
 gi|323971676|gb|EGB66905.1| glutamate synthase [Escherichia coli TA007]
          Length = 639

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|119094142|gb|ABL60972.1| anaerobic dehydrogenase iron-sulfur subunit [uncultured marine
           bacterium HF10_19P19]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPVDCFY+ +  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCTAVCPVDCFYQTDQGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|110833406|ref|YP_692265.1| respiratory nitrate reductase 1 subunit beta [Alcanivorax
           borkumensis SK2]
 gi|110646517|emb|CAL15993.1| Respiratory nitrate reductase 1 beta chain [Alcanivorax borkumensis
           SK2]
          Length = 517

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|148264001|ref|YP_001230707.1| hydrogenase 2 protein HybA [Geobacter uraniireducens Rf4]
 gi|146397501|gb|ABQ26134.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 311

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCPV    + +    +  ++  CI C  C+  C  +  K   E
Sbjct: 112 SCMHCQKPSCVSVCPVSAMTKDKVSGVVDYNKNTCIGCRYCQVACAFNIPKFQWE 166


>gi|194436857|ref|ZP_03068957.1| protein aegA [Escherichia coli 101-1]
 gi|300925134|ref|ZP_07141048.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           182-1]
 gi|312972873|ref|ZP_07787046.1| uncharacterized protein ygfT [Escherichia coli 1827-70]
 gi|194424339|gb|EDX40326.1| protein aegA [Escherichia coli 101-1]
 gi|300418736|gb|EFK02047.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           182-1]
 gi|310332815|gb|EFQ00029.1| uncharacterized protein ygfT [Escherichia coli 1827-70]
 gi|332344781|gb|AEE58115.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 644

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|317492823|ref|ZP_07951247.1| nitrate reductase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918945|gb|EFV40280.1| nitrate reductase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 519

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRSEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. SR1/5]
          Length = 623

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E CI C    C + CP      + ++   I+ D CI CG C+  C  DAI  +
Sbjct: 568 HINPEFCIGC--GKCAKNCPTGAISGKIKHPHVINNDVCIKCGSCKDNCNFDAIYVE 622


>gi|154148560|ref|YP_001406021.1| formate dehydrogenase iron-sulfur subunit [Campylobacter hominis
           ATCC BAA-381]
 gi|153804569|gb|ABS51576.1| formate dehydrogenase iron-sulfur subunit [Campylobacter hominis
           ATCC BAA-381]
          Length = 187

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           Y  T  C  C    C +VCPV CFY   + +      +CI CG C   CP  A
Sbjct: 50  YSSTLACQHCTDAPCAQVCPVKCFYIRADGIVLHDKKKCIGCGYCLYACPFGA 102


>gi|150006371|ref|YP_001301115.1| ferredoxin [Bacteroides vulgatus ATCC 8482]
 gi|254881723|ref|ZP_05254433.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|294776232|ref|ZP_06741717.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|319643688|ref|ZP_07998305.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A]
 gi|149934795|gb|ABR41493.1| electron transport complex protein RnfB [Bacteroides vulgatus ATCC
           8482]
 gi|254834516|gb|EET14825.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|294449915|gb|EFG18430.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|317384718|gb|EFV65680.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A]
          Length = 317

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +  +
Sbjct: 223 SCIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 68  KINSEYATQWPN--ITTKKESLPSAAKMDGVKQKYE 101
           ++ +  A   P   +   K   P A  +     K E
Sbjct: 281 EVPAGEAAAKPAVKVEASKVETPKAEAVKAEAPKTE 316



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCVE C  D  +         +  ++C  CG C   CP   I
Sbjct: 145 CLGC--GDCVEACQFDAIHMNPETGLPEVDEEKCTACGACSKACPRKII 191


>gi|193064822|ref|ZP_03045899.1| nitrate reductase 1, beta subunit [Escherichia coli E22]
 gi|194425952|ref|ZP_03058508.1| nitrate reductase 1, beta subunit [Escherichia coli B171]
 gi|260843520|ref|YP_003221298.1| nitrate reductase 1, beta subunit [Escherichia coli O103:H2 str.
           12009]
 gi|192927507|gb|EDV82124.1| nitrate reductase 1, beta subunit [Escherichia coli E22]
 gi|194416007|gb|EDX32273.1| nitrate reductase 1, beta subunit [Escherichia coli B171]
 gi|257758667|dbj|BAI30164.1| nitrate reductase 1, beta subunit [Escherichia coli O103:H2 str.
           12009]
 gi|323162408|gb|EFZ48263.1| nitrate reductase, beta subunit [Escherichia coli E128010]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|327398732|ref|YP_004339601.1| Indolepyruvate ferredoxin oxidoreductase [Hippea maritima DSM
           10411]
 gi|327181361|gb|AEA33542.1| Indolepyruvate ferredoxin oxidoreductase [Hippea maritima DSM
           10411]
          Length = 600

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV  + C  CK   C+    CP   F   +  + I    CI CG C   CP  AI
Sbjct: 544 YVDKDKCTGCK--VCINRFECPSLVFDASDKKVGIDVSTCIKCGQCVFSCPYGAI 596


>gi|326791483|ref|YP_004309304.1| Fe-S cluster domain protein [Clostridium lentocellum DSM 5427]
 gi|326542247|gb|ADZ84106.1| Fe-S cluster domain protein [Clostridium lentocellum DSM 5427]
          Length = 463

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 2  TYVVT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T+ VT   E CI C  TDC++ CP +      +   I  + CIDCG C   C   A
Sbjct: 3  THSVTIEKEKCIGC--TDCIKRCPTEAIRVRGSKAEIIEERCIDCGNCIRICRNGA 56


>gi|212637708|ref|YP_002314233.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212559192|gb|ACJ31646.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 559

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            C    C+  CP D     E  + I P  C   G C   CP  AI  D      +   +N
Sbjct: 195 GCN--RCLNFCPADAIASVEKKIEIDPYLCHGAGSCTNACPTGAISYDLPTPQSMHTYLN 252

Query: 71  S 71
            
Sbjct: 253 K 253



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V TE+C LC    CV  CP     +G +  A+H  E  C+ CG+C+  CP   I
Sbjct: 424 VNTESCTLC--MSCVATCPTGALTDGGDLPALHFVEQDCVQCGLCDAGCPEKVI 475


>gi|319428519|gb|ADV56593.1| surface localized dimethyl sulfoxide reductase, ferredoxin subunit,
           DmsB [Shewanella putrefaciens 200]
          Length = 225

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y  +  C  C    CV+ CP    ++   +  + I    CI C  C   CP DA + D 
Sbjct: 78  AYYASVGCNHCSEPVCVKACPTGAMHKRAKDGLVLIEESLCIGCESCSRACPYDAPQIDI 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|92113457|ref|YP_573385.1| respiratory nitrate reductase beta subunit [Chromohalobacter
           salexigens DSM 3043]
 gi|91796547|gb|ABE58686.1| respiratory nitrate reductase beta subunit [Chromohalobacter
           salexigens DSM 3043]
          Length = 519

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|116748590|ref|YP_845277.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697654|gb|ABK16842.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 260

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT-EPGLELW 66
           C  C +  CV VCP    ++  + +  +    CI C  C   CP  A   +  +P   + 
Sbjct: 121 CNHCANPPCVRVCPTKATFKSPDGITMMDFHRCIGCRYCMAGCPYGARSFNWQDPRPHIQ 180

Query: 67  LKINSEYATQWPNITTK 83
            ++N  + T+   +  K
Sbjct: 181 TELNMSFPTRERGVVEK 197


>gi|329999744|ref|ZP_08303510.1| nitrate reductase, beta subunit [Klebsiella sp. MS 92-3]
 gi|328538229|gb|EGF64376.1| nitrate reductase, beta subunit [Klebsiella sp. MS 92-3]
          Length = 514

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|296242044|ref|YP_003649531.1| dihydroorotate dehydrogenase family protein [Thermosphaera
           aggregans DSM 11486]
 gi|296094628|gb|ADG90579.1| dihydroorotate dehydrogenase family protein [Thermosphaera
           aggregans DSM 11486]
          Length = 403

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAIK 56
             V  + CI C    C +VC  D  +  E+        +   +C  CG+C   CP  AI 
Sbjct: 343 PLVDEKKCIGC--GFCQQVCDYDAVHVEESGGGKRLAVVDRTKCYGCGLCTSVCPTRAIH 400

Query: 57  PDT 59
            + 
Sbjct: 401 FEE 403


>gi|119873478|ref|YP_931485.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119674886|gb|ABL89142.1| formate dehydrogenase beta subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 278

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC+ C    C   CPV          + I+ DEC+ CG C+  CP D  K   +
Sbjct: 94  NCMHCVEAPCARACPVGAIKVTPEGAVVINRDECVGCGYCQMACPYDVPKRGDD 147


>gi|89897072|ref|YP_520559.1| hypothetical protein DSY4326 [Desulfitobacterium hafniense Y51]
 gi|89336520|dbj|BAE86115.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 460

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C   CP        N   I    C++CG+C   CP  AI     P
Sbjct: 93  YSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHAIIEYRRP 151



 Score = 33.8 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
            ++    C+ C                  C + CP        +   +I    C  CG C
Sbjct: 123 AFIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVREDRIASIAEAHCTSCGKC 182

Query: 47  EPECPVDAI 55
              CP  A+
Sbjct: 183 IISCPFGAV 191


>gi|89074879|ref|ZP_01161329.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           sp. SKA34]
 gi|90578566|ref|ZP_01234376.1| putative formate dehydrogenase, iron-sulfur subunit [Vibrio
           angustum S14]
 gi|89049276|gb|EAR54839.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           sp. SKA34]
 gi|90439399|gb|EAS64580.1| putative formate dehydrogenase, iron-sulfur subunit [Vibrio
           angustum S14]
          Length = 205

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF + E+ +     D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSQTEDGIVQHDKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFAE 114


>gi|238793594|ref|ZP_04637217.1| Hydrogenase-2 operon protein hybA [Yersinia intermedia ATCC 29909]
 gi|238727009|gb|EEQ18540.1| Hydrogenase-2 operon protein hybA [Yersinia intermedia ATCC 29909]
          Length = 342

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   P+ C  C  C   CP +  K D +  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPNICTGCRYCMVGCPFNVPKYDYDNP 172

Query: 63  LEL 65
              
Sbjct: 173 FGK 175


>gi|107103389|ref|ZP_01367307.1| hypothetical protein PaerPA_01004459 [Pseudomonas aeruginosa PACS2]
          Length = 505

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 168 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 226

Query: 59  TE 60
            +
Sbjct: 227 WK 228


>gi|296241969|ref|YP_003649456.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermosphaera aggregans DSM 11486]
 gi|296094553|gb|ADG90504.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosphaera aggregans DSM 11486]
          Length = 636

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C     +  CP            I  + C  CG+C   CP +AI     P  
Sbjct: 571 VDPEKCTGCLACVNLSACPALVLEPDSRKPVIIEELCAGCGLCASICPFNAISVANTPT- 629

Query: 64  ELWLKI 69
           + W K+
Sbjct: 630 QDWEKL 635


>gi|261346110|ref|ZP_05973754.1| dimethylsulfoxide reductase, chain B [Providencia rustigianii DSM
           4541]
 gi|282565764|gb|EFB71299.1| dimethylsulfoxide reductase, chain B [Providencia rustigianii DSM
           4541]
          Length = 205

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C +  CVE CP    ++   +  + +    C+ C  CE  CP  A + D +
Sbjct: 60  YYLSISCNHCSNPTCVEGCPTGAMHKRAEDGLVVVDQSICVGCRYCELRCPYGAPQFDEK 119


>gi|206895457|ref|YP_002246544.1| ferredoxin 2 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738074|gb|ACI17152.1| ferredoxin 2 [Coprothermobacter proteolyticus DSM 5265]
          Length = 450

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E C  C  T+C++ CP +          I    CIDCG C   CP  A
Sbjct: 15 DEEKCKGC--TNCIKRCPAEAIRVRNGKARIIDQLCIDCGECIRACPNHA 62


>gi|188587472|ref|YP_001919017.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352159|gb|ACB86429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 56

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +TE CI C    C   CP +   EGE    I  D CIDCG C   CPVDAI  +
Sbjct: 1  MAYKITEECIKC--GACEPECPTEAISEGEEMYVIDADNCIDCGACADVCPVDAIIQE 56


>gi|163858981|ref|YP_001633279.1| formate dehydrogenase, iron-sulfur subunit [Bordetella petrii DSM
           12804]
 gi|163262709|emb|CAP45012.1| Formate dehydrogenase, iron-sulfur subunit [Bordetella petrii]
          Length = 209

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  +   + D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGA 101


>gi|163736978|ref|ZP_02144396.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis BS107]
 gi|163740599|ref|ZP_02147993.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161386457|gb|EDQ10832.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161389582|gb|EDQ13933.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis BS107]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|323960817|gb|EGB56438.1| glutamate synthase [Escherichia coli H489]
          Length = 639

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.2 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|284162822|ref|YP_003401445.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012819|gb|ADB58772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 249

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+H  CV+VC     Y+ E+  + +    CI C  C   CP +A +   EP  E   
Sbjct: 105 CQECEHPGCVQVCLTQASYKREDGIVVVDLHRCIGCRYCMIACPYNARRFLFEPPEEHLT 164

Query: 68  KINSE 72
            +N E
Sbjct: 165 VVNPE 169


>gi|226940402|ref|YP_002795476.1| tetrathionate reductase subunit B [Laribacter hongkongensis HLHK9]
 gi|226715329|gb|ACO74467.1| putative tetrathionate reductase subunit B [Laribacter
           hongkongensis HLHK9]
          Length = 239

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           TY++   C  C +  C+ VCPV   ++  +  + +  + C+ C  C   CP DA  I  D
Sbjct: 88  TYMLPRLCNHCANPPCIPVCPVGATFQQADGTVVVDGERCVGCAYCVQACPYDARFINHD 147

Query: 59  T 59
           T
Sbjct: 148 T 148


>gi|283796651|ref|ZP_06345804.1| conserved domain protein [Clostridium sp. M62/1]
 gi|291076074|gb|EFE13438.1| conserved domain protein [Clostridium sp. M62/1]
 gi|295092473|emb|CBK78580.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
          [Clostridium cf. saccharolyticum K10]
 gi|295115344|emb|CBL36191.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
          [butyrate-producing bacterium SM4/1]
          Length = 56

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T+ C+ C    C   CPV    EG+    I    CIDCG C   CP  AI
Sbjct: 1  MAYVITDTCVSC--GACAGGCPVGAISEGDGKYEIDAAACIDCGACAGTCPTGAI 53


>gi|154174046|ref|YP_001408940.1| formate dehydrogenase iron-sulfur subunit [Campylobacter curvus
           525.92]
 gi|112804000|gb|EAU01344.1| formate dehydrogenase iron-sulfur subunit [Campylobacter curvus
           525.92]
          Length = 190

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           T  C  C    C +VCPVDCFY   + +      +CI C  C   CP  A
Sbjct: 53  TIACQHCTDAPCEQVCPVDCFYIRADGIVLHDKHKCIGCAYCLYACPFGA 102


>gi|157963939|ref|YP_001503973.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848939|gb|ABV89438.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ +     D CI CG C   CP  A
Sbjct: 53  ISVACMHCDDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|319957489|ref|YP_004168752.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Nitratifractor salsuginis DSM 16511]
 gi|319419893|gb|ADV47003.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Nitratifractor salsuginis DSM 16511]
          Length = 187

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C EVCP    Y  EN +  +  ++CI C  C   CP DA   D 
Sbjct: 64  CQHCDNAPCQEVCPTHATYYDENGVVRVDSNKCILCSYCMNACPYDARYVDD 115


>gi|188585282|ref|YP_001916827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349969|gb|ACB84239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 229

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 5   VTENCILCKHTDCVEVCPVD--CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +   C  C H  CVEVCP D    Y+ E+ L      ECI C  CE  CP   +  ++E 
Sbjct: 54  IPTLCNHCDHAPCVEVCPTDPKAMYKTEHGLTLHDSKECIGCRQCEDACPYGVVYFNSEK 113

Query: 62  GLELWLK 68
             E W  
Sbjct: 114 AHEFWRD 120


>gi|119871679|ref|YP_929686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673087|gb|ABL87343.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 220

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP +  Y+  + L  +    CI C  C   CP  A+  D +
Sbjct: 63  CQHCDKPYCVATCPTNALYKDRDGLVKLRESSCIGCRYCLAACPYGAVWWDEK 115


>gi|118474652|ref|YP_892674.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. fetus 82-40]
 gi|261885445|ref|ZP_06009484.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. venerealis str. Azul-94]
 gi|118413878|gb|ABK82298.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 184

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           T  C  C    C +VCPV CFY   + +     ++CI CG C   CP  A
Sbjct: 53  TIACQHCTDAPCAQVCPVSCFYIRADGIVLHDKNKCIGCGYCLYACPFGA 102


>gi|110802004|ref|YP_699826.1| [Fe] hydrogenase [Clostridium perfringens SM101]
 gi|110682505|gb|ABG85875.1| [Fe] hydrogenase [Clostridium perfringens SM101]
          Length = 490

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+ C  C    C + C  +          I  ++C +CG C+  CP +AI
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFEAINFDNRKCKIDYEKCKECGKCKEVCPYNAI 152



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 20/68 (29%)

Query: 7   ENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +                   +        I   +CI CG C  
Sbjct: 135 EKCKEC--GKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAIK 56
           +CP  AI 
Sbjct: 193 DCPFGAIM 200


>gi|293607054|ref|ZP_06689397.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553]
 gi|292814544|gb|EFF73682.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553]
          Length = 416

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CPVD      N   + PD C  C  C P CP  +I  
Sbjct: 15 IDPEICIRCN--TCEETCPVDAITHDSNNYVVDPDICNGCMACVPPCPTGSIDN 66


>gi|259416768|ref|ZP_05740688.1| formate dehydrogenase iron-sulfur subunit [Silicibacter sp.
           TrichCH4B]
 gi|259348207|gb|EEW59984.1| formate dehydrogenase iron-sulfur subunit [Silicibacter sp.
           TrichCH4B]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|238894924|ref|YP_002919658.1| cryptic nitrate reductase 2 beta subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238547240|dbj|BAH63591.1| cryptic nitrate reductase 2 beta subunit [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 514

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|239617465|ref|YP_002940787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506296|gb|ACR79783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
          Length = 354

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +V E NC+ C    C   CPV      E    I  D CI CG C   C   A+ P  +  
Sbjct: 188 IVKEVNCVAC--GMCERHCPVGAITI-EGVARIDYDICIGCGQCIAMCNYGAMVPKWDSS 244

Query: 63  LELWLKINSEYAT 75
            EL  K   EYA 
Sbjct: 245 TELLSKKMVEYAK 257


>gi|167770888|ref|ZP_02442941.1| hypothetical protein ANACOL_02241 [Anaerotruncus colihominis DSM
          17241]
 gi|167666928|gb|EDS11058.1| hypothetical protein ANACOL_02241 [Anaerotruncus colihominis DSM
          17241]
          Length = 437

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C  C +  CV+ CP +          I  + CIDCG C   CP  A +   +P
Sbjct: 15 DKCHGCIN--CVKRCPTEAIRVRGGKAKIIKERCIDCGECIRVCPHHAKQAIFDP 67


>gi|152970433|ref|YP_001335542.1| cryptic nitrate reductase 2 beta subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955282|gb|ABR77312.1| cryptic nitrate reductase 2 beta subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 514

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|157963943|ref|YP_001503977.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848943|gb|ABV89442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ +     D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|322658911|gb|EFY55165.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|323243568|gb|EGA27587.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
          Length = 142

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|312222247|emb|CBY02187.1| hypothetical protein [Leptosphaeria maculans]
          Length = 230

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 128 EERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAI 185

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT      +  K++ L +  K +  
Sbjct: 186 VEGP----------NTEYATTTREELLYNKEKLLSNGDKWEPE 218


>gi|304310963|ref|YP_003810561.1| Nitrate reductase, beta subunit [gamma proteobacterium HdN1]
 gi|301796696|emb|CBL44908.1| Nitrate reductase, beta subunit [gamma proteobacterium HdN1]
          Length = 510

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|288819038|ref|YP_003433386.1| sulfur reductase subunit B [Hydrogenobacter thermophilus TK-6]
 gi|288788438|dbj|BAI70185.1| sulfur reductase subunit B [Hydrogenobacter thermophilus TK-6]
 gi|308752621|gb|ADO46104.1| sulfur reductase beta subunit [Hydrogenobacter thermophilus TK-6]
          Length = 232

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 1   MTYVVTE-----------NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCE 47
           MTY V E           +C+ C+   CV VCP    Y+ E    + ++ D+CI C +C 
Sbjct: 54  MTYEVGEFPNTQVFHLPKSCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCS 113

Query: 48  PECPVDAIKPDTEPGLEL 65
             CP    + D    +  
Sbjct: 114 WSCPYGCREFDEADKVMK 131


>gi|254458516|ref|ZP_05071941.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207084824|gb|EDZ62111.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 202

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCP DCFY  E+ +     ++CI C  C   CP  A
Sbjct: 58  ACMHCTDAPCEQVCPTDCFYIREDGIVLHDKEKCIGCAYCLYACPFGA 105


>gi|167622055|ref|YP_001672349.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352077|gb|ABZ74690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ +     D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|167622051|ref|YP_001672345.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352073|gb|ABZ74686.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ +     D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|78044780|ref|YP_361471.1| putative sulfite reductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996895|gb|ABB15794.1| putative sulfite reductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 302

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + ENC  C    C ++CPV+     +  +++  + CI CG C   CP +A
Sbjct: 173 IKENCTAC--GLCTKICPVNAITLNQQEISVDYEVCIGCGDCVKACPFEA 220


>gi|57505242|ref|ZP_00371171.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Campylobacter upsaliensis RM3195]
 gi|315639207|ref|ZP_07894369.1| formate dehydrogenase, oxidoreductase [Campylobacter upsaliensis
           JV21]
 gi|57016378|gb|EAL53163.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Campylobacter upsaliensis RM3195]
 gi|315480533|gb|EFU71175.1| formate dehydrogenase, oxidoreductase [Campylobacter upsaliensis
           JV21]
          Length = 213

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + +     + CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCAIVCPVDCFYIRGDGVVLHDKEICIGCGYCLYACPFGA 112


>gi|152965569|ref|YP_001361353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
 gi|151360086|gb|ABS03089.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 376

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I      
Sbjct: 200 CKHCTHAACLDVCPTGALFRTEFGTVVVQQDVCNGCGYCVSACPYGVIDKRESD 253


>gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 599

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  E C+ C  T C  VCPV+           I P+ C  CG C   C   AI   + 
Sbjct: 544 IDKEKCVGC--TACSRVCPVEAISGSVRKPHEIDPEICTRCGSCLAVCRFGAISKVSP 599



 Score = 33.4 bits (75), Expect = 10.0,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           CP     +    + I  ++C+ C  C   CPV+AI        E+  +I
Sbjct: 531 CPAKKC-KSLTRVVIDKEKCVGCTACSRVCPVEAISGSVRKPHEIDPEI 578


>gi|302501279|ref|XP_003012632.1| hypothetical protein ARB_01245 [Arthroderma benhamiae CBS 112371]
 gi|302665888|ref|XP_003024550.1| hypothetical protein TRV_01262 [Trichophyton verrucosum HKI 0517]
 gi|291176191|gb|EFE31992.1| hypothetical protein ARB_01245 [Arthroderma benhamiae CBS 112371]
 gi|291188609|gb|EFE43939.1| hypothetical protein TRV_01262 [Trichophyton verrucosum HKI 0517]
 gi|326473101|gb|EGD97110.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326477944|gb|EGE01954.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 216

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 114 EERCIACKL--CEAICPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 171

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 172 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 204


>gi|283786092|ref|YP_003365957.1| oxidoreductase [Citrobacter rodentium ICC168]
 gi|282949546|emb|CBG89161.1| oxidoreductase [Citrobacter rodentium ICC168]
          Length = 652

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P     +K
Sbjct: 56  CRHCEDAPCARSCPNGAISHLNDSVQVNQQKCIGCKSCVVACPFGTMQIVLTPVARDKVK 115


>gi|269139711|ref|YP_003296412.1| hydrogenase 2 protein [Edwardsiella tarda EIB202]
 gi|267985372|gb|ACY85201.1| hydrogenase 2 protein [Edwardsiella tarda EIB202]
 gi|304559580|gb|ADM42244.1| Hydrogenase-2 operon protein hybA precursor [Edwardsiella tarda
           FL6-60]
          Length = 327

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D 
Sbjct: 109 IKKQCMHCVDPNCVSVCPVSALRKDPKTGIVTYDPDVCTGCRYCMVACPFDVPKYDY 165


>gi|258513409|ref|YP_003189631.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777114|gb|ACV61008.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 589

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 2   TYVV-TENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            YVV  + C  CK   C  + CP   F + E    I    C+ CG+C   C   A++   
Sbjct: 528 PYVVDPDVCKGCK--QCQRLGCPAMSFNKLEKKAVIDIITCVGCGLCVQICKHGALRQGG 585

Query: 60  E 60
           E
Sbjct: 586 E 586


>gi|298530409|ref|ZP_07017811.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509783|gb|EFI33687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 241

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y     C  C++  CV  CP    ++ E  +    P++CI C  C   CP   I      
Sbjct: 52  YYRPTLCNHCENAPCVRGCPTRALHKVEGGITAHDPNKCIGCRYCLVNCPYGVINYTWNK 111

Query: 62  GLELW 66
               W
Sbjct: 112 PHREW 116


>gi|206577007|ref|YP_002238306.1| nitrate reductase 2, beta subunit [Klebsiella pneumoniae 342]
 gi|206566065|gb|ACI07841.1| nitrate reductase 2, beta subunit [Klebsiella pneumoniae 342]
          Length = 514

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|197287376|ref|YP_002153248.1| respiratory nitrate reductase 1 subunit beta [Proteus mirabilis
           HI4320]
 gi|227358385|ref|ZP_03842725.1| respiratory nitrate reductase 1 beta chain [Proteus mirabilis ATCC
           29906]
 gi|194684863|emb|CAR47000.1| respiratory nitrate reductase 1 beta chain [Proteus mirabilis
           HI4320]
 gi|227161421|gb|EEI46465.1| respiratory nitrate reductase 1 beta chain [Proteus mirabilis ATCC
           29906]
          Length = 517

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 175 MMYL-PRLCEHCLNPACVATCPSGAIYKRAEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 233

Query: 59  TE 60
            +
Sbjct: 234 WK 235


>gi|163747832|ref|ZP_02155170.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161378904|gb|EDQ03335.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 654

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 3   YVVTEN--C-------ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           YV TE   C         C  T C+++CP        + + + P  C  CG C   CP  
Sbjct: 266 YVRTEPLLCAHSRAGQTGC--TACLDLCPTGAIVPDGDHVTVDPMICAGCGACSSACPSG 323

Query: 54  AIKPDTEPGL 63
           AI  D  P  
Sbjct: 324 AISYDAPPVD 333



 Score = 37.7 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV +CP            L    D C+ CG+CE  CP DAI
Sbjct: 502 VDKDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCEHICPEDAI 553


>gi|310777828|ref|YP_003966161.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747151|gb|ADO81813.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 334

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C    CV  CPVD      N   I P++CI CG+C  +CP +AI  + +   +  +
Sbjct: 217 ACIGC--GVCVRACPVDAIDLNNNLAKIDPEKCIQCGLCAIKCPTNAITSEVKEIKKAEI 274



 Score = 41.5 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  E CI C    C   CP +      +      I  ++CI C  C   CPVDAI+ + +
Sbjct: 242 IDPEKCIQC--GLCAIKCPTNAITSEVKEIKKAEIIEEKCIGCTACARVCPVDAIEGEVK 299

Query: 61  PGLE 64
              +
Sbjct: 300 QKHK 303



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 14  HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
           + DC  VCPVD     +  +  I+ D+C+ C  C  ECP   I  
Sbjct: 146 YGDCAAVCPVDAITITDKGVAVINEDKCVSCEKCVKECPKRVISM 190


>gi|297564729|ref|YP_003683701.1| nitrate reductase subunit beta [Meiothermus silvanus DSM 9946]
 gi|296849178|gb|ADH62193.1| nitrate reductase, beta subunit [Meiothermus silvanus DSM 9946]
          Length = 502

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + ++ ++C    +C   CP   +  + 
Sbjct: 184 CNHCLNPSCVAACPSGAIYKRAEDGVVLVNENKCKGWRMCVAACPYKKVFYNW 236


>gi|163858141|ref|YP_001632439.1| nitrate reductase beta chain [Bordetella petrii DSM 12804]
 gi|163261869|emb|CAP44171.1| nitrate reductase beta chain [Bordetella petrii]
          Length = 516

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|118591778|ref|ZP_01549174.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614]
 gi|118435771|gb|EAV42416.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614]
          Length = 654

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C+++CP        + +++    C  CG C   CP  AI  D  P    + ++
Sbjct: 280 TGC--TRCLDLCPTGAITPDGDHVSVDTMVCAGCGSCSAVCPSGAISYDAPPVSNTFQRL 337

Query: 70  NSEYATQWPNIT 81
               A  W  ++
Sbjct: 338 -QTLAATWRKLS 348



 Score = 34.6 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C LC    CV +CP     E      L    D C+ CG+C   CP  A+  D
Sbjct: 504 DACTLCL--SCVSLCPSGALKENPDAPQLRFQEDACLQCGICTTICPEKALSLD 555


>gi|254974516|ref|ZP_05270988.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26]
 gi|255313641|ref|ZP_05355224.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55]
 gi|255516325|ref|ZP_05384001.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34]
 gi|255649424|ref|ZP_05396326.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79]
 gi|260682592|ref|YP_003213877.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260686192|ref|YP_003217325.1| iron-dependent hydrogenase [Clostridium difficile R20291]
 gi|306519505|ref|ZP_07405852.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58]
 gi|260208755|emb|CBA61611.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260212208|emb|CBE02900.1| iron-dependent hydrogenase [Clostridium difficile R20291]
          Length = 498

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C E C             I+ D C  CG+C+  C  DAI
Sbjct: 107 FTVTELCRGCLAHRCKEACKFGAISYINGRAYINHDLCKACGMCKSSCQYDAI 159



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFY--EGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C  VCP              IH D CI+CG 
Sbjct: 137 AYINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGA 196

Query: 46  CEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
           C   CP  AI   +   P  +   K  + YA   P IT + +S
Sbjct: 197 CISACPFGAISDKSLIAPVAKKLAKKENMYAIVAPAITGQIDS 239


>gi|14590634|ref|NP_142702.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           horikoshii OT3]
 gi|6685560|sp|O58495|IORA_PYRHO RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|3257173|dbj|BAA29856.1| 648aa long hypothetical indolepyruvate ferredoxin oxidoreductase
           alpha subunit [Pyrococcus horikoshii OT3]
          Length = 648

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  CK       CP   +   +    + P  C  CG C   CP  A +   E
Sbjct: 589 VNEEKCTGCKICINAYGCPAIYWDAEKKKARVDPLMCWGCGGCAQVCPFGAFEKVRE 645


>gi|134291081|ref|YP_001114850.1| respiratory nitrate reductase beta subunit [Burkholderia
           vietnamiensis G4]
 gi|134134270|gb|ABO58595.1| respiratory nitrate reductase beta subunit [Burkholderia
           vietnamiensis G4]
          Length = 509

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|320527824|ref|ZP_08028992.1| 4Fe-4S binding domain protein [Solobacterium moorei F0204]
 gi|320131761|gb|EFW24323.1| 4Fe-4S binding domain protein [Solobacterium moorei F0204]
          Length = 254

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V++ CI C  T C + CPV      EN      +EC  C  C   CP  AI  
Sbjct: 185 VSDACIGC--TLCAKKCPVTAIEMRENKPVWVKEECTMCLGCLHRCPKHAIFY 235


>gi|294638102|ref|ZP_06716360.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
 gi|291088757|gb|EFE21318.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
          Length = 212

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           +C  C    C++VCP    Y  ++  + I    C+ CG C   CP  A
Sbjct: 88  SCQHCDPAPCLDVCPSGATYRDQHGLIQIDAQRCLGCGYCISACPYQA 135


>gi|296137382|ref|YP_003644624.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|294341676|emb|CAZ90095.1| formate dehydrogenase iron-sulfur subunit [Thiomonas sp. 3As]
 gi|295797504|gb|ADG32294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 210

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV CFY     +     D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVSCFYRTPEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|57169093|ref|ZP_00368220.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter coli
           RM2228]
 gi|305432302|ref|ZP_07401465.1| formate dehydrogenase [Campylobacter coli JV20]
 gi|57019551|gb|EAL56242.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter coli
           RM2228]
 gi|304444650|gb|EFM37300.1| formate dehydrogenase [Campylobacter coli JV20]
          Length = 213

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + +     + CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCAIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|333028872|ref|ZP_08456936.1| putative Fe-S-cluster-containing hydrogenase, HybA [Streptomyces
           sp. Tu6071]
 gi|332748724|gb|EGJ79165.1| putative Fe-S-cluster-containing hydrogenase, HybA [Streptomyces
           sp. Tu6071]
          Length = 267

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+     
Sbjct: 78  SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIEQREGD 134


>gi|326428756|gb|EGD74326.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Salpingoeca sp. ATCC
           50818]
          Length = 209

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 107 EERCIACKL--CEAICPAQAITIETVPREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 164

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQK 99
                         N EY+T+     +  K + L +  K +   QK
Sbjct: 165 VEGP----------NFEYSTETHQELLYNKDKLLANGDKWEVEIQK 200


>gi|322832975|ref|YP_004213002.1| glutamate synthase, small subunit [Rahnella sp. Y9602]
 gi|321168176|gb|ADW73875.1| glutamate synthase, small subunit [Rahnella sp. Y9602]
          Length = 659

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCP + F    + + +  + CI C  C   CP  AI
Sbjct: 55  CRQCEDAPCLQVCPTNAFVRRNDSIQLLEERCIGCKTCAVACPFGAI 101


>gi|304316572|ref|YP_003851717.1| Fe-S cluster domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302778074|gb|ADL68633.1| Fe-S cluster domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 436

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + C  C  T+C++ CP +     +    I  ++CIDCG C   CP  A    T+    
Sbjct: 9  DKDRCKGC--TNCIKRCPTEAIRVRDGKAKIIKEKCIDCGECVRVCPYHAKIVVTDDTEM 66



 Score = 33.8 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDC 25
          ++ E CI C   +CV VCP   
Sbjct: 37 IIKEKCIDC--GECVRVCPYHA 56


>gi|126698471|ref|YP_001087368.1| iron-dependent hydrogenase [Clostridium difficile 630]
 gi|255100006|ref|ZP_05328983.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42]
 gi|255305893|ref|ZP_05350065.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255]
 gi|115249908|emb|CAJ67727.1| putative iron-dependent hydrogenase [Clostridium difficile]
          Length = 498

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C E C             I+ D C  CG+C+  C  DAI
Sbjct: 107 FTVTELCRGCLAHRCKEACKFGAISYINGRAYINHDLCKACGMCKSSCQYDAI 159



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFY--EGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C  VCP              IH D CI+CG 
Sbjct: 137 AYINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGA 196

Query: 46  CEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
           C   CP  AI   +   P  +   K  + YA   P IT + +S
Sbjct: 197 CMSACPFGAISDKSLIAPVAKKLAKKENMYAIVAPAITGQIDS 239


>gi|238799029|ref|ZP_04642489.1| Hydrogenase-2 operon protein hybA [Yersinia mollaretii ATCC 43969]
 gi|238717126|gb|EEQ08982.1| Hydrogenase-2 operon protein hybA [Yersinia mollaretii ATCC 43969]
          Length = 346

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   P+ C  C  C   CP +  K D +  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPNVCTGCRYCMVGCPFNVPKYDYDNP 172

Query: 63  LEL 65
              
Sbjct: 173 FGK 175


>gi|219667057|ref|YP_002457492.1| hydrogenase large subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
 gi|219537317|gb|ACL19056.1| hydrogenase large subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C   CP        N   I    C++CG+C   CP  AI     P
Sbjct: 87  YSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHAIIEYRRP 145



 Score = 33.4 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
            ++    C+ C                  C + CP        +   +I    C  CG C
Sbjct: 117 AFIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVREDRIASIAEAHCTSCGKC 176

Query: 47  EPECPVDAI 55
              CP  A+
Sbjct: 177 IISCPFGAV 185


>gi|298375410|ref|ZP_06985367.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267910|gb|EFI09566.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 301

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LEL 65
            CI C    CV+VCP       E  +  +   C  CG C   CP  A++         E+
Sbjct: 51  KCIGC--GACVDVCPTGALTLTEAGIVTNRSLCRTCGRCAEVCPTLAMEMSGREYSIDEV 108

Query: 66  WLKINSE 72
             +I  E
Sbjct: 109 MREIEKE 115


>gi|255282942|ref|ZP_05347497.1| conserved domain protein [Bryantella formatexigens DSM 14469]
 gi|255266481|gb|EET59686.1| conserved domain protein [Bryantella formatexigens DSM 14469]
          Length = 56

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C + CP     EG+    I  D C++CG CE ECP  AI  +
Sbjct: 1  MAYVISDECVSC--GTCADACPAGAISEGDGKYVIDADACLECGTCESECPTGAISAE 56


>gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
 gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
          Length = 633

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y++  E C  C    C   CPV       +    I  D+CI CG CE  C   AI  + 
Sbjct: 577 YIISPERCKGCSK--CARNCPVGAISGRIKEPFVIDNDKCIKCGACESSCAFGAIHIEE 633


>gi|154498291|ref|ZP_02036669.1| hypothetical protein BACCAP_02280 [Bacteroides capillosus ATCC
          29799]
 gi|150272838|gb|EDN00007.1| hypothetical protein BACCAP_02280 [Bacteroides capillosus ATCC
          29799]
          Length = 503

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V  E C  C    C + CP+D  +  E    +  ++C +CGVC   C   AI
Sbjct: 1  MVIVNLEACKGC--MICEKNCPLDAVHVVERKAVVDAEKCCECGVCTRVCKFGAI 53


>gi|145591183|ref|YP_001153185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282951|gb|ABP50533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 284

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVD 53
           NC+ C    C   CPV      GE  + I+ DECI CG CE  CP D
Sbjct: 94  NCLHCVAAPCARACPVGAIKVTGEGAVVINRDECIGCGYCETACPYD 140


>gi|74317422|ref|YP_315162.1| respiratory nitrate reductase subunit beta [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056917|gb|AAZ97357.1| nitrate reductase, beta subunit [Thiobacillus denitrificans ATCC
           25259]
          Length = 522

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  + E
Sbjct: 182 CNHCLNPACVAACPSGSIYKREEDGIVLVDQDKCRGWRMCISSCPYKKVFYNWE 235


>gi|84385415|ref|ZP_00988447.1| tetrathionate reductase, subunit B [Vibrio splendidus 12B01]
 gi|84380012|gb|EAP96863.1| tetrathionate reductase, subunit B [Vibrio splendidus 12B01]
          Length = 278

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C++VCPV   ++ E+ +  +  + C+ C  C   CP DA   + +
Sbjct: 112 CNHCDNAPCIKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDARFINND 164


>gi|83855227|ref|ZP_00948757.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. NAS-14.1]
 gi|83941749|ref|ZP_00954211.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. EE-36]
 gi|83843070|gb|EAP82237.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. NAS-14.1]
 gi|83847569|gb|EAP85444.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. EE-36]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDDGIVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|89893344|ref|YP_516831.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219666616|ref|YP_002457051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89332792|dbj|BAE82387.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219536876|gb|ACL18615.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 189

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
            ++  C  C++ +C+ VCPV  + + E+ + I   + CI C +C   CP D
Sbjct: 54  FISVACNHCQNPECLRVCPVKAYTKREDGIVIHDQERCIGCKLCTMACPYD 104


>gi|310657519|ref|YP_003935240.1| thiamine pyrophosphate protein domain-containing protein
           [Clostridium sticklandii DSM 519]
 gi|308824297|emb|CBH20335.1| Thiamine pyrophosphate protein domain protein TPP-binding
           [Clostridium sticklandii]
          Length = 593

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CI CK   C+   CP   F +     +I PD C+ C VC   CPV AI
Sbjct: 538 VDTDKCIGCK--ACIRTGCPAISFDKDNKKSSISPDSCVGCEVCLQVCPVKAI 588


>gi|217977674|ref|YP_002361821.1| nitrate reductase, beta subunit [Methylocella silvestris BL2]
 gi|217503050|gb|ACK50459.1| nitrate reductase, beta subunit [Methylocella silvestris BL2]
          Length = 504

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C  VCP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAAVCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|126739787|ref|ZP_01755478.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. SK209-2-6]
 gi|126719019|gb|EBA15730.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. SK209-2-6]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|11466585|ref|NP_066475.1| NADH dehydrogenase subunit 8 [Rhodomonas salina]
 gi|10444172|gb|AAG17746.1|AF288090_22 NADH dehydrogenase subunit 8 [Rhodomonas salina]
          Length = 162

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAQAITIETESRADNSRKTSRYDIDMTKCIFCGLCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                    ++ + N         I  K++ L +  + +
Sbjct: 118 VEGPNYEYSVFKRQN--------LIYNKEKLLKNGDQWE 148


>gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
 gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
          Length = 632

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+ E+ C  C  T C + CPV     E +    I  + CI CG C   C   AI
Sbjct: 574 FVIDESLCKGC--TACAKACPVGAISGEKKAPHTIDTERCIRCGACMATCRFGAI 626



 Score = 35.3 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           + CPV       +F  I    C  C  C   CPV AI  + +    +  +
Sbjct: 561 KRCPVGACKALSDF-VIDESLCKGCTACAKACPVGAISGEKKAPHTIDTE 609


>gi|256830105|ref|YP_003158833.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579281|gb|ACU90417.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 251

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C +  CV+ CP    Y+      + ++   CI CG C   CP  A     +
Sbjct: 60  CMHCDNPTCVQACPSGATYKDPQNGIVHVNEALCIGCGNCITACPYGARFRHPD 113


>gi|225028997|ref|ZP_03718189.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353]
 gi|224953695|gb|EEG34904.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353]
          Length = 506

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C+EVCP              I  D CI CG C   C  +AI     P
Sbjct: 116 VTDGCQGCLAHPCMEVCPKKAISLDRVTGKSIIDQDACIKCGRCATVCSYNAIIVQERP 174



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEP 48
           +  + CI C                  C + C +      EN    I  D+C+ CG+C  
Sbjct: 148 IDQDACIKCGRCATVCSYNAIIVQERPCAKACGMKAITSDENGKATIDYDKCVSCGMCLV 207

Query: 49  ECPVDAI 55
            CP  AI
Sbjct: 208 NCPFGAI 214


>gi|221215732|ref|ZP_03588693.1| nitrate reductase, beta subunit [Burkholderia multivorans CGD1]
 gi|221164434|gb|EED96919.1| nitrate reductase, beta subunit [Burkholderia multivorans CGD1]
          Length = 511

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|46200990|ref|ZP_00055996.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D
Sbjct: 76  SCLHCEEPPCVPVCPTGASYKREEDGIVLVDYDKCIGCKYCSWSCPYGAREFD 128


>gi|313650921|gb|EFS15321.1| protein aegA [Shigella flexneri 2a str. 2457T]
 gi|332755105|gb|EGJ85470.1| protein aegA [Shigella flexneri 4343-70]
 gi|332755505|gb|EGJ85869.1| protein aegA [Shigella flexneri K-671]
          Length = 636

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 85


>gi|310791703|gb|EFQ27230.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001]
          Length = 226

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 124 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 181

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 182 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 214


>gi|291280537|ref|YP_003497372.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
 gi|290755239|dbj|BAI81616.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
          Length = 56

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+T+ C  C    C + CPV    EG+    I PD C DCG C   CPVDAI
Sbjct: 1  MAHVITDECTNC--GACEDECPVGAISEGDGKRVIDPDTCTDCGACAEVCPVDAI 53


>gi|210620595|ref|ZP_03292143.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275]
 gi|210155309|gb|EEA86315.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275]
          Length = 211

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ CI C    C+EVCP +C  E     N + I+   C+ CG C   CPV+AI
Sbjct: 154 YFVTDKCINC--GRCIEVCPQNCIVEDQKNWNQVKINHLNCLSCGNCVEVCPVEAI 207


>gi|238784803|ref|ZP_04628805.1| hypothetical protein yberc0001_7880 [Yersinia bercovieri ATCC
           43970]
 gi|238714316|gb|EEQ06326.1| hypothetical protein yberc0001_7880 [Yersinia bercovieri ATCC
           43970]
          Length = 680

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 24/65 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE       +
Sbjct: 62  CHHCEDAPCASTCPNGAIVEINNSVQVIQEKCIGCKTCIIACPFGMMMVVTETVQPASHR 121

Query: 69  INSEY 73
           +   Y
Sbjct: 122 LADAY 126



 Score = 33.4 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           V+ E CI CK   C+  CP          +
Sbjct: 88  VIQEKCIGCK--TCIIACPFGMMMVVTETV 115


>gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ + CI C    C + CPVD            I P++CI CG C  +CP D I   + P
Sbjct: 570 VLEDQCIAC--GICAKACPVDAISGERKKPPYKIDPEKCIRCGACMEKCPKDVIIRGSIP 627

Query: 62  GLEL 65
           G + 
Sbjct: 628 GFKA 631


>gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7]
 gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7]
          Length = 599

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C + CPV       G+    I  ++CI CG C   C  + I
Sbjct: 545 IDEDKCRKC--GLCAKQCPVGAISGELGKVPYVIDQEKCIKCGQCIKACHFNVI 596


>gi|77919167|ref|YP_356982.1| indolepyruvate oxidoreductase subunit alpha [Pelobacter
           carbinolicus DSM 2380]
 gi|77545250|gb|ABA88812.1| indolepyruvate oxidoreductase, alpha subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 588

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E C  CK   C+++ CP   +      +    I+P  C  CG+C   C  DAI   +
Sbjct: 529 VDAEKCTGCK--ACLQLGCPAIEWQPDAGDKGKAVINPLLCCGCGLCPQMCHFDAIGGHS 586

Query: 60  E 60
           E
Sbjct: 587 E 587


>gi|307545443|ref|YP_003897922.1| respiratory nitrate reductase subunit beta [Halomonas elongata DSM
           2581]
 gi|307217467|emb|CBV42737.1| respiratory nitrate reductase, subunit beta [Halomonas elongata DSM
           2581]
          Length = 521

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|269215431|ref|ZP_06159285.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Slackia exigua ATCC 700122]
 gi|269130918|gb|EEZ61993.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Slackia exigua ATCC 700122]
          Length = 205

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C++  C +VCP    Y+ +   + I  D+CI C +C   CP +A   +      
Sbjct: 64  ACQHCENPACKKVCPTGATYKDDAGRVEIAYDKCIGCRMCMAACPYNARVFNWNEPER 121


>gi|254691280|ref|ZP_05154534.1| NarH, respiratory nitrate reductase, beta subunit [Brucella abortus
           bv. 6 str. 870]
 gi|254715209|ref|ZP_05177020.1| NarH, respiratory nitrate reductase, beta subunit [Brucella ceti
           M13/05/1]
          Length = 509

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 173 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 231

Query: 59  T 59
            
Sbjct: 232 W 232


>gi|224824907|ref|ZP_03698013.1| nitrate reductase, beta subunit [Lutiella nitroferrum 2002]
 gi|224602578|gb|EEG08755.1| nitrate reductase, beta subunit [Lutiella nitroferrum 2002]
          Length = 519

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|153953876|ref|YP_001394641.1| hypothetical protein CKL_1251 [Clostridium kluyveri DSM 555]
 gi|219854491|ref|YP_002471613.1| hypothetical protein CKR_1148 [Clostridium kluyveri NBRC 12016]
 gi|146346757|gb|EDK33293.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219568215|dbj|BAH06199.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 273

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            +NC  CK   CV VCP+      +  ++     CI CG C  +CP  A   D E  L  
Sbjct: 200 NDNCTDCK--ICVNVCPMGSIDFKD--VSKLNGICIKCGACIKKCPHGAKYYDDEDYLRH 255

Query: 66  WLKINSEYA 74
             ++  E+A
Sbjct: 256 KYELEIEFA 264


>gi|161522417|ref|YP_001585346.1| nitrate reductase, beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189348707|ref|YP_001941903.1| nitrate reductase 1 beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|160345970|gb|ABX19054.1| nitrate reductase, beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189338845|dbj|BAG47913.1| nitrate reductase 1 beta subunit [Burkholderia multivorans ATCC
           17616]
          Length = 511

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|114763304|ref|ZP_01442728.1| formate dehydrogenase, iron-sulfur subunit, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114544102|gb|EAU47112.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. HTCC2601]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|56696671|ref|YP_167032.1| formate dehydrogenase, iron-sulfur subunit, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56678408|gb|AAV95074.1| formate dehydrogenase, iron-sulfur subunit, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|39995884|ref|NP_951835.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens PCA]
 gi|39982648|gb|AAR34108.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens PCA]
 gi|298504898|gb|ADI83621.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens KN400]
          Length = 277

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
            E C+ C    C  VCPV  F +      + H  +CI C  C   CP    K + 
Sbjct: 81  KEMCMHCNDPACASVCPVGAFEKTAEGPVVYHSKKCIGCRFCMVACPFGIPKYEW 135


>gi|319942524|ref|ZP_08016834.1| hypothetical protein HMPREF9464_02053 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803927|gb|EFW00845.1| hypothetical protein HMPREF9464_02053 [Sutterella wadsworthensis
           3_1_45B]
          Length = 211

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C    C+ VCPV   + G      +   +CI C +CE  CP  A K +       +
Sbjct: 55  SCMHCDKPACMPVCPVKAIHRGPAGEVLVDQKKCIGCRMCERACPYGAPKFNASGETNYF 114


>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
          Length = 846

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  E C  C    CV+VCPV        +   AI    CI CG C  +CPV  I  + E
Sbjct: 789 IDGEKCRRC--GLCVKVCPVKAISGEIRKTPFAIDAKLCIACGACAQKCPVHVIAQEGE 845


>gi|309389388|gb|ADO77268.1| putative iron-sulfur protein [Halanaerobium praevalens DSM 2228]
          Length = 416

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E+CI C    C++ CP+D   +  N + I  D C+ CGVC   CP  A+
Sbjct: 290 ESCINCDK--CLDACPIDAITKNNNQIKIDQDICLGCGVCVRSCPTKAL 336


>gi|297559006|ref|YP_003677980.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843454|gb|ADH65474.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 294

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C    C++VCP    +  E   + +  D C  CG C P CP   I    E 
Sbjct: 115 SDVCKHCTSAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDKREED 171


>gi|291085186|ref|ZP_06570972.1| thiosulfate reductase electron transport protein phsb [Citrobacter
           youngae ATCC 29220]
 gi|291072235|gb|EFE10344.1| thiosulfate reductase electron transport protein phsb [Citrobacter
           youngae ATCC 29220]
          Length = 198

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  EN +  +    CI C  C   CP  
Sbjct: 69  SCQHCEDAPCVSVCPTGASFRDENGVVQVDKSRCIGCDYCVAACPFH 115


>gi|213416711|ref|ZP_03349855.1| hypothetical protein Salmonentericaenterica_01517 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 119

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|220933525|ref|YP_002512424.1| putative iron-sulfur cluster-binding protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994835|gb|ACL71437.1| putative iron-sulfur cluster-binding protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 243

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP    + D 
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRPEDGIVLVDYDKCIGCKYCSWACPYGVREIDE 125


>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 614

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y +++ C+ C    C+  CPV+C   E +    I    CI CGVC   C   A++  
Sbjct: 560 YEISDRCVGC--GLCLHRCPVNCISGERKMRHRIDQSRCIKCGVCFQTCKFHAVEKH 614


>gi|197118878|ref|YP_002139305.1| aldo/keto reductase family oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197088238|gb|ACH39509.1| oxidoreductase, aldo/keto reductase family [Geobacter bemidjiensis
           Bem]
          Length = 316

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    CV  C  D     +    +   ECI CG C   CP   I
Sbjct: 269 CKGC--GACVPACTNDALRLVDGKAVVDEAECILCGYCGAACPEFMI 313


>gi|78223444|ref|YP_385191.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
 gi|78194699|gb|ABB32466.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
          Length = 371

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C    C + CPV         L I  ++CI CG+C   CP  AI        +   
Sbjct: 298 RCIAC--GLCAKRCPVRGVTSIMGPLHISEEKCIGCGLCVTTCPTQAISLKERQTYQEPF 355

Query: 68  KINSEYATQW 77
               +    W
Sbjct: 356 DTGRQLFAAW 365



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 2/36 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           ++  E CI C    CV  CP       E      P 
Sbjct: 322 HISEEKCIGC--GLCVTTCPTQAISLKERQTYQEPF 355


>gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479]
 gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479]
          Length = 573

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  E C  C  T C   CP +      +N   I  ++C+ CG C  +C   AI 
Sbjct: 519 YIDPEKCKGC--TLCARNCPANAITGTVKNPHVIDGEKCLKCGACMEKCKFGAIY 571


>gi|256157994|ref|ZP_05455912.1| NarH, respiratory nitrate reductase, beta subunit [Brucella ceti
           M490/95/1]
 gi|256253047|ref|ZP_05458583.1| NarH, respiratory nitrate reductase, beta subunit [Brucella ceti
           B1/94]
 gi|261220143|ref|ZP_05934424.1| nitrate reductase [Brucella ceti B1/94]
 gi|265996509|ref|ZP_06109066.1| nitrate reductase [Brucella ceti M490/95/1]
 gi|260918727|gb|EEX85380.1| nitrate reductase [Brucella ceti B1/94]
 gi|262550806|gb|EEZ06967.1| nitrate reductase [Brucella ceti M490/95/1]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|255602894|ref|XP_002537944.1| Ferredoxin 7Fe, putative [Ricinus communis]
 gi|223514472|gb|EEF24439.1| Ferredoxin 7Fe, putative [Ricinus communis]
          Length = 87

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 12/84 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+   CI      CVE+CPV+C   G N         + I+PD CIDCG C   CPV
Sbjct: 1  MAYVIAAPCIA--DYSCVEICPVNCISPGPNEEEFDDAEQMYINPDVCIDCGACRDVCPV 58

Query: 53 DAIKPD--TEPGLELWLKINSEYA 74
           AI  +       + +  IN E+ 
Sbjct: 59 LAIYEEGCLPEKWKHYAGINKEFF 82


>gi|126459018|ref|YP_001055296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126248739|gb|ABO07830.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 275

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           NC+ C    C   CP           + I+ D CI CG CE  CP +
Sbjct: 91  NCLHCVDAPCARACPAGAIVTTPEGAVVINKDLCIGCGYCENACPFN 137


>gi|157159405|ref|YP_001462481.1| nitrate reductase, beta subunit [Escherichia coli E24377A]
 gi|157081435|gb|ABV21143.1| nitrate reductase, beta subunit [Escherichia coli E24377A]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|330828778|ref|YP_004391730.1| formate dehydrogenase iron-sulfur subunit [Aeromonas veronii B565]
 gi|328803914|gb|AEB49113.1| Formate dehydrogenase iron-sulfur subunit [Aeromonas veronii B565]
          Length = 219

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYHTDDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Halanaerobium praevalens DSM 2228]
          Length = 601

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E CI C    C +VCPVD    E +N   I PD CI CG CEPECPVDAI
Sbjct: 548 IDEEACIGCSK--CSKVCPVDAISGEIKNPFKIDPDVCIACGACEPECPVDAI 598


>gi|306845600|ref|ZP_07478169.1| nitrate reductase, beta subunit [Brucella sp. BO1]
 gi|306273921|gb|EFM55748.1| nitrate reductase, beta subunit [Brucella sp. BO1]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|260434033|ref|ZP_05788004.1| formate dehydrogenase iron-sulfur subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417861|gb|EEX11120.1| formate dehydrogenase iron-sulfur subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|254503333|ref|ZP_05115484.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439404|gb|EEE46083.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 652

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 4   VVTENC-------ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C         C    C+++CP        + + I P  C  CG+C   CP  A+ 
Sbjct: 267 VNEDLCAHSRAQKTGCN--RCLDLCPTGAITPAGDHITIDPMVCAGCGMCSAACPSGAVS 324

Query: 57  PDTEPGLELWLKINSEYATQW 77
            D      ++ +I +  AT W
Sbjct: 325 YDAPTPQHVFKRIET-LATTW 344


>gi|54308453|ref|YP_129473.1| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium
           profundum SS9]
 gi|46912882|emb|CAG19671.1| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium
           profundum SS9]
          Length = 230

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C +  CV VCP    ++  +   + + P +C+ CG C   CP      + E
Sbjct: 98  SCQHCDNAPCVHVCPTGASFKDPDTGIVDVDPFKCVGCGYCLAACPYKVRFFNPE 152


>gi|238792005|ref|ZP_04635641.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia intermedia
           ATCC 29909]
 gi|238728636|gb|EEQ20154.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia intermedia
           ATCC 29909]
          Length = 205

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y ++  C  C    CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D
Sbjct: 60  YYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFD 117


>gi|296104102|ref|YP_003614248.1| putative oxidoreductase Fe-S binding subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058561|gb|ADF63299.1| putative oxidoreductase Fe-S binding subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 658

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C + CP     + ++ + ++  +CI C  C   CP   ++    P  + 
Sbjct: 56  CHHCENAPCAQSCPNGAISKCDDSVQVNQQKCIGCKACVVACPFGTMEIVITPLDKD 112


>gi|227329693|ref|ZP_03833717.1| respiratory nitrate reductase 1 beta chain [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 521

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|255654945|ref|ZP_05400354.1| iron-dependent hydrogenase [Clostridium difficile QCD-23m63]
 gi|296449691|ref|ZP_06891461.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296877992|ref|ZP_06902011.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
 gi|296261415|gb|EFH08240.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296431060|gb|EFH16888.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
          Length = 498

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VTE C  C    C E C             I+ D C  CG+C+  C  DAI
Sbjct: 107 FTVTELCRGCLAHRCKEACKFGAISYINGRAYINHDLCKACGMCKSSCQYDAI 159



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFY--EGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C  VCP              IH D CI+CG 
Sbjct: 137 AYINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGA 196

Query: 46  CEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
           C   CP  AI   +   P  +   K  + YA   P IT + +S
Sbjct: 197 CMSACPFGAISDKSLIAPVAKKLAKKENMYAIVAPAITGQIDS 239


>gi|77920144|ref|YP_357959.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pelobacter carbinolicus DSM 2380]
 gi|77546227|gb|ABA89789.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Pelobacter carbinolicus DSM 2380]
          Length = 920

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 14/97 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            +   C  C +  C  VCPV   Y     L     + C+    C   CP    + +    
Sbjct: 757 FIPMLCQHCDYAPCEPVCPVYASYHNPEGLNVQVYNRCVGTRYCSNNCPYKVRRFNW--- 813

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              W  I       W     K  +   A +  G+ +K
Sbjct: 814 ---WEHI-------WAPPLEKMHNPDLAPRTRGMMEK 840


>gi|15898855|ref|NP_343460.1| indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus P2]
 gi|284174241|ref|ZP_06388210.1| indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus 98/2]
 gi|13815352|gb|AAK42250.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus P2]
 gi|261603266|gb|ACX92869.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Sulfolobus
           solfataricus 98/2]
          Length = 612

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP       +    I    CI CG C P CP  AI        
Sbjct: 546 VDLEKCTGCSICYDYFTCPAIIPR-NDKKAEIDNYTCIGCGACVPICPFKAISL-KGDKP 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|83312641|ref|YP_422905.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82947482|dbj|BAE52346.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 245

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y+ E    + +  D+CI C  C   CP  A + D
Sbjct: 74  SCLHCEEPPCVPVCPTGASYKREEDGIVLVDYDKCIGCKYCSWSCPYGAREFD 126


>gi|51894428|ref|YP_077119.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
 gi|51858117|dbj|BAD42275.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
          Length = 194

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C   CPV    + +  + +  + CI C  C   CP  A++ 
Sbjct: 62  CRHCEDAPCANACPVGAITQKDGIIDVDQETCIGCKTCVLACPFGAMEM 110


>gi|117925097|ref|YP_865714.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Magnetococcus sp. MC-1]
 gi|117608853|gb|ABK44308.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Magnetococcus sp. MC-1]
          Length = 228

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCP +  Y+ E    + +  D+CI C  C   CP    + D    +  
Sbjct: 72  SCLHCEDAPCVPVCPTEASYKREEDGIVLVDYDKCIGCKYCSWNCPYGMREFDPGEKVMK 131


>gi|326574044|gb|EGE23993.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis CO72]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|326563009|gb|EGE13284.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis 46P47B1]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|306840863|ref|ZP_07473608.1| nitrate reductase, beta subunit [Brucella sp. BO2]
 gi|306289134|gb|EFM60390.1| nitrate reductase, beta subunit [Brucella sp. BO2]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|256059470|ref|ZP_05449672.1| NarH, respiratory nitrate reductase, beta subunit [Brucella
           neotomae 5K33]
 gi|261323442|ref|ZP_05962639.1| nitrate reductase [Brucella neotomae 5K33]
 gi|261299422|gb|EEY02919.1| nitrate reductase [Brucella neotomae 5K33]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|322419348|ref|YP_004198571.1| hypothetical protein GM18_1832 [Geobacter sp. M18]
 gi|320125735|gb|ADW13295.1| hypothetical protein GM18_1832 [Geobacter sp. M18]
          Length = 222

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   CV  CP++  ++  N + +   D+C   G C P CP  A   D 
Sbjct: 90  CNHCEDPRCVPACPLEATFKLPNGIVVTDWDKCEGYGACVPACPYGARFLDE 141


>gi|239833405|ref|ZP_04681733.1| nitrate reductase, beta subunit [Ochrobactrum intermedium LMG 3301]
 gi|239821468|gb|EEQ93037.1| nitrate reductase, beta subunit [Ochrobactrum intermedium LMG 3301]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|221198557|ref|ZP_03571602.1| nitrate reductase, beta subunit [Burkholderia multivorans CGD2M]
 gi|221207786|ref|ZP_03580793.1| nitrate reductase, beta subunit [Burkholderia multivorans CGD2]
 gi|221172283|gb|EEE04723.1| nitrate reductase, beta subunit [Burkholderia multivorans CGD2]
 gi|221181008|gb|EEE13410.1| nitrate reductase, beta subunit [Burkholderia multivorans CGD2M]
          Length = 511

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|187934556|ref|YP_001884438.1| hypothetical protein CLL_A0202 [Clostridium botulinum B str.
          Eklund 17B]
 gi|188590020|ref|YP_001919636.1| hypothetical protein CLH_0200 [Clostridium botulinum E3 str.
          Alaska E43]
 gi|251778001|ref|ZP_04820921.1| ferredoxin, 4Fe-4S [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|187722709|gb|ACD23930.1| ferredoxin, 4Fe-4S [Clostridium botulinum B str. Eklund 17B]
 gi|188500301|gb|ACD53437.1| ferredoxin, 4Fe-4S [Clostridium botulinum E3 str. Alaska E43]
 gi|243082316|gb|EES48206.1| ferredoxin, 4Fe-4S [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 56

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++C+ C    C   CPVD   +G+ +  I  D CIDCG C   CPV A   +
Sbjct: 1  MAFVINDSCVSC--GACAGECPVDAISQGDAYYVIDADTCIDCGNCANVCPVGAPVQE 56


>gi|146311716|ref|YP_001176790.1| respiratory nitrate reductase beta subunit [Enterobacter sp. 638]
 gi|145318592|gb|ABP60739.1| respiratory nitrate reductase beta subunit [Enterobacter sp. 638]
          Length = 514

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|62317779|ref|YP_223632.1| respiratory nitrate reductase subunit beta NarH [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269760|ref|YP_419051.1| cytochrome c heme-binding domain-containing protein [Brucella
           melitensis biovar Abortus 2308]
 gi|189023032|ref|YP_001932773.1| NarH, respiratory nitrate reductase, beta subunit [Brucella abortus
           S19]
 gi|225628755|ref|ZP_03786789.1| nitrate reductase, beta subunit [Brucella ceti str. Cudo]
 gi|237817319|ref|ZP_04596311.1| nitrate reductase, beta subunit [Brucella abortus str. 2308 A]
 gi|254695420|ref|ZP_05157248.1| NarH, respiratory nitrate reductase, beta subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|254706161|ref|ZP_05167989.1| NarH, respiratory nitrate reductase, beta subunit [Brucella
           pinnipedialis M163/99/10]
 gi|254711541|ref|ZP_05173352.1| NarH, respiratory nitrate reductase, beta subunit [Brucella
           pinnipedialis B2/94]
 gi|254712139|ref|ZP_05173950.1| NarH, respiratory nitrate reductase, beta subunit [Brucella ceti
           M644/93/1]
 gi|254732514|ref|ZP_05191092.1| NarH, respiratory nitrate reductase, beta subunit [Brucella abortus
           bv. 4 str. 292]
 gi|256015081|ref|YP_003105090.1| respiratory nitrate reductase, beta subunit [Brucella microti CCM
           4915]
 gi|256029824|ref|ZP_05443438.1| NarH, respiratory nitrate reductase, beta subunit [Brucella
           pinnipedialis M292/94/1]
 gi|256256465|ref|ZP_05462001.1| NarH, respiratory nitrate reductase, beta subunit [Brucella abortus
           bv. 9 str. C68]
 gi|260167070|ref|ZP_05753881.1| respiratory nitrate reductase, beta subunit [Brucella sp. F5/99]
 gi|260545014|ref|ZP_05820835.1| NarH protein [Brucella abortus NCTC 8038]
 gi|260760318|ref|ZP_05872666.1| nitrate reductase [Brucella abortus bv. 4 str. 292]
 gi|260882701|ref|ZP_05894315.1| nitrate reductase [Brucella abortus bv. 9 str. C68]
 gi|261215798|ref|ZP_05930079.1| nitrate reductase [Brucella abortus bv. 3 str. Tulya]
 gi|261313603|ref|ZP_05952800.1| nitrate reductase [Brucella pinnipedialis M163/99/10]
 gi|261319157|ref|ZP_05958354.1| nitrate reductase [Brucella pinnipedialis B2/94]
 gi|261319797|ref|ZP_05958994.1| nitrate reductase [Brucella ceti M644/93/1]
 gi|261756463|ref|ZP_06000172.1| nitrate reductase, beta subunit [Brucella sp. F5/99]
 gi|265986840|ref|ZP_06099397.1| nitrate reductase [Brucella pinnipedialis M292/94/1]
 gi|297249824|ref|ZP_06933525.1| nitrate reductase, beta subunit [Brucella abortus bv. 5 str. B3196]
 gi|62197972|gb|AAX76271.1| NarH, respiratory nitrate reductase, beta subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82940034|emb|CAJ13071.1| Cytochrome c heme-binding site:4Fe-4S ferredoxin, iron-sulfur
           binding domain:Nitrate reductase, beta subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|189021606|gb|ACD74327.1| NarH, respiratory nitrate reductase, beta subunit [Brucella abortus
           S19]
 gi|225616601|gb|EEH13649.1| nitrate reductase, beta subunit [Brucella ceti str. Cudo]
 gi|237788132|gb|EEP62348.1| nitrate reductase, beta subunit [Brucella abortus str. 2308 A]
 gi|255997741|gb|ACU49428.1| respiratory nitrate reductase, beta subunit [Brucella microti CCM
           4915]
 gi|260098285|gb|EEW82159.1| NarH protein [Brucella abortus NCTC 8038]
 gi|260670636|gb|EEX57576.1| nitrate reductase [Brucella abortus bv. 4 str. 292]
 gi|260872229|gb|EEX79298.1| nitrate reductase [Brucella abortus bv. 9 str. C68]
 gi|260917405|gb|EEX84266.1| nitrate reductase [Brucella abortus bv. 3 str. Tulya]
 gi|261292487|gb|EEX95983.1| nitrate reductase [Brucella ceti M644/93/1]
 gi|261298380|gb|EEY01877.1| nitrate reductase [Brucella pinnipedialis B2/94]
 gi|261302629|gb|EEY06126.1| nitrate reductase [Brucella pinnipedialis M163/99/10]
 gi|261736447|gb|EEY24443.1| nitrate reductase, beta subunit [Brucella sp. F5/99]
 gi|264659037|gb|EEZ29298.1| nitrate reductase [Brucella pinnipedialis M292/94/1]
 gi|297173693|gb|EFH33057.1| nitrate reductase, beta subunit [Brucella abortus bv. 5 str. B3196]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|119776740|ref|YP_929480.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
 gi|119769240|gb|ABM01811.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
          Length = 189

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E  +     D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEEGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|256017375|ref|ZP_05431240.1| hydrogenase 4, 4Fe-4S subunit [Shigella sp. D9]
          Length = 205

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|254699584|ref|ZP_05161412.1| NarH, respiratory nitrate reductase, beta subunit [Brucella suis
           bv. 5 str. 513]
 gi|261750040|ref|ZP_05993749.1| nitrate reductase [Brucella suis bv. 5 str. 513]
 gi|261739793|gb|EEY27719.1| nitrate reductase [Brucella suis bv. 5 str. 513]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|253688642|ref|YP_003017832.1| nitrate reductase, beta subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755220|gb|ACT13296.1| nitrate reductase, beta subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 521

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|153003731|ref|YP_001378056.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027304|gb|ABS25072.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 309

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C+   C+E CP       E   + + PD C  CG C   CP   I+   E 
Sbjct: 126 SDVCKHCERAGCLEACPTGAIVRTEFGSVYVQPDVCNGCGYCVSACPFGVIERREED 182


>gi|23500053|ref|NP_699493.1| respiratory nitrate reductase subunit beta [Brucella suis 1330]
 gi|161620373|ref|YP_001594259.1| nitrate reductase, beta subunit [Brucella canis ATCC 23365]
 gi|254702706|ref|ZP_05164534.1| nitrate reductase, beta subunit [Brucella suis bv. 3 str. 686]
 gi|260568387|ref|ZP_05838856.1| NarH protein [Brucella suis bv. 4 str. 40]
 gi|261753294|ref|ZP_05997003.1| nitrate reductase [Brucella suis bv. 3 str. 686]
 gi|23463642|gb|AAN33498.1| respiratory nitrate reductase, beta subunit [Brucella suis 1330]
 gi|161337184|gb|ABX63488.1| nitrate reductase, beta subunit [Brucella canis ATCC 23365]
 gi|260155052|gb|EEW90133.1| NarH protein [Brucella suis bv. 4 str. 40]
 gi|261743047|gb|EEY30973.1| nitrate reductase [Brucella suis bv. 3 str. 686]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|85076501|ref|XP_955936.1| NADH:ubiquinone oxidoreductase 21.3c kD subunit [Neurospora crassa
           OR74A]
 gi|3929361|sp|Q12644|NDUS8_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; Flags: Precursor
 gi|1246816|emb|CAA64794.1| ferredoxin-like iron-sulfur subunit of mitochondrial complex I
           [Neurospora crassa]
 gi|28916969|gb|EAA26700.1| NADH:ubiquinone oxidoreductase 21.3c kD subunit [Neurospora crassa
           OR74A]
          Length = 219

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 117 EERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 174

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 175 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 207


>gi|331673937|ref|ZP_08374700.1| hydrogenase-4 component A [Escherichia coli TA280]
 gi|331069210|gb|EGI40602.1| hydrogenase-4 component A [Escherichia coli TA280]
          Length = 218

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEKAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|320535768|ref|ZP_08035850.1| ferredoxin [Treponema phagedenis F0421]
 gi|320147378|gb|EFW38912.1| ferredoxin [Treponema phagedenis F0421]
          Length = 56

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++E CI C    C   CPV+   E  +   I    CI CG C   CP  AI  +
Sbjct: 1  MAYKISEECINC--GACKSECPVNAISEQTDMHVIDAGLCISCGACAEVCPAQAISEE 56


>gi|296808641|ref|XP_002844659.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Arthroderma otae CBS
           113480]
 gi|238844142|gb|EEQ33804.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Arthroderma otae CBS
           113480]
          Length = 231

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 129 EERCIACKL--CEAICPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 186

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 187 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 219


>gi|237732063|ref|ZP_04562544.1| thiosulfate reductase electron transporter PhsB [Citrobacter sp.
           30_2]
 gi|226907602|gb|EEH93520.1| thiosulfate reductase electron transporter PhsB [Citrobacter sp.
           30_2]
          Length = 192

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCEDAPCVSVCPTGASFRDENGIVQVDKSRCIGCDYCVAACPFH 109


>gi|307299220|ref|ZP_07579021.1| dihydroorotate dehydrogenase family protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915016|gb|EFN45402.1| dihydroorotate dehydrogenase family protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 359

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  + C  C    CVEVCP       E  + +   EC  CG+CE  CPV AI
Sbjct: 304 PVIDHDKCTRC--GLCVEVCPYFALSLQE-KVEVDSAECFGCGLCESICPVAAI 354


>gi|301310562|ref|ZP_07216501.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300832136|gb|EFK62767.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 301

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LEL 65
            CI C    CV+VCP       E  +  +   C  CG C   CP  A++         E+
Sbjct: 51  KCIGC--GACVDVCPTGALTLTEAGIVTNRSLCRTCGRCAEVCPTLAMEMSGREYSIDEV 108

Query: 66  WLKINSE 72
             +I  E
Sbjct: 109 MREIEKE 115


>gi|213163576|ref|ZP_03349286.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 408

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|222529283|ref|YP_002573165.1| fe-S cluster domain-containing protein [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222456130|gb|ACM60392.1| Fe-S cluster domain protein [Caldicellulosiruptor bescii DSM
          6725]
          Length = 443

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E C  C  T+C++ CP +      +   I    CIDCG C   CP  A    T+   E
Sbjct: 10 DKEKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHAKYAITDSLEE 67


>gi|153010215|ref|YP_001371429.1| nitrate reductase, beta subunit [Ochrobactrum anthropi ATCC 49188]
 gi|151562103|gb|ABS15600.1| nitrate reductase, beta subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|149189582|ref|ZP_01867865.1| nitrate reductase, beta subunit [Vibrio shilonii AK1]
 gi|148836561|gb|EDL53515.1| nitrate reductase, beta subunit [Vibrio shilonii AK1]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|21218771|ref|NP_624550.1| nitrate reductase subunit beta NarH2 [Streptomyces coelicolor
           A3(2)]
 gi|5777690|emb|CAB53441.1| nitrate reductase beta chain NarH2 [Streptomyces coelicolor A3(2)]
          Length = 522

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   + 
Sbjct: 191 CEHCLNPACVSACPSGAMYKRVEDGIVLVDQDKCRGWRMCVTACPYKKVY 240


>gi|328773488|gb|EGF83525.1| hypothetical protein BATDEDRAFT_15687 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 223

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 121 EERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N EY+  T    +  K++ L +  K +
Sbjct: 179 VEGP----------NFEYSTETHEELLYNKEKLLSNGDKWE 209


>gi|291245007|ref|XP_002742384.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 8,
           mitochondrial-like [Saccoglossus kowalevskii]
          Length = 207

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 105 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 162

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  K +  
Sbjct: 163 VEGP----------NFEYSTETHEELLYNKEKLLNNGDKWEAE 195


>gi|254720019|ref|ZP_05181830.1| NarH, respiratory nitrate reductase, beta subunit [Brucella sp.
           83/13]
 gi|265985028|ref|ZP_06097763.1| nitrate reductase [Brucella sp. 83/13]
 gi|306838440|ref|ZP_07471284.1| nitrate reductase, beta subunit [Brucella sp. NF 2653]
 gi|264663620|gb|EEZ33881.1| nitrate reductase [Brucella sp. 83/13]
 gi|306406479|gb|EFM62714.1| nitrate reductase, beta subunit [Brucella sp. NF 2653]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|237736266|ref|ZP_04566747.1| electron transport complex protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229421614|gb|EEO36661.1| electron transport complex protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 329

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           I C    C + CPV       N   I P +CI CG+C  +CP  AI  D EP     ++ 
Sbjct: 219 IGC--GICAKNCPVGAITVENNLAKIDPAKCISCGICATKCPTKAIVSDVEPKKAEIIEE 276

Query: 70  NSE 72
           N +
Sbjct: 277 NCK 279



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ ENC  C  T C   CPV       +    +  ++C+ CG+C   C   AIK 
Sbjct: 273 IIEENCKGC--TACARKCPVGAIEGAVKEKHHVITEKCVGCGICFDTCKFKAIKM 325



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 14  HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
           H DC +VCPV      E  +  +  D+CI CG+C+  CP   I  
Sbjct: 146 HGDCEKVCPVGAIKVNEKGIAEVDEDKCISCGLCQKACPKKVIAM 190



 Score = 34.6 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +    CI C    C   CP              I  + C  C  C  +CPV AI+   + 
Sbjct: 242 IDPAKCISC--GICATKCPTKAIVSDVEPKKAEIIEENCKGCTACARKCPVGAIEGAVKE 299

Query: 62  GLE 64
              
Sbjct: 300 KHH 302


>gi|227111903|ref|ZP_03825559.1| respiratory nitrate reductase 1 beta chain [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 521

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|217968655|ref|YP_002353889.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217505982|gb|ACK52993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 215

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C  VCP +   +  + L  I  D CI C  C   CP +A     E   
Sbjct: 57  ACMHCAEPPCAAVCPTEATQKRRDGLVTIDYDVCIGCANCVMACPYEARSIVHEARF 113


>gi|183600888|ref|ZP_02962381.1| hypothetical protein PROSTU_04495 [Providencia stuartii ATCC 25827]
 gi|188019214|gb|EDU57254.1| hypothetical protein PROSTU_04495 [Providencia stuartii ATCC 25827]
          Length = 513

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRSEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|163844480|ref|YP_001622135.1| nitrate reductase, beta subunit [Brucella suis ATCC 23445]
 gi|163675203|gb|ABY39313.1| nitrate reductase, beta subunit [Brucella suis ATCC 23445]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|148978911|ref|ZP_01815231.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrionales
           bacterium SWAT-3]
 gi|145962109|gb|EDK27395.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrionales
           bacterium SWAT-3]
          Length = 213

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPV 52
           +Y ++  C  C +  CV+VCP     + +    + +    CI C  C   CP 
Sbjct: 60  SYYLSIACNHCTNPACVKVCPSGAMRKRDEDGLVVVDESVCIGCQHCSNACPY 112


>gi|17989296|ref|NP_541929.1| nitrate reductase beta chain [Brucella melitensis bv. 1 str. 16M]
 gi|256043216|ref|ZP_05446154.1| nitrate reductase beta chain [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564430|ref|ZP_05834915.1| NarH family protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989644|ref|ZP_06102201.1| nitrate reductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|17985161|gb|AAL54193.1| nitrate reductase beta chain [Brucella melitensis bv. 1 str. 16M]
 gi|260152073|gb|EEW87166.1| NarH family protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000313|gb|EEZ13003.1| nitrate reductase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|331083579|ref|ZP_08332690.1| ferredoxin [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403790|gb|EGG83342.1| ferredoxin [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 56

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T+ C+ C    C   CPV+   EG++   I  D C+DCG C   CP +AI
Sbjct: 1  MAYVITDECVSC--GTCAGECPVEAISEGDDKYVIDADTCVDCGTCAGVCPTEAI 53


>gi|320196305|gb|EFW70929.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
          WV_060327]
          Length = 636

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 85


>gi|312793474|ref|YP_004026397.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312876011|ref|ZP_07736000.1| Fe-S cluster domain protein [Caldicellulosiruptor lactoaceticus
          6A]
 gi|311797209|gb|EFR13549.1| Fe-S cluster domain protein [Caldicellulosiruptor lactoaceticus
          6A]
 gi|312180614|gb|ADQ40784.1| Fe-S cluster domain protein [Caldicellulosiruptor kristjanssonii
          177R1B]
          Length = 443

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E C  C  T+C++ CP +      +   I    CIDCG C   CP  A    T+   E
Sbjct: 10 DKEKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHAKYAITDSLEE 67


>gi|296112969|ref|YP_003626907.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis RH4]
 gi|295920663|gb|ADG61014.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis RH4]
 gi|326561193|gb|EGE11558.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis 7169]
 gi|326566316|gb|EGE16467.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis 12P80B1]
 gi|326567920|gb|EGE18017.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis BC1]
 gi|326569501|gb|EGE19561.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis BC8]
 gi|326572734|gb|EGE22720.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis BC7]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|157377554|ref|YP_001476154.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319928|gb|ABV39026.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 563

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C    C+  CP D     +  + I P  C   G C   CP  AI  D     
Sbjct: 204 GCN--RCLNFCPADAIQSIDKMITIDPYLCHGAGSCTNACPTGAISYDLPTPQ 254



 Score = 40.7 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           + ++ C LC    CV  CP     +G +  A+H  E  C+ CG+CE  CP   I
Sbjct: 428 INSDKCTLCL--SCVSTCPTQALTDGGDKPALHFVEQDCVQCGLCESACPEKVI 479


>gi|90413331|ref|ZP_01221325.1| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium
           profundum 3TCK]
 gi|90325732|gb|EAS42195.1| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium
           profundum 3TCK]
          Length = 230

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C +  CV VCP    ++  +   + + P +C+ CG C   CP      + E
Sbjct: 98  SCQHCDNAPCVHVCPTGASFKDPDTGIVDVDPFKCVGCGYCLAACPYKVRFFNPE 152


>gi|308051326|ref|YP_003914892.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307633516|gb|ADN77818.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 205

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y V+  C  C +  CV+ CP    ++   +  + +    C+ C  C   CP DA + D 
Sbjct: 63  SYYVSIGCNHCSNPVCVKACPTGAMHKRRSDGLVHVDQGICVGCEACARACPYDAPQIDK 122

Query: 60  E 60
           +
Sbjct: 123 D 123


>gi|284922428|emb|CBG35515.1| hydrogenase-4 component A [Escherichia coli 042]
          Length = 205

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|260756886|ref|ZP_05869234.1| nitrate reductase [Brucella abortus bv. 6 str. 870]
 gi|261216927|ref|ZP_05931208.1| nitrate reductase [Brucella ceti M13/05/1]
 gi|260676994|gb|EEX63815.1| nitrate reductase [Brucella abortus bv. 6 str. 870]
 gi|260922016|gb|EEX88584.1| nitrate reductase [Brucella ceti M13/05/1]
          Length = 504

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 168 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 226

Query: 59  T 59
            
Sbjct: 227 W 227


>gi|254294094|ref|YP_003060117.1| NADH dehydrogenase subunit I [Hirschia baltica ATCC 49814]
 gi|254042625|gb|ACT59420.1| NADH-quinone oxidoreductase, chain I [Hirschia baltica ATCC 49814]
          Length = 162

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAQAITIEAEPRSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P  E   +   E          K   L +  + +    K
Sbjct: 118 V--EGPNFEFSTETREELF------YDKDRLLSNGDRWERQIAK 153


>gi|224922706|dbj|BAH28814.1| nitrate reductase beta subunit [Ochrobactrum anthropi]
          Length = 512

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|212637700|ref|YP_002314225.1| formate dehydrogenase, iron-sulfur subunit [Shewanella
           piezotolerans WP3]
 gi|212559184|gb|ACJ31638.1| Formate dehydrogenase, iron-sulfur subunit [Shewanella
           piezotolerans WP3]
          Length = 189

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ +     D CI CG C   CP  A
Sbjct: 53  ISIACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|149375897|ref|ZP_01893664.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
 gi|149359777|gb|EDM48234.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
          Length = 202

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 56  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 106


>gi|312967752|ref|ZP_07781967.1| protein aegA [Escherichia coli 2362-75]
 gi|312287949|gb|EFR15854.1| protein aegA [Escherichia coli 2362-75]
          Length = 636

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 85


>gi|300855217|ref|YP_003780201.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300435332|gb|ADK15099.1| predicted transcriptional regulator containing a ferredoxin
          domain [Clostridium ljungdahlii DSM 13528]
          Length = 638

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 4  VVTENCILCKHTDCVEVCP-----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ E C  C    C+  CP     V     G + + I  + CI CG C   C   A   +
Sbjct: 8  VLKEKCTGCNK--CIRTCPILGANVTATENGVSKVYIDEERCIGCGECVKVCEHGARDFN 65

Query: 59 TEPGL 63
               
Sbjct: 66 DSTQD 70



 Score = 33.8 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGE 30
          Y+  E CI C   +CV+VC        +
Sbjct: 41 YIDEERCIGC--GECVKVCEHGARDFND 66


>gi|284007089|emb|CBA72363.1| anaerobic dimethyl sulfoxide reductase chain B [Arsenophonus
           nasoniae]
          Length = 208

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y ++  C  C    CV  CP    ++   +  + ++ + C+ C  CE  CP  A + D
Sbjct: 60  YYLSIACNHCDSPTCVAGCPTGAMHKRAEDGLVVVNQEICVGCRYCELRCPYGAPQFD 117


>gi|291547967|emb|CBL21075.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus sp. SR1/5]
          Length = 307

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +  +E C  CK       CP       +  L I  + C  CG C  +CP  +I 
Sbjct: 167 PHFDSEACKGCKKCAIEATCPNKVAKVVDGKLHIDEELCRHCGRCVGKCPFHSIP 221


>gi|225686143|ref|YP_002734115.1| nitrate reductase subunit beta [Brucella melitensis ATCC 23457]
 gi|256262733|ref|ZP_05465265.1| NarH [Brucella melitensis bv. 2 str. 63/9]
 gi|225642248|gb|ACO02161.1| nitrate reductase, beta subunit [Brucella melitensis ATCC 23457]
 gi|263092538|gb|EEZ16773.1| NarH [Brucella melitensis bv. 2 str. 63/9]
          Length = 512

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|157779399|gb|ABV71243.1| NADPH-dependent sulfur oxidoreductase B subunit [Thermococcus
           litoralis DSM 5473]
          Length = 555

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++ + C  C  T C   CPV      +     I  + CI CG C   C  DAIK   
Sbjct: 496 IIADKCTGC--TACAIFCPVKAISGEKLKPHVIDQEACIKCGTCYNVCRFDAIKIVD 550


>gi|171185513|ref|YP_001794432.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934725|gb|ACB39986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 279

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC+ C    C   CPV          + I  DECI CG C+  CP D  K   +
Sbjct: 94  NCMHCVEAPCARACPVGAIKVSPEGAVVIEKDECIGCGYCQMACPYDVPKRGDD 147


>gi|169769016|ref|XP_001818978.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|83766836|dbj|BAE56976.1| unnamed protein product [Aspergillus oryzae]
          Length = 226

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 124 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 181

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 182 VE----------TANAEYATETREELLYNKEKLLANGDKWEPE 214


>gi|332093036|gb|EGI98102.1| protein aegA [Shigella boydii 3594-74]
          Length = 636

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 85


>gi|326559936|gb|EGE10335.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis
           103P14B1]
 gi|326573876|gb|EGE23828.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis
           101P30B1]
 gi|326577327|gb|EGE27214.1| nitrate reductase beta subunit NarH [Moraxella catarrhalis O35E]
          Length = 512

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|312622471|ref|YP_004024084.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202938|gb|ADQ46265.1| Fe-S cluster domain protein [Caldicellulosiruptor kronotskyensis
          2002]
          Length = 443

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E C  C  T+C++ CP +      +   I    CIDCG C   CP  A    T+   E
Sbjct: 10 DKEKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHAKYAITDSLEE 67


>gi|303256812|ref|ZP_07342826.1| molybdopterin oxidoreductase [Burkholderiales bacterium 1_1_47]
 gi|302860303|gb|EFL83380.1| molybdopterin oxidoreductase [Burkholderiales bacterium 1_1_47]
          Length = 253

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPV 52
           C  C++  CV+VCP    +     + +H DE CI C +C+  CP 
Sbjct: 62  CNHCENPQCVKVCPTGAMFISPEGVVLHNDEACIGCRLCQNACPY 106


>gi|301771866|ref|XP_002921339.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Ailuropoda melanoleuca]
 gi|301771868|ref|XP_002921340.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Ailuropoda melanoleuca]
          Length = 210

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLSNGDKWEAE 198


>gi|288930707|ref|YP_003434767.1| nitrate reductase subunit beta [Ferroglobus placidus DSM 10642]
 gi|288892955|gb|ADC64492.1| nitrate reductase, beta subunit [Ferroglobus placidus DSM 10642]
          Length = 485

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + +  + C     C   CP   +  + 
Sbjct: 179 CNHCLNPACVAACPQRAIYKRGEDGIVLVDQNTCRGWRFCVTACPYKKVYYNW 231


>gi|238501446|ref|XP_002381957.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
 gi|220692194|gb|EED48541.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
          Length = 226

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 124 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 181

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 182 VE----------TANAEYATETREELLYNKEKLLANGDKWEPE 214


>gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 626

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           YVV E  C  C    C + CP +  +        I  ++CI CG+C  +C   AI+ 
Sbjct: 571 YVVNEQLCKGC--GLCAKSCPQNAIFGERGKPYKIDQEKCIKCGLCVQKCRFKAIEM 625



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VCP            ++   C  CG+C   CP +AI  +
Sbjct: 559 VCPSGTC-VSFKKYVVNEQLCKGCGLCAKSCPQNAIFGE 596


>gi|160879121|ref|YP_001558089.1| nitroreductase [Clostridium phytofermentans ISDg]
 gi|160427787|gb|ABX41350.1| nitroreductase [Clostridium phytofermentans ISDg]
          Length = 273

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V  E CI C    C+  CP  C    +N   +    CI+CG C   CP  A+  + +
Sbjct: 1  MMIVNKEKCIAC--GLCINDCPARCITWKDNKAFVVNKICIECGHCIAICPKFAVSTEED 58

Query: 61 PGLE 64
             E
Sbjct: 59 KMKE 62


>gi|27380020|ref|NP_771549.1| NADH dehydrogenase subunit I [Bradyrhizobium japonicum USDA 110]
 gi|81736780|sp|Q89KJ6|NUOI_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|27353174|dbj|BAC50174.1| NADH ubiquinone oxidoreductase chain I [Bradyrhizobium japonicum
           USDA 110]
          Length = 168

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG+C+  CPVDA
Sbjct: 65  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 122

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K + L +  + +    K
Sbjct: 123 IV--EGPNFEFATETREELF------YDKAKLLANGDRWEREIAK 159


>gi|114566722|ref|YP_753876.1| thiamine pyrophosphate enzyme [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337657|gb|ABI68505.1| thiamine pyrophosphate enzyme [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 580

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV  E C  CK   C+++ C    + E +    I+P+ C+ CG+C   C  DAI
Sbjct: 524 YVDPELCKSCKL--CIKIGCTGIYWVEEDRKAVINPNTCVACGLCPQVCTFDAI 575


>gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 633

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  E C  C    C + CPV+      +    I  D+CI CG C   C   A+
Sbjct: 573 PWINAEKCKGC--GKCAKKCPVEAISGELKQPHVIDQDKCIKCGACLQSCKFGAV 625



 Score = 34.6 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +VCP     +      I+ ++C  CG C  +CPV+AI  +
Sbjct: 560 KVCPAGQC-KALLKPWINAEKCKGCGKCAKKCPVEAISGE 598


>gi|257792646|ref|YP_003183252.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488934|ref|ZP_07947464.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831070|ref|ZP_08164394.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257476543|gb|ACV56863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912008|gb|EFV33587.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486991|gb|EGC89437.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 180

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C+   CV VCP    Y G + +  +    CI C  C   CP      + E
Sbjct: 58  CMHCEDAPCVAVCPTGAAYIGADGIVGVDHGRCIGCLYCMAACPYQVRVRNEE 110


>gi|223041221|ref|ZP_03611471.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
 gi|222877513|gb|EEF12644.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
          Length = 213

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C+   C  VCPVDCFY   + +     D CI CG C   CP  A
Sbjct: 61  ACMHCEDAPCSLVCPVDCFYIRADGVVLHDKDICIGCGYCLYACPFGA 108


>gi|206889752|ref|YP_002248980.1| NrfC protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741690|gb|ACI20747.1| NrfC protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 185

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C+   C++ CP    +  ++    I   +CI C  C   CP DA     +   +
Sbjct: 55  SELCNHCEEAPCIDACPTRASHRAKDGTVQIDRKKCIGCKACILACPYDARYSHPKGYAD 114

Query: 65  L 65
            
Sbjct: 115 K 115


>gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 596

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +V + C  C    C   CPV+      +    I+ + CI CG C  +CP  AI
Sbjct: 543 IVADKCKGC--GLCARNCPVNAISGELKQPHVINQEACIKCGTCFEKCPFGAI 593


>gi|154500042|ref|ZP_02038080.1| hypothetical protein BACCAP_03700 [Bacteroides capillosus ATCC
           29799]
 gi|150271132|gb|EDM98401.1| hypothetical protein BACCAP_03700 [Bacteroides capillosus ATCC
           29799]
          Length = 387

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V E C+ C    C   CPV           I   +CI C  C   CP  A++  T
Sbjct: 326 VREACVGC--GICAASCPVKAITVKNRRARIDTGKCIRCYCCHELCPHKAVELHT 378


>gi|117617793|ref|YP_857568.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559200|gb|ABK36148.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 576

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C    C++VCP D        + I P  C   G C   CP  AI      
Sbjct: 215 GCS--RCLDVCPTDALKPINGRIQIDPHLCQGFGSCASACPTGAIAYHQPD 263



 Score = 41.5 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +   +   L     +CI CG+CE  CP  AI
Sbjct: 444 CTLCMG--CVAVCPSRALHAVGHAPGLNFIEQDCIQCGMCEKACPEQAI 490


>gi|297544307|ref|YP_003676609.1| Fe-S cluster domain-containing protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|296842082|gb|ADH60598.1| Fe-S cluster domain protein [Thermoanaerobacter mathranii subsp.
          mathranii str. A3]
          Length = 435

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 10 DKDRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|292491700|ref|YP_003527139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580295|gb|ADE14752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 195

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPVDCFY  ++ +     D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCTDAPCAAVCPVDCFYTTDDGIVLHDKDLCIGCGYCFYACPFGAPQY 104


>gi|332278371|ref|ZP_08390784.1| hydrogenase 4 Fe-S subunit [Shigella sp. D9]
 gi|332100723|gb|EGJ04069.1| hydrogenase 4 Fe-S subunit [Shigella sp. D9]
          Length = 218

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|320200025|gb|EFW74614.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
          EC4100B]
          Length = 636

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 85


>gi|317483797|ref|ZP_07942737.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924900|gb|EFV46046.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 419

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C +VCPV+  +      G+ F  + P+ CI CGVC   C    +  +  P 
Sbjct: 290 CRGC--GKCEKVCPVNAIHMEDGPAGKRFAFVDPERCIGCGVCVRSCAFGQLTLEARPE 346


>gi|224368626|ref|YP_002602789.1| MopA [Desulfobacterium autotrophicum HRM2]
 gi|223691342|gb|ACN14625.1| MopA [Desulfobacterium autotrophicum HRM2]
          Length = 1004

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI---KPDTEPGLE 64
           C  C    C  VCPV   +  +  L     + CI    C   CP         D E    
Sbjct: 842 CQHCDDAPCESVCPVYAPHHSKEGLNNQVYNRCIGTRFCAQNCPYKVRKFNWFDWERPKP 901

Query: 65  LWLKINSEYATQWPNITTK 83
           L L++N +   +   I  K
Sbjct: 902 LNLQLNPDVTVRSKGIMEK 920


>gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
 gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 596

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  E C  C    C + CPV     + +    I  ++CI CG C  +CP  AI 
Sbjct: 543 IDPEKCKAC--GICAKNCPVGAISGKPKTPYVIDQEKCIKCGTCIDKCPFGAIY 594



 Score = 33.8 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYE 28
            YV+  E CI C    C++ CP    Y+
Sbjct: 570 PYVIDQEKCIKC--GTCIDKCPFGAIYK 595


>gi|150015010|ref|YP_001307264.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium beijerinckii NCIMB 8052]
 gi|149901475|gb|ABR32308.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Clostridium beijerinckii NCIMB 8052]
          Length = 56

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  MAFVINDSCVSC--GACAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGAPNQE 56


>gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 598

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV+E C  C    C + CPVDC    +G+    I  ++CI CG C   CP  AI
Sbjct: 544 VVSELCKKC--GICAKKCPVDCISGVKGKEVYLIDQEKCIKCGACLEACPFKAI 595


>gi|326410478|gb|ADZ67542.1| nitrate reductase subunit beta [Brucella melitensis M28]
 gi|326553770|gb|ADZ88409.1| nitrate reductase subunit beta [Brucella melitensis M5-90]
          Length = 512

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|322419479|ref|YP_004198702.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320125866|gb|ADW13426.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 279

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            E C+ C    C  VCPV  F + +          CI C  C   CP    K + 
Sbjct: 81  KEMCMHCNEPACASVCPVGAFKKTKEGPVTYDAKRCIGCRFCMVACPFGVPKYEW 135


>gi|188586494|ref|YP_001918039.1| Electron transfer flavoprotein alpha/beta-subunit [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179351181|gb|ACB85451.1| Electron transfer flavoprotein alpha/beta-subunit [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 410

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          ++T+ C  C    CV+ CP +     ++   ++   C +CG C   C   AI  + E 
Sbjct: 5  ILTDKCKGC--ALCVDACPFEAIEMKDDIAVLNES-CTNCGACIESCKFGAIIKEEED 59


>gi|127514172|ref|YP_001095369.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126639467|gb|ABO25110.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 238

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV VCP    ++ E    + +  + CI C  C   CP D ++ 
Sbjct: 95  CNNCDRPSCVSVCPTGATFKREQDGIVVVDSELCIGCNYCIQACPYDGVRF 145


>gi|219666358|ref|YP_002456793.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219536618|gb|ACL18357.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 189

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +  + +C  C+H  C E CP    ++      ++++ + CI C  C   CP  A + + 
Sbjct: 60  AFFTSISCNHCEHPKCTEACPSGAMHKDPETGIVSVNQNRCIGCRYCTWACPYGAPQYNK 119

Query: 60  E 60
           E
Sbjct: 120 E 120


>gi|330912249|gb|EGH40759.1| glutamate synthase [NADPH] small chain [Escherichia coli AA86]
          Length = 636

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 85


>gi|293415744|ref|ZP_06658387.1| hydrogenase-4 component A [Escherichia coli B185]
 gi|291433392|gb|EFF06371.1| hydrogenase-4 component A [Escherichia coli B185]
          Length = 205

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|288957573|ref|YP_003447914.1| formate dehydrogenase iron-sulfur subunit [Azospirillum sp. B510]
 gi|288909881|dbj|BAI71370.1| formate dehydrogenase iron-sulfur subunit [Azospirillum sp. B510]
          Length = 225

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPVDCFY+    +   + D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCKAVCPVDCFYQTAEGVVLHNKDLCIGCGYCFYACPFGAPQY 104


>gi|268591019|ref|ZP_06125240.1| nitrate reductase, beta subunit [Providencia rettgeri DSM 1131]
 gi|291313825|gb|EFE54278.1| nitrate reductase, beta subunit [Providencia rettgeri DSM 1131]
          Length = 513

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVATCPSGAIYKRSEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|225706152|gb|ACO08922.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Osmerus mordax]
          Length = 210

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|218700939|ref|YP_002408568.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI39]
 gi|218370925|emb|CAR18744.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI39]
          Length = 205

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|167771401|ref|ZP_02443454.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM
           17241]
 gi|167666041|gb|EDS10171.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM
           17241]
          Length = 403

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV    C+ C    C   C  D         +I   +C+ CG C   CPVDA++     
Sbjct: 225 PYVEQSVCVGC--GMCKRNCAHDAIAITNRKASIDHSKCVGCGRCIGACPVDAVQA---A 279

Query: 62  GLELWLKINSEYATQW 77
             E +  +N + +   
Sbjct: 280 QDEAFDILNKKISEYT 295


>gi|50120960|ref|YP_050127.1| respiratory nitrate reductase 1 subunit beta [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611486|emb|CAG74934.1| respiratory nitrate reductase 1 beta chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 526

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 181 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 239

Query: 59  TE 60
            +
Sbjct: 240 WK 241


>gi|194437650|ref|ZP_03069746.1| hydrogenase-4 component A [Escherichia coli 101-1]
 gi|253772627|ref|YP_003035458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162456|ref|YP_003045564.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli B str. REL606]
 gi|297517623|ref|ZP_06936009.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli OP50]
 gi|194423456|gb|EDX39447.1| hydrogenase-4 component A [Escherichia coli 101-1]
 gi|242378081|emb|CAQ32852.1| hydrogenase 4, component A, subunit of hydrogenase 4 [Escherichia
          coli BL21(DE3)]
 gi|253323671|gb|ACT28273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974357|gb|ACT40028.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli B str. REL606]
 gi|253978524|gb|ACT44194.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BL21(DE3)]
 gi|323961274|gb|EGB56886.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323970998|gb|EGB66247.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 205

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|308274768|emb|CBX31367.1| hypothetical protein N47_E48790 [uncultured Desulfobacterium sp.]
          Length = 943

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V TE+C+ C    CV  CP D       +  + I   +C  CGVC   CP  AI+ +   
Sbjct: 870 VDTEHCVKCL--TCVRSCPFDVPVFNIEKQIIEIDDAKCQGCGVCASVCPRQAIQLNYYE 927

Query: 62  GLELWLKINSEYA 74
             ++  KI++  A
Sbjct: 928 DNQITSKIDALLA 940



 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 20/75 (26%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------------IHPDECIDCG 44
           Y+    C  C   +C   CPV         L                   I  + CI CG
Sbjct: 42  YIDPVICTGC--GECARHCPVTAINRYNKGLDERRATFIEYPQAVPLAFGIDANTCIGCG 99

Query: 45  VCEPECPVDAIKPDT 59
           +CE  C   AI+ D 
Sbjct: 100 LCESMCVAKAIRYDD 114


>gi|293410876|ref|ZP_06654452.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471344|gb|EFF13828.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|261821824|ref|YP_003259930.1| nitrate reductase subunit beta [Pectobacterium wasabiae WPP163]
 gi|261605837|gb|ACX88323.1| nitrate reductase, beta subunit [Pectobacterium wasabiae WPP163]
          Length = 526

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 181 MMYL-PRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 239

Query: 59  TE 60
            +
Sbjct: 240 WK 241


>gi|162419562|ref|YP_001605308.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
          Angola]
 gi|167400476|ref|ZP_02305985.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
          [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|162352377|gb|ABX86325.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
          [Yersinia pestis Angola]
 gi|167049844|gb|EDR61252.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
          [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 652

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE   
Sbjct: 37 CHHCEDAPCASTCPNGAIVELNNRVQVIQEKCIGCKTCMIACPFGMMTVVTETVQ 91



 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL 33
          V+ E CI CK   C+  CP          +
Sbjct: 63 VIQEKCIGCK--TCMIACPFGMMTVVTETV 90


>gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 602

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCP  C       +  I    C+ CG C   C   AI   T
Sbjct: 541 SYVIDPEKCVGC--TACARVCPASCISGEVRKVHEIDQSACVKCGSCIEVCRFGAISKVT 598

Query: 60  E 60
            
Sbjct: 599 P 599


>gi|50554865|ref|XP_504841.1| YALI0F00924p [Yarrowia lipolytica]
 gi|6689658|emb|CAB65524.1| subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
           [Yarrowia lipolytica]
 gi|49650711|emb|CAG77643.1| YALI0F00924p [Yarrowia lipolytica]
          Length = 229

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPALAITIDAEERIDGSRRTTKYDIDMTKCIYCGYCQESCPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMD 94
             +T          N EYAT+     +  K++ L +  K +
Sbjct: 185 -VETP---------NVEYATETREELLYNKEKLLANGDKWE 215


>gi|150019644|ref|YP_001311898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149906109|gb|ABR36942.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 368

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C    C + C        +    I+  +C+ CG C   CP+DA+ P ++   
Sbjct: 192 VYEDKCVGC--GMCAKNCAHSAISLTDKKALINHSKCVGCGRCIGICPMDAVMPASDESN 249

Query: 64  ELWLKINSEYATQ-WPNITTK 83
           ++   +N + A   W  +  +
Sbjct: 250 DI---LNKKIAEYSWAVLNGR 267


>gi|113972044|ref|YP_735837.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886728|gb|ABI40780.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 553

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + + P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEVDPYLCHGAGSCSSACPTGAIGYDLPTPQALHSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKIINRYREQAQTAPVI 267



 Score = 41.9 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|157156854|ref|YP_001463806.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
 gi|157078884|gb|ABV18592.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++ + CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNENLCIGCKLCAVVCPFGAI 97


>gi|308051285|ref|YP_003914851.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
 gi|307633475|gb|ADN77777.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C++VCPV+ F + E+ +     + CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMKVCPVNVFSKTEDGIVLHDKERCIGCGYCLYACPFGA 103


>gi|260430249|ref|ZP_05784223.1| formate dehydrogenase iron-sulfur subunit [Citreicella sp. SE45]
 gi|260418721|gb|EEX11977.1| formate dehydrogenase iron-sulfur subunit [Citreicella sp. SE45]
          Length = 197

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ +  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|303316716|ref|XP_003068360.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240108041|gb|EER26215.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320038169|gb|EFW20105.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 232

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 130 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 187

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 188 VESP----------NAEYATETREELLYNKEKLLANGDKWESE 220


>gi|288573057|ref|ZP_06391414.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568798|gb|EFC90355.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 617

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             E CI CK+      CP   F E      I    C++CGVC   CP  AI    E
Sbjct: 561 DPEVCIGCKYCITSFNCPGLVFDESSKKAYIDERYCVNCGVCMSVCPHGAIVLREE 616


>gi|212710441|ref|ZP_03318569.1| hypothetical protein PROVALCAL_01503 [Providencia alcalifaciens DSM
           30120]
 gi|212686861|gb|EEB46389.1| hypothetical protein PROVALCAL_01503 [Providencia alcalifaciens DSM
           30120]
          Length = 194

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       ++F+ +   +CI C  C   CP   ++    P  +    
Sbjct: 71  CRQCEDAPCANVCPNGAISRKDDFVYVDQSKCIGCKTCVIACPYGTMEVIIRPVAQQTTA 130

Query: 69  INS 71
           +N+
Sbjct: 131 LNT 133


>gi|209737012|gb|ACI69375.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|169335612|ref|ZP_02862805.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258350|gb|EDS72316.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 56

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+T+ CI C    C   CPV    EG+    I    CIDCG C   CP  A +P+
Sbjct: 1  MAHVITDECISC--GACAGECPVGAISEGDGKYEIDAATCIDCGACAGACPTGAAQPE 56


>gi|114569913|ref|YP_756593.1| NADH dehydrogenase subunit I [Maricaulis maris MCS10]
 gi|122316117|sp|Q0APY2|NUOI_MARMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114340375|gb|ABI65655.1| NADH dehydrogenase subunit I [Maricaulis maris MCS10]
          Length = 162

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAEPRSDGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P  E   +   E          K + L +  + +    K
Sbjct: 118 V--EGPNFEFAAETREELF------YDKAKLLENGDRWEREIAK 153


>gi|89893102|ref|YP_516589.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89332550|dbj|BAE82145.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 190

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +  + +C  C+H  C E CP    ++      ++++ + CI C  C   CP  A + + 
Sbjct: 61  AFFTSISCNHCEHPKCTEACPSGAMHKDPETGIVSVNQNRCIGCRYCTWACPYGAPQYNK 120

Query: 60  E 60
           E
Sbjct: 121 E 121


>gi|55742238|ref|NP_001006930.1| NADH dehydrogenase ubiquinone Fe-S 8 [Xenopus (Silurana)
           tropicalis]
 gi|50416643|gb|AAH77660.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
 gi|89271932|emb|CAJ82191.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
          Length = 209

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 36/105 (34%), Gaps = 24/105 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 107 EERCIACKL--CEAVCPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 164

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQ 98
                         N E++  T    +  K++ L +  K +    
Sbjct: 165 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEVEIG 199


>gi|312135108|ref|YP_004002446.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          owensensis OL]
 gi|311775159|gb|ADQ04646.1| Fe-S cluster domain protein [Caldicellulosiruptor owensensis OL]
          Length = 443

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 10 DKDKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHA 57


>gi|289578036|ref|YP_003476663.1| Fe-S cluster domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527749|gb|ADD02101.1| Fe-S cluster domain protein [Thermoanaerobacter italicus Ab9]
          Length = 435

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 10 DKDRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|114049274|ref|YP_739824.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113890716|gb|ABI44767.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 553

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + + P  C   G C   CP  AI  D      L   +
Sbjct: 193 NGCN--RCLNFCPADAISSVAKKIEVDPYLCHGAGSCSSACPTGAIGYDLPTPQALHSYL 250

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 251 NKIINRYREQAQTAPVI 267



 Score = 41.9 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 421 EKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|116748324|ref|YP_845011.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697388|gb|ABK16576.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 381

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 5   VTENCILCKHTDCVEVC----------PVDCFYEGE---NFLAIHPDECIDCGVCEPECP 51
           + +NCI C    C + C          P D             I P  C+ C  C   CP
Sbjct: 191 ILKNCIGC--GVCRDQCAHEAIELVDRPEDAPRPEPKITQMARIDPRRCVGCAACIHACP 248

Query: 52  VDAIKPDTEPGLELWLKINSEY 73
             A++ D +  L  +++   EY
Sbjct: 249 QHALEVDWKTDLPRFMERMVEY 270


>gi|289620443|emb|CBI53016.1| unnamed protein product [Sordaria macrospora]
          Length = 221

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 119 EERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 176

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 177 VESP----------NAEYATETREELLYNKEKLLSNGDKWEPE 209


>gi|256111789|ref|ZP_05452760.1| NarH, respiratory nitrate reductase, beta subunit [Brucella
           melitensis bv. 3 str. Ether]
 gi|265993254|ref|ZP_06105811.1| nitrate reductase [Brucella melitensis bv. 3 str. Ether]
 gi|262764124|gb|EEZ10156.1| nitrate reductase [Brucella melitensis bv. 3 str. Ether]
          Length = 512

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|148557950|ref|YP_001257333.1| nitrate reductase subunit beta [Brucella ovis ATCC 25840]
 gi|148369235|gb|ABQ62107.1| nitrate reductase, beta subunit [Brucella ovis ATCC 25840]
          Length = 512

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|24375991|ref|NP_720034.1| formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
 gi|24350990|gb|AAN57478.1|AE015883_9 formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
          Length = 189

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ +     D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|140661|sp|P20925|YFRA_PROVU RecName: Full=Frd operon probable iron-sulfur subunit A
 gi|1333800|emb|CAA29509.1| unnamed protein product [Proteus vulgaris]
          Length = 157

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          C  C+   C  VCP       +++  +  D+CI C  C   CP   ++  + P +     
Sbjct: 34 CHQCEDAPCANVCPNGAIIHNKDYYYVDQDKCIGCKTCVLACPYGTMEVVSRPVMRKLTA 93

Query: 69 INS 71
          +N+
Sbjct: 94 LNT 96


>gi|46201601|ref|ZP_00208165.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 222

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C+EVCP     +  + L  I  D CI CG C   CP +A     +   
Sbjct: 58  CQHCDEPPCMEVCPSTATGKRADGLVTIDYDICIGCGYCAISCPYEARYKVDKADF 113


>gi|282856353|ref|ZP_06265632.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
 gi|282585724|gb|EFB91013.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
          Length = 649

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + CI CK       CP   F   E    I P +C+ C VC   CP  AI
Sbjct: 592 IDRKKCIGCKKCL-STGCPALSFDTRERKAVIDPMQCVGCTVCAQVCPRQAI 642


>gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
 gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
          Length = 599

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  E C+ C  T C  VCPV+           I P+ C  CG C   C  DAIK  + 
Sbjct: 544 IDEEKCVGC--TACARVCPVNGIIGDIRKPHRIDPEICTRCGSCIEVCRFDAIKKVSP 599



 Score = 33.8 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            + CP     +    + I  ++C+ C  C   CPV+ I  D      +  +I
Sbjct: 528 EKRCPAKRC-KELTRVVIDEEKCVGCTACARVCPVNGIIGDIRKPHRIDPEI 578


>gi|194218557|ref|XP_001498476.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) [Equus
           caballus]
          Length = 210

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|170683521|ref|YP_001744664.1| hydrogenase-4 component A [Escherichia coli SMS-3-5]
 gi|170521239|gb|ACB19417.1| hydrogenase-4 component A [Escherichia coli SMS-3-5]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|160934825|ref|ZP_02082211.1| hypothetical protein CLOLEP_03700 [Clostridium leptum DSM 753]
 gi|156866278|gb|EDO59650.1| hypothetical protein CLOLEP_03700 [Clostridium leptum DSM 753]
          Length = 580

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI CK   C+ + CP     + +    I   +C+ CGVCE  CP  AI
Sbjct: 525 VDNDKCIGCK--ACMAIGCP--AISQRDGKAVIDRTQCVGCGVCEGLCPKQAI 573


>gi|110643035|ref|YP_670765.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli 536]
 gi|110344627|gb|ABG70864.1| hypothetical protein YgfT (putative pyridine nucleotide-disulphide
           oxidoreductase) [Escherichia coli 536]
          Length = 639

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV       + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVYALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 83  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 140

Query: 62  GLEL 65
           GL+ 
Sbjct: 141 GLQQ 144


>gi|191173211|ref|ZP_03034742.1| protein aegA [Escherichia coli F11]
 gi|300995683|ref|ZP_07181211.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           200-1]
 gi|190906462|gb|EDV66070.1| protein aegA [Escherichia coli F11]
 gi|300304791|gb|EFJ59311.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           200-1]
 gi|323188716|gb|EFZ74001.1| hypothetical protein ECRN5871_3136 [Escherichia coli RN587/1]
 gi|324011765|gb|EGB80984.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           60-1]
          Length = 644

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV       + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVYALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
             + CI CK   C   CP       +       +          C   CP  A++   + 
Sbjct: 88  DEQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDK 145

Query: 62  GLEL 65
           GL+ 
Sbjct: 146 GLQQ 149


>gi|323936373|gb|EGB32663.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|319940638|ref|ZP_08014981.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
 gi|319806004|gb|EFW02762.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
          Length = 230

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + +  +C  C  + CV+VCP    +     N + ++ D C+ C  C   CP +A   + E
Sbjct: 93  HYIRVSCQQCVDSPCVKVCPTGACHHDPETNIVTMNTDRCVGCKYCIAACPYNARWINPE 152

Query: 61  PGLELWLKINSEYATQWPNITTKKES 86
                 +  N ++     N+   +  
Sbjct: 153 TK----VADNCDFCLHSKNLAAGELP 174


>gi|255942799|ref|XP_002562168.1| Pc18g03280 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586901|emb|CAP94552.1| Pc18g03280 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 220

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 118 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 175

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 176 VE----------TSNAEYATETREELLYNKEKLLSNGDKWEPE 208


>gi|320165166|gb|EFW42065.1| mitochondrial NADH:ubiquinone oxidoreductase complex I [Capsaspora
           owczarzaki ATCC 30864]
          Length = 230

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 128 EERCIACKL--CEAICPAMAITIEAEPRADGSRRTTRYDIDLTKCIYCGFCQEACPVDAI 185

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EYA  T    +  K + L +  K +  
Sbjct: 186 VEGP----------NFEYATETHEELLANKDKLLSNGDKWEPE 218


>gi|319638998|ref|ZP_07993756.1| ferredoxin [Neisseria mucosa C102]
 gi|317399902|gb|EFV80565.1| ferredoxin [Neisseria mucosa C102]
          Length = 282

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I  D  
Sbjct: 73  ALIDESACIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMV 128

Query: 61  PGLELWLKINSEYATQWPN 79
           P  + +L     ++T    
Sbjct: 129 PVSQPFLPSARRFSTSAEP 147



 Score = 34.2 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+++ C  C    CV  CPVDC   
Sbjct: 102 MHTVISDECTGC--GLCVTPCPVDCIDM 127


>gi|289578084|ref|YP_003476711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|297544357|ref|YP_003676659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527797|gb|ADD02149.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|296842132|gb|ADH60648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 56

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  A+K +
Sbjct: 1  MAHYITDECISC--GACAAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAVKAE 56


>gi|170019234|ref|YP_001724188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Escherichia coli ATCC 8739]
 gi|169754162|gb|ACA76861.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli ATCC 8739]
 gi|309702761|emb|CBJ02090.1| hydrogenase-4 component A [Escherichia coli ETEC H10407]
 gi|320200042|gb|EFW74631.1| Hydrogenase-4 component A [Escherichia coli EC4100B]
 gi|323941262|gb|EGB37447.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|332344300|gb|AEE57634.1| hydrogenase-4, subunit A HyfA [Escherichia coli UMNK88]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|11498837|ref|NP_070066.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Archaeoglobus fulgidus DSM
           4304]
 gi|2649346|gb|AAB90008.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Archaeoglobus fulgidus DSM
           4304]
          Length = 769

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            YV  E CI C+   C +VC  +     +    I+P+ C  CG+C   CP DAI  
Sbjct: 569 AYVDEEKCIGCR--ICEKVCEFNAVTV-DRKAKINPNACAMCGICVAACPADAIDM 621



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 19/78 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           YV    C  C   DC  VCPV+   E +  +                  AI  + CI C 
Sbjct: 237 YVDESKCKGCID-DCSSVCPVEIPNEFDYGIGVRKAIYIPIPQSTPLYAAIDWEHCIGCR 295

Query: 45  VCEPECPVDAIKPDTEPG 62
           +CE  C   A+    +P 
Sbjct: 296 LCEKACQPKAVDFSQQPE 313


>gi|163847096|ref|YP_001635140.1| cyclic nucleotide-binding protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524931|ref|YP_002569402.1| cyclic nucleotide-binding protein [Chloroflexus sp. Y-400-fl]
 gi|163668385|gb|ABY34751.1| cyclic nucleotide-binding [Chloroflexus aurantiacus J-10-fl]
 gi|222448810|gb|ACM53076.1| cyclic nucleotide-binding protein [Chloroflexus sp. Y-400-fl]
          Length = 477

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++C  C     CVEVCP D     +       + C  CG C   CP DA+
Sbjct: 353 VLDHCRQCSVGAECVEVCPEDAIERVDTGALRITNRCTGCGECVSACPYDAV 404


>gi|332800507|ref|YP_004462006.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332698242|gb|AEE92699.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
          Length = 382

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-IKPDTEPGLEL 65
           + CI C    CV+VCP        + + I    C+ CG C   C   A I P TE G + 
Sbjct: 197 DKCIRC--GQCVDVCPHGAIKLMNDCIVIDKSICVKCGRCSRVCEAKALIVPITEEGFQA 254


>gi|300855721|ref|YP_003780705.1| putative Fe-S-cluster-binding protein [Clostridium ljungdahlii DSM
           13528]
 gi|300435836|gb|ADK15603.1| predicted Fe-S-cluster-binding protein [Clostridium ljungdahlii DSM
           13528]
          Length = 204

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           Y +   C  C+   CV+VCP    Y+   +  + I  ++CI C  C   CP +
Sbjct: 53  YFLPVMCQQCEDPACVKVCPTGACYKRSEDGVIVIDKEKCIGCKSCHRACPYE 105


>gi|319761231|ref|YP_004125168.1| nitrate reductase, beta subunit [Alicycliphilus denitrificans BC]
 gi|330823098|ref|YP_004386401.1| nitrate reductase subunit beta [Alicycliphilus denitrificans K601]
 gi|317115792|gb|ADU98280.1| nitrate reductase, beta subunit [Alicycliphilus denitrificans BC]
 gi|329308470|gb|AEB82885.1| nitrate reductase, beta subunit [Alicycliphilus denitrificans K601]
          Length = 507

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|205353207|ref|YP_002227008.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272988|emb|CAR37935.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628293|gb|EGE34636.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 192

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAGCPFH 109


>gi|167534830|ref|XP_001749090.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772514|gb|EDQ86165.1| predicted protein [Monosiga brevicollis MX1]
          Length = 204

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 102 EERCIACKL--CEAVCPAQAITIETEPREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 159

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQK 99
                         N EY+T+     +  K++ L +  K +   QK
Sbjct: 160 VEGP----------NFEYSTETHQELLYNKEKLLSNGDKWEVEIQK 195


>gi|158520140|ref|YP_001528010.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158508966|gb|ABW65933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 325

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  V  E C  C   DCV  CPV      E+ + I    C+ CG+C  +CP +A+
Sbjct: 205 MPVVKKEACKKC--MDCVNRCPVKAISHQEDTITIDMGLCLGCGICTEKCPHEAM 257


>gi|307720678|ref|YP_003891818.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978771|gb|ADN08806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 187

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C EVCP    Y  EN +  ++ D+CI C  C   CP DA   D 
Sbjct: 64  CQHCDDAPCEEVCPTHATYYDENGVVRVNADKCILCSYCMNACPYDARYVDD 115


>gi|300930083|ref|ZP_07145509.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300462010|gb|EFK25503.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
          Length = 218

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|300857164|ref|YP_003782148.1| putative electron transfer flavoprotein subunit alpha
          [Clostridium ljungdahlii DSM 13528]
 gi|300437279|gb|ADK17046.1| predicted electron transfer flavoprotein alpha subunit
          [Clostridium ljungdahlii DSM 13528]
          Length = 429

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M  ++T++CI C+   C+ +CP D     GE  L    ++C +CG C   CPV A+ 
Sbjct: 1  MAVIITDSCIGCE--SCIPICPFDALGINGEGKLVASKEKCTECGKCVSVCPVSALN 55


>gi|296102249|ref|YP_003612395.1| nitrate reductase 2, beta subunit [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056708|gb|ADF61446.1| nitrate reductase 2, beta subunit [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 514

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
 gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
          Length = 526

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y + E CI C    C  +CP      E  N   I+ D+CI CG C+  CP+DAI 
Sbjct: 472 YDIGEACIGC--GKCKRLCPAQAISGEVRNKHEINQDKCIKCGQCKENCPIDAIC 524


>gi|225414543|ref|ZP_03761732.1| hypothetical protein CLOSTASPAR_05766 [Clostridium asparagiforme
           DSM 15981]
 gi|225041922|gb|EEG52168.1| hypothetical protein CLOSTASPAR_05766 [Clostridium asparagiforme
           DSM 15981]
          Length = 367

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  E C+ C    C + C        +   +I   +C+ CG C   CP+DA+    + 
Sbjct: 189 PFVNQELCVGC--GSCKKNCAHGAITIEDRKASIDVSKCVGCGRCIGACPLDAVDSMCDE 246

Query: 62  GLELWLKINSEYATQ-WPNITTK 83
             ++   +N + A   W  +  +
Sbjct: 247 ANDI---LNKKIAEYTWAVLKDR 266


>gi|156937594|ref|YP_001435390.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ignicoccus hospitalis KIN4/I]
 gi|156566578|gb|ABU81983.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Ignicoccus
           hospitalis KIN4/I]
          Length = 219

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C  VCP    Y  ++ +  +  ++CI CG C   CP  A   D
Sbjct: 107 CRHCEDAPCAHVCPTRATYVTKDGVVMVDKNKCILCGACIVACPYAARGVD 157


>gi|94265631|ref|ZP_01289373.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93453841|gb|EAT04204.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 291

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C  VCPV+         + +  D+CI C  C   CP    + D +  
Sbjct: 100 CQHCRKPACARVCPVNAISRLPEGPVVVVEDKCIGCRYCYQACPFSVPELDFDER 154


>gi|56476992|ref|YP_158581.1| benzoyl-CoA oxygenase component A [Aromatoleum aromaticum EbN1]
 gi|56313035|emb|CAI07680.1| Benzoyl-CoA oxygenase component A [Aromatoleum aromaticum EbN1]
          Length = 416

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  E CI C    C E CP+D          ++ D C  C  C P CP  AI        
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDNLNYVVNFDICNGCLACVPPCPTGAI-------- 64

Query: 64 ELWLKINSEYATQWPNITTKK-ESLPSAAKMDGV 96
          + W   N E A  +      K + LP   ++D V
Sbjct: 65 DSW--RNVERAKPYSLEEQFKWDVLPDTTELDNV 96


>gi|308152250|emb|CBI83544.1| NUIM (TYKY) subunit of mitochondrial NADH:ubiquinone oxidoreductase
           (complex I) [Pichia pastoris]
 gi|328353143|emb|CCA39541.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Pichia pastoris CBS
           7435]
          Length = 222

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 120 EERCIACKL--CEAVCPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 177

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
             +T          N EYAT+     +  K++ L +  K +  
Sbjct: 178 -VETP---------NVEYATETREELLYNKEKLLANGDKWEQE 210


>gi|294491165|gb|ADE89921.1| protein aegA [Escherichia coli IHE3034]
          Length = 636

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 85


>gi|238753089|ref|ZP_04614541.1| Hydrogenase-2 operon protein hybA [Yersinia rohdei ATCC 43380]
 gi|238708700|gb|EEQ00966.1| Hydrogenase-2 operon protein hybA [Yersinia rohdei ATCC 43380]
          Length = 346

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D +  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYDYDNP 172

Query: 63  LEL 65
              
Sbjct: 173 FGK 175


>gi|288550044|ref|ZP_05969087.2| putative anaerobic DMSO reductase chain B iron-sulfur subunit
          [Enterobacter cancerogenus ATCC 35316]
 gi|288316529|gb|EFC55467.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
          [Enterobacter cancerogenus ATCC 35316]
          Length = 166

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C+  CPV+ + + ++ + + +P+ CI C  C   CP  A + + E     
Sbjct: 37 ACNHCENPACLAACPVEAYTKRDDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETQKAE 95


>gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
 gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
          Length = 628

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C   CPV       G+    I  D+CI CG C   C   A+K D
Sbjct: 574 IDPEKCRKCSM--CARNCPVGAISGVPGQKPYVIDHDKCIKCGACMETCRFGAVKRD 628


>gi|222109648|ref|YP_002551912.1| nitrate reductase subunit beta [Acidovorax ebreus TPSY]
 gi|221729092|gb|ACM31912.1| nitrate reductase, beta subunit [Acidovorax ebreus TPSY]
          Length = 507

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|83592762|ref|YP_426514.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|399277|sp|P31894|COOF_RHORU RecName: Full=Iron-sulfur protein
 gi|1498747|gb|AAC45122.1| iron sulfur protein [Rhodospirillum rubrum]
 gi|83575676|gb|ABC22227.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 190

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C   CP     + +  + I    CI C +C   CP  AI   +E  +E 
Sbjct: 65  CRQCEDAPCTFACPTGACRQADGQVQIVEQHCIGCKLCVMVCPFGAITVRSETVVEQ 121


>gi|89109287|ref|AP_003067.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          W3110]
 gi|90111444|ref|NP_416976.4| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|170082091|ref|YP_001731411.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|238901646|ref|YP_002927442.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BW2952]
 gi|256021833|ref|ZP_05435698.1| hydrogenase 4, 4Fe-4S subunit [Escherichia sp. 4_1_40B]
 gi|301023842|ref|ZP_07187575.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|307139115|ref|ZP_07498471.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli H736]
 gi|140645|sp|P23481|HYFA_ECOLI RecName: Full=Hydrogenase-4 component A
 gi|147018|gb|AAB88563.1| HyfA [Escherichia coli]
 gi|1799909|dbj|BAA16359.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K12 substr.
          W3110]
 gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|169889926|gb|ACB03633.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|238861459|gb|ACR63457.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BW2952]
 gi|260448440|gb|ACX38862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli DH1]
 gi|299880642|gb|EFI88853.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|315137104|dbj|BAJ44263.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli DH1]
 gi|315615724|gb|EFU96356.1| hydrogenase-4 component A [Escherichia coli 3431]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|327311122|ref|YP_004338019.1| Formate dehydrogenase subunit beta [Thermoproteus uzoniensis
           768-20]
 gi|326947601|gb|AEA12707.1| Formate dehydrogenase, beta subunit [Thermoproteus uzoniensis
           768-20]
          Length = 281

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           C+ C +  C   CP           + I+ D+CI CG CE  CP D
Sbjct: 95  CMHCVNPPCARACPSGAISVTPEGAVVINKDQCIGCGFCENACPYD 140


>gi|322655203|gb|EFY51512.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
          Length = 171

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
           Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 33 AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 87


>gi|331664038|ref|ZP_08364948.1| hydrogenase-4 component A [Escherichia coli TA143]
 gi|331059837|gb|EGI31814.1| hydrogenase-4 component A [Escherichia coli TA143]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|283786992|ref|YP_003366857.1| oxidoreductase, 4Fe-4S subunit [Citrobacter rodentium ICC168]
 gi|282950446|emb|CBG90108.1| putative oxidoreductase, 4Fe-4S subunit [Citrobacter rodentium
           ICC168]
          Length = 158

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  CV+ CPV     G   +      CI C  C   CP  AI  +T 
Sbjct: 51  CHQCENAPCVKACPVGALTMGPERVEADAGRCIACQSCVVACPFGAITIETP 102


>gi|145255608|ref|XP_001399017.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134084609|emb|CAK97485.1| unnamed protein product [Aspergillus niger]
          Length = 224

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 122 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAI 179

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 180 VE----------TSNAEYATETREELLYNKEKLLANGDKWEPE 212


>gi|119719691|ref|YP_920186.1| thiamine pyrophosphate binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524811|gb|ABL78183.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA [Thermofilum
           pendens Hrk 5]
          Length = 623

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           YV  E C+ C    CV+   CP     E +  + I P+ C+ CGVC   CP  AI P
Sbjct: 564 YVDQERCVRC--GICVDKFSCPAI-VREEDGRVVILPEVCVGCGVCATICPAKAIHP 617


>gi|224582445|ref|YP_002636243.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224466972|gb|ACN44802.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 179

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 50  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 108


>gi|254173867|ref|ZP_04880538.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermococcus sp. AM4]
 gi|214032116|gb|EEB72947.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermococcus sp. AM4]
          Length = 237

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           + V   C  C+   C++ CP     + E    + +P+ CI C +C   CP    K + E 
Sbjct: 89  FNVPMRCQHCEDAPCMKACPTGAISKTEEGFVVLNPNMCIGCLMCVMACPFGHPKYEPEY 148

Query: 62  G 62
            
Sbjct: 149 K 149


>gi|206900688|ref|YP_002250628.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12]
 gi|206739791|gb|ACI18849.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12]
          Length = 443

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C H  C+  CP +          I P  CIDCG C   CP  A
Sbjct: 14 QRCRGCIH--CIRHCPTEAMRVRNGKSLIIPYRCIDCGECIRVCPYHA 59


>gi|117619514|ref|YP_857564.1| formate dehydrogenase iron-sulfur subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560921|gb|ABK37869.1| formate dehydrogenase iron-sulfur subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 207

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYHTDDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|121592868|ref|YP_984764.1| respiratory nitrate reductase subunit beta [Acidovorax sp. JS42]
 gi|120604948|gb|ABM40688.1| respiratory nitrate reductase beta subunit [Acidovorax sp. JS42]
          Length = 507

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|118579705|ref|YP_900955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118502415|gb|ABK98897.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 264

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV +CP      G          CI C  C  ECP  A     E   E  + 
Sbjct: 193 CIRC--GTCVRICPTAAISSGVGMPT-DLVACIACCACVRECPTGARVMRDERIREKAVW 249

Query: 69  INSEYATQWPNIT 81
           +N + A +    T
Sbjct: 250 LNEKCAERKEPQT 262


>gi|312127646|ref|YP_003992520.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777665|gb|ADQ07151.1| Fe-S cluster domain protein [Caldicellulosiruptor hydrothermalis
          108]
          Length = 443

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E C  C  T+C++ CP +      +   I    CIDCG C   CP  A    T+   E
Sbjct: 10 DKEKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHAKYAITDSLEE 67


>gi|301060755|ref|ZP_07201570.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445152|gb|EFK09102.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 254

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVD 53
           Y+  E C  C    C   CPVD    G+N    I  ++CI CG C   CP  
Sbjct: 176 YIDPEKCKAC--MICARSCPVDAIVGGKNLIHVIDQEKCIKCGTCFEACPPK 225


>gi|255526336|ref|ZP_05393251.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296187009|ref|ZP_06855409.1| putative dimethylsulfoxide reductase, chain B [Clostridium
           carboxidivorans P7]
 gi|255509984|gb|EET86309.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296048447|gb|EFG87881.1| putative dimethylsulfoxide reductase, chain B [Clostridium
           carboxidivorans P7]
          Length = 183

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPV 52
           Y ++  C  C +  CV+ CP       + +  + I+ ++C+ C  C   CP 
Sbjct: 52  YFISMACNHCANPACVKACPTGACNKRKEDGIVVINKEKCVGCRKCVKACPY 103


>gi|229826121|ref|ZP_04452190.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC
           49176]
 gi|229789694|gb|EEP25808.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC
           49176]
          Length = 507

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VT+ C  C    CVEVCP  C           I  D CI CG C   CP  A+     P
Sbjct: 116 FVTDGCQGCLAHPCVEVCPKTCVSLDRTNGRSKIDQDVCIKCGKCAEVCPYHAVIIQERP 175



 Score = 38.8 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVC 46
           +  + CI C    C EVCP       E                     I  ++C+ CG C
Sbjct: 149 IDQDVCIKC--GKCAEVCPYHAVIIQERPCAAACGMDAIHSDVHGKADIDYEKCVSCGQC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|291288005|ref|YP_003504821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885165|gb|ADD68865.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 203

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    CVEVCP     +  +  + +   ECI C  C   CP  A   + E     W 
Sbjct: 57  CNHCDDAPCVEVCPTGASKKLADGTVQVTASECIGCQACMEACPYGARYFNEEEKPTYWS 116

Query: 68  K 68
           +
Sbjct: 117 E 117


>gi|291326676|ref|ZP_06125402.2| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291313411|gb|EFE53864.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 206

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV  CP    ++ E    + +    C+ C  CE  CP  A + D 
Sbjct: 60  SYYLSISCNHCSNPTCVAGCPTGAMHKREEDGLVVVDQSICVGCRYCELRCPYGAPQFDE 119

Query: 60  E 60
           +
Sbjct: 120 K 120


>gi|182420065|ref|ZP_02951299.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237666800|ref|ZP_04526785.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182376102|gb|EDT73689.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237657999|gb|EEP55554.1| ferredoxin, 4Fe-4S [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 56

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  MAFVINDSCVSC--GACAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGAPVQE 56


>gi|156039527|ref|XP_001586871.1| hypothetical protein SS1G_11900 [Sclerotinia sclerotiorum 1980]
 gi|154697637|gb|EDN97375.1| hypothetical protein SS1G_11900 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 229

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 185 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 217


>gi|119898238|ref|YP_933451.1| phenylacetyl-CoA:acceptor oxidoreductase [Azoarcus sp. BH72]
 gi|119670651|emb|CAL94564.1| conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase
           [Azoarcus sp. BH72]
          Length = 215

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C+EVCP     + ++ +  I  D CI C  C   CP  A      P  
Sbjct: 58  CQHCSDPPCMEVCPSTATGQRKDGIVTIDYDICIGCSYCAVACPYQARYKVETPRF 113


>gi|304314927|ref|YP_003850074.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588386|gb|ADL58761.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 376

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    CVE CP D    G          CI+C  C   CP  A   D
Sbjct: 308 IDPERCRNCN--VCVESCPADALKSGALVPEFDYSSCINCLCCMEVCPHRAFYQD 360


>gi|266619158|ref|ZP_06112093.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           hathewayi DSM 13479]
 gi|288869304|gb|EFD01603.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           hathewayi DSM 13479]
          Length = 425

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C+ C    C +VCPV          G+    ++ + C+ CGVC   C V AI+    P
Sbjct: 293 ERCVGC--GKCAKVCPVLAVSMEEGENGKKKAVVNKEICLGCGVCARNCAVKAIELQRRP 350

Query: 62  GL 63
             
Sbjct: 351 EQ 352


>gi|152971333|ref|YP_001336442.1| putative oxidoreductase Fe-S binding subunit [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956182|gb|ABR78212.1| putative oxidoreductase, Fe-S subunit (anaerobically expressed
          gene) [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
          Length = 637

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C+   CV  CP D   +  + + +  ++CI C  C   CP   ++    P 
Sbjct: 33 CRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFGVMQVVVTPQ 86


>gi|126665819|ref|ZP_01736800.1| respiratory nitrate reductase beta chain [Marinobacter sp. ELB17]
 gi|126629753|gb|EBA00370.1| respiratory nitrate reductase beta chain [Marinobacter sp. ELB17]
          Length = 519

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|219849153|ref|YP_002463586.1| cyclic nucleotide-binding protein [Chloroflexus aggregans DSM 9485]
 gi|219543412|gb|ACL25150.1| cyclic nucleotide-binding protein [Chloroflexus aggregans DSM 9485]
          Length = 477

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 5   VTENCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V ++C  C     CVE CP D     +       + C  CG C   CP DA++       
Sbjct: 353 VLDSCRQCSVGAECVEACPEDAIERVDTGALRITNRCTGCGECVTACPYDAVQTVPRAKY 412

Query: 64  EL---WLKINSEYATQWPNITTKKESLP 88
           +    W     +   +W         L 
Sbjct: 413 QTGPLW-----DLFRRWQQRIRPTIPLA 435


>gi|238796067|ref|ZP_04639578.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC
           43969]
 gi|238720012|gb|EEQ11817.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC
           43969]
          Length = 693

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 24/65 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE       +
Sbjct: 68  CHHCEDAPCASTCPNGAIVEMNNSIQVIQEKCIGCKTCMIACPFGMMTVVTETVQPASHR 127

Query: 69  INSEY 73
           +   Y
Sbjct: 128 LADAY 132



 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           V+ E CI CK   C+  CP          +
Sbjct: 94  VIQEKCIGCK--TCMIACPFGMMTVVTETV 121


>gi|120555995|ref|YP_960346.1| nitrate reductase, beta subunit [Marinobacter aquaeolei VT8]
 gi|120325844|gb|ABM20159.1| respiratory nitrate reductase beta subunit [Marinobacter aquaeolei
           VT8]
          Length = 525

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|333001982|gb|EGK21548.1| protein aegA [Shigella flexneri K-218]
          Length = 659

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|300940277|ref|ZP_07154874.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300454918|gb|EFK18411.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 218

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|256839685|ref|ZP_05545194.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|256738615|gb|EEU51940.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
          Length = 301

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LEL 65
            CI C    CV  CP       E  +      C  CG C   CP  A++         E+
Sbjct: 51  KCIGC--GACVNACPTGALTLTEAGIVTDRSLCRTCGRCAEVCPTLAMEMSGREYSIDEV 108

Query: 66  WLKINSE 72
             +I  E
Sbjct: 109 MREIEKE 115


>gi|170743754|ref|YP_001772409.1| nitrate reductase subunit beta [Methylobacterium sp. 4-46]
 gi|168198028|gb|ACA19975.1| nitrate reductase, beta subunit [Methylobacterium sp. 4-46]
          Length = 509

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGVVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|114320162|ref|YP_741845.1| respiratory nitrate reductase beta subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226556|gb|ABI56355.1| respiratory nitrate reductase beta subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 527

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  + 
Sbjct: 182 CEHCLNPSCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYNW 234


>gi|301064797|ref|ZP_07205171.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441091|gb|EFK05482.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 254

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVD 53
           Y+  E C  C    C   CPVD    G+N    I  ++CI CG C   CP  
Sbjct: 176 YIDPEKCKAC--MICARSCPVDAIVGGKNLIHVIDQEKCIKCGTCFEACPPK 225


>gi|157737738|ref|YP_001490421.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|157737750|ref|YP_001490434.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|315637769|ref|ZP_07892966.1| formate dehydrogenase [Arcobacter butzleri JV22]
 gi|157699592|gb|ABV67752.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|157699604|gb|ABV67764.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|315477939|gb|EFU68675.1| formate dehydrogenase [Arcobacter butzleri JV22]
          Length = 197

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCP DCFY   + +     D+CI CG C   CP  A
Sbjct: 61  ACMHCADAPCQQVCPTDCFYIRTDGIVLHDKDKCIGCGYCLFACPFGA 108


>gi|117621401|ref|YP_857038.1| hydrogenase 2 protein HybA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562808|gb|ABK39756.1| hydrogenase-2 operon protein HybA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 341

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +
Sbjct: 109 IKKQCMHCVDPNCVSVCPVQALTKDPKTGIVHYDPDVCTGCRYCMVGCPFDVPKYDYD 166


>gi|332087907|gb|EGI93032.1| protein aegA [Shigella boydii 5216-82]
          Length = 606

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 3  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 55


>gi|328947842|ref|YP_004365179.1| methyl-accepting chemotaxis sensory transducer [Treponema
          succinifaciens DSM 2489]
 gi|328448166|gb|AEB13882.1| methyl-accepting chemotaxis sensory transducer [Treponema
          succinifaciens DSM 2489]
          Length = 698

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          V  E C+ C    C+ VCPV     G           CI CG C   C   A K   +
Sbjct: 18 VDKEKCVNC--QRCIAVCPVKMCNNGSGDYVDFDEKLCIGCGSCIEACTHGARKGIDD 73


>gi|239905007|ref|YP_002951746.1| Hme subunit A [Desulfovibrio magneticus RS-1]
 gi|239794871|dbj|BAH73860.1| Hme subunit A [Desulfovibrio magneticus RS-1]
          Length = 258

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   CV+VCP    ++  + +  +    CI C  C   CP  A   + +       
Sbjct: 121 CNQCEAPMCVKVCPTQATFQRPDGIVMMDFHRCIGCRYCMAGCPFGARSFNFQDPRPFIK 180

Query: 68  KIN 70
             N
Sbjct: 181 SFN 183


>gi|158522645|ref|YP_001530515.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511471|gb|ABW68438.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 392

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             + C  C    CV  C +      E    +   +CI CG+C   C   AI+ +
Sbjct: 297 DNDACNGC--GVCVRRCQMGAIEVKEKKAHLDVGKCIGCGLCVTTCKTGAIRLE 348


>gi|76666615|emb|CAJ31136.1| Hdr-like menaquinol-oxidizing enzyme, subunit A (HmeA) [uncultured
           sulfate-reducing bacterium]
          Length = 271

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C +  C  VCP +  ++   +  + +    CI C  C   CP  +   + +      
Sbjct: 107 CNHCDNPPCTRVCPTEATWKRESDGVVMMDWHRCIGCRYCIVACPYGSRSFNFKDPRTA- 165

Query: 67  LKINSEYATQWPNITTK 83
               +  A   P   T+
Sbjct: 166 ----ANLAEPVPTFPTR 178


>gi|33601105|ref|NP_888665.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           bronchiseptica RB50]
 gi|33575540|emb|CAE32618.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           bronchiseptica RB50]
          Length = 209

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  +   + D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGA 101


>gi|33596552|ref|NP_884195.1| formate dehydrogenase iron-sulfur subunit [Bordetella parapertussis
           12822]
 gi|33566321|emb|CAE37234.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           parapertussis]
          Length = 209

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  +   + D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGA 101


>gi|325832581|ref|ZP_08165409.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325485986|gb|EGC88445.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 207

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           M Y +T  C  C++  C +VCPV   Y+      +    D+CI C +C   CP  
Sbjct: 58  MRY-ITVGCQHCENPACTKVCPVGATYKDPETGVVRQDYDKCIGCRMCMAACPYT 111


>gi|302871907|ref|YP_003840543.1| Fe-S cluster domain protein [Caldicellulosiruptor obsidiansis
          OB47]
 gi|302574766|gb|ADL42557.1| Fe-S cluster domain protein [Caldicellulosiruptor obsidiansis
          OB47]
          Length = 443

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 10 DKDKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHA 57


>gi|302343816|ref|YP_003808345.1| electron transfer flavoprotein alpha/beta-subunit [Desulfarculus
          baarsii DSM 2075]
 gi|301640429|gb|ADK85751.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfarculus
          baarsii DSM 2075]
          Length = 405

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  ++ +N C  C    CV+ CP     E  + +A+  D C  CG C   CP  AI  D 
Sbjct: 1  MALIIDKNLCTGC--GSCVDACPFGAM-ELHDGVAVAGDGCTLCGACVDACPESAIGLDE 57

Query: 60 EPGLE 64
            G +
Sbjct: 58 PAGEQ 62


>gi|298242537|ref|ZP_06966344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297555591|gb|EFH89455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 342

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++ C  C +  C E CP       E   + +  D C  CG C   CP   I  D 
Sbjct: 162 SDVCKHCANAPCQEACPTGAIIRTEFDTVYVQQDICNGCGYCTVACPFGVIARDD 216


>gi|288559910|ref|YP_003423396.1| ferredoxin [Methanobrevibacter ruminantium M1]
 gi|288542620|gb|ADC46504.1| ferredoxin [Methanobrevibacter ruminantium M1]
          Length = 291

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++NC +CK     ++C         + + I  ++C+ CG C   C  +AI
Sbjct: 216 ISDNCKMCKKCLGDDICFGGAISLENDKITIDQNKCVGCGHCVQTCKFNAI 266


>gi|302873024|ref|YP_003841657.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B]
 gi|307688817|ref|ZP_07631263.1| ferredoxin, 4Fe-4S [Clostridium cellulovorans 743B]
 gi|302575881|gb|ADL49893.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B]
          Length = 56

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M YV+ ++CI C    C   CPV    +G+    I+   CIDCG C   CPV A
Sbjct: 1  MAYVINDSCISC--GACASECPVSAINQGDAQYEINDSSCIDCGNCANVCPVGA 52


>gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 596

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +YV+  + C  C  T C   CP        +N   I  ++CI CG C  +C   AI 
Sbjct: 540 SYVIDRDKCRGC--TLCARTCPAGAIVGSVKNPHVIDLNKCIKCGACMEKCKFGAIY 594


>gi|189465837|ref|ZP_03014622.1| hypothetical protein BACINT_02199 [Bacteroides intestinalis DSM
           17393]
 gi|189434101|gb|EDV03086.1| hypothetical protein BACINT_02199 [Bacteroides intestinalis DSM
           17393]
          Length = 373

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + TENCI C    CV+ C  D  +        I   +C+ CG C   C  D      E  
Sbjct: 191 IDTENCIGCN--ICVKHCAHDAVHLNAGRKAEIDYAKCVGCGQCVALCQYDGAIMGDEDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N + A     +   K 
Sbjct: 249 SER---LNYKIAEYSLAVVKDKP 268


>gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 650

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V  E CI C    C + C V   Y        I P++C+ C  C   CP +AI 
Sbjct: 571 VDEERCIAC--GLCAKACTVQAIYGEPKKPYRIDPEKCVKCAACVARCPRNAIM 622



 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CP     +      +  + CI CG+C   C V AI  + +    
Sbjct: 556 KTCPAGVC-KALLDYRVDEERCIACGLCAKACTVQAIYGEPKKPYR 600


>gi|157963947|ref|YP_001503981.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848947|gb|ABV89446.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 195

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ +   + + CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKETCIGCGYCFYACPFGA 103


>gi|148652478|ref|YP_001279571.1| nitrate reductase subunit beta [Psychrobacter sp. PRwf-1]
 gi|148571562|gb|ABQ93621.1| respiratory nitrate reductase beta subunit [Psychrobacter sp.
           PRwf-1]
          Length = 512

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|6644291|gb|AAF20994.1|AF208000_2 ferrodoxin [Pseudomonas syringae pv. syringae]
          Length = 38

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           ++N+E A  WPNIT KK+++P AA+ DG   K    
Sbjct: 1   ELNAELAEIWPNITEKKDAMPDAAEWDGKTGKIADL 36


>gi|55981733|ref|YP_145030.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Thermus
           thermophilus HB8]
 gi|55773146|dbj|BAD71587.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Thermus
           thermophilus HB8]
          Length = 876

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C  VCPV         L  +  + C+    C   CP  A + +  P  E ++
Sbjct: 692 CQHCEKAPCEAVCPVAATEHSPEGLNLMVYNRCVGTKYCSANCPYKARRFNFFPYAEAFI 751


>gi|320640865|gb|EFX10353.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           G5101]
          Length = 209

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    ++  G+  + ++ D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSVSCNHCADPICTKNCPTMAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMNE 130

Query: 60  EPGLE 64
           + G  
Sbjct: 131 QTGQM 135


>gi|320354225|ref|YP_004195564.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122727|gb|ADW18273.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 617

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +    C  C    C+  CPV     E +   AI    CI CG C   C  +A+  D
Sbjct: 564 IDPARCTGC--GACLRACPVAAISGEKKQPHAIDQQLCIQCGSCRQACKFEAVLVD 617



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            I P  C  CG C   CPV AI  +
Sbjct: 551 CPAGACR-ALIRFDIDPARCTGCGACLRACPVAAISGE 587


>gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
 gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
          Length = 597

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV E C  C    C + CPVD   +E + F  I  ++C+ C  C   CP +AI
Sbjct: 546 VVNERCKKC--GLCKKACPVDAITWEKKQFAVIDNEKCVKCRECIVNCPFNAI 596


>gi|225023979|ref|ZP_03713171.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC
           23834]
 gi|224943004|gb|EEG24213.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC
           23834]
          Length = 291

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+    CI C  T C++ CPVD      +    +  DEC  CG+C P CPVD I+    
Sbjct: 75  AYIDETACIGC--TACIKACPVDAILGASKLMHTVLADECTGCGLCLPPCPVDCIRMQPV 132

Query: 61  PG 62
           P 
Sbjct: 133 PD 134


>gi|324118175|gb|EGC12072.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|294101031|ref|YP_003552889.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
 gi|293616011|gb|ADE56165.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
          Length = 292

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + TE C +C    CV  C  +   +  N + + P +C  CG C   CP  AI   +    
Sbjct: 66  IDTERCTVC--GGCVGFCRFNALEKANNGITLLPWKCEGCGGCALVCPHQAISMHSYEQG 123

Query: 64  ELW 66
           + W
Sbjct: 124 QYW 126


>gi|262382027|ref|ZP_06075165.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_33B]
 gi|262297204|gb|EEY85134.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_33B]
          Length = 301

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LEL 65
            CI C    CV  CPV      +  +      C  CG C   CP  A++         E+
Sbjct: 51  KCIGC--GACVNACPVGALTLTQAGIVTDRSLCRTCGRCAEVCPTLAMEMSGREYSIDEV 108

Query: 66  WLKINSE 72
             +I  E
Sbjct: 109 MREIEKE 115


>gi|239933594|ref|ZP_04690547.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces ghanaensis
           ATCC 14672]
          Length = 338

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + + PD C  CG C   CP   I    + 
Sbjct: 157 SDVCKHCTHAGCLDVCPTGALFRTEFGSVVVQPDICNGCGYCVSGCPYGVIDRRPDD 213


>gi|298530393|ref|ZP_07017795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509767|gb|EFI33671.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 251

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV--DAIKPDTEPGLEL 65
           C  C +  CV VCP    +  ++ +  +    CI C  C   CP    +           
Sbjct: 112 CNHCDNPPCVRVCPTQATFSRDDGIVLMDFHRCIGCRFCMAGCPYGSRSFNYYDPRKFLD 171

Query: 66  WLKINSEYATQWPNITTKKE 85
             +++ +Y T+   +  K E
Sbjct: 172 DDELDHDYPTREMGVVEKCE 191


>gi|239624057|ref|ZP_04667088.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522088|gb|EEQ61954.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 366

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C+ C    CV  C            +I    C  CG C   CP+DA+  D   
Sbjct: 188 PHVDAGLCVGC--GACVRQCAHGAITLESGKASIDTAVCAGCGRCIGTCPMDAVAADNNE 245

Query: 62  GLELWLKINSEYATQ 76
             ++   +N + A  
Sbjct: 246 ANDI---LNKKIAEY 257


>gi|198283943|ref|YP_002220264.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667094|ref|YP_002426577.1| sulfur reductase, iron-sulfur binding subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248464|gb|ACH84057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519307|gb|ACK79893.1| sulfur reductase, iron-sulfur binding subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 207

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV VCP    ++  N +  ++PD C+ C  C   CP DA  P     ++ 
Sbjct: 61  CNHCDNPPCVSVCPTGATWKEANGIVRVNPDICMGCQACAMACPYDARYPADSNDIDK 118


>gi|182415488|ref|YP_001820554.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177842702|gb|ACB76954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 665

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDT 59
            Y+  E C  CK   C+ +CP       E      I+   C  CG C   CP  +I  + 
Sbjct: 592 AYIAAEECSGCK--SCIGLCPYTAITFDETKQVASINAALCKGCGTCVAACPSGSIHQNL 649

Query: 60  EPGLELWLKI 69
               +++ +I
Sbjct: 650 FEDQQVFSEI 659


>gi|238790269|ref|ZP_04634043.1| Hydrogenase-2 operon protein hybA [Yersinia frederiksenii ATCC
           33641]
 gi|238721619|gb|EEQ13285.1| Hydrogenase-2 operon protein hybA [Yersinia frederiksenii ATCC
           33641]
          Length = 346

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D +  
Sbjct: 107 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYDYDNP 166

Query: 63  LEL 65
              
Sbjct: 167 FGK 169


>gi|329964944|ref|ZP_08301952.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328524585|gb|EGF51653.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 486

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP    +  E+    I  D CI CG+C   CP  AI     P
Sbjct: 116 YEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAIVYIPVP 175

Query: 62  GLEL 65
             E 
Sbjct: 176 CEEA 179



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    +    +  I  ++CI CG C
Sbjct: 147 AWIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDAKGIEHIDENKCIYCGKC 206

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 207 LNACPFGAIF 216


>gi|317488732|ref|ZP_07947268.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912163|gb|EFV33736.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 207

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           M Y +T  C  C++  C +VCPV   Y+      +    D+CI C +C   CP  
Sbjct: 58  MRY-ITVGCQHCENPACTKVCPVGATYKDPETGVVRQDYDKCIGCRMCMAACPYT 111


>gi|254571471|ref|XP_002492845.1| hypothetical protein [Pichia pastoris GS115]
 gi|238032643|emb|CAY70666.1| Hypothetical protein PAS_chr3_0619 [Pichia pastoris GS115]
          Length = 211

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 109 EERCIACKL--CEAVCPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 166

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
             +T          N EYAT+     +  K++ L +  K +  
Sbjct: 167 -VETP---------NVEYATETREELLYNKEKLLANGDKWEQE 199


>gi|254459320|ref|ZP_05072741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Campylobacterales bacterium GD 1]
 gi|207083933|gb|EDZ61224.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Campylobacterales bacterium GD 1]
          Length = 522

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C   +C++ CP + + +      +    D CI C  C   CP +      E
Sbjct: 88  SCNHCIDPECLKGCPTNSYIKISETGIVVHDDDTCIGCQYCTWNCPYEVPTYHEE 142



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECI------DCGVCEPECPVDAIKPDT 59
           + CI C++  C   CP +   Y  E  +      C           C   CP  AI+ + 
Sbjct: 120 DTCIGCQY--CTWNCPYEVPTYHEERKIVTKCHMCHERLDVGQTPACVQACPSGAIEIEV 177

Query: 60  EPGLELWLK 68
              ++ WL+
Sbjct: 178 -VNIQKWLE 185


>gi|254450340|ref|ZP_05063777.1| formate dehydrogenase Fe-S subunit [Octadecabacter antarcticus 238]
 gi|198264746|gb|EDY89016.1| formate dehydrogenase Fe-S subunit [Octadecabacter antarcticus 238]
          Length = 197

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+  + + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYQTADGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|157375092|ref|YP_001473692.1| respiratory nitrate reductase beta subuni [Shewanella sediminis
           HAW-EB3]
 gi|157317466|gb|ABV36564.1| respiratory nitrate reductase beta subuni [Shewanella sediminis
           HAW-EB3]
          Length = 512

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|149915678|ref|ZP_01904204.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           AzwK-3b]
 gi|149810570|gb|EDM70413.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           AzwK-3b]
          Length = 197

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|110806401|ref|YP_689921.1| putative oxidoreductase Fe-S binding subunit [Shigella flexneri 5
           str. 8401]
 gi|110615949|gb|ABF04616.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
          Length = 659

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|20093899|ref|NP_613746.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886840|gb|AAM01676.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 379

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y+  + CI C+   C +VCPVD     E      I PD C+ CG+C   CP  A+     
Sbjct: 236 YIQPDMCIGCR--ICYDVCPVDAIRIEEITRMPVIMPDLCVRCGLCADACPTSAVDRVPT 293

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKM-------DGVKQKYEKYFSPN 107
              E  + + S  +  +  I T+ E L +A +          V++K  +     
Sbjct: 294 EEAEREV-LRSRISDAFLGILTR-EMLEAAEEFGSTTRTERDVEEKLSELLERK 345



 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL- 67
           C  C++  C+EVCP     E      I  D C  C  C   CP  ++  + E        
Sbjct: 108 CDRCENRPCIEVCPTGVMREIIEEHRIDLDACHGCLECVKVCPYGSVTVELEVPQLKRRS 167

Query: 68  --KINSEYATQWPNITT 82
             ++N E   +      
Sbjct: 168 NPRLNRELCVECNRCHE 184



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---------AIHPDECIDCGVCEPECPVDAI 55
             E C+ C +  CV  CP +     ++            I PD CI C +C   CPVDAI
Sbjct: 200 DPERCLGCYN--CVAYCPTEALKRPDHRPRPKCTDEVFYIQPDMCIGCRICYDVCPVDAI 257

Query: 56  KPDT 59
           + + 
Sbjct: 258 RIEE 261



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + C  C    C EVCP     E +  + +  D C+ C  C   CP D  +   
Sbjct: 26 PDECAGC--GLCAEVCPTGAI-EVDERVRLDEDRCVACSFCVQACPRDVFRFYE 76


>gi|157161943|ref|YP_001459261.1| hydrogenase-4 component A [Escherichia coli HS]
 gi|191167653|ref|ZP_03029463.1| hydrogenase-4 component A [Escherichia coli B7A]
 gi|193068427|ref|ZP_03049390.1| hydrogenase-4 component A [Escherichia coli E110019]
 gi|209919956|ref|YP_002294040.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218696110|ref|YP_002403777.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli 55989]
 gi|293446836|ref|ZP_06663258.1| hyfA [Escherichia coli B088]
 gi|312973284|ref|ZP_07787456.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|331669220|ref|ZP_08370068.1| hydrogenase-4 component A [Escherichia coli TA271]
 gi|157067623|gb|ABV06878.1| hydrogenase-4 component A [Escherichia coli HS]
 gi|190902333|gb|EDV62072.1| hydrogenase-4 component A [Escherichia coli B7A]
 gi|192958379|gb|EDV88819.1| hydrogenase-4 component A [Escherichia coli E110019]
 gi|209913215|dbj|BAG78289.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218352842|emb|CAU98637.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli 55989]
 gi|291323666|gb|EFE63094.1| hyfA [Escherichia coli B088]
 gi|310331879|gb|EFP99114.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|323944700|gb|EGB40767.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|331064414|gb|EGI36325.1| hydrogenase-4 component A [Escherichia coli TA271]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|323498655|ref|ZP_08103647.1| hypothetical protein VISI1226_02972 [Vibrio sinaloensis DSM 21326]
 gi|323316353|gb|EGA69372.1| hypothetical protein VISI1226_02972 [Vibrio sinaloensis DSM 21326]
          Length = 229

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP      + E  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQVRFFNPEDH 154


>gi|320101037|ref|YP_004176629.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           mucosus DSM 2162]
 gi|319753389|gb|ADV65147.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           mucosus DSM 2162]
          Length = 403

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAIKP 57
             V  + CI C    C +VC  D  +  +        I   +C  CG+C   CP  AI  
Sbjct: 343 PVVDEKKCIGC--GFCEQVCNYDAVHVEDAGGKRVARIDLTKCYGCGLCTSVCPTRAIHF 400



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDT 59
             +   +CI CG CE  C  DA+  + 
Sbjct: 343 PVVDEKKCIGCGFCEQVCNYDAVHVED 369


>gi|318058600|ref|ZP_07977323.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces sp.
           SA3_actG]
 gi|318080109|ref|ZP_07987441.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces sp.
           SA3_actF]
          Length = 315

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+     
Sbjct: 126 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIEQREGD 182


>gi|295106199|emb|CBL03742.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 206

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +C  C    C +VCP    ++      +++  D+C+ CG C   CP +A K D
Sbjct: 66  SCNHCDDPACTKVCPTGAMHKDAETGLVSVDADKCVGCGYCHMACPYNAPKVD 118


>gi|295095788|emb|CBK84878.1| respiratory nitrate reductase beta subunit [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|197283983|ref|YP_002149855.1| hypothetical protein PMI0070 [Proteus mirabilis HI4320]
 gi|227358148|ref|ZP_03842489.1| oxidoreductase, Fe-S subunit [Proteus mirabilis ATCC 29906]
 gi|194681470|emb|CAR40309.1| putative oxidoreductase, Fe-S subunit [Proteus mirabilis HI4320]
 gi|227161484|gb|EEI46521.1| oxidoreductase, Fe-S subunit [Proteus mirabilis ATCC 29906]
          Length = 209

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           T+ C  CK  +C+ VCPV      E F  + +    CI C  C   CP   
Sbjct: 121 TDTCRQCKTPECMNVCPVKAIRYQEEFGCIVVDTRRCIGCAACTTACPWMM 171


>gi|160893746|ref|ZP_02074530.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
 gi|156864731|gb|EDO58162.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
          Length = 661

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C   CPV            I   +CI CG C   C   A+  +
Sbjct: 607 IDPEACKGCSK--CARNCPVGAITGEIRKPFVIDTAKCIKCGACIDNCAFHAVYTE 660


>gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV + C+ C  T C +VCPV+C   + +    I    CI CG C  +C  DAI
Sbjct: 433 VVDQKCVGC--TLCAKVCPVNCISGKPKEVHVIDQAACIKCGACLDKCKFDAI 483


>gi|109105179|ref|XP_001104103.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Macaca mulatta]
 gi|62287022|sp|Q60HE3|NDUS8_MACFA RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|52782251|dbj|BAD51972.1| NADH dehydrogenase Fe-S protein 8 [Macaca fascicularis]
 gi|90076936|dbj|BAE88148.1| unnamed protein product [Macaca fascicularis]
          Length = 210

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 597

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ + C  C    C++VCP      E      I  D+CI C  C   CP  AI
Sbjct: 544 IIADKCKGC--GMCLKVCPTQAISGERRQPHKIDTDKCIKCNSCFDRCPFGAI 594



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CP     +      I  D+C  CG+C   CP  AI  +
Sbjct: 529 KKCPAGAC-KALVHYEIIADKCKGCGMCLKVCPTQAISGE 567


>gi|323967925|gb|EGB63337.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327252131|gb|EGE63803.1| hydrogenase-4 component A [Escherichia coli STEC_7v]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|291435505|ref|ZP_06574895.1| 4Fe-4S ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|291338400|gb|EFE65356.1| 4Fe-4S ferredoxin [Streptomyces ghanaensis ATCC 14672]
          Length = 266

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I    + 
Sbjct: 176 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDQRPDD 232


>gi|254506838|ref|ZP_05118977.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus 16]
 gi|219550123|gb|EED27109.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus 16]
          Length = 230

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP      + E  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQVRFFNPEDH 154


>gi|39996191|ref|NP_952142.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|39982956|gb|AAR34415.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|298505204|gb|ADI83927.1| iron-sulfur cluster-binding oxidoreductase [Geobacter
           sulfurreducens KN400]
          Length = 368

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V E  C  C    C++ C  D     E    I P  C  C  C   CP  AI        
Sbjct: 190 VAEKYCTGC--GLCLKACAHDAIAIIEGKAKIDPKACAGCSRCITVCPTKAITIQWNEAA 247

Query: 64  ELWLKINSEYAT 75
           +L +K  +E+A 
Sbjct: 248 DLVMKKMAEFAK 259


>gi|24113797|ref|NP_708307.1| putative oxidoreductase Fe-S binding subunit [Shigella flexneri 2a
           str. 301]
 gi|30063848|ref|NP_838019.1| putative oxidoreductase Fe-S binding subunit [Shigella flexneri 2a
           str. 2457T]
 gi|24052881|gb|AAN44014.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|30042103|gb|AAP17829.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|332756504|gb|EGJ86855.1| protein aegA [Shigella flexneri 2747-71]
 gi|333016371|gb|EGK35702.1| protein aegA [Shigella flexneri K-304]
          Length = 659

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|51894277|ref|YP_076968.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
 gi|51857966|dbj|BAD42124.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
          Length = 149

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + + E CI C  T CV VCP +    E +    I P  CIDC  C   CPV AI  +
Sbjct: 1  MPHYIDEKCIGC--TACVSVCPTEAISGERKQLHYIDPKLCIDCDACVRSCPVLAIADE 57



 Score = 34.6 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 15/66 (22%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCF-------------YEGENFLAIHPDECIDCGVCEPE 49
          Y+  + CI C    CV  CPV                        I P  C  C  C   
Sbjct: 33 YIDPKLCIDCD--ACVRSCPVLAIADEFGVYKPRIPKRSDWPKPVIDPVSCSGCDFCVDI 90

Query: 50 CPVDAI 55
          CP D +
Sbjct: 91 CPFDCL 96


>gi|323700506|ref|ZP_08112418.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323460438|gb|EGB16303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 185

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C  C++  C+ VCPV+ + + E+ + +H  E CI CG C   CP  A
Sbjct: 58  SCNHCENPACLNVCPVEAYTKREDGVVVHHQEKCIGCGNCIRSCPYGA 105


>gi|255322093|ref|ZP_05363240.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
 gi|255300791|gb|EET80061.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
          Length = 213

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C+   C  VCPVDCFY   + +     D CI CG C   CP  A
Sbjct: 61  ACMHCEDAPCSLVCPVDCFYIRADGVVLHDKDICIGCGYCLYACPFGA 108


>gi|271965199|ref|YP_003339395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptosporangium roseum DSM 43021]
 gi|270508374|gb|ACZ86652.1| 4Fe-4S ferredoxin iron-sulfur binding domain- containing protein
           [Streptosporangium roseum DSM 43021]
          Length = 288

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I      
Sbjct: 87  SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQADVCNGCGYCVPACPYGVIDRRERD 143


>gi|119187897|ref|XP_001244555.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Coccidioides immitis RS]
          Length = 232

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 130 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 187

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 188 VESP----------NAEYATETREELLYNKEKLLANGDKWESE 220


>gi|300951821|ref|ZP_07165633.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301644471|ref|ZP_07244468.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|331643098|ref|ZP_08344233.1| hydrogenase-4 component A [Escherichia coli H736]
 gi|300448952|gb|EFK12572.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301077216|gb|EFK92022.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|331039896|gb|EGI12116.1| hydrogenase-4 component A [Escherichia coli H736]
          Length = 218

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|82777863|ref|YP_404212.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
 gi|81242011|gb|ABB62721.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
          Length = 218

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|24113810|ref|NP_708320.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30063859|ref|NP_838030.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110806414|ref|YP_689934.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|24052897|gb|AAN44027.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30042114|gb|AAP17840.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110615962|gb|ABF04629.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|313650937|gb|EFS15337.1| hydrogenase-4 component A [Shigella flexneri 2a str. 2457T]
 gi|332755122|gb|EGJ85487.1| hydrogenase-4 component A [Shigella flexneri 4343-70]
 gi|332755521|gb|EGJ85885.1| hydrogenase-4 component A [Shigella flexneri K-671]
 gi|332756570|gb|EGJ86921.1| hydrogenase-4 component A [Shigella flexneri 2747-71]
 gi|332766287|gb|EGJ96497.1| 4Fe-4S binding domain protein [Shigella flexneri 2930-71]
 gi|333001869|gb|EGK21435.1| hydrogenase-4 component A [Shigella flexneri K-218]
 gi|333016253|gb|EGK35584.1| hydrogenase-4 component A [Shigella flexneri K-304]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|187730471|ref|YP_001881273.1| hydrogenase-4 component A [Shigella boydii CDC 3083-94]
 gi|187427463|gb|ACD06737.1| hydrogenase-4 component A [Shigella boydii CDC 3083-94]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|333016073|gb|EGK35405.1| protein aegA [Shigella flexneri K-227]
          Length = 659

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|260868162|ref|YP_003234564.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O111:H-
           str. 11128]
 gi|257764518|dbj|BAI36013.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O111:H-
           str. 11128]
          Length = 239

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQQNKYY 213


>gi|258576549|ref|XP_002542456.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Uncinocarpus reesii
           1704]
 gi|237902722|gb|EEP77123.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Uncinocarpus reesii
           1704]
          Length = 232

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 130 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 187

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 188 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 220


>gi|168229986|ref|ZP_02655044.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471589|ref|ZP_03077573.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457953|gb|EDX46792.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335235|gb|EDZ21999.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|157821497|ref|NP_001099792.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Rattus norvegicus]
 gi|149061895|gb|EDM12318.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|149061896|gb|EDM12319.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|149061897|gb|EDM12320.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|165971299|gb|AAI58792.1| Ndufs8 protein [Rattus norvegicus]
          Length = 212

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 168 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 200


>gi|323977341|gb|EGB72427.1| 4Fe-4S binding domain-containing protein [Escherichia coli
          TW10509]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|291544150|emb|CBL17259.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus sp. 18P13]
          Length = 475

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C +VC           +  I   +C +CG C   CP  AI     P
Sbjct: 91  YEVTNACRGCLAHRCEDVCRFGAITFDYQHVAHIDKSKCKNCGACAKVCPYTAINCRRRP 150



 Score = 41.5 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           I C+   C   C +   +  EN  A I  D+CI CG C  +CP  AI
Sbjct: 144 INCRRRPCENACKIKALHMNENKAAAIDNDKCISCGACVYQCPFGAI 190


>gi|291441974|ref|ZP_06581364.1| formate dehydrogenase beta subunit [Streptomyces ghanaensis ATCC
           14672]
 gi|291344869|gb|EFE71825.1| formate dehydrogenase beta subunit [Streptomyces ghanaensis ATCC
           14672]
          Length = 333

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + + PD C  CG C   CP   I    + 
Sbjct: 152 SDVCKHCTHAGCLDVCPTGALFRTEFGSVVVQPDICNGCGYCVSGCPYGVIDRRPDD 208


>gi|315231077|ref|YP_004071513.1| indolepyruvate oxidoreductase subunit [Thermococcus barophilus MP]
 gi|315184105|gb|ADT84290.1| indolepyruvate oxidoreductase subunit [Thermococcus barophilus MP]
          Length = 645

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C  CK       CP   +   +    ++P  C  CG C   CP  A +   E
Sbjct: 587 VNEDKCTGCKICINAYGCPAIYWDAEKKKAQVNPLMCWGCGGCAQVCPFGAFEVMKE 643


>gi|117619673|ref|YP_857013.1| hydrogenase-4 component A [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
 gi|117561080|gb|ABK38028.1| hydrogenase-4 component A [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 221

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C    C +VCPV+   +  + + ++   CI C +C   CP  AI+
Sbjct: 51 CRHCDDAPCSKVCPVEAIRQTGDCVQLNESLCIGCNLCAVACPFGAIQ 98


>gi|120609361|ref|YP_969039.1| respiratory nitrate reductase subunit beta [Acidovorax citrulli
           AAC00-1]
 gi|120587825|gb|ABM31265.1| respiratory nitrate reductase beta subunit [Acidovorax citrulli
           AAC00-1]
          Length = 507

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|90418456|ref|ZP_01226368.1| formate dehydrogenase, iron-sulfur subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338128|gb|EAS51779.1| formate dehydrogenase, iron-sulfur subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 198

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|193064781|ref|ZP_03045859.1| hydrogenase-4 component A [Escherichia coli E22]
 gi|194427266|ref|ZP_03059816.1| hydrogenase-4 component A [Escherichia coli B171]
 gi|218555007|ref|YP_002387920.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI1]
 gi|260845115|ref|YP_003222893.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O103:H2 str.
          12009]
 gi|260856576|ref|YP_003230467.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O26:H11 str.
          11368]
 gi|260869171|ref|YP_003235573.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O111:H- str.
          11128]
 gi|307312525|ref|ZP_07592158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|192927664|gb|EDV82280.1| hydrogenase-4 component A [Escherichia coli E22]
 gi|194414587|gb|EDX30859.1| hydrogenase-4 component A [Escherichia coli B171]
 gi|218361775|emb|CAQ99372.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI1]
 gi|257755225|dbj|BAI26727.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O26:H11 str.
          11368]
 gi|257760262|dbj|BAI31759.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O103:H2 str.
          12009]
 gi|257765527|dbj|BAI37022.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O111:H- str.
          11128]
 gi|306907448|gb|EFN37952.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|315061800|gb|ADT76127.1| hydrogenase 4, membrane subunit [Escherichia coli W]
 gi|323156083|gb|EFZ42242.1| hydrogenase-4 component A [Escherichia coli EPECa14]
 gi|323159332|gb|EFZ45317.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323177399|gb|EFZ62987.1| hydrogenase-4 component A [Escherichia coli 1180]
 gi|323377619|gb|ADX49887.1| hydrogenase 4 Fe-S subunit [Escherichia coli KO11]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|333001599|gb|EGK21167.1| protein aegA [Shigella flexneri VA-6]
          Length = 659

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
 gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
          Length = 597

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           YVV  E C  C    C  +CPV      +     I P++C  CG C   C  DA+
Sbjct: 542 YVVMPELCRGC--GLCARMCPVGAITGAKKEPYVIDPEKCTKCGTCMDVCKFDAV 594


>gi|320180465|gb|EFW55396.1| Hydrogenase-4 component A [Shigella boydii ATCC 9905]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|320176273|gb|EFW51334.1| Hydrogenase-4 component A [Shigella dysenteriae CDC 74-1112]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|281601872|gb|ADA74856.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2002017]
          Length = 654

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 51  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 103


>gi|256018313|ref|ZP_05432178.1| nitrate reductase 2 (NRZ), beta subunit [Shigella sp. D9]
 gi|332279361|ref|ZP_08391774.1| nitrate reductase 2 (NRZ) beta subunit [Shigella sp. D9]
 gi|332101713|gb|EGJ05059.1| nitrate reductase 2 (NRZ) beta subunit [Shigella sp. D9]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|218705980|ref|YP_002413499.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli UMN026]
 gi|218433077|emb|CAR13972.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli UMN026]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|168462986|ref|ZP_02696917.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633967|gb|EDX52319.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|189423224|ref|YP_001950401.1| hydrogenase 2 protein HybA [Geobacter lovleyi SZ]
 gi|189419483|gb|ACD93881.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 313

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCPV    + +    +  ++  CI C  C+  C  +  K   E
Sbjct: 114 SCMHCQKPSCVSVCPVSAMTKDKITGIVDYNKNTCIGCRYCQVACAFNIPKFQWE 168


>gi|48926965|gb|AAT47524.1| NarH [Halomonas maura]
          Length = 535

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|16760301|ref|NP_455918.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141934|ref|NP_805276.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213417562|ref|ZP_03350704.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648504|ref|ZP_03378557.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289826357|ref|ZP_06545469.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25285395|pir||AI0671 respiratory nitrate reductase 2 beta chain [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502596|emb|CAD01746.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137563|gb|AAO69125.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|194432127|ref|ZP_03064416.1| hydrogenase-4 component A [Shigella dysenteriae 1012]
 gi|194419656|gb|EDX35736.1| hydrogenase-4 component A [Shigella dysenteriae 1012]
 gi|332087922|gb|EGI93047.1| hydrogenase-4 component A [Shigella boydii 5216-82]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|222823395|ref|YP_002574969.1| formate dehydrogenase, beta (iron-sulfur) subunit [Campylobacter
           lari RM2100]
 gi|222538617|gb|ACM63718.1| formate dehydrogenase, beta (iron-sulfur) subunit [Campylobacter
           lari RM2100]
          Length = 189

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C  C    C +VCPV CFY   + +       CI CG C   CP  A
Sbjct: 55  ACQHCTDAPCEQVCPVKCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 102


>gi|333002249|gb|EGK21813.1| protein aegA [Shigella flexneri K-272]
          Length = 654

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 51  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 103


>gi|331673000|ref|ZP_08373777.1| nitrate reductase, beta subunit [Escherichia coli TA280]
 gi|331069779|gb|EGI41157.1| nitrate reductase, beta subunit [Escherichia coli TA280]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|297616864|ref|YP_003702023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297144701|gb|ADI01458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 58

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M Y +T+ CI C    CV+ CPV    EG++   I P+ C +CG C   CPV+A +P  E
Sbjct: 1  MAYYITDECISC--GVCVDECPVGAISEGDDKYVIDPELCTECGACAEICPVEAPQPAEE 58


>gi|213163639|ref|ZP_03349349.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|168241119|ref|ZP_02666051.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450643|ref|YP_002045618.1| nitrate reductase 2 subunit beta [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408947|gb|ACF69166.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339470|gb|EDZ26234.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|204927905|ref|ZP_03219106.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323247|gb|EDZ08443.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|197251245|ref|YP_002146458.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214948|gb|ACH52345.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|146414379|ref|XP_001483160.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 233

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 131 EERCIACKL--CEAICPAQAITIEAEERADGLRRTYKYDIDMTKCIYCGYCQESCPVDAI 188

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N EYAT+     +  K++ L +  K +  
Sbjct: 189 VESP----------NVEYATETREELLYNKEKLLENGDKWEQE 221


>gi|148974078|ref|ZP_01811611.1| tetrathionate reductase, subunit B [Vibrionales bacterium SWAT-3]
 gi|145965775|gb|EDK31023.1| tetrathionate reductase, subunit B [Vibrionales bacterium SWAT-3]
          Length = 263

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDT 59
           C  C +  C++VCPV   ++ E+ +  +  + C+ C  C   CP DA  I  DT
Sbjct: 112 CNHCDNAPCIKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDARFINHDT 165


>gi|124485786|ref|YP_001030402.1| hypothetical protein Mlab_0965 [Methanocorpusculum labreanum Z]
 gi|124363327|gb|ABN07135.1| protein of unknown function DUF362 [Methanocorpusculum labreanum Z]
          Length = 382

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C    C  +CPV       +        CI C  C   C   AI+ 
Sbjct: 315 PVINNKKCIGC--GQCARICPVKAVEIINDKALFDLTNCIRCYCCHEMCQYHAIEM 368


>gi|150019924|ref|YP_001305278.1| cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
 gi|149792445|gb|ABR29893.1| Cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
          Length = 282

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  + CI C   +C   C         N   +  + C  CG C   CPV+AI
Sbjct: 62  PVVDNDKCIKC--GECSRACQFGAISVFPNSTVVFKNLCHGCGACTMVCPVNAI 113


>gi|116747465|ref|YP_844152.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116696529|gb|ABK15717.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1116

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAIKPD 58
            V    C  C    C++ CP       +N        +    C  CG C   CP DA   D
Sbjct: 1043 VDESRCRGC--GRCLQACPYQAISFRKNGLGGSHAVVDEALCKGCGNCISVCPSDA--AD 1098

Query: 59   TEPGLELWLKINSE 72
            +    +L+L+   E
Sbjct: 1099 SPYRDQLFLEQMIE 1112



 Score = 34.2 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC 25
           T+V  E C LC    C EVCP   
Sbjct: 104 TFVDPERCTLC--GRCAEVCPAAA 125


>gi|158321169|ref|YP_001513676.1| hypothetical protein Clos_2144 [Alkaliphilus oremlandii OhILAs]
 gi|158141368|gb|ABW19680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 220

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            E C  C++  C   CPVD     E      +   +CI CGVC+  CP      D E  
Sbjct: 122 PETCKQCENPKCASACPVDAISLNERWGAWMVDESKCIGCGVCKRACPWGMPTVDPEDK 180


>gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV + C+ C  T C +VCPV+C   + +    I    CI CG C  +C  DAI
Sbjct: 433 VVDQKCVGC--TLCAKVCPVNCISGKPKEVHVIDQAACIKCGACLDKCKFDAI 483


>gi|323978374|gb|EGB73460.1| nitrate reductase [Escherichia coli TW10509]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|300918874|ref|ZP_07135438.1| nitrate reductase, beta subunit [Escherichia coli MS 115-1]
 gi|300413986|gb|EFJ97296.1| nitrate reductase, beta subunit [Escherichia coli MS 115-1]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|241764576|ref|ZP_04762593.1| nitrate reductase, beta subunit [Acidovorax delafieldii 2AN]
 gi|241365979|gb|EER60600.1| nitrate reductase, beta subunit [Acidovorax delafieldii 2AN]
          Length = 507

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|168819354|ref|ZP_02831354.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343699|gb|EDZ30463.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085935|emb|CBY95709.1| respiratory nitrate reductase, beta subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322614829|gb|EFY11754.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619270|gb|EFY16150.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623082|gb|EFY19924.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628372|gb|EFY25160.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634778|gb|EFY31509.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322638656|gb|EFY35351.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640954|gb|EFY37601.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645462|gb|EFY41990.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651653|gb|EFY48025.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654445|gb|EFY50767.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661287|gb|EFY57513.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665061|gb|EFY61249.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667806|gb|EFY63966.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671783|gb|EFY67904.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677172|gb|EFY73236.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680166|gb|EFY76205.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685406|gb|EFY81402.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194708|gb|EFZ79897.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199921|gb|EFZ85009.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202480|gb|EFZ87521.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205782|gb|EFZ90745.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209801|gb|EFZ94723.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218024|gb|EGA02738.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219310|gb|EGA03800.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323231971|gb|EGA16078.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234498|gb|EGA18585.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237949|gb|EGA22008.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243449|gb|EGA27468.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249726|gb|EGA33631.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253756|gb|EGA37583.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323254829|gb|EGA38625.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260762|gb|EGA44366.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266570|gb|EGA50057.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271295|gb|EGA54721.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|157374544|ref|YP_001473144.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316918|gb|ABV36016.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 205

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C H  CV+ CP    ++   +  + I    C+ C  C   CP DA + D+E
Sbjct: 69  SCNHCSHPVCVKACPTGACHKRKSDGLVHIEASLCVGCQSCSRACPYDAPQFDSE 123


>gi|126734222|ref|ZP_01749969.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126717088|gb|EBA13952.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 197

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|119873469|ref|YP_931476.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum islandicum DSM 4184]
 gi|119674877|gb|ABL89133.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum islandicum DSM 4184]
          Length = 282

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C++  CV  CP            + +  D CI C  C   CP +A+  D
Sbjct: 46 CNHCENAPCVNSCPTGALRHNPETGIVQLDKDLCIGCRACTRACPYNAVYID 97


>gi|62180147|ref|YP_216564.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|198245547|ref|YP_002215569.1| nitrate reductase 2 subunit beta [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389463|ref|ZP_03216074.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207856927|ref|YP_002243578.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|62127780|gb|AAX65483.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|197940063|gb|ACH77396.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199601908|gb|EDZ00454.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|206708730|emb|CAR33056.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|322714620|gb|EFZ06191.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|16764922|ref|NP_460537.1| nitrate reductase 2 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161613976|ref|YP_001587941.1| hypothetical protein SPAB_01714 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167992935|ref|ZP_02574030.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168260238|ref|ZP_02682211.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|16420101|gb|AAL20496.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161363340|gb|ABX67108.1| hypothetical protein SPAB_01714 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205328965|gb|EDZ15729.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205351212|gb|EDZ37843.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|261246771|emb|CBG24585.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993492|gb|ACY88377.1| nitrate reductase 2 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158106|emb|CBW17603.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|321224203|gb|EFX49266.1| Respiratory nitrate reductase beta chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323129848|gb|ADX17278.1| nitrate reductase 2 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988465|gb|AEF07448.1| nitrate reductase 2 beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|113972005|ref|YP_735798.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|114045777|ref|YP_736327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113886689|gb|ABI40741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
 gi|113887219|gb|ABI41270.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 219

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y  +  C  C    CV+ CP    ++ ++   + +    CI CG C   CP DA + DT
Sbjct: 76  AYYTSIGCNHCSEPVCVKACPTGAMHKRKDNGLVLVESSICIGCGSCARACPYDAPQLDT 135


>gi|324111085|gb|EGC05071.1| nitrate reductase [Escherichia fergusonii B253]
 gi|325496772|gb|EGC94631.1| nitrate reductase, beta subunit [Escherichia fergusonii ECD227]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|323936359|gb|EGB32649.1| glutamate synthase [Escherichia coli E1520]
          Length = 659

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|331662942|ref|ZP_08363852.1| nitrate reductase, beta subunit [Escherichia coli TA143]
 gi|331058741|gb|EGI30718.1| nitrate reductase, beta subunit [Escherichia coli TA143]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|331658614|ref|ZP_08359558.1| protein AegA [Escherichia coli TA206]
 gi|331054279|gb|EGI26306.1| protein AegA [Escherichia coli TA206]
          Length = 659

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|301064617|ref|ZP_07205013.1| electron transfer flavoprotein FAD-binding domain protein [delta
          proteobacterium NaphS2]
 gi|300441365|gb|EFK05734.1| electron transfer flavoprotein FAD-binding domain protein [delta
          proteobacterium NaphS2]
          Length = 393

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 1  MT-YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MT ++  E C  CK   CV+ CP +     +    I    C  CG C   C   AI  D 
Sbjct: 1  MTIWIDAELCNGCK--RCVKACPYEGVEMRDGKAHILE-RCTSCGACIESCKQKAISSDA 57

Query: 60 EPGL 63
           P  
Sbjct: 58 APRE 61


>gi|194445816|ref|YP_002040825.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404479|gb|ACF64701.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|167549954|ref|ZP_02343712.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325122|gb|EDZ12961.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|74312993|ref|YP_311412.1| putative oxidoreductase Fe-S binding subunit [Shigella sonnei
           Ss046]
 gi|73856470|gb|AAZ89177.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
          Length = 659

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|56413475|ref|YP_150550.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362399|ref|YP_002142036.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56127732|gb|AAV77238.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093876|emb|CAR59362.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|15832637|ref|NP_311410.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. Sakai]
 gi|168748420|ref|ZP_02773442.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756293|ref|ZP_02781300.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761131|ref|ZP_02786138.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768613|ref|ZP_02793620.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773565|ref|ZP_02798572.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778487|ref|ZP_02803494.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787867|ref|ZP_02812874.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC869]
 gi|168798892|ref|ZP_02823899.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC508]
 gi|195936663|ref|ZP_03082045.1| putative anaerobic dimethyl sulfoxide reductase chain B
           [Escherichia coli O157:H7 str. EC4024]
 gi|208806169|ref|ZP_03248506.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813124|ref|ZP_03254453.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821767|ref|ZP_03262087.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397819|ref|YP_002271991.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327591|ref|ZP_03443674.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794467|ref|YP_003079304.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223047|ref|ZP_05937328.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259402|ref|ZP_05951935.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283742|ref|YP_003500560.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415785|ref|ZP_06658428.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|331653949|ref|ZP_08354950.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|13362853|dbj|BAB36806.1| putative anaerobic dimethyl sulfoxide reductase chain B
           [Escherichia coli O157:H7 str. Sakai]
 gi|187770599|gb|EDU34443.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017042|gb|EDU55164.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003152|gb|EDU72138.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356621|gb|EDU75040.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362214|gb|EDU80633.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368397|gb|EDU86813.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372381|gb|EDU90797.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC869]
 gi|189378639|gb|EDU97055.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC508]
 gi|208725970|gb|EDZ75571.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734401|gb|EDZ83088.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741890|gb|EDZ89572.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159219|gb|ACI36652.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217319958|gb|EEC28383.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593867|gb|ACT73228.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. TW14359]
 gi|290763615|gb|ADD57576.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433433|gb|EFF06412.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|320188854|gb|EFW63513.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320646308|gb|EFX15235.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H- str.
           493-89]
 gi|320651813|gb|EFX20193.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H- str.
           H 2687]
 gi|320657199|gb|EFX25008.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662805|gb|EFX30137.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667609|gb|EFX34524.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340319|gb|EGD64123.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|326345003|gb|EGD68747.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
 gi|331048798|gb|EGI20874.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
          Length = 209

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    ++  G+  + ++ D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSVSCNHCADPICTKNCPTMAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMNE 130

Query: 60  EPGLE 64
           + G  
Sbjct: 131 QTGQM 135


>gi|194436381|ref|ZP_03068482.1| nitrate reductase 2, beta subunit [Escherichia coli 101-1]
 gi|253773560|ref|YP_003036391.1| nitrate reductase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161525|ref|YP_003044633.1| nitrate reductase 2 subunit beta [Escherichia coli B str. REL606]
 gi|300929545|ref|ZP_07145010.1| nitrate reductase, beta subunit [Escherichia coli MS 187-1]
 gi|194424413|gb|EDX40399.1| nitrate reductase 2, beta subunit [Escherichia coli 101-1]
 gi|242377220|emb|CAQ31954.1| nitrate reductase Z, beta subunit, subunit of nitrate reductase Z
           [Escherichia coli BL21(DE3)]
 gi|253324604|gb|ACT29206.1| nitrate reductase, beta subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973426|gb|ACT39097.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli B str.
           REL606]
 gi|253977637|gb|ACT43307.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli
           BL21(DE3)]
 gi|300462497|gb|EFK25990.1| nitrate reductase, beta subunit [Escherichia coli MS 187-1]
 gi|323973692|gb|EGB68868.1| nitrate reductase [Escherichia coli TA007]
 gi|332343134|gb|AEE56468.1| nitrate reductase, beta subunit NarH [Escherichia coli UMNK88]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|191172939|ref|ZP_03034474.1| protein aegA [Escherichia coli F11]
 gi|190906803|gb|EDV66407.1| protein aegA [Escherichia coli F11]
          Length = 659

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|191165116|ref|ZP_03026960.1| nitrate reductase 2, beta subunit [Escherichia coli B7A]
 gi|190904888|gb|EDV64593.1| nitrate reductase 2, beta subunit [Escherichia coli B7A]
 gi|323186022|gb|EFZ71379.1| nitrate reductase, beta subunit [Escherichia coli 1357]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|327254113|gb|EGE65742.1| nitrate reductase, beta subunit [Escherichia coli STEC_7v]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|331652826|ref|ZP_08353831.1| nitrate reductase, beta subunit [Escherichia coli M718]
 gi|331048924|gb|EGI20996.1| nitrate reductase, beta subunit [Escherichia coli M718]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|284921353|emb|CBG34421.1| respiratory nitrate reductase 2 beta chain [Escherichia coli 042]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|291612995|ref|YP_003523152.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583107|gb|ADE10765.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
          Length = 431

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C+      C+  CP       +     I+P  CI  GVC P CP +AI
Sbjct: 58  CMG--AGSCITACPEGAIGMIKGKAVLINPTHCIGHGVCAPACPHNAI 103


>gi|215486696|ref|YP_002329127.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969224|ref|ZP_07783429.1| nitrate reductase, beta subunit [Escherichia coli 2362-75]
 gi|215264768|emb|CAS09152.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286111|gb|EFR14026.1| nitrate reductase, beta subunit [Escherichia coli 2362-75]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|168704240|ref|ZP_02736517.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 1156

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C+   C +VCPV+        L +   + CI    C   CP    + +     +  
Sbjct: 922 ACVHCEAAPCEQVCPVNAAVHSPEGLNLQVYNRCIGTRYCSNACPYKVRRFNWFDFNKRR 981

Query: 67  LK 68
           L 
Sbjct: 982 LD 983


>gi|157160943|ref|YP_001458261.1| nitrate reductase, beta subunit [Escherichia coli HS]
 gi|157066623|gb|ABV05878.1| nitrate reductase, beta subunit [Escherichia coli HS]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|157159065|ref|YP_001462739.1| nitrate reductase, beta subunit [Escherichia coli E24377A]
 gi|193064226|ref|ZP_03045309.1| nitrate reductase 2, beta subunit [Escherichia coli E22]
 gi|193066943|ref|ZP_03047912.1| nitrate reductase 2, beta subunit [Escherichia coli E110019]
 gi|194426018|ref|ZP_03058574.1| nitrate reductase 2, beta subunit [Escherichia coli B171]
 gi|260843775|ref|YP_003221553.1| nitrate reductase 2, beta subunit [Escherichia coli O103:H2 str.
           12009]
 gi|300925904|ref|ZP_07141739.1| nitrate reductase, beta subunit [Escherichia coli MS 182-1]
 gi|301325097|ref|ZP_07218635.1| nitrate reductase, beta subunit [Escherichia coli MS 78-1]
 gi|157081095|gb|ABV20803.1| nitrate reductase, beta subunit [Escherichia coli E24377A]
 gi|192929074|gb|EDV82685.1| nitrate reductase 2, beta subunit [Escherichia coli E22]
 gi|192959533|gb|EDV89967.1| nitrate reductase 2, beta subunit [Escherichia coli E110019]
 gi|194416073|gb|EDX32339.1| nitrate reductase 2, beta subunit [Escherichia coli B171]
 gi|257758922|dbj|BAI30419.1| nitrate reductase 2, beta subunit [Escherichia coli O103:H2 str.
           12009]
 gi|300418008|gb|EFK01319.1| nitrate reductase, beta subunit [Escherichia coli MS 182-1]
 gi|300848029|gb|EFK75789.1| nitrate reductase, beta subunit [Escherichia coli MS 78-1]
 gi|323160617|gb|EFZ46558.1| nitrate reductase, beta subunit [Escherichia coli E128010]
 gi|323170119|gb|EFZ55774.1| nitrate reductase, beta subunit [Escherichia coli LT-68]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|330998930|ref|ZP_08322657.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329576144|gb|EGG57663.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 253

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  CV+VCP    +     + +H DE CI C +C+  CP  + +   E     
Sbjct: 62  CNHCENPQCVKVCPTGAMFISPEGVVLHNDEVCIGCRLCQKACPYSSAELGPESLDGK 119


>gi|325184975|emb|CCA19467.1| NADH dehydrogenase putative [Albugo laibachii Nc14]
          Length = 202

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 100 EERCIACKL--CEAICPAQAITIEAEARADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 157

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    +  K + L +  K +
Sbjct: 158 VEGP----------NFEFATETHEELLYDKAKLLANGDKWE 188


>gi|323184464|gb|EFZ69839.1| hydrogenase-4 component A [Escherichia coli 1357]
          Length = 205

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|323169096|gb|EFZ54773.1| protein aegA [Shigella sonnei 53G]
          Length = 654

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 51  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 103


>gi|307312542|ref|ZP_07592175.1| glutamate synthase, small subunit [Escherichia coli W]
 gi|306907465|gb|EFN37969.1| glutamate synthase, small subunit [Escherichia coli W]
 gi|315061783|gb|ADT76110.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli W]
 gi|323377636|gb|ADX49904.1| glutamate synthase, small subunit [Escherichia coli KO11]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|300921411|ref|ZP_07137771.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|331653906|ref|ZP_08354907.1| hydrogenase-4 component A [Escherichia coli M718]
 gi|300411645|gb|EFJ94955.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|331048755|gb|EGI20831.1| hydrogenase-4 component A [Escherichia coli M718]
          Length = 218

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|300817759|ref|ZP_07097974.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300820857|ref|ZP_07101007.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300903489|ref|ZP_07121414.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|301302831|ref|ZP_07208959.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|309794478|ref|ZP_07688901.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|331678465|ref|ZP_08379140.1| hydrogenase-4 component A [Escherichia coli H591]
 gi|300404521|gb|EFJ88059.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300526610|gb|EFK47679.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300529747|gb|EFK50809.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300841766|gb|EFK69526.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|308121934|gb|EFO59196.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|315256495|gb|EFU36463.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|324020155|gb|EGB89374.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|331074925|gb|EGI46245.1| hydrogenase-4 component A [Escherichia coli H591]
          Length = 218

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|291520273|emb|CBK75494.1| 4Fe-4S binding domain [Butyrivibrio fibrisolvens 16/4]
          Length = 56

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++C+ C    C   CPV    +G++   I    C++CG C   CP  AI
Sbjct: 1  MAYVISDSCVSC--GTCEPECPVGAISQGDSQFQIDETACVECGTCAGVCPTGAI 53


>gi|227825030|ref|ZP_03989862.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905529|gb|EEH91447.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 375

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V    C  CK   C + C  D     +    I    C  CG C   C  DAI+     
Sbjct: 191 PVVDESLCRDCK--RCAKECGSDAITYEKGKAHIDKTRCTGCGRCIGACSFDAIETVEWD 248

Query: 62  GLELWLKINSEYA 74
             EL  +  +EYA
Sbjct: 249 ANELLDRKMAEYA 261


>gi|218696094|ref|YP_002403761.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           55989]
 gi|218352826|emb|CAU98614.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli 55989]
 gi|324118191|gb|EGC12088.1| glutamate synthase [Escherichia coli E1167]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|110642640|ref|YP_670370.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli 536]
 gi|215487769|ref|YP_002330200.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218690594|ref|YP_002398806.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           ED1a]
 gi|110344232|gb|ABG70469.1| AegA protein [Escherichia coli 536]
 gi|215265841|emb|CAS10250.1| fused predicted oxidoreductase: FeS binding subunit
           /NAD/FAD-binding subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218428158|emb|CAR09073.2| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli ED1a]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|60683111|ref|YP_213255.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343]
 gi|60494545|emb|CAH09344.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343]
          Length = 489

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C   CP D     +N    I  D CI CG C   CP  AI     P
Sbjct: 114 YEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIPVP 173

Query: 62  GLEL 65
             E 
Sbjct: 174 CEEA 177



 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C E CPV    + EN +  I   +CI CG C  
Sbjct: 147 IDHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|328952049|ref|YP_004369383.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452373|gb|AEB08202.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1014

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V  E C  C    CV  CP D  +  +     I P +C  CGVC  ECP  AI+      
Sbjct: 942  VDGEICAACL--ICVRACPFDVPFINDKGYSEIDPAKCHGCGVCAAECPAKAIQLMQFED 999

Query: 63   LELWLKI 69
             ++  K+
Sbjct: 1000 DQIAAKL 1006



 Score = 36.9 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 14/77 (18%)

Query: 3   YVVTENCILC-----KHTDCVEVCP---------VDCFYEGENFLAIHPDECIDCGVCEP 48
           Y+ TE C  C     K  +CV   P         +       +  +I  ++C +      
Sbjct: 105 YIDTEKCTACGECYRKFPECVRFTPGLDHRAPTCMRYPKTTPDAFSIDMEKCTNKDELVK 164

Query: 49  ECPVDAIKPDTEPGLEL 65
            CP  AI  D  P  + 
Sbjct: 165 VCPAGAIILDDGPKTQE 181


>gi|325299905|ref|YP_004259822.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319458|gb|ADY37349.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 297

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPGLE 64
           T  CI C    CV+VCP +      N   I P +C  C  CE ECP  AI   +  P   
Sbjct: 218 TAACIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCETECPQGAIIAVNFPPRKA 275

Query: 65  LWLKINSEYATQWPNITTKKE 85
              +  +  A   PN     +
Sbjct: 276 KPAEPEAPKAELNPNEVEPIK 296



 Score = 34.6 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C               +  ++C  CG C   CP + I
Sbjct: 142 CLGC--GDCVSACQFGAIRMNPETGLPEVDEEKCTACGACAKACPRNII 188


>gi|323188233|gb|EFZ73526.1| protein aegA [Escherichia coli RN587/1]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|320657144|gb|EFX24953.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|312891192|ref|ZP_07750714.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Mucilaginibacter paludis DSM 18603]
 gi|311296359|gb|EFQ73506.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Mucilaginibacter paludis DSM 18603]
          Length = 1031

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  E    +  + CI    C   CP    + +         
Sbjct: 856 CQHCDHAPCETVCPVLATVHSSEGLNHMAYNRCIGTRYCANNCPYKVRRFNWFNYWNDSR 915

Query: 68  KIN 70
             N
Sbjct: 916 FDN 918


>gi|306814455|ref|ZP_07448617.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           NC101]
 gi|305851849|gb|EFM52301.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           NC101]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|295107545|emb|CBL05088.1| 4Fe-4S binding domain. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 115

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
          V + C  C++  CV+VCP    Y  ++    I  ++CI C  C   CP  A
Sbjct: 49 VPKQCNHCENPQCVKVCPTGASYVADDGTVQIDAEKCIGCKYCLAACPYQA 99


>gi|293410861|ref|ZP_06654437.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471329|gb|EFF13813.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|281179530|dbj|BAI55860.1| putative oxidoreductase [Escherichia coli SE15]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|260845099|ref|YP_003222877.1| fused putative oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O103:H2 str. 12009]
 gi|257760246|dbj|BAI31743.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O103:H2 str. 12009]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|260856560|ref|YP_003230451.1| fused putative oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O26:H11 str. 11368]
 gi|257755209|dbj|BAI26711.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O26:H11 str. 11368]
 gi|323156067|gb|EFZ42226.1| protein aegA [Escherichia coli EPECa14]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|256017391|ref|ZP_05431256.1| putative oxidoreductase Fe-S binding subunit [Shigella sp. D9]
 gi|332278390|ref|ZP_08390803.1| FeS binding subunit/NAD/FAD-binding subunit [Shigella sp. D9]
 gi|332100742|gb|EGJ04088.1| FeS binding subunit/NAD/FAD-binding subunit [Shigella sp. D9]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|238911813|ref|ZP_04655650.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|222034187|emb|CAP76928.1| Protein aegA [Escherichia coli LF82]
 gi|312947052|gb|ADR27879.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|213053234|ref|ZP_03346112.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 212

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|197263981|ref|ZP_03164055.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242236|gb|EDY24856.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|220926639|ref|YP_002501941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219951246|gb|ACL61638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 960

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
            C+ C+H  C  VCPV    ++GE       + CI    CE  CP  
Sbjct: 781 PCMHCEHAPCEPVCPVAASVHDGEGLNVQVYNRCIGTRFCEANCPYK 827


>gi|82777844|ref|YP_404193.1| putative oxidoreductase Fe-S binding subunit [Shigella dysenteriae
           Sd197]
 gi|81241992|gb|ABB62702.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|26248837|ref|NP_754877.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           CFT073]
 gi|227887504|ref|ZP_04005309.1| Fe-S center and glutamate synthase (GltD) protein [Escherichia coli
           83972]
 gi|26109243|gb|AAN81445.1|AE016764_127 AegA protein [Escherichia coli CFT073]
 gi|227835854|gb|EEJ46320.1| Fe-S center and glutamate synthase (GltD) protein [Escherichia coli
           83972]
 gi|307554498|gb|ADN47273.1| putative oxidoreductase [Escherichia coli ABU 83972]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|193068445|ref|ZP_03049408.1| protein aegA [Escherichia coli E110019]
 gi|260869155|ref|YP_003235557.1| fused putative oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O111:H- str. 11128]
 gi|293446820|ref|ZP_06663242.1| oxidoreductase Fe-S binding subunit [Escherichia coli B088]
 gi|331669202|ref|ZP_08370050.1| protein AegA [Escherichia coli TA271]
 gi|331678448|ref|ZP_08379123.1| protein AegA [Escherichia coli H591]
 gi|192958397|gb|EDV88837.1| protein aegA [Escherichia coli E110019]
 gi|257765511|dbj|BAI37006.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O111:H- str. 11128]
 gi|291323650|gb|EFE63078.1| oxidoreductase Fe-S binding subunit [Escherichia coli B088]
 gi|323177415|gb|EFZ63003.1| protein aegA [Escherichia coli 1180]
 gi|331064396|gb|EGI36307.1| protein AegA [Escherichia coli TA271]
 gi|331074908|gb|EGI46228.1| protein AegA [Escherichia coli H591]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|46204691|ref|ZP_00049610.2| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone
           oxidoreductase 23 kD subunit (chain I) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 196

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E  ++   E       +  K++ L +  + +  
Sbjct: 117 IV--EGPNFEFSVETREEL------LYDKEKLLANGDRWERE 150


>gi|16130393|ref|NP_416963.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|89109273|ref|AP_003053.1| fused predicted FeS binding subunit and predicted NAD/FAD-binding
           subunit of oxidoreductase [Escherichia coli str. K-12
           substr. W3110]
 gi|157161927|ref|YP_001459245.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli HS]
 gi|170019248|ref|YP_001724202.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli ATCC
           8739]
 gi|170082077|ref|YP_001731397.1| fused oxidoreductase: FeS binding subunit; NAD/FAD-binding subunit
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188496164|ref|ZP_03003434.1| protein aegA [Escherichia coli 53638]
 gi|194437640|ref|ZP_03069736.1| protein aegA [Escherichia coli 101-1]
 gi|238901631|ref|YP_002927427.1| fused putative oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli BW2952]
 gi|253772641|ref|YP_003035472.1| oxidoreductase Fe-S binding subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162442|ref|YP_003045550.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli B
           str. REL606]
 gi|256021847|ref|ZP_05435712.1| putative oxidoreductase Fe-S binding subunit [Escherichia sp.
           4_1_40B]
 gi|307139101|ref|ZP_07498457.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           H736]
 gi|331643082|ref|ZP_08344217.1| protein AegA [Escherichia coli H736]
 gi|2506464|sp|P37127|AEGA_ECOLI RecName: Full=Protein AegA
 gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|85675416|dbj|BAA16342.2| fused predicted FeS binding subunit and predicted NAD/FAD-binding
           subunit of oxidoreductase [Escherichia coli str. K12
           substr. W3110]
 gi|157067607|gb|ABV06862.1| protein aegA [Escherichia coli HS]
 gi|169754176|gb|ACA76875.1| glutamate synthase, small subunit [Escherichia coli ATCC 8739]
 gi|169889912|gb|ACB03619.1| fused predicted oxidoreductase: FeS binding subunit;
           NAD/FAD-binding subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|188491363|gb|EDU66466.1| protein aegA [Escherichia coli 53638]
 gi|194423446|gb|EDX39437.1| protein aegA [Escherichia coli 101-1]
 gi|238861231|gb|ACR63229.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli BW2952]
 gi|242378067|emb|CAQ32838.1| putative oxidoreductase, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|253323685|gb|ACT28287.1| glutamate synthase, small subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974343|gb|ACT40014.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli B str. REL606]
 gi|253978510|gb|ACT44180.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli BL21(DE3)]
 gi|260448454|gb|ACX38876.1| glutamate synthase, small subunit [Escherichia coli DH1]
 gi|309702747|emb|CBJ02076.1| oxidoreductase [Escherichia coli ETEC H10407]
 gi|315137090|dbj|BAJ44249.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli DH1]
 gi|315615710|gb|EFU96342.1| protein aegA [Escherichia coli 3431]
 gi|323941277|gb|EGB37462.1| glutamate synthase [Escherichia coli E482]
 gi|323961260|gb|EGB56872.1| glutamate synthase [Escherichia coli H489]
 gi|323971014|gb|EGB66263.1| glutamate synthase [Escherichia coli TA007]
 gi|331039880|gb|EGI12100.1| protein AegA [Escherichia coli H736]
 gi|332344286|gb|AEE57620.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|323176564|gb|EFZ62156.1| nitrate reductase, beta subunit [Escherichia coli 1180]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|295103391|emb|CBL00935.1| Fe-S-cluster-containing hydrogenase components 1 [Faecalibacterium
           prausnitzii SL3/3]
          Length = 214

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            + C  C+   C   CP          +  +  D+CI CG C   CP      + E
Sbjct: 118 PDTCRQCEDPACGNACPQKAITTDSRGIRVVDTDKCIGCGACHDACPWHMPTVNPE 173



 Score = 40.0 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V T+ CI C    C + CP                +CI CG C   CP  A+    
Sbjct: 148 VDTDKCIGC--GACHDACPWHMPTVNPETGK--SSKCIACGACVAGCPSGALSIVD 199


>gi|281601885|gb|ADA74869.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017]
          Length = 218

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|269928392|ref|YP_003320713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787749|gb|ACZ39891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 290

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C +  C+E CP       E   + +  D C  CG C P CP   I  D   
Sbjct: 102 SDVCKHCVNAGCMEACPTGAIIRTEFDTVVVQQDVCNGCGYCVPACPFGVIALDLGD 158


>gi|306813550|ref|ZP_07447738.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli NC101]
 gi|331646740|ref|ZP_08347843.1| nitrate reductase, beta subunit [Escherichia coli M605]
 gi|331657474|ref|ZP_08358436.1| nitrate reductase, beta subunit [Escherichia coli TA206]
 gi|222033218|emb|CAP75958.1| Respiratory nitrate reductase 2 beta chain [Escherichia coli LF82]
 gi|281178593|dbj|BAI54923.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli SE15]
 gi|305853110|gb|EFM53551.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli NC101]
 gi|312946053|gb|ADR26880.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315298540|gb|EFU57795.1| nitrate reductase, beta subunit [Escherichia coli MS 16-3]
 gi|331045492|gb|EGI17619.1| nitrate reductase, beta subunit [Escherichia coli M605]
 gi|331055722|gb|EGI27731.1| nitrate reductase, beta subunit [Escherichia coli TA206]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|218884037|ref|YP_002428419.1| iindolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus kamchatkensis 1221n]
 gi|218765653|gb|ACL11052.1| iindolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus kamchatkensis 1221n]
          Length = 634

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YVV  E C  C+       CP     EG     I  ++C  CG+C   C  DAI
Sbjct: 577 PYVVDAEKCTGCRACIASTGCPAIIMVEG--KAYIIEEDCNGCGLCVRYCQYDAI 629


>gi|167622119|ref|YP_001672413.1| nitrate reductase subunit beta [Shewanella halifaxensis HAW-EB4]
 gi|167352141|gb|ABZ74754.1| nitrate reductase, beta subunit [Shewanella halifaxensis HAW-EB4]
          Length = 512

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|153810913|ref|ZP_01963581.1| hypothetical protein RUMOBE_01299 [Ruminococcus obeum ATCC 29174]
 gi|149832801|gb|EDM87884.1| hypothetical protein RUMOBE_01299 [Ruminococcus obeum ATCC 29174]
          Length = 300

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V +E C  CK       CP       +  + I   +C  CG C  +CP   I
Sbjct: 174 VNSELCKGCKKCAIEAACPNGVAKVVDGKITIDEMQCRHCGRCVGKCPFHTI 225


>gi|154483804|ref|ZP_02026252.1| hypothetical protein EUBVEN_01508 [Eubacterium ventriosum ATCC
          27560]
 gi|149735295|gb|EDM51181.1| hypothetical protein EUBVEN_01508 [Eubacterium ventriosum ATCC
          27560]
          Length = 56

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV       +   I  D CI+CG C   CP D+I  D
Sbjct: 1  MAYKITDGCIGC--GACEGTCPVGAISNDGSVCVIDADTCIECGACAGACPTDSITLD 56


>gi|145298774|ref|YP_001141615.1| hydrogenase 2 protein HybA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851546|gb|ABO89867.1| hydrogenase-2 small subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 348

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   P  C  C  C   CP D  K D +
Sbjct: 111 IKKQCMHCVDPNCVSVCPVQALTKDPKTGIVHYDPSVCTGCRYCMVGCPFDVPKYDYD 168


>gi|170020201|ref|YP_001725155.1| nitrate reductase, beta subunit [Escherichia coli ATCC 8739]
 gi|209918747|ref|YP_002292831.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli SE11]
 gi|218704939|ref|YP_002412458.1| nitrate reductase 2 subunit beta [Escherichia coli UMN026]
 gi|260855188|ref|YP_003229079.1| nitrate reductase 2, beta subunit [Escherichia coli O26:H11 str.
           11368]
 gi|260867908|ref|YP_003234310.1| nitrate reductase 2, beta subunit [Escherichia coli O111:H- str.
           11128]
 gi|293404945|ref|ZP_06648937.1| nitrate reductase [Escherichia coli FVEC1412]
 gi|293445871|ref|ZP_06662293.1| nitrate reductase [Escherichia coli B088]
 gi|298380592|ref|ZP_06990191.1| respiratory nitrate reductase subunit 2 beta [Escherichia coli
           FVEC1302]
 gi|300824463|ref|ZP_07104575.1| nitrate reductase, beta subunit [Escherichia coli MS 119-7]
 gi|300896610|ref|ZP_07115128.1| nitrate reductase, beta subunit [Escherichia coli MS 198-1]
 gi|300907321|ref|ZP_07124972.1| nitrate reductase, beta subunit [Escherichia coli MS 84-1]
 gi|301307235|ref|ZP_07213256.1| nitrate reductase, beta subunit [Escherichia coli MS 124-1]
 gi|307314784|ref|ZP_07594379.1| nitrate reductase, beta subunit [Escherichia coli W]
 gi|309796124|ref|ZP_07690535.1| nitrate reductase, beta subunit [Escherichia coli MS 145-7]
 gi|312971632|ref|ZP_07785807.1| nitrate reductase, beta subunit [Escherichia coli 1827-70]
 gi|331677343|ref|ZP_08378018.1| nitrate reductase, beta subunit [Escherichia coli H591]
 gi|169755129|gb|ACA77828.1| nitrate reductase, beta subunit [Escherichia coli ATCC 8739]
 gi|209912006|dbj|BAG77080.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli SE11]
 gi|218432036|emb|CAR12922.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli UMN026]
 gi|257753837|dbj|BAI25339.1| nitrate reductase 2, beta subunit [Escherichia coli O26:H11 str.
           11368]
 gi|257764264|dbj|BAI35759.1| nitrate reductase 2, beta subunit [Escherichia coli O111:H- str.
           11128]
 gi|291322701|gb|EFE62129.1| nitrate reductase [Escherichia coli B088]
 gi|291427153|gb|EFF00180.1| nitrate reductase [Escherichia coli FVEC1412]
 gi|298278034|gb|EFI19548.1| respiratory nitrate reductase subunit 2 beta [Escherichia coli
           FVEC1302]
 gi|300359522|gb|EFJ75392.1| nitrate reductase, beta subunit [Escherichia coli MS 198-1]
 gi|300400957|gb|EFJ84495.1| nitrate reductase, beta subunit [Escherichia coli MS 84-1]
 gi|300523018|gb|EFK44087.1| nitrate reductase, beta subunit [Escherichia coli MS 119-7]
 gi|300837574|gb|EFK65334.1| nitrate reductase, beta subunit [Escherichia coli MS 124-1]
 gi|306905751|gb|EFN36278.1| nitrate reductase, beta subunit [Escherichia coli W]
 gi|308120185|gb|EFO57447.1| nitrate reductase, beta subunit [Escherichia coli MS 145-7]
 gi|310336229|gb|EFQ01429.1| nitrate reductase, beta subunit [Escherichia coli 1827-70]
 gi|315060745|gb|ADT75072.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli W]
 gi|315253442|gb|EFU33410.1| nitrate reductase, beta subunit [Escherichia coli MS 85-1]
 gi|320179710|gb|EFW54658.1| Respiratory nitrate reductase beta chain [Shigella boydii ATCC
           9905]
 gi|320201753|gb|EFW76329.1| Respiratory nitrate reductase beta chain [Escherichia coli EC4100B]
 gi|323157418|gb|EFZ43531.1| nitrate reductase, beta subunit [Escherichia coli EPECa14]
 gi|323378691|gb|ADX50959.1| nitrate reductase, beta subunit [Escherichia coli KO11]
 gi|323947829|gb|EGB43826.1| nitrate reductase [Escherichia coli H120]
 gi|324021110|gb|EGB90329.1| nitrate reductase, beta subunit [Escherichia coli MS 117-3]
 gi|324119410|gb|EGC13295.1| nitrate reductase [Escherichia coli E1167]
 gi|331073803|gb|EGI45123.1| nitrate reductase, beta subunit [Escherichia coli H591]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|170724604|ref|YP_001758630.1| dimethylsulfoxide reductase subunit B [Shewanella woodyi ATCC
           51908]
 gi|169809951|gb|ACA84535.1| dimethylsulfoxide reductase, chain B [Shewanella woodyi ATCC 51908]
          Length = 225

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D+
Sbjct: 78  AYYMSIGCNHCSEPVCVKACPTGAMHKRRQDGLVHVAQDLCIGCESCARACPYDAPQIDS 137

Query: 60  E 60
           E
Sbjct: 138 E 138



 Score = 34.2 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 13/72 (18%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVD 53
           +V  + CI C+   C   CP D              +C  C          VC   CP+ 
Sbjct: 112 HVAQDLCIGCE--SCARACPYDAPQIDSERKV--MTKCDGCFERIAEGRKPVCVESCPLR 167

Query: 54  AIKPDTEPGLEL 65
           A+  DT   L  
Sbjct: 168 ALDFDTMDNLRA 179


>gi|91210708|ref|YP_540694.1| cryptic nitrate reductase 2 subunit beta [Escherichia coli UTI89]
 gi|117623705|ref|YP_852618.1| cryptic nitrate reductase 2, beta subunit [Escherichia coli APEC
           O1]
 gi|170683492|ref|YP_001743761.1| nitrate reductase 2, beta subunit [Escherichia coli SMS-3-5]
 gi|218558392|ref|YP_002391305.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli S88]
 gi|218700097|ref|YP_002407726.1| nitrate reductase 2 (NRZ) subunit beta [Escherichia coli IAI39]
 gi|237705447|ref|ZP_04535928.1| cryptic nitrate reductase 2 [Escherichia sp. 3_2_53FAA]
 gi|293409813|ref|ZP_06653389.1| nitrate reductase [Escherichia coli B354]
 gi|293414818|ref|ZP_06657461.1| nitrate reductase [Escherichia coli B185]
 gi|300939109|ref|ZP_07153800.1| nitrate reductase, beta subunit [Escherichia coli MS 21-1]
 gi|91072282|gb|ABE07163.1| cryptic nitrate reductase 2, beta subunit [Escherichia coli UTI89]
 gi|115512829|gb|ABJ00904.1| cryptic nitrate reductase 2, beta subunit [Escherichia coli APEC
           O1]
 gi|170521210|gb|ACB19388.1| nitrate reductase 2, beta subunit [Escherichia coli SMS-3-5]
 gi|218365161|emb|CAR02878.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli S88]
 gi|218370083|emb|CAR17860.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli IAI39]
 gi|226900204|gb|EEH86463.1| cryptic nitrate reductase 2 [Escherichia sp. 3_2_53FAA]
 gi|291432466|gb|EFF05445.1| nitrate reductase [Escherichia coli B185]
 gi|291470281|gb|EFF12765.1| nitrate reductase [Escherichia coli B354]
 gi|294491907|gb|ADE90663.1| nitrate reductase 2, beta subunit [Escherichia coli IHE3034]
 gi|300456011|gb|EFK19504.1| nitrate reductase, beta subunit [Escherichia coli MS 21-1]
 gi|307627017|gb|ADN71321.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli UM146]
 gi|315289795|gb|EFU49185.1| nitrate reductase, beta subunit [Escherichia coli MS 110-3]
 gi|323952624|gb|EGB48495.1| nitrate reductase [Escherichia coli H252]
 gi|323956796|gb|EGB52530.1| nitrate reductase [Escherichia coli H263]
 gi|324007420|gb|EGB76639.1| nitrate reductase, beta subunit [Escherichia coli MS 57-2]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|88602555|ref|YP_502733.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188017|gb|ABD41014.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 201

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C    C++VCP       E+   + +   +CI CGVC   CP   I+         
Sbjct: 59  RCRHCDPAPCMQVCPTGSLSRDESTGSVLVDYLKCIRCGVCAMACPFGIIEFRKVIKPAP 118

Query: 66  WLKINSE 72
             ++N++
Sbjct: 119 DREVNAK 125


>gi|74312168|ref|YP_310587.1| cryptic nitrate reductase 2 subunit beta [Shigella sonnei Ss046]
 gi|73855645|gb|AAZ88352.1| cryptic nitrate reductase 2, beta subunit [Shigella sonnei Ss046]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|26247757|ref|NP_753797.1| respiratory nitrate reductase 2 subunit beta [Escherichia coli
           CFT073]
 gi|227886139|ref|ZP_04003944.1| respiratory nitrate reductase 2 beta chain [Escherichia coli 83972]
 gi|300976496|ref|ZP_07173479.1| nitrate reductase, beta subunit [Escherichia coli MS 45-1]
 gi|301046712|ref|ZP_07193838.1| nitrate reductase, beta subunit [Escherichia coli MS 185-1]
 gi|26108159|gb|AAN80359.1|AE016760_218 Respiratory nitrate reductase 2 beta chain [Escherichia coli
           CFT073]
 gi|227836896|gb|EEJ47362.1| respiratory nitrate reductase 2 beta chain [Escherichia coli 83972]
 gi|300301351|gb|EFJ57736.1| nitrate reductase, beta subunit [Escherichia coli MS 185-1]
 gi|300410068|gb|EFJ93606.1| nitrate reductase, beta subunit [Escherichia coli MS 45-1]
 gi|307553482|gb|ADN46257.1| nitrate reductase 2, beta subunit [Escherichia coli ABU 83972]
 gi|315291401|gb|EFU50761.1| nitrate reductase, beta subunit [Escherichia coli MS 153-1]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|320449774|ref|YP_004201870.1| NrfC protein [Thermus scotoductus SA-01]
 gi|320149943|gb|ADW21321.1| NrfC protein [Thermus scotoductus SA-01]
          Length = 195

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            E C+ C+ + CV VCP    Y+ +  L  + P +CI CG C   CP DA
Sbjct: 55  PEQCLHCETSPCVPVCPTGASYQTQEGLVLVDPKKCIACGACIAACPYDA 104


>gi|332162877|ref|YP_004299454.1| hydrogenase 2 protein HybA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604279|emb|CBY25777.1| hydrogenase-2 operon protein hybA precursor [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667107|gb|ADZ43751.1| hydrogenase 2 protein HybA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863324|emb|CBX73447.1| hydrogenase-2 operon protein hybA [Yersinia enterocolitica W22703]
          Length = 342

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D    
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYDYHNP 172

Query: 63  LEL 65
              
Sbjct: 173 FGK 175


>gi|308274447|emb|CBX31046.1| hypothetical protein N47_E45580 [uncultured Desulfobacterium sp.]
          Length = 1415

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
             YV  E C  C    CV  CP          +  I    C  CGVC  ECP  AI+ +  
Sbjct: 1341 AYVEAEKCASCL--ICVRSCPYGVPKINAEGVSEIDVALCHGCGVCAAECPAKAIELNWY 1398

Query: 61   PGLE 64
               +
Sbjct: 1399 EDDQ 1402


>gi|302517468|ref|ZP_07269810.1| formate dehydrogenase, beta subunit [Streptomyces sp. SPB78]
 gi|302426363|gb|EFK98178.1| formate dehydrogenase, beta subunit [Streptomyces sp. SPB78]
          Length = 315

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+     
Sbjct: 126 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIEQREGD 182


>gi|254509887|ref|ZP_05121954.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533598|gb|EEE36586.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 631

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             C +  C+++CP        + +AI P  C  CG C   CP  AI  +  P
Sbjct: 257 TGCSN--CLDICPTGAITPAGDHVAIDPMICAGCGECSALCPSTAITYEDPP 306



 Score = 35.3 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V   +C LC    CV +CP     +  +   ++  +  C+ CG+C   CP  AI
Sbjct: 478 VDAGSCTLCL--SCVSLCPSGALIDNPDKPQLNFQQDACLQCGICRTICPEQAI 529


>gi|157145752|ref|YP_001453071.1| hypothetical protein CKO_01502 [Citrobacter koseri ATCC BAA-895]
 gi|157082957|gb|ABV12635.1| hypothetical protein CKO_01502 [Citrobacter koseri ATCC BAA-895]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|187929594|ref|YP_001900081.1| nitrate reductase subunit beta [Ralstonia pickettii 12J]
 gi|309781626|ref|ZP_07676360.1| nitrate reductase, beta subunit [Ralstonia sp. 5_7_47FAA]
 gi|187726484|gb|ACD27649.1| nitrate reductase, beta subunit [Ralstonia pickettii 12J]
 gi|308919601|gb|EFP65264.1| nitrate reductase, beta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 508

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVAACPSGSIYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|117926901|ref|YP_867518.1| NADH dehydrogenase subunit I [Magnetococcus sp. MC-1]
 gi|156633523|sp|A0LDR9|NUOI_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|117610657|gb|ABK46112.1| NADH dehydrogenase subunit I [Magnetococcus sp. MC-1]
          Length = 164

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 21/104 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDA 54
            E C+ CK   C  +CP    Y   +              I   +CI CG+CE  CPV+A
Sbjct: 61  EERCVACKL--CEAICPAQAIYIEIDTESRADKRLTKVYDIDLFKCIYCGLCEEACPVEA 118

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
           I          +   N+ +         K + L +         
Sbjct: 119 IVMG-PYLDMAYEDRNARF-------YKKDQLLANGESWRAEID 154


>gi|78777018|ref|YP_393333.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497558|gb|ABB44098.1| Formate dehydrogenase beta subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 196

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C +VCPVDCFY   + +     D+CI CG C   CP  A
Sbjct: 60  ACMHCTDAPCQQVCPVDCFYIRADGIVLHDKDKCIGCGYCLFACPFGA 107


>gi|29347824|ref|NP_811327.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339726|gb|AAO77521.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
          Length = 76

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV+   EG+   +I+PD C DCG C   CP +AI P
Sbjct: 21 MAYVISDDCIAC--GTCIDECPVEAISEGD-IYSINPDVCTDCGTCADVCPSEAIHP 74


>gi|15801671|ref|NP_287689.1| cryptic nitrate reductase 2, beta subunit [Escherichia coli O157:H7
           EDL933]
 gi|15831324|ref|NP_310097.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli O157:H7
           str. Sakai]
 gi|168748928|ref|ZP_02773950.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756114|ref|ZP_02781121.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761437|ref|ZP_02786444.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768996|ref|ZP_02794003.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774298|ref|ZP_02799305.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781444|ref|ZP_02806451.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788474|ref|ZP_02813481.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168799400|ref|ZP_02824407.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|195936960|ref|ZP_03082342.1| cryptic nitrate reductase 2, beta subunit [Escherichia coli O157:H7
           str. EC4024]
 gi|208810875|ref|ZP_03252708.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815766|ref|ZP_03256945.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819510|ref|ZP_03259830.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400809|ref|YP_002270471.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329131|ref|ZP_03445211.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793014|ref|YP_003077851.1| nitrate reductase 2 (NRZ) subunit beta [Escherichia coli O157:H7
           str. TW14359]
 gi|261224569|ref|ZP_05938850.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261257140|ref|ZP_05949673.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli O157:H7
           str. FRIK966]
 gi|291282569|ref|YP_003499387.1| Nitrate reductase 2, beta subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|12515221|gb|AAG56303.1|AE005359_3 cryptic nitrate reductase 2, beta subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|13361536|dbj|BAB35493.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli O157:H7
           str. Sakai]
 gi|187770169|gb|EDU34013.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016661|gb|EDU54783.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000961|gb|EDU69947.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356711|gb|EDU75130.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361961|gb|EDU80380.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368174|gb|EDU86590.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189371734|gb|EDU90150.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189378198|gb|EDU96614.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208724381|gb|EDZ74089.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732414|gb|EDZ81102.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739633|gb|EDZ87315.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162209|gb|ACI39642.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209770768|gb|ACI83696.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli]
 gi|209770770|gb|ACI83697.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli]
 gi|209770772|gb|ACI83698.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli]
 gi|209770774|gb|ACI83699.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli]
 gi|209770776|gb|ACI83700.1| cryptic nitrate reductase 2 beta subunit [Escherichia coli]
 gi|217317570|gb|EEC25998.1| nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592414|gb|ACT71775.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli O157:H7
           str. TW14359]
 gi|290762442|gb|ADD56403.1| Nitrate reductase 2, beta subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|320190078|gb|EFW64729.1| Respiratory nitrate reductase beta chain [Escherichia coli O157:H7
           str. EC1212]
 gi|320636897|gb|EFX06762.1| Nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           G5101]
 gi|320642255|gb|EFX11548.1| Nitrate reductase 2, beta subunit [Escherichia coli O157:H- str.
           493-89]
 gi|320647606|gb|EFX16363.1| Nitrate reductase 2, beta subunit [Escherichia coli O157:H- str. H
           2687]
 gi|320653237|gb|EFX21376.1| Nitrate reductase 2, beta subunit [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658942|gb|EFX26568.1| Nitrate reductase 2, beta subunit [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320663779|gb|EFX31008.1| Nitrate reductase 2, beta subunit [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340659|gb|EGD64456.1| Respiratory nitrate reductase beta chain [Escherichia coli O157:H7
           str. 1044]
 gi|326340911|gb|EGD64704.1| Respiratory nitrate reductase beta chain [Escherichia coli O157:H7
           str. 1125]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|333002267|gb|EGK21831.1| hydrogenase-4 component A [Shigella flexneri K-272]
 gi|333016088|gb|EGK35420.1| hydrogenase-4 component A [Shigella flexneri K-227]
          Length = 205

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 595

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +YV+  E C  C  T C + CP        +N   I  ++CI CG C  +C   AI 
Sbjct: 539 SYVIDREKCRGC--TLCAKNCPAGAIIGTVKNPHIIDNEKCIKCGACMEKCHFGAIY 593


>gi|323170257|gb|EFZ55910.1| hydrogenase-4 component A [Escherichia coli LT-68]
          Length = 200

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 46 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 92


>gi|320195576|gb|EFW70201.1| Respiratory nitrate reductase beta chain [Escherichia coli
           WV_060327]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|313201532|ref|YP_004040190.1| RnfABCDGE type electron transport complex subunit B [Methylovorus
           sp. MP688]
 gi|312440848|gb|ADQ84954.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus
           sp. MP688]
          Length = 280

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  +  
Sbjct: 94  AFIDEQTCIGC--TLCIQACPVDAILGASKQMHTVIADECTGCELCIAPCPVDCITMEPP 151

Query: 61  PGLE 64
           P  +
Sbjct: 152 PVTQ 155



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           M  V+ + C  C+   C+  CPVDC       +   P  
Sbjct: 123 MHTVIADECTGCEL--CIAPCPVDCITMEPPPVTQSPRW 159


>gi|310777929|ref|YP_003966262.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus
           DSM 2926]
 gi|309747252|gb|ADO81914.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus
           DSM 2926]
          Length = 366

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           V  E CI C    C ++CP    +  EN    I  D+C  CGVC  +CP DA+
Sbjct: 312 VSKEKCIGC--GICADLCPYHAIHINENKLAVIDADKCFGCGVCVSKCPKDAM 362


>gi|331682941|ref|ZP_08383549.1| nitrate reductase, beta subunit [Escherichia coli H299]
 gi|331079762|gb|EGI50952.1| nitrate reductase, beta subunit [Escherichia coli H299]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|301025542|ref|ZP_07189071.1| nitrate reductase, beta subunit [Escherichia coli MS 69-1]
 gi|300395964|gb|EFJ79502.1| nitrate reductase, beta subunit [Escherichia coli MS 69-1]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|269102696|ref|ZP_06155393.1| formate dehydrogenase-O iron-sulfur subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162594|gb|EEZ41090.1| formate dehydrogenase-O iron-sulfur subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 207

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF + E+ +   + D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSQTEDGIVQHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           + + +
Sbjct: 110 QAFAE 114


>gi|225028182|ref|ZP_03717374.1| hypothetical protein EUBHAL_02454 [Eubacterium hallii DSM 3353]
 gi|224954494|gb|EEG35703.1| hypothetical protein EUBHAL_02454 [Eubacterium hallii DSM 3353]
          Length = 56

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV++++CI C    C   CP     EG+    I  D C+DCG C   CP  AI  +
Sbjct: 1  MAYVISDDCISC--GTCEGECPAGAISEGDGKYEIDADTCMDCGSCAGACPAGAISQE 56


>gi|218553994|ref|YP_002386907.1| nitrate reductase 2 subunit beta [Escherichia coli IAI1]
 gi|218360762|emb|CAQ98328.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli IAI1]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
          Length = 619

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M + +  + CI C    C   CPV C     E    I+   CI CG C   CPV AI   
Sbjct: 539 MHFEIDKDKCIGCSL--CARKCPVSCISGSREEKYTINQLSCIKCGTCMDVCPVKAISKI 596

Query: 59  TEPGLELWLKINSE 72
                E+     +E
Sbjct: 597 PGMHPEVKAMREAE 610


>gi|145590639|ref|YP_001152641.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282407|gb|ABP49989.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 215

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDA 54
            V + C  C++  CV+ CP    Y+   +  + ++ + CI CG C   CP  A
Sbjct: 81  FVPKQCNHCENAPCVKPCPTGATYKRVEDGLVLVNDELCIGCGACIQACPYGA 133


>gi|57642010|ref|YP_184488.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160334|dbj|BAD86264.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
          Length = 168

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
          V  NC  C+   C++VCP    Y   +    I+P++CI C +C   CP      D
Sbjct: 44 VPINCRHCEKAPCMDVCPAGAIYRDSDGAVIINPNKCIGCLMCLAACPFGVPTFD 98


>gi|323184480|gb|EFZ69855.1| protein aegA [Escherichia coli 1357]
          Length = 654

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 51  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 103


>gi|308051289|ref|YP_003914855.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
 gi|307633479|gb|ADN77781.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C++VCPV+ F + E+ +     + CI CG C   CP  A
Sbjct: 53  ISVACMHCADAPCMKVCPVNVFSKTEDGIVLHDKERCIGCGYCLYACPFGA 103


>gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 590

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + T+ CI C  T C  +CPV     + +    I   +C+ CG C+  CPV AI  D
Sbjct: 537 INTDLCIGC--TRCARICPVGAISGKVKEPHEIDDAKCVRCGQCKQTCPVSAIFVD 590


>gi|239906941|ref|YP_002953682.1| nitroreductase family protein [Desulfovibrio magneticus RS-1]
 gi|239796807|dbj|BAH75796.1| nitroreductase family protein [Desulfovibrio magneticus RS-1]
          Length = 304

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
           C+ C   +CV VCP      G+  + +    CI CG C   CP  A  I  D  
Sbjct: 15 ACVGC--GECVTVCPSGVLSLGDGLVVVAGAGCIGCGQCRAVCPQCALTIPGDDP 67


>gi|218705966|ref|YP_002413485.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UMN026]
 gi|293405903|ref|ZP_06649895.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1412]
 gi|298381651|ref|ZP_06991250.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1302]
 gi|218433063|emb|CAR13958.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli UMN026]
 gi|291428111|gb|EFF01138.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1412]
 gi|298279093|gb|EFI20607.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1302]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|218689390|ref|YP_002397602.1| nitrate reductase 2 (NRZ) subunit beta [Escherichia coli ED1a]
 gi|218426954|emb|CAR07817.2| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli ED1a]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|209884187|ref|YP_002288044.1| nitrate reductase, beta subunit [Oligotropha carboxidovorans OM5]
 gi|209872383|gb|ACI92179.1| nitrate reductase, beta subunit [Oligotropha carboxidovorans OM5]
          Length = 506

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|170681460|ref|YP_001744650.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           SMS-3-5]
 gi|170519178|gb|ACB17356.1| protein aegA [Escherichia coli SMS-3-5]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|82544916|ref|YP_408863.1| oxidoreductase Fe-S binding subunit [Shigella boydii Sb227]
 gi|81246327|gb|ABB67035.1| putative oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
 gi|323944683|gb|EGB40750.1| glutamate synthase [Escherichia coli H120]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|15802990|ref|NP_289020.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15832584|ref|NP_311357.1| oxidoreductase Fe-S binding subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|168748482|ref|ZP_02773504.1| protein aegA [Escherichia coli O157:H7 str. EC4113]
 gi|168756232|ref|ZP_02781239.1| protein aegA [Escherichia coli O157:H7 str. EC4401]
 gi|168761069|ref|ZP_02786076.1| protein aegA [Escherichia coli O157:H7 str. EC4501]
 gi|168768552|ref|ZP_02793559.1| protein aegA [Escherichia coli O157:H7 str. EC4486]
 gi|168773627|ref|ZP_02798634.1| protein aegA [Escherichia coli O157:H7 str. EC4196]
 gi|168778426|ref|ZP_02803433.1| protein aegA [Escherichia coli O157:H7 str. EC4076]
 gi|168787806|ref|ZP_02812813.1| protein aegA [Escherichia coli O157:H7 str. EC869]
 gi|168798831|ref|ZP_02823838.1| protein aegA [Escherichia coli O157:H7 str. EC508]
 gi|195936609|ref|ZP_03081991.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806285|ref|ZP_03248622.1| protein aegA [Escherichia coli O157:H7 str. EC4206]
 gi|208813183|ref|ZP_03254512.1| protein aegA [Escherichia coli O157:H7 str. EC4045]
 gi|208819860|ref|ZP_03260180.1| protein aegA [Escherichia coli O157:H7 str. EC4042]
 gi|209396864|ref|YP_002271936.1| protein aegA [Escherichia coli O157:H7 str. EC4115]
 gi|217327657|ref|ZP_03443740.1| protein aegA [Escherichia coli O157:H7 str. TW14588]
 gi|254794412|ref|YP_003079249.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223100|ref|ZP_05937381.1| fused predicted oxidoreductase: FeS binding subunit, NAD
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259348|ref|ZP_05951881.1| fused predicted oxidoreductase: FeS binding subunit, NAD
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291283687|ref|YP_003500505.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|331653887|ref|ZP_08354888.1| protein AegA [Escherichia coli M718]
 gi|12516846|gb|AAG57577.1|AE005476_2 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|13362800|dbj|BAB36753.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|187770732|gb|EDU34576.1| protein aegA [Escherichia coli O157:H7 str. EC4196]
 gi|188017016|gb|EDU55138.1| protein aegA [Escherichia coli O157:H7 str. EC4113]
 gi|189003194|gb|EDU72180.1| protein aegA [Escherichia coli O157:H7 str. EC4076]
 gi|189356550|gb|EDU74969.1| protein aegA [Escherichia coli O157:H7 str. EC4401]
 gi|189362302|gb|EDU80721.1| protein aegA [Escherichia coli O157:H7 str. EC4486]
 gi|189368496|gb|EDU86912.1| protein aegA [Escherichia coli O157:H7 str. EC4501]
 gi|189372387|gb|EDU90803.1| protein aegA [Escherichia coli O157:H7 str. EC869]
 gi|189378607|gb|EDU97023.1| protein aegA [Escherichia coli O157:H7 str. EC508]
 gi|208726086|gb|EDZ75687.1| protein aegA [Escherichia coli O157:H7 str. EC4206]
 gi|208734460|gb|EDZ83147.1| protein aegA [Escherichia coli O157:H7 str. EC4045]
 gi|208739983|gb|EDZ87665.1| protein aegA [Escherichia coli O157:H7 str. EC4042]
 gi|209158264|gb|ACI35697.1| protein aegA [Escherichia coli O157:H7 str. EC4115]
 gi|209763798|gb|ACI80211.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209763800|gb|ACI80212.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209763802|gb|ACI80213.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209763804|gb|ACI80214.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209763806|gb|ACI80215.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|217320024|gb|EEC28449.1| protein aegA [Escherichia coli O157:H7 str. TW14588]
 gi|254593812|gb|ACT73173.1| fused predicted oxidoreductase: FeS binding subunit, NAD
           [Escherichia coli O157:H7 str. TW14359]
 gi|290763560|gb|ADD57521.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|320188799|gb|EFW63458.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640971|gb|EFX10455.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320646253|gb|EFX15180.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651759|gb|EFX20139.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320662903|gb|EFX30231.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667790|gb|EFX34701.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326340262|gb|EGD64066.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. 1125]
 gi|326344947|gb|EGD68691.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. 1044]
 gi|331048736|gb|EGI20812.1| protein AegA [Escherichia coli M718]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|113972048|ref|YP_735841.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|114049278|ref|YP_739828.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|117922349|ref|YP_871541.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|113886732|gb|ABI40784.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
 gi|113890720|gb|ABI44771.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
 gi|117614681|gb|ABK50135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 198

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|120600656|ref|YP_965230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146291443|ref|YP_001181867.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120560749|gb|ABM26676.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563133|gb|ABP74068.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319428326|gb|ADV56400.1| formate dehydrogenase, FeS subunit, FdhB [Shewanella putrefaciens
           200]
          Length = 198

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|157155091|ref|YP_001463790.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           E24377A]
 gi|191167628|ref|ZP_03029438.1| protein aegA [Escherichia coli B7A]
 gi|193064770|ref|ZP_03045848.1| protein aegA [Escherichia coli E22]
 gi|194427362|ref|ZP_03059912.1| protein aegA [Escherichia coli B171]
 gi|209919940|ref|YP_002294024.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           SE11]
 gi|218554991|ref|YP_002387904.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           IAI1]
 gi|157077121|gb|ABV16829.1| protein aegA [Escherichia coli E24377A]
 gi|190902308|gb|EDV62047.1| protein aegA [Escherichia coli B7A]
 gi|192927653|gb|EDV82269.1| protein aegA [Escherichia coli E22]
 gi|194414683|gb|EDX30955.1| protein aegA [Escherichia coli B171]
 gi|209913199|dbj|BAG78273.1| putative oxidoreductase [Escherichia coli SE11]
 gi|218361759|emb|CAQ99356.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli IAI1]
 gi|323159315|gb|EFZ45300.1| protein aegA [Escherichia coli E128010]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|16129426|ref|NP_415984.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|89108310|ref|AP_002090.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|170081138|ref|YP_001730458.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|188495843|ref|ZP_03003113.1| nitrate reductase, beta subunit [Escherichia coli 53638]
 gi|238900691|ref|YP_002926487.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli BW2952]
 gi|256022854|ref|ZP_05436719.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia sp. 4_1_40B]
 gi|300948124|ref|ZP_07162256.1| nitrate reductase, beta subunit [Escherichia coli MS 116-1]
 gi|300956121|ref|ZP_07168443.1| nitrate reductase, beta subunit [Escherichia coli MS 175-1]
 gi|301018321|ref|ZP_07182827.1| nitrate reductase, beta subunit [Escherichia coli MS 196-1]
 gi|307138119|ref|ZP_07497475.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli H736]
 gi|331642047|ref|ZP_08343182.1| nitrate reductase, beta subunit [Escherichia coli H736]
 gi|2507077|sp|P19318|NARY_ECOLI RecName: Full=Respiratory nitrate reductase 2 beta chain
 gi|1742386|dbj|BAA15104.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli str. K12
           substr. W3110]
 gi|1787740|gb|AAC74549.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|169888973|gb|ACB02680.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|188491042|gb|EDU66145.1| nitrate reductase, beta subunit [Escherichia coli 53638]
 gi|238861902|gb|ACR63900.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli BW2952]
 gi|260449409|gb|ACX39831.1| nitrate reductase, beta subunit [Escherichia coli DH1]
 gi|299882514|gb|EFI90725.1| nitrate reductase, beta subunit [Escherichia coli MS 196-1]
 gi|300317058|gb|EFJ66842.1| nitrate reductase, beta subunit [Escherichia coli MS 175-1]
 gi|300452311|gb|EFK15931.1| nitrate reductase, beta subunit [Escherichia coli MS 116-1]
 gi|309701733|emb|CBJ01042.1| respiratory nitrate reductase 2 beta chain [Escherichia coli ETEC
           H10407]
 gi|315136107|dbj|BAJ43266.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli DH1]
 gi|323937433|gb|EGB33710.1| nitrate reductase [Escherichia coli E1520]
 gi|331038845|gb|EGI11065.1| nitrate reductase, beta subunit [Escherichia coli H736]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|22124513|ref|NP_667936.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis KIM
           10]
 gi|45440350|ref|NP_991889.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108809930|ref|YP_653846.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
           Antiqua]
 gi|108813488|ref|YP_649255.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
           Nepal516]
 gi|145600878|ref|YP_001164954.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
           Pestoides F]
 gi|150260614|ref|ZP_01917342.1| putative oxidoreductase [Yersinia pestis CA88-4125]
 gi|165926688|ref|ZP_02222520.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936436|ref|ZP_02225004.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011879|ref|ZP_02232777.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213982|ref|ZP_02240017.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167419006|ref|ZP_02310759.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423469|ref|ZP_02315222.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167469245|ref|ZP_02333949.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis FV-1]
 gi|229836600|ref|ZP_04456766.1| putative oxidoreductase [Yersinia pestis Pestoides A]
 gi|229840209|ref|ZP_04460368.1| putative oxidoreductase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842290|ref|ZP_04462445.1| putative oxidoreductase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903972|ref|ZP_04519085.1| putative oxidoreductase [Yersinia pestis Nepal516]
 gi|270489042|ref|ZP_06206116.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis KIM
           D27]
 gi|294502454|ref|YP_003566516.1| oxidoreductase, Fe-S subunit [Yersinia pestis Z176003]
 gi|21957308|gb|AAM84187.1|AE013662_1 putative oxidoreductase, Fe-S subunit [Yersinia pestis KIM 10]
 gi|45435206|gb|AAS60766.1| putative oxidoreductase, Fe-S subunit [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777136|gb|ABG19655.1| oxidoreductase [Yersinia pestis Nepal516]
 gi|108781843|gb|ABG15901.1| putative oxidoreductase [Yersinia pestis Antiqua]
 gi|145212574|gb|ABP41981.1| oxidoreductase [Yersinia pestis Pestoides F]
 gi|149290022|gb|EDM40099.1| putative oxidoreductase [Yersinia pestis CA88-4125]
 gi|165915552|gb|EDR34161.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921311|gb|EDR38535.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989238|gb|EDR41539.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204777|gb|EDR49257.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963000|gb|EDR59021.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167057639|gb|EDR67385.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229679742|gb|EEO75845.1| putative oxidoreductase [Yersinia pestis Nepal516]
 gi|229690600|gb|EEO82654.1| putative oxidoreductase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696575|gb|EEO86622.1| putative oxidoreductase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706284|gb|EEO92292.1| putative oxidoreductase [Yersinia pestis Pestoides A]
 gi|262360485|gb|ACY57206.1| oxidoreductase, Fe-S subunit [Yersinia pestis D106004]
 gi|262364431|gb|ACY60988.1| oxidoreductase, Fe-S subunit [Yersinia pestis D182038]
 gi|270337546|gb|EFA48323.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis KIM
           D27]
 gi|294352913|gb|ADE63254.1| oxidoreductase, Fe-S subunit [Yersinia pestis Z176003]
 gi|320013793|gb|ADV97364.1| putative oxidoreductase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 671

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE   
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNRVQVIQEKCIGCKTCMIACPFGMMTVVTETVQ 110


>gi|333001614|gb|EGK21182.1| hydrogenase-4 component A [Shigella flexneri VA-6]
          Length = 205

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
 gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
          Length = 624

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C  +CPV     E  +   I   +CI CG C   CP  AI
Sbjct: 571 IDPEACKGCSK--CSRICPVGAISGEIRHPFTIDTQKCIKCGACIANCPFHAI 621


>gi|300922185|ref|ZP_07138322.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300421500|gb|EFK04811.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
          Length = 218

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|224539806|ref|ZP_03680345.1| hypothetical protein BACCELL_04716 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518552|gb|EEF87657.1| hypothetical protein BACCELL_04716 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 373

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + TE+CI C    CV+ C  D  +    +   I   +C+ CG C   C  D      E  
Sbjct: 191 IDTESCIGCN--ICVKHCAHDAVHLNAGHKAEIDYAKCVGCGQCVALCQYDGAIMGDEDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N + A     +   K 
Sbjct: 249 SER---LNYKIAEYSLAVVKDKP 268


>gi|218695006|ref|YP_002402673.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli 55989]
 gi|218351738|emb|CAU97454.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli 55989]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|212224463|ref|YP_002307699.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
 gi|212009420|gb|ACJ16802.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
          Length = 648

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 20/57 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  CK       CP   +        + P  C  CG C   CP DA +   E
Sbjct: 589 VNEEKCTGCKICINAYGCPAIYWDAESGKAKVDPLMCWGCGGCAQVCPFDAFEKVRE 645


>gi|170768158|ref|ZP_02902611.1| nitrate reductase, beta subunit [Escherichia albertii TW07627]
 gi|170122924|gb|EDS91855.1| nitrate reductase, beta subunit [Escherichia albertii TW07627]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|160875340|ref|YP_001554656.1| dimethylsulfoxide reductase, chain B [Shewanella baltica OS195]
 gi|160860862|gb|ABX49396.1| dimethylsulfoxide reductase, chain B [Shewanella baltica OS195]
 gi|315267535|gb|ADT94388.1| dimethylsulfoxide reductase, chain B [Shewanella baltica OS678]
          Length = 225

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y  + +C  C    CV+ CP    ++   +  + +    CI C  C   CP DA + D 
Sbjct: 78  AYYTSISCNHCSEPVCVKACPTGAMHKRKEDGLVLVEESLCIGCQSCSRACPYDAPQIDR 137

Query: 60  EPGLELWLK-INSEYATQWPNITTKKESLP--SAAKMDGVKQKY---EKYFSPNPGG 110
           +  +           A     I  +   L       M+ +++KY   + +F+P P  
Sbjct: 138 DRKVMTKCDGCYDRLAEGKKPICVEGCPLRALDFDTMENLRKKYGNGDGHFAPLPSQ 194


>gi|86748357|ref|YP_484853.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris HaA2]
 gi|86571385|gb|ABD05942.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris HaA2]
          Length = 607

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VVT  C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 544 VVTSQCTAC--QSCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 601

Query: 59  TEP 61
           T P
Sbjct: 602 TPP 604


>gi|82776915|ref|YP_403264.1| cryptic nitrate reductase 2, beta subunit [Shigella dysenteriae
           Sd197]
 gi|309788665|ref|ZP_07683265.1| nitrate reductase, beta subunit [Shigella dysenteriae 1617]
 gi|81241063|gb|ABB61773.1| cryptic nitrate reductase 2, beta subunit [Shigella dysenteriae
           Sd197]
 gi|308923487|gb|EFP68994.1| nitrate reductase, beta subunit [Shigella dysenteriae 1617]
          Length = 507

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 169 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 227

Query: 59  TE 60
            +
Sbjct: 228 WK 229


>gi|74313007|ref|YP_311426.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|301329002|ref|ZP_07222029.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|73856484|gb|AAZ89191.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|300844636|gb|EFK72396.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
          Length = 218

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|34557166|ref|NP_906981.1| molybdopterin oxidoreductase [Wolinella succinogenes DSM 1740]
 gi|34482882|emb|CAE09881.1| MOLYBDOPTERIN OXIDOREDUCTASE [Wolinella succinogenes]
          Length = 232

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    CV  CP    Y+ +       + D+CI C  C    P   I  +++     W
Sbjct: 59  CNHCDDAPCVRACPTGAMYKDKESGMTLHNADKCIGCKSCMLADPYHVIYYNSKQPHYKW 118


>gi|126176322|ref|YP_001052471.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|153002606|ref|YP_001368287.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160877327|ref|YP_001556643.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|304412797|ref|ZP_07394399.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307461|ref|ZP_07587196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|125999527|gb|ABN63602.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
 gi|151367224|gb|ABS10224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160862849|gb|ABX51383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|304348877|gb|EFM13293.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910249|gb|EFN40682.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|315269532|gb|ADT96385.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 198

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|326623314|gb|EGE29659.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 506

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 168 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 226

Query: 59  TE 60
            +
Sbjct: 227 WK 228


>gi|301023818|ref|ZP_07187553.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           196-1]
 gi|312973299|ref|ZP_07787471.1| protein aegA [Escherichia coli 1827-70]
 gi|299880691|gb|EFI88902.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           196-1]
 gi|310331894|gb|EFP99129.1| protein aegA [Escherichia coli 1827-70]
          Length = 654

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 51  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 103


>gi|295100040|emb|CBK89129.1| Uncharacterized Fe-S center protein [Eubacterium cylindroides
           T2-87]
          Length = 376

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +V  E C  CK   C+  C  +   F E    + I    C+ CG C   C  DAI  + 
Sbjct: 190 PHVDPEKCRGCKL--CLRECANNGLQFDEEAKKMTIDSKNCVGCGRCVGACNFDAISFNN 247

Query: 60  EPGLELWLKINSEYATQWPNITTKKE 85
           +   E+   +N   A     +   +E
Sbjct: 248 DHANEI---LNCRMAEYTKAVVDGRE 270


>gi|288932026|ref|YP_003436086.1| ferredoxin-dependent glutamate synthase [Ferroglobus placidus DSM
          10642]
 gi|288894274|gb|ADC65811.1| ferredoxin-dependent glutamate synthase [Ferroglobus placidus DSM
          10642]
          Length = 479

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 1  MTYVVT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIK 56
          M + ++   + CI C    CV  CP +   E +    +     C+ CG C   CP  AI+
Sbjct: 1  MVFEISIDRDRCIKCL--RCVRYCPTEALGEEDKMPVVKKQTACVGCGNCVDVCPAYAIQ 58


>gi|256370644|ref|YP_003108469.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Sulcia muelleri SMDSEM]
 gi|256009436|gb|ACU52796.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Sulcia muelleri SMDSEM]
          Length = 983

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C +  C  VCPV     G+     +  + CI    C   CP    + +       +
Sbjct: 805 CQHCNNAPCETVCPVGATTHGKQGQNMMTYNRCIGTRYCANNCPYKVRRFNWFNYSNKF 863


>gi|255502227|gb|ACU11593.1| HydII [Thermoanaerobacterium saccharolyticum]
          Length = 436

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C  C  T+C++ CP +     +    I  ++CIDCG C   CP  A    T+ 
Sbjct: 11 DRCKGC--TNCIKRCPTEAIRVRDGKAKIIKEKCIDCGECVRVCPYHAKVVVTDD 63



 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDC 25
          ++ E CI C   +CV VCP   
Sbjct: 37 IIKEKCIDC--GECVRVCPYHA 56


>gi|238059197|ref|ZP_04603906.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
 gi|237881008|gb|EEP69836.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
          Length = 294

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I      
Sbjct: 114 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCIPACPYGVIDQRRGD 170


>gi|218700924|ref|YP_002408553.1| putative oxidoreductase [Escherichia coli IAI39]
 gi|218370910|emb|CAR18729.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli IAI39]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|170729134|ref|YP_001763160.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814481|gb|ACA89065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 560

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C    C+  CP D     +  + I P  C   G C   CP  AI  D     
Sbjct: 201 GCN--RCLNFCPADAIQSIDKMIEIDPYLCHGAGSCTNACPTGAISYDLPTPQ 251



 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V T+ C LC    CV  CP     +G +  A+H  E  C+ CG+CE  CP  AI
Sbjct: 425 VNTQACTLCL--SCVSTCPTQALTDGGDKPALHFVEQDCVQCGLCESACPEKAI 476


>gi|330445947|ref|ZP_08309599.1| formate dehydrogenase iron-sulfur subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490138|dbj|GAA04096.1| formate dehydrogenase iron-sulfur subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 205

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSHTEDGIVQHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFAE 114


>gi|327400436|ref|YP_004341275.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327315944|gb|AEA46560.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 636

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  E C  CK   C+ +CP       E      I    C  CG+C P CPV AIK     
Sbjct: 562 IDGERCSGCKL--CIALCPYRAISYDEERGVCVIDETFCKGCGICVPACPVGAIKARHYT 619

Query: 62  GLELWLKI 69
             +++ +I
Sbjct: 620 TEQIFAEI 627



 Score = 40.7 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 23/78 (29%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDEC---I 41
           YV  + C+ C    C E CPV    + E  +                   I  + C    
Sbjct: 236 YVDADKCVGC--GMCTEACPVRVANDYEYGMKERGAIYLPYPGVLPNVPVIDRENCLYTR 293

Query: 42  DCGVCEPECPVDAIKPDT 59
            C  C   C  +AI  + 
Sbjct: 294 GCQKCIESCAFEAINFED 311


>gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
 gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
          Length = 595

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y +  E CI C  T C   CPV     E +    I    CI CGVC   C   A++  
Sbjct: 539 SYTINAEKCIGC--TACARKCPVAAISGERKQVHVIDQSICIKCGVCMETCKFGAVEIH 595


>gi|323967911|gb|EGB63323.1| glutamate synthase [Escherichia coli M863]
 gi|327252117|gb|EGE63789.1| protein aegA [Escherichia coli STEC_7v]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|323704276|ref|ZP_08115855.1| Fe-S cluster domain protein [Thermoanaerobacterium xylanolyticum
          LX-11]
 gi|323536342|gb|EGB26114.1| Fe-S cluster domain protein [Thermoanaerobacterium xylanolyticum
          LX-11]
          Length = 436

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C  C  T+C++ CP +     +    I  ++CIDCG C   CP  A    T+ 
Sbjct: 11 DRCKGC--TNCIKRCPTEAIRVRDGKAKIIKEKCIDCGECVRVCPYHAKVVVTDD 63



 Score = 33.4 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDC 25
          ++ E CI C   +CV VCP   
Sbjct: 37 IIKEKCIDC--GECVRVCPYHA 56


>gi|320180448|gb|EFW55379.1| putative oxidoreductase Fe-S binding subunit [Shigella boydii
          ATCC 9905]
          Length = 606

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 3  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 55


>gi|331684116|ref|ZP_08384712.1| protein AegA [Escherichia coli H299]
 gi|331079068|gb|EGI50270.1| protein AegA [Escherichia coli H299]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|331673924|ref|ZP_08374687.1| protein AegA [Escherichia coli TA280]
 gi|331069197|gb|EGI40589.1| protein AegA [Escherichia coli TA280]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|331648121|ref|ZP_08349211.1| protein AegA [Escherichia coli M605]
 gi|331042981|gb|EGI15121.1| protein AegA [Escherichia coli M605]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|308069433|ref|YP_003871038.1| Electron transport protein hydN [Paenibacillus polymyxa E681]
 gi|305858712|gb|ADM70500.1| Electron transport protein hydN [Paenibacillus polymyxa E681]
          Length = 196

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C   CP       +  + I+ + CI C  C   CP  AI    E  
Sbjct: 59  CRHCEDAPCANACPNGSITNADGCILINSESCIGCKTCMIACPYGAITMVPEYR 112


>gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
 gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
          Length = 595

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +++ + CI C    C   CPV     E      I  D CI CG C   C  DA+ 
Sbjct: 541 HILADKCIGC--GVCARKCPVHAINGERRQLHEIDHDICIKCGECYKACKFDAVY 593


>gi|301164623|emb|CBW24182.1| putative iron hydrogenase [Bacteroides fragilis 638R]
          Length = 489

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C   CP D     +N    I  D CI CG C   CP  AI     P
Sbjct: 114 YEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIPVP 173

Query: 62  GLEL 65
             E 
Sbjct: 174 CEEA 177



 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C E CPV    + EN +  I   +CI CG C  
Sbjct: 147 IDHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|293415730|ref|ZP_06658373.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
 gi|291433378|gb|EFF06357.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|293405917|ref|ZP_06649909.1| hydrogenase-4 component A [Escherichia coli FVEC1412]
 gi|298381665|ref|ZP_06991264.1| hydrogenase-4 component A [Escherichia coli FVEC1302]
 gi|300897640|ref|ZP_07116044.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|291428125|gb|EFF01152.1| hydrogenase-4 component A [Escherichia coli FVEC1412]
 gi|298279107|gb|EFI20621.1| hydrogenase-4 component A [Escherichia coli FVEC1302]
 gi|300358616|gb|EFJ74486.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
          Length = 218

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|284922413|emb|CBG35500.1| oxidoreductase [Escherichia coli 042]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|326315449|ref|YP_004233121.1| nitrate reductase subunit beta [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372285|gb|ADX44554.1| nitrate reductase, beta subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 507

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|218135337|ref|ZP_03464141.1| hypothetical protein BACPEC_03242 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990722|gb|EEC56733.1| hypothetical protein BACPEC_03242 [Bacteroides pectinophilus ATCC
          43243]
          Length = 56

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M ++++++C+ C    CV  CPV+   EG+  + I  D CIDCG CE  CPV A + +
Sbjct: 1  MAHIISDDCVSC--GACVAECPVNAISEGDGKMVIDADTCIDCGACEGVCPVGAPQAE 56


>gi|190348547|gb|EDK41017.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 233

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 131 EERCIACKL--CEAICPAQAITIEAEERADGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 188

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N EYAT+     +  K++ L +  K +  
Sbjct: 189 VESP----------NVEYATETREELLYNKEKLLENGDKWEQE 221


>gi|161502316|ref|YP_001569428.1| hypothetical protein SARI_00348 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863663|gb|ABX20286.1| hypothetical protein SARI_00348 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 209

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLND 130

Query: 60  EPGLE 64
           + G  
Sbjct: 131 QTGQM 135


>gi|170726979|ref|YP_001761005.1| nitrate reductase subunit beta [Shewanella woodyi ATCC 51908]
 gi|169812326|gb|ACA86910.1| nitrate reductase, beta subunit [Shewanella woodyi ATCC 51908]
          Length = 512

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|46199706|ref|YP_005373.1| anaerobic dimethyl sulfoxide reductase chain B [Thermus
           thermophilus HB27]
 gi|46197332|gb|AAS81746.1| anaerobic dimethyl sulfoxide reductase chain B [Thermus
           thermophilus HB27]
          Length = 775

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C  VCPV         L  +  + C+    C   CP  A + +  P  E ++
Sbjct: 591 CQHCEKAPCEAVCPVAATEHSPEGLNLMVYNRCVGTKYCSANCPYKARRFNFFPYAEAFI 650


>gi|53715176|ref|YP_101168.1| putative hydrogenase [Bacteroides fragilis YCH46]
 gi|253566311|ref|ZP_04843765.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265767004|ref|ZP_06094833.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52218041|dbj|BAD50634.1| putative hydrogenase [Bacteroides fragilis YCH46]
 gi|251945415|gb|EES85853.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253381|gb|EEZ24857.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 489

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C   CP D     +N    I  D CI CG C   CP  AI     P
Sbjct: 114 YEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIPVP 173

Query: 62  GLEL 65
             E 
Sbjct: 174 CEEA 177



 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C E CPV    + EN +  I   +CI CG C  
Sbjct: 147 IDHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|86140241|ref|ZP_01058802.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. MED193]
 gi|85823044|gb|EAQ43258.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. MED193]
          Length = 197

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
            C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A + 
Sbjct: 54  ACMHCSDAPCMAVCPVDCFYQTADGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|320176287|gb|EFW51348.1| putative oxidoreductase Fe-S binding subunit [Shigella
          dysenteriae CDC 74-1112]
          Length = 606

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 3  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 55


>gi|331664022|ref|ZP_08364932.1| protein AegA [Escherichia coli TA143]
 gi|331059821|gb|EGI31798.1| protein AegA [Escherichia coli TA143]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|302387715|ref|YP_003823537.1| Fe-S cluster domain protein [Clostridium saccharolyticum WM1]
 gi|302198343|gb|ADL05914.1| Fe-S cluster domain protein [Clostridium saccharolyticum WM1]
          Length = 470

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            E C+ C +  C++ CP            I+   CIDCG C   CP  A  
Sbjct: 11 DEELCMGCIN--CIKRCPTQAIRVRNGKAQINSKFCIDCGECIRVCPHHAKH 60


>gi|301644075|ref|ZP_07244089.1| nitrate reductase, beta subunit [Escherichia coli MS 146-1]
 gi|301077574|gb|EFK92380.1| nitrate reductase, beta subunit [Escherichia coli MS 146-1]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|283785286|ref|YP_003365151.1| respiratory nitrate reductase 2 beta chain [Citrobacter rodentium
           ICC168]
 gi|282948740|emb|CBG88334.1| respiratory nitrate reductase 2 beta chain [Citrobacter rodentium
           ICC168]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|255011300|ref|ZP_05283426.1| putative hydrogenase [Bacteroides fragilis 3_1_12]
 gi|313149111|ref|ZP_07811304.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137878|gb|EFR55238.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 489

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D CI CG C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIPVP 173

Query: 62  GLEL 65
             E 
Sbjct: 174 CEEA 177



 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C E CPV    + EN +  I  ++CI CG C  
Sbjct: 147 IDHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDENKCIYCGKCLN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|256830011|ref|YP_003158739.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579187|gb|ACU90323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 185

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
            C  C++  C+ VCPV+ + + E+ + +H  E CI CG C   CP  A
Sbjct: 58  ACNHCENPTCLNVCPVEAYTKREDGVVVHHQEKCIGCGNCIRSCPYGA 105


>gi|218260395|ref|ZP_03475734.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224549|gb|EEC97199.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
          Length = 184

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C  C  T C  +CPV+     +     I P  CI CG C   C   AI   
Sbjct: 130 FINPEKCKGC--TLCARMCPVNAITGDKKVPHVIDPQTCIRCGSCIERCKFGAIYVH 184


>gi|94969971|ref|YP_592019.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552021|gb|ABF41945.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 255

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C+   C   CPV    +          D+CI C  C   CP    + + 
Sbjct: 58  CMHCQDPTCASACPVGALQKNSFGPVTYDADKCIGCRYCMVACPYSVPRYEW 109


>gi|42109|emb|CAA34965.1| narY product [Escherichia coli]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|330829846|ref|YP_004392798.1| hydrogenase 2 protein [Aeromonas veronii B565]
 gi|328804982|gb|AEB50181.1| Hydrogenase 2 protein [Aeromonas veronii B565]
          Length = 348

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   P  C  C  C   CP D  K D +
Sbjct: 109 IKKQCMHCVDPNCVSVCPVQALKKDPKTGIVHYDPSVCTGCRYCMVGCPFDVPKYDYD 166


>gi|299132106|ref|ZP_07025301.1| nitrate reductase, beta subunit [Afipia sp. 1NLS2]
 gi|298592243|gb|EFI52443.1| nitrate reductase, beta subunit [Afipia sp. 1NLS2]
          Length = 506

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|262276174|ref|ZP_06053983.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886]
 gi|262219982|gb|EEY71298.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886]
          Length = 570

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 11/72 (15%)

Query: 5   VTENCIL-------CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            TE C         C  T C++ CP +        + I+P  C   G C   CP +AI  
Sbjct: 197 DTERCAHASRGLEGC--TRCIDACPAEALSTINQTITINPYLCQGIGSCATVCPTEAISY 254

Query: 58  D--TEPGLELWL 67
                   + ++
Sbjct: 255 ALPDPENTQHFV 266



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T +C LC    CV VCP            +     +C+ CG+CE  CP   I  +
Sbjct: 433 VKTHDCTLCMG--CVAVCPTGALSSIGSRPGITFREQDCVQCGLCESSCPESVITLE 487


>gi|257064912|ref|YP_003144584.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792565|gb|ACV23235.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           T  C  C +  CVEVCP    ++      + I+ D+CI CG C   CP D
Sbjct: 64  TMACQHCSNPACVEVCPTGASWKDTETGLVLINSDDCIGCGACLNACPYD 113


>gi|254457148|ref|ZP_05070576.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207085940|gb|EDZ63224.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 202

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           M + ++  C+ C    C +VCPVDCFY  E+ + +H  E CI C  C   CP  A
Sbjct: 53  MEFSLSVACMHCTDAPCEQVCPVDCFYIREDGIVLHNKEVCIGCAYCLYACPFGA 107


>gi|74312004|ref|YP_310423.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|73855481|gb|AAZ88188.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
          Length = 239

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQENKYY 213


>gi|218927545|ref|YP_002345420.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis CO92]
 gi|115346156|emb|CAL19024.1| putative oxidoreductase [Yersinia pestis CO92]
          Length = 671

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE   
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNRVQVIQEKCIGCKTCMIACPFGMMTVVTETVQ 110


>gi|148259940|ref|YP_001234067.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
 gi|326403106|ref|YP_004283187.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
 gi|146401621|gb|ABQ30148.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
 gi|325049967|dbj|BAJ80305.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
          Length = 163

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                P  E   +   E       +  K+  L +  + +    K  +  +P
Sbjct: 119 V--EGPNFEFATETREEL------MYDKERLLANGDRWESELAKRLELDAP 161


>gi|332143236|ref|YP_004428974.1| nitrate reductase, beta subunit [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553258|gb|AEA99976.1| nitrate reductase, beta subunit [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 510

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCINPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|260654894|ref|ZP_05860382.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Jonquetella anthropi E3_33 E1]
 gi|260630396|gb|EEX48590.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Jonquetella anthropi E3_33 E1]
          Length = 621

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C+       CP   +      +++    C+ CGVC   CP  AI+   E   
Sbjct: 561 VDKDTCIGCRICINQFNCPGLAYSAETKKVSVDERYCVSCGVCTAVCPHGAIRRRDEGRD 620


>gi|257063244|ref|YP_003142916.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790897|gb|ACV21567.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  C  VCPV    + E+ + I   + CI C  C   CP +      EP    
Sbjct: 64  ACQHCENPACEAVCPVGATQKLEDGVVIVDGELCIGCQSCIQACPYNVRTYLAEPPAWD 122


>gi|223985317|ref|ZP_03635393.1| hypothetical protein HOLDEFILI_02699 [Holdemania filiformis DSM
          12042]
 gi|223962718|gb|EEF67154.1| hypothetical protein HOLDEFILI_02699 [Holdemania filiformis DSM
          12042]
          Length = 563

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 13/95 (13%)

Query: 1  MTYV--VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+Y+     NC  C    CV VCP        +   I  DECI CG C   CP  A K  
Sbjct: 1  MSYIQLSEANCRNCL--RCVRVCPTKAMTYQNHQPTILEDECILCGKCYAICPHSAKKVH 58

Query: 59 TE-PGLELWLK--------INSEYATQWPNITTKK 84
          ++   +  W+         I   +A+ WP+    K
Sbjct: 59 SDGDQVRAWIAQGQPLALSIAPSFASVWPDYPRLK 93


>gi|215486846|ref|YP_002329277.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|215264918|emb|CAS09304.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O127:H6
           str. E2348/69]
          Length = 239

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 35.7 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIK--PD 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQENKYY 213


>gi|254471119|ref|ZP_05084522.1| nitrate reductase, beta subunit [Pseudovibrio sp. JE062]
 gi|211960261|gb|EEA95458.1| nitrate reductase, beta subunit [Pseudovibrio sp. JE062]
          Length = 513

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|91790423|ref|YP_551375.1| respiratory nitrate reductase subunit beta [Polaromonas sp. JS666]
 gi|91699648|gb|ABE46477.1| respiratory nitrate reductase beta subunit [Polaromonas sp. JS666]
          Length = 510

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 179 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 237

Query: 59  TE 60
            +
Sbjct: 238 WK 239


>gi|42526786|ref|NP_971884.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           ATCC 35405]
 gi|41817101|gb|AAS11795.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           ATCC 35405]
          Length = 493

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++T  C  C    C+  CP            I  ++CI+CG+C   CP  A+
Sbjct: 112 YMITNACQACVARPCMMNCPKTAIAISGGRARIDEEKCINCGICLKNCPYHAV 164



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEP 48
           +  E CI C                  C E CPV    + EN    I   +CI CG C  
Sbjct: 144 IDEEKCINCGICLKNCPYHAVIKIPVPCEEACPVGAISKDENGKERIDYHKCIFCGNCMR 203

Query: 49  ECPVDAIK 56
           ECP  A+ 
Sbjct: 204 ECPFGAMM 211


>gi|16761444|ref|NP_457061.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140859|ref|NP_804201.1| anaerobic reductase subunit [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213425326|ref|ZP_03358076.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580857|ref|ZP_03362683.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213612662|ref|ZP_03370488.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857321|ref|ZP_03384292.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25285325|pir||AH0822 probable anaerobic reductase component STY2774 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503744|emb|CAD02732.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136484|gb|AAO68050.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 209

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|322613726|gb|EFY10665.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619531|gb|EFY16407.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625036|gb|EFY21865.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629521|gb|EFY26297.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634048|gb|EFY30785.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635514|gb|EFY32225.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639810|gb|EFY36489.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644432|gb|EFY40973.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648577|gb|EFY45026.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322658250|gb|EFY54516.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664251|gb|EFY60448.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669418|gb|EFY65567.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673145|gb|EFY69251.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676537|gb|EFY72605.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683287|gb|EFY79301.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685827|gb|EFY81820.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194770|gb|EFZ79958.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199542|gb|EFZ84633.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204683|gb|EFZ89681.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208131|gb|EFZ93076.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210938|gb|EFZ95800.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217013|gb|EGA01735.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221811|gb|EGA06215.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323229299|gb|EGA13423.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235386|gb|EGA19470.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237428|gb|EGA21491.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245182|gb|EGA29183.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248885|gb|EGA32811.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253172|gb|EGA37004.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255406|gb|EGA39174.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262035|gb|EGA45600.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266346|gb|EGA49834.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269823|gb|EGA53273.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 209

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|320175671|gb|EFW50760.1| Hydrogenase-2 operon protein hybA precursor [Shigella dysenteriae
           CDC 74-1112]
          Length = 328

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVYYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|253999507|ref|YP_003051570.1| RnfABCDGE type electron transport complex subunit B [Methylovorus
           sp. SIP3-4]
 gi|253986186|gb|ACT51043.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus
           sp. SIP3-4]
          Length = 299

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I     
Sbjct: 113 AFIDEQTCIGC--TLCIQACPVDAILGASKQMHTVIADECTGCELCIAPCPVDCITMQPP 170

Query: 61  PGLE 64
           P  +
Sbjct: 171 PVTQ 174



 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           M  V+ + C  C+   C+  CPVDC       +   P  
Sbjct: 142 MHTVIADECTGCEL--CIAPCPVDCITMQPPPVTQSPRW 178


>gi|227496205|ref|ZP_03926509.1| formate dehydrogenase beta subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834258|gb|EEH66641.1| formate dehydrogenase beta subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 348

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 152 SDVCKHCTHAGCLDVCPTGALFRSEFGSVVVQADVCNGCGYCVAACPFGVI 202


>gi|218264316|ref|ZP_03478173.1| hypothetical protein PRABACTJOHN_03864 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222117|gb|EEC94767.1| hypothetical protein PRABACTJOHN_03864 [Parabacteroides johnsonii
           DSM 18315]
          Length = 481

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D CI CG C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAEIDHDTCISCGKCHQNCPYHAIVYIPIP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 15/84 (17%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C EVCPV    + E  +  I   +CI CG C  
Sbjct: 147 IDHDTCISCGKCHQNCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVN 206

Query: 49  ECPVDAIKPDTEPGLELWLKINSE 72
            CP  AI   ++    L    N E
Sbjct: 207 ACPFGAIFEISQVFDILQRLRNKE 230


>gi|124266898|ref|YP_001020902.1| respiratory nitrate reductase subunit beta [Methylibium
           petroleiphilum PM1]
 gi|124259673|gb|ABM94667.1| respiratory nitrate reductase beta subunit [Methylibium
           petroleiphilum PM1]
          Length = 510

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 179 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 237

Query: 59  TE 60
            +
Sbjct: 238 WK 239


>gi|116695680|ref|YP_841256.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia
          eutropha H16]
 gi|113530179|emb|CAJ96526.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia
          eutropha H16]
          Length = 383

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          CI C    C E CPV       N   +  + C  C  C P CP  AI     P  + +
Sbjct: 19 CIRCN--SCEESCPVGAITHDHNNYVVDVERCNHCRACLPPCPTGAINH-WYPVQQPY 73


>gi|77919712|ref|YP_357527.1| indolepyruvate oxidoreductase subunit alpha [Pelobacter
           carbinolicus DSM 2380]
 gi|77545795|gb|ABA89357.1| indolepyruvate oxidoreductase, alpha subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 613

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 1   MTYVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           MT  V   C  C++  C++   CP   + E    + I  D C+ CGVCE  CP  AI   
Sbjct: 554 MT--VGAECNGCRY--CIKAFECPALVYDEPSGRVCIDNDLCVGCGVCERVCPRGAIHNQ 609

Query: 59  TE 60
            E
Sbjct: 610 GE 611


>gi|89092832|ref|ZP_01165784.1| formate dehydrogenase, iron-sulfur subunit [Oceanospirillum sp.
           MED92]
 gi|89082857|gb|EAR62077.1| formate dehydrogenase, iron-sulfur subunit [Oceanospirillum sp.
           MED92]
          Length = 201

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+ ++ +   + D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYQTDDGIVLHNKDLCIGCGYCLYACPFGA 101


>gi|303239632|ref|ZP_07326157.1| hydrogenase large subunit domain protein [Acetivibrio
          cellulolyticus CD2]
 gi|302592803|gb|EFL62526.1| hydrogenase large subunit domain protein [Acetivibrio
          cellulolyticus CD2]
          Length = 446

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 11 DEEKCKGC--TNCIKRCPTEAIRVRKGKARIIAERCIDCGECIRVCPYHA 58


>gi|269967076|ref|ZP_06181144.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           alginolyticus 40B]
 gi|269828335|gb|EEZ82601.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           alginolyticus 40B]
          Length = 249

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 173


>gi|238025084|ref|YP_002909316.1| nitrate reductase subunit beta [Burkholderia glumae BGR1]
 gi|237879749|gb|ACR32081.1| Nitrate reductase, beta subunit [Burkholderia glumae BGR1]
          Length = 512

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGVVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|254434139|ref|ZP_05047647.1| 4Fe-4S binding domain protein [Nitrosococcus oceani AFC27]
 gi|207090472|gb|EDZ67743.1| 4Fe-4S binding domain protein [Nitrosococcus oceani AFC27]
          Length = 1006

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 12/86 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           TY     C+ C++  C  VCP          L +   + CI    C   C          
Sbjct: 830 TYFQPVLCMHCENAPCELVCPTAATVHDSEGLNLQVYNRCIGTRFCSNNC---------P 880

Query: 61  PGLELWLKINSEYATQWPNITTKKES 86
             +  +  +  EYA + P++  +K  
Sbjct: 881 YKVRRFNFL--EYAKETPSLVAQKNP 904


>gi|189485599|ref|YP_001956540.1| electron transfer flavoprotein alpha subunit [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
 gi|170287558|dbj|BAG14079.1| electron transfer flavoprotein alpha subunit [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
          Length = 409

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVDAI 55
          V T+ C+ CK   C  VCP +     E            I  ++C  CG C   C  +AI
Sbjct: 7  VFTDKCVGCKM--CENVCPFNAISIVERLEYPKKFKLAVIDLNKCTYCGSCVQTCKFNAI 64


>gi|168243309|ref|ZP_02668241.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168466719|ref|ZP_02700573.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194443941|ref|YP_002041787.1| dimethylsulfoxide reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450531|ref|YP_002046587.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194402604|gb|ACF62826.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408835|gb|ACF69054.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195630698|gb|EDX49290.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205337679|gb|EDZ24443.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 209

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|163731475|ref|ZP_02138922.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           litoralis Och 149]
 gi|161394929|gb|EDQ19251.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           litoralis Och 149]
          Length = 678

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++VCP        + +AI P  C  CG C   CP  AI  D  P   ++ ++
Sbjct: 307 TKCLDVCPTGAITSAGDHVAIDPLICAGCGACSALCPSGAITYDAPPVGSVFSRL 361



 Score = 40.7 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP            L    D C+ CG+C   CP  AI
Sbjct: 525 VDTDACTLCL--SCVSLCPSGALGDNPDNPQLRFQEDACLQCGLCSNICPEQAI 576


>gi|163749862|ref|ZP_02157107.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99]
 gi|161330376|gb|EDQ01355.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99]
          Length = 561

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C    C+  CP D        + I P  C   G C   CP  AI  D     
Sbjct: 202 GCN--RCLNFCPADAIQSINKMIEIDPYLCHGAGSCTNACPTGAISYDLPTPQ 252



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V T++C LC    CV  CP     +G +  A++  E  C+ CG+CE  CP +AI
Sbjct: 426 VNTDSCTLCL--SCVSTCPTQALTDGGDKPALNFLEQDCVQCGLCEKACPENAI 477


>gi|77164744|ref|YP_343269.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Nitrosococcus oceani ATCC 19707]
 gi|76883058|gb|ABA57739.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Nitrosococcus oceani ATCC 19707]
          Length = 993

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 12/86 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           TY     C+ C++  C  VCP          L +   + CI    C   C          
Sbjct: 817 TYFQPVLCMHCENAPCELVCPTAATVHDSEGLNLQVYNRCIGTRFCSNNC---------P 867

Query: 61  PGLELWLKINSEYATQWPNITTKKES 86
             +  +  +  EYA + P++  +K  
Sbjct: 868 YKVRRFNFL--EYAKETPSLVAQKNP 891


>gi|121606648|ref|YP_983977.1| nitrate reductase subunit beta [Polaromonas naphthalenivorans CJ2]
 gi|120595617|gb|ABM39056.1| respiratory nitrate reductase beta subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 510

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 179 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 237

Query: 59  TE 60
            +
Sbjct: 238 WK 239


>gi|119776744|ref|YP_929484.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
 gi|119769244|gb|ABM01815.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
          Length = 198

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPANCFYKTDDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|114561246|ref|YP_748759.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332539|gb|ABI69921.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 198

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|331270137|ref|YP_004396629.1| transcriptional regulator [Clostridium botulinum BKT015925]
 gi|329126687|gb|AEB76632.1| transcriptional regulator [Clostridium botulinum BKT015925]
          Length = 629

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 3  YVVTENCILCKHTDCVEVCP-----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y + ENC+ C    C+  CP        F +G+N + ++ D+CI CG C   C  +A + 
Sbjct: 8  YTIEENCVGCN--QCIRYCPIFDANTAYFSKGQNKVKVNIDKCIHCGKCIDVCEHEAREY 65

Query: 58 DTE 60
            +
Sbjct: 66 HDD 68


>gi|307594911|ref|YP_003901228.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Vulcanisaeta distributa DSM 14429]
 gi|307550112|gb|ADN50177.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Vulcanisaeta distributa DSM 14429]
          Length = 616

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           YV  + C  C    C     CP     E      I P+ C+ C VC   CP +AIKP+  
Sbjct: 549 YVDLDACKAC--GICYNLIACPAIVPLE-NRKAWIDPNMCVGCSVCAQVCPYNAIKPEGN 605

Query: 59  TEPGLELWLKI 69
            +  L+ W ++
Sbjct: 606 VKDWLKKWAEM 616


>gi|307726846|ref|YP_003910059.1| nitrate reductase subunit beta [Burkholderia sp. CCGE1003]
 gi|307587371|gb|ADN60768.1| nitrate reductase, beta subunit [Burkholderia sp. CCGE1003]
          Length = 507

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|283833099|ref|ZP_06352840.1| nitrate reductase, beta subunit [Citrobacter youngae ATCC 29220]
 gi|291070719|gb|EFE08828.1| nitrate reductase, beta subunit [Citrobacter youngae ATCC 29220]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|160944511|ref|ZP_02091739.1| hypothetical protein FAEPRAM212_02024 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444293|gb|EDP21297.1| hypothetical protein FAEPRAM212_02024 [Faecalibacterium prausnitzii
           M21/2]
          Length = 217

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            + C  C+   C   CP          +  +  D+CI CG C   CP      + E
Sbjct: 121 PDTCRQCEDPACGNACPQKAITTDSRGIRVVDTDKCIGCGACHDACPWHMPTVNPE 176



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V T+ CI C    C + CP                +CI CG C   CP  A+    
Sbjct: 151 VDTDKCIGC--GACHDACPWHMPTVNPETGK--SSKCIACGACVAGCPSGALSIVD 202


>gi|24375987|ref|NP_720030.1| formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
 gi|24350986|gb|AAN57474.1|AE015883_5 formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
          Length = 198

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|219667681|ref|YP_002458116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537941|gb|ACL19680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 178

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           +C+ C    C  VCP   + + E+ L I   D+C+ CG C   CP  A K 
Sbjct: 58  SCMHCAEPQCASVCPTKAYTKREDGLVIQDHDKCVGCGYCIYACPYQAPKM 108


>gi|89897565|ref|YP_521052.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219670692|ref|YP_002461127.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89337013|dbj|BAE86608.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219540952|gb|ACL22691.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 192

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            Y ++ +C  CK   CV+ CP    + GE+       D CI C  C   CP 
Sbjct: 51  AYYLSMSCNHCKEAKCVKGCPTGAMHFGEDGTVQHDKDMCIGCKYCVWNCPY 102


>gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Clostridium thermocellum ATCC 27405]
 gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 597

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M Y +  E C  C    C   CPV     E +    I  ++CI CGVC  +CP  AI
Sbjct: 539 MHYEIDAEKCKSC--GICARQCPVKAISGEKKVPYVIDQNKCIKCGVCMEKCPFKAI 593


>gi|309784808|ref|ZP_07679441.1| protein aegA [Shigella dysenteriae 1617]
 gi|308927178|gb|EFP72652.1| protein aegA [Shigella dysenteriae 1617]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|291165527|gb|EFE27577.1| ferredoxin [Filifactor alocis ATCC 35896]
 gi|320120475|gb|ADW16160.1| hypothetical protein HMPREF0389_01715 [Filifactor alocis ATCC
          35896]
          Length = 56

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPV    +G+    I    CIDCG C   CPV A K +
Sbjct: 1  MAYKISDSCIGC--GACEGECPVGAISQGDTQYIIDASACIDCGACAGVCPVGAPKAE 56


>gi|317133139|ref|YP_004092453.1| hypothetical protein Ethha_2205 [Ethanoligenens harbinense YUAN-3]
 gi|315471118|gb|ADU27722.1| hypothetical protein Ethha_2205 [Ethanoligenens harbinense YUAN-3]
          Length = 379

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             +V   CI C    C E CP       +    I   +CI C  C   CPV AI   T
Sbjct: 317 PVIVRSKCIGC--GKCAESCPRHVIRIEQKKAHIAYTDCIRCFCCHEMCPVKAIDIHT 372


>gi|269963964|ref|ZP_06178273.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           harveyi 1DA3]
 gi|269831307|gb|EEZ85457.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           harveyi 1DA3]
          Length = 249

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 173


>gi|238784601|ref|ZP_04628607.1| Hydrogenase-2 operon protein hybA [Yersinia bercovieri ATCC 43970]
 gi|238714470|gb|EEQ06476.1| Hydrogenase-2 operon protein hybA [Yersinia bercovieri ATCC 43970]
          Length = 300

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   P+ C  C  C   CP +  K D +
Sbjct: 61  IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPNVCTGCRYCMVGCPFNVPKYDYD 118


>gi|209731956|gb|ACI66847.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAVCPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 166 VEGP----------NFEFATETHEELLYNKEKLLNNGDQWESE 198


>gi|84685011|ref|ZP_01012910.1| benzoyl-CoA oxygenase, A subunit [Maritimibacter alkaliphilus
          HTCC2654]
 gi|84666743|gb|EAQ13214.1| benzoyl-CoA oxygenase, A subunit [Rhodobacterales bacterium
          HTCC2654]
          Length = 397

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  E CI C    C   CP++     ++ + +  ++C  C  C P CP  +I        
Sbjct: 10 IDPEICIRCY--TCEMTCPIEAITHNDDNVVVDAEKCNFCMDCIPVCPTGSI-------- 59

Query: 64 ELWLKINSEYA----TQWPNITTKKESLPSAA 91
          + W  +N  Y+     +W  +  + +  PSA 
Sbjct: 60 DEWRVVNEPYSLDEQFEWTELPEQGDVEPSAE 91


>gi|114566336|ref|YP_753490.1| formate dehydrogenase iron-sulfur subunit [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337271|gb|ABI68119.1| formate dehydrogenase beta subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 266

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           C+ C    C++VCP   + + E       PD+CI C  C   CP +
Sbjct: 75  CMHCFDPACMKVCPRQAYSKTEWGATFHDPDKCIGCQYCTYACPFE 120


>gi|145218871|ref|YP_001129580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205035|gb|ABP36078.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Chlorobium phaeovibrioides DSM 265]
          Length = 252

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           T  V   C  C    C   CP    +   + +  I    C+ C  C   CP   +  +  
Sbjct: 107 TTAVPALCNHCAEPSCARACPTGSIFRRTDGIVAIDYHRCVGCRSCMQSCPYGEVSFNWS 166

Query: 61  PG 62
             
Sbjct: 167 DP 168


>gi|325969146|ref|YP_004245338.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Vulcanisaeta moutnovskia 768-28]
 gi|323708349|gb|ADY01836.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Vulcanisaeta moutnovskia 768-28]
          Length = 616

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           YV  + C  C    C     CP     E      I P+ C+ C VC   CP DAIKP+  
Sbjct: 549 YVNPDACKAC--GICYNLIACPAIVPLE-NRKAWIDPNMCVGCSVCAQVCPYDAIKPEGN 605

Query: 59  TEPGLELWLKI 69
            +  L  W ++
Sbjct: 606 VKDWLRKWAEM 616


>gi|323669543|gb|ABI30020.2| CarE [Acetobacterium woodii]
          Length = 396

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ E CI C    C + CP D          I  D C +CG C   CP +AI  +
Sbjct: 5  VIEEKCIGCSK--CQKSCPFDAITIENKIAVI-GDACTNCGTCIDVCPTEAILQE 56


>gi|293414987|ref|ZP_06657630.1| ferredoxin-like protein ydhX [Escherichia coli B185]
 gi|291432635|gb|EFF05614.1| ferredoxin-like protein ydhX [Escherichia coli B185]
          Length = 239

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 33.8 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNSVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|260893719|ref|YP_003239816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
            degensii KC4]
 gi|260865860|gb|ACX52966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
            degensii KC4]
          Length = 1016

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            V    C  C+   CV +CP +     +      I+   C  CGVC   CP  AI      
Sbjct: 946  VDPAKCSGCR--ICVNLCPYNAISFDDVNKVSVINEAVCKGCGVCAAACPSKAITMGGFT 1003

Query: 62   GLELWLKINSEYA 74
              +++ +I +  +
Sbjct: 1004 DEQIFAEIEALLS 1016



 Score = 38.0 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 24/93 (25%), Gaps = 35/93 (37%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID-- 42
           YV  E C+ C   DC   CPV    E                        I   +C+   
Sbjct: 102 YVDPEKCVAC--GDCAAKCPVKVKDEFNEGLGERKAIFIKYSQAVPAAYMIDATKCLRIL 159

Query: 43  -------------CGVCEPECPVDAIKPDTEPG 62
                        CG+C   C   AI  D    
Sbjct: 160 HAEKAKAAGKEPPCGLCAKACQRGAINFDDTEK 192


>gi|238895928|ref|YP_002920664.1| putative oxidoreductase Fe-S binding subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548246|dbj|BAH64597.1| putative oxidoreductase Fe-S subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 660

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   CV  CP D   +  + + +  ++CI C  C   CP   ++    P 
Sbjct: 56  CRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFGVMQVVVTPQ 109


>gi|171185522|ref|YP_001794441.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934734|gb|ACB39995.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 290

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  CV  CP            + +  D CI C  C   CP +A+  D
Sbjct: 54  CNHCENAPCVNSCPTGALRHNPETGIVQLDKDLCIGCRACTRACPYNAVYID 105


>gi|332797651|ref|YP_004459151.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332695386|gb|AEE94853.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidianus
           hospitalis W1]
          Length = 633

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ CK  DC   CPV       +F+        +CI  G C   CP D I      
Sbjct: 562 DPQQCLNCKTVDCATACPVGLTDMRASFIKNGEFRSMKCIGIGECVNACPYDNIMFYD-- 619

Query: 62  GLELWLKINSEYAT 75
            +  WLK   +++ 
Sbjct: 620 -VRHWLK--EKFSK 630


>gi|320528932|ref|ZP_08030024.1| nitrate reductase, beta subunit [Selenomonas artemidis F0399]
 gi|320138562|gb|EFW30452.1| nitrate reductase, beta subunit [Selenomonas artemidis F0399]
          Length = 473

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + I  D C     C P CP   I  + E     
Sbjct: 180 CNHCLNPACVAACPSGAIYKRDEDGVVLISQDGCRGWRHCVPSCPYKKIYYNWETNKAE 238


>gi|295111871|emb|CBL28621.1| Uncharacterized conserved protein [Synergistetes bacterium SGP1]
          Length = 203

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + ENCI C    C  VCP D    G  F  I    C+ CG C   CPV AI
Sbjct: 151 YHIMENCIGC--GTCQAVCPQDAISSGTPFA-IDESHCLQCGNCAENCPVKAI 200


>gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 623

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 2   TYVV--TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+V   E C  C    C  +CPV     + +    I+  +CI CG C   CP  AI
Sbjct: 566 AYIVIEKEKCKGCSK--CARICPVQAIEGKIKEPYTINQSKCIKCGACLEACPFAAI 620


>gi|255728045|ref|XP_002548948.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240133264|gb|EER32820.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 231

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 129 EERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 186

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
             +T          N EY+T      +  K++ L +  K +  
Sbjct: 187 -VETP---------NVEYSTATREELLYNKEKLLENGDKWEQE 219


>gi|241949545|ref|XP_002417495.1| NADH-ubiquinone oxidoreductase 23 subunit, mitochondrial precursor,
           putative; mitochondrial complex I, NUIM subunit,
           putative [Candida dubliniensis CD36]
 gi|223640833|emb|CAX45148.1| NADH-ubiquinone oxidoreductase 23 subunit, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 247

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 145 EERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 202

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
             +T          N EY+T      +  K++ L +  K +  
Sbjct: 203 -VETP---------NVEYSTATREELLYNKEKLLENGDKWEQE 235


>gi|168235689|ref|ZP_02660747.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736461|ref|YP_002114602.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711963|gb|ACF91184.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290997|gb|EDY30350.1| nitrate reductase 2, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVSTCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|167628658|ref|YP_001679157.1| aldo/keto reductase [Heliobacterium modesticaldum Ice1]
 gi|167591398|gb|ABZ83146.1| aldo/keto reductase [Heliobacterium modesticaldum Ice1]
          Length = 346

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + C  C    CV  CP       E  + +    C+ CG C   C    I
Sbjct: 296 IEDWCTGC--GACVPACPQGALRLEE-RVVVDQARCLLCGYCARMCRDFCI 343


>gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
          Length = 574

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  + C  C  T C   CP        +N   I  ++CI CG C  +C   AI 
Sbjct: 521 IDRDKCRGC--TLCARNCPAGAIVGSVKNPHVIDQNKCIKCGACMEKCKFGAIY 572


>gi|154491696|ref|ZP_02031322.1| hypothetical protein PARMER_01307 [Parabacteroides merdae ATCC
           43184]
 gi|154087937|gb|EDN86982.1| hypothetical protein PARMER_01307 [Parabacteroides merdae ATCC
           43184]
          Length = 481

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D CI CG C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAEIDHDTCISCGKCHQNCPYHAIVYIPIP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 15/84 (17%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C EVCPV    + E  +  I   +CI CG C  
Sbjct: 147 IDHDTCISCGKCHQNCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVN 206

Query: 49  ECPVDAIKPDTEPGLELWLKINSE 72
            CP  AI   ++    L    N E
Sbjct: 207 ACPFGAIFEISQVFDILQRLRNKE 230


>gi|157164783|ref|YP_001467446.1| cytoplasmic membrane protein [Campylobacter concisus 13826]
 gi|112800981|gb|EAT98325.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
          Length = 213

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C+   C  VCPVDCFY   + +     D CI CG C   CP  A
Sbjct: 61  ACMHCEDAPCSLVCPVDCFYIRADGIVLHDKDICIGCGYCLYACPFGA 108


>gi|308513312|ref|NP_953102.2| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           sulfurreducens PCA]
 gi|41152678|gb|AAR35429.2| indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
           [Geobacter sulfurreducens PCA]
 gi|298506164|gb|ADI84887.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sulfurreducens KN400]
          Length = 605

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++ C  C+       CP   + E    + +    C  CGVC   CP  AI
Sbjct: 550 VSDACNGCRFCTTQFECPALVYDEETKRVVVDTLVCSKCGVCVDVCPRLAI 600


>gi|52426419|ref|YP_089556.1| hydrogenase 2 protein HybA [Mannheimia succiniciproducens MBEL55E]
 gi|52308471|gb|AAU38971.1| HybA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 330

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +
Sbjct: 108 IKKQCMHCVDPNCVSVCPVQALTKNPKTGIVGYDPDICTGCRYCMVACPFDVPKYDYD 165


>gi|157157694|ref|YP_001462964.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
 gi|238900886|ref|YP_002926682.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli BW2952]
 gi|256022666|ref|ZP_05436531.1| hypothetical protein E4_04784 [Escherichia sp. 4_1_40B]
 gi|260843976|ref|YP_003221754.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O103:H2
           str. 12009]
 gi|260855495|ref|YP_003229386.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O26:H11
           str. 11368]
 gi|297516334|ref|ZP_06934720.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli OP50]
 gi|300821457|ref|ZP_07101604.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 119-7]
 gi|300930861|ref|ZP_07146230.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 187-1]
 gi|300951260|ref|ZP_07165111.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 116-1]
 gi|300958548|ref|ZP_07170680.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 175-1]
 gi|301647851|ref|ZP_07247635.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 146-1]
 gi|307138328|ref|ZP_07497684.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli H736]
 gi|331677541|ref|ZP_08378216.1| putative oxidoreductase Fe-S subunit [Escherichia coli H591]
 gi|1549282|gb|AAB47947.1| hypothetical protein [Escherichia coli str. K-12 substr. MG1655]
 gi|157079724|gb|ABV19432.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
 gi|238862104|gb|ACR64102.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli BW2952]
 gi|242377399|emb|CAQ32147.2| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           BL21(DE3)]
 gi|257754144|dbj|BAI25646.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O26:H11
           str. 11368]
 gi|257759123|dbj|BAI30620.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O103:H2
           str. 12009]
 gi|300314793|gb|EFJ64577.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 175-1]
 gi|300449475|gb|EFK13095.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 116-1]
 gi|300461277|gb|EFK24770.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 187-1]
 gi|300525960|gb|EFK47029.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 119-7]
 gi|301074041|gb|EFK88847.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 146-1]
 gi|331074001|gb|EGI45321.1| putative oxidoreductase Fe-S subunit [Escherichia coli H591]
          Length = 239

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQQNKYY 213


>gi|84514365|ref|ZP_01001729.1| formate dehydrogenase iron-sulfur subunit [Loktanella vestfoldensis
           SKA53]
 gi|84511416|gb|EAQ07869.1| formate dehydrogenase iron-sulfur subunit [Loktanella vestfoldensis
           SKA53]
          Length = 198

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY  ++ +   + D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCASVCPVDCFYTTDDAVVLHNKDTCIGCGYCSYACPFGAPQY 104


>gi|262276170|ref|ZP_06053979.1| formate dehydrogenase-O iron-sulfur subunit [Grimontia hollisae CIP
           101886]
 gi|262219978|gb|EEY71294.1| formate dehydrogenase-O iron-sulfur subunit [Grimontia hollisae CIP
           101886]
          Length = 201

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCLFACPFGA 103


>gi|260437855|ref|ZP_05791671.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292809880|gb|EFF69085.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 56

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++C+ C    C   CP      G++   I  D C+ CG CE  CPV AI
Sbjct: 1  MAYVISDSCVSC--GSCAGGCPAGAISLGDSHYEIDADTCLSCGACESACPVGAI 53


>gi|256822560|ref|YP_003146523.1| nitrate reductase subunit beta [Kangiella koreensis DSM 16069]
 gi|256796099|gb|ACV26755.1| nitrate reductase, beta subunit [Kangiella koreensis DSM 16069]
          Length = 518

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|213620710|ref|ZP_03373493.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 131

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++  C  C    CV  CP    ++   +  + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDT 118


>gi|161612711|ref|YP_001586676.1| hypothetical protein SPAB_00409 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197250854|ref|YP_002147482.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|161362075|gb|ABX65843.1| hypothetical protein SPAB_00409 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197214557|gb|ACH51954.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 209

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|158520577|ref|YP_001528447.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3]
 gi|158509403|gb|ABW66370.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3]
          Length = 589

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+ C+ C    CVE C              +   C  CG CE  CP  A+
Sbjct: 514 VTDACVGC--GTCVEFCGFGAITIENGKAVHNDQ-CRGCGRCETRCPNHAV 561


>gi|77919906|ref|YP_357721.1| Fe binding transcriptional regulator FhlA [Pelobacter
          carbinolicus DSM 2380]
 gi|77545989|gb|ABA89551.1| sigma54 specific transcriptional regulator, Fis family
          [Pelobacter carbinolicus DSM 2380]
          Length = 747

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 1  MTYV--VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M ++   T+ C  C    CV  CPV           + P  CI CG C   C   A  
Sbjct: 1  MGHIQTDTQRCRRCY--ACVRHCPVKAIRVTRQGTDLSPGRCIGCGRCLQICTQQARH 56


>gi|313895529|ref|ZP_07829085.1| nitrate reductase, beta subunit [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975655|gb|EFR41114.1| nitrate reductase, beta subunit [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 473

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + I  D C     C P CP   I  + E     
Sbjct: 180 CNHCLNPACVAACPSGAIYKRDEDGVVLISQDGCRGWRHCVPSCPYKKIYYNWETNKAE 238


>gi|313887911|ref|ZP_07821590.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846077|gb|EFR33459.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 305

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           CI C    C + CP D  +   N  +I  D+CI+CG+C  +CP  AI  +    
Sbjct: 217 CIGC--GICEKNCPKDAIHVENNLASIDYDKCINCGICVSKCPTGAIYCEYPER 268



 Score = 37.7 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C    CV VC  D  +       +  ++C+ C  C   CP   I
Sbjct: 144 CGGGTCVSVCEFDAIHMVNGVAVVDKEKCVACMKCINICPKKII 187


>gi|239983394|ref|ZP_04705918.1| nitrate reductase beta chain NarH [Streptomyces albus J1074]
 gi|291455218|ref|ZP_06594608.1| nitrate reductase subunit beta NarH [Streptomyces albus J1074]
 gi|291358167|gb|EFE85069.1| nitrate reductase subunit beta NarH [Streptomyces albus J1074]
          Length = 506

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C     C   CP   I  
Sbjct: 151 CEHCLNPSCVAACPSGAIYKRSEDGIVLVDQDRCRGWRECVTGCPYKKIYF 201


>gi|225619733|ref|YP_002720990.1| iron only hydrogenase large subunit, C-terminal domain-containing
           protein [Brachyspira hyodysenteriae WA1]
 gi|225214552|gb|ACN83286.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Brachyspira hyodysenteriae WA1]
          Length = 490

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT  C  C    C+  CP D      E    I   +CI+CG+C   CP  AI     P
Sbjct: 112 FMVTNACQACLARPCMVNCPKDAITILDEKRAHIDSSKCINCGLCLKNCPYHAIIYIPVP 171

Query: 62  GLE 64
             E
Sbjct: 172 CEE 174



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            ++ +  CI C                  C E CPV    + +     I   +CI CG C
Sbjct: 143 AHIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNDQGKEVIDYHKCIFCGNC 202

Query: 47  EPECPVDAIK 56
             ECP  A+ 
Sbjct: 203 MRECPFSAMM 212


>gi|224541365|ref|ZP_03681904.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525699|gb|EEF94804.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM
           15897]
          Length = 345

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ CI C    C  +CP  C +       I   +C+ CG C   CPV AI+ 
Sbjct: 144 YTITDRCIHC--GKCETICPQRCIHNE----VIDVAQCLHCGACLEICPVQAIEF 192


>gi|152978944|ref|YP_001344573.1| hydrogenase 2 protein HybA [Actinobacillus succinogenes 130Z]
 gi|150840667|gb|ABR74638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Actinobacillus succinogenes 130Z]
          Length = 330

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP    + D 
Sbjct: 109 IKKQCMHCVEPNCVSVCPVQALTKNPITGIVQYDPDICTGCRYCMVACPFTVPQYDY 165


>gi|332086656|gb|EGI91796.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella boydii 5216-82]
          Length = 328

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +      C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKYVCTGCRYCMVACPYNVPKYDY 164


>gi|310825953|ref|YP_003958310.1| putative nitrite and sulfite reductase subunit [Eubacterium limosum
           KIST612]
 gi|308737687|gb|ADO35347.1| putative nitrite and sulfite reductase subunit [Eubacterium limosum
           KIST612]
          Length = 311

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C      + CP+D     +  L I  ++C +CG+C   C  DAI 
Sbjct: 171 CKGCSKCSVEDRCPMDAATVTDGKLVIDEEKCNNCGLCVDNCRFDAIP 218


>gi|269140614|ref|YP_003297315.1| hypothetical protein ETAE_3273 [Edwardsiella tarda EIB202]
 gi|267986275|gb|ACY86104.1| hypothetical protein ETAE_3273 [Edwardsiella tarda EIB202]
 gi|304560401|gb|ADM43065.1| NrfC-like protein [Edwardsiella tarda FL6-60]
          Length = 211

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C    C EVCP    Y   +  + I    C  CG C   CP  A
Sbjct: 88  CQHCDPAPCQEVCPSQATYRDAHGLIQIDARRCSGCGYCIRACPYQA 134


>gi|205354067|ref|YP_002227868.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273848|emb|CAR38847.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326629183|gb|EGE35526.1| hydrogenase-2 subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 328

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHHDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
 gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
          Length = 584

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           +V + C  C    C + CPV      +     I  + CI CG C   C  +AI
Sbjct: 531 IVEDKCKGC--GACKKKCPVSAISGNKKEAHVIDKNICIKCGKCMETCKFNAI 581


>gi|157370673|ref|YP_001478662.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Serratia proteamaculans 568]
 gi|157322437|gb|ABV41534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 204

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+     ++ + ++   CI C +C   CP  AI       L +   
Sbjct: 51  CHQCEDAPCAQVCPVNAIRHQDDAIVLNESLCISCKLCGIACPFGAIGFGGSTPLAIPAD 110

Query: 69  INSEYATQWPNITTKKES 86
            N+  A   P        
Sbjct: 111 CNTSLALPAPKAPRPISP 128


>gi|186470960|ref|YP_001862278.1| nitrate reductase, beta subunit [Burkholderia phymatum STM815]
 gi|184197269|gb|ACC75232.1| nitrate reductase, beta subunit [Burkholderia phymatum STM815]
          Length = 507

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKRDEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|89092828|ref|ZP_01165780.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92]
 gi|89082853|gb|EAR62073.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92]
          Length = 555

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 3   YVVTENC-------ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++  + C         C  T C++VCP D      + + I P  C   G C   CP  AI
Sbjct: 178 HINNDICAHSSRGQTGC--TRCLDVCPADAISSINDLVNIDPHMCHGAGGCATACPTGAI 235

Query: 56  KPDTE 60
                
Sbjct: 236 SYALP 240



 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDT 59
           V    C LC    CV VCP      G    A++  E  C+ CG+C+  CP +AI+ +T
Sbjct: 419 VDNAKCTLCL--SCVAVCPTQALTAGGETPALNFVEQSCVQCGLCDSACPENAIQLET 474


>gi|330838558|ref|YP_004413138.1| nitrate reductase, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|329746322|gb|AEB99678.1| nitrate reductase, beta subunit [Selenomonas sputigena ATCC 35185]
          Length = 473

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + I  D C     C P CP   I  + +     
Sbjct: 181 CNHCLNPACVAACPSGAIYKRDEDGVVLISQDVCRGWRHCVPACPYKKIYYNWKSNKAE 239


>gi|320185160|gb|EFW59940.1| putative oxidoreductase Fe-S binding subunit [Shigella flexneri
          CDC 796-83]
          Length = 532

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 85


>gi|312912566|dbj|BAJ36540.1| hypothetical protein STMDT12_C15970 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|295696267|ref|YP_003589505.1| nitrate reductase, beta subunit [Bacillus tusciae DSM 2912]
 gi|295411869|gb|ADG06361.1| nitrate reductase, beta subunit [Bacillus tusciae DSM 2912]
          Length = 500

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  +       
Sbjct: 182 CEHCLNPACVAACPSGAMYKREEDGIVLVDQEACRGWRFCVSACPYKKVYFNWNTHKAE 240


>gi|289548611|ref|YP_003473599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
 gi|289182228|gb|ADC89472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
          Length = 232

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + ++C+ C+   CV VCP    Y+ E    + ++ D+CI C +C   CP    + D  
Sbjct: 67  FHLPKSCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWSCPYGCREFDEA 126

Query: 61  PGLEL 65
             +  
Sbjct: 127 DKVMK 131


>gi|237731553|ref|ZP_04562034.1| nitrate reductase 2 beta subunit [Citrobacter sp. 30_2]
 gi|226907092|gb|EEH93010.1| nitrate reductase 2 beta subunit [Citrobacter sp. 30_2]
          Length = 514

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|255658479|ref|ZP_05403888.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM
           20544]
 gi|260849277|gb|EEX69284.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM
           20544]
          Length = 374

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C+   C + C  D      N   IH D C  CG C   C  DAI+ +     
Sbjct: 192 VNEELCRGCRK--CAKECGSDAITYENNKAVIHEDLCKGCGRCIGACSYDAIRNEQWDAG 249

Query: 64  ELWLKINSEYAT 75
           +L  +  +EYA 
Sbjct: 250 DLLDRKMAEYAQ 261


>gi|220932266|ref|YP_002509174.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothermothrix orenii H 168]
 gi|219993576|gb|ACL70179.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothermothrix orenii H 168]
          Length = 331

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI C    C  VCPVD     +N   I  D+CI+CG+C  +CP  AI+ +
Sbjct: 217 CIGC--GICARVCPVDAITIEDNLAVIDYDKCINCGLCAEKCPTGAIEFE 264



 Score = 40.7 bits (94), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECP 51
           +T+ C+ C  T C   CPVD      +    I+P+ C+ CG+C   C 
Sbjct: 273 ITDKCVGC--TRCARACPVDAIEGSLKEKHEINPETCVKCGICYDTCK 318



 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 6   TENCI-LCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           T+ C   C    DCV VCP D     EN L  ++ D+C  CG C   CP   I
Sbjct: 135 TKACQYGCLGLGDCVAVCPFDAIEMNENGLPEVNYDKCTGCGKCVEACPRGII 187



 Score = 36.9 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C    C E CP          +      D+C+ C  C   CPVDAI+   +   E
Sbjct: 244 DKCINC--GLCAEKCPTGAIEFEGRRIEEIHITDKCVGCTRCARACPVDAIEGSLKEKHE 301



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVD--------------CFYEGENFLA--IHPDECIDCGVCEPEC 50
           + C  C    CVE CP                C       +   +    CI CG+C   C
Sbjct: 170 DKCTGC--GKCVEACPRGIITLAPLSGKNHIRCSSHDHGKVVKGVCEVGCIGCGICARVC 227

Query: 51  PVDAIKPDTEPGLELW 66
           PVDAI  +    +  +
Sbjct: 228 PVDAITIEDNLAVIDY 243


>gi|218886034|ref|YP_002435355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756988|gb|ACL07887.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 195

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDA 54
            C  C++  C+  CPV  + + E+ + +H    CI CG C   CP  A
Sbjct: 65  ACNHCENPACLNACPVKAYEKREDGVVVHHQDRCIGCGNCIRSCPYGA 112


>gi|213649211|ref|ZP_03379264.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 199

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|91211799|ref|YP_541785.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UTI89]
 gi|117624664|ref|YP_853577.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli APEC
           O1]
 gi|218559403|ref|YP_002392316.1| oxidoreductase Fe-S binding subunit [Escherichia coli S88]
 gi|237704983|ref|ZP_04535464.1| AegA protein [Escherichia sp. 3_2_53FAA]
 gi|91073373|gb|ABE08254.1| putative oxidoreductase Fe-S subunit [Escherichia coli UTI89]
 gi|115513788|gb|ABJ01863.1| putative oxidoreductase Fe-S subunit [Escherichia coli APEC O1]
 gi|218366172|emb|CAR03918.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli S88]
 gi|226901349|gb|EEH87608.1| AegA protein [Escherichia sp. 3_2_53FAA]
 gi|307625970|gb|ADN70274.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UM146]
 gi|323949500|gb|EGB45388.1| glutamate synthase [Escherichia coli H252]
 gi|323955716|gb|EGB51474.1| glutamate synthase [Escherichia coli H263]
          Length = 659

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
 gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
          Length = 600

 Score = 51.1 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++T+ C  C  T C   CP +           I  + CI CG C   C  +AI
Sbjct: 542 IITDKCTGC--TACAIFCPANAISGERLKPHFIDQEACIKCGTCYEVCRFNAI 592


>gi|325576997|ref|ZP_08147568.1| hydrogenase-2 operon protein HybA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160955|gb|EGC73074.1| hydrogenase-2 operon protein HybA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 345

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +  
Sbjct: 106 VKKQCMHCVDPNCVAVCPVQALTKDPKTGIVKYDPDICTGCRYCMVGCPFDVPKYDYDNP 165

Query: 63  LEL 65
              
Sbjct: 166 FGE 168


>gi|309793436|ref|ZP_07687863.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 145-7]
 gi|308123023|gb|EFO60285.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 145-7]
          Length = 239

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 33.8 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P +++WL+ N  Y
Sbjct: 199 DSPEIQVWLQDNKYY 213


>gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 598

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M YV+  E C  C    C + CPV     E +    I  ++C+ CGVC  +CP  AI
Sbjct: 540 MKYVINAETCKSC--GICAKQCPVGAISGEKKVPYVIDQNKCVKCGVCMEKCPFKAI 594


>gi|300904520|ref|ZP_07122360.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 84-1]
 gi|301303184|ref|ZP_07209310.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 124-1]
 gi|300403547|gb|EFJ87085.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 84-1]
 gi|300841593|gb|EFK69353.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 124-1]
 gi|315257527|gb|EFU37495.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 85-1]
          Length = 239

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|261252304|ref|ZP_05944877.1| NrfC protein [Vibrio orientalis CIP 102891]
 gi|260935695|gb|EEX91684.1| NrfC protein [Vibrio orientalis CIP 102891]
          Length = 229

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C  C++  CV VCP    Y+ E    + +H D+C+ CG C   CP      + E 
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKDKCVGCGYCLAACPYQVRFFNPED 153


>gi|262042086|ref|ZP_06015262.1| glutamate synthase subunit small chain [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|330013592|ref|ZP_08307680.1| putative oxidoreductase Fe-S binding subunit [Klebsiella sp. MS
           92-3]
 gi|259040567|gb|EEW41662.1| glutamate synthase subunit small chain [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|328533471|gb|EGF60204.1| putative oxidoreductase Fe-S binding subunit [Klebsiella sp. MS
           92-3]
          Length = 660

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   CV  CP D   +  + + +  ++CI C  C   CP   ++    P 
Sbjct: 56  CRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFGVMQVVVTPQ 109


>gi|237859143|gb|ACR23747.1| RnfB [Acetobacterium woodii DSM 1030]
          Length = 333

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y++ ENCI C    C + CPV+       +    I  D CI CG+C  +C   AI+ 
Sbjct: 272 AYIIEENCIAC--GLCAKNCPVNAITGEIKKPPYVIDHDMCIGCGICFDKCRKSAIEM 327



 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T  CI C    CV+ C  D      N   I  D+C  C  C  +CP++ I  D E 
Sbjct: 214 TTACIAC--GACVKACRFDAITVENNCAKIDYDKCRQCYECVDKCPMNCISGDVEY 267



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C  C    CV+ CP++C       G++   I  + CI CG+C   CPV+AI  +
Sbjct: 244 DKCRQCYE--CVDKCPMNCISGDVEYGKSTAYIIEENCIACGLCAKNCPVNAITGE 297


>gi|62181096|ref|YP_217513.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62128729|gb|AAX66432.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322715583|gb|EFZ07154.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 209

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|56412592|ref|YP_149667.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361527|ref|YP_002141163.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56126849|gb|AAV76355.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093003|emb|CAR58436.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 209

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP DA
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYDA 125


>gi|332295312|ref|YP_004437235.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178415|gb|AEE14104.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 573

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +V+ E C  CK   C   CP +         +   +I+P  C  CG C P+CP DA+
Sbjct: 496 AHVIEEKCTGCKL--CENSCPYEAISFVNRNDKVIASINPAICKGCGGCVPDCPEDAL 551


>gi|332089785|gb|EGI94886.1| protein aegA [Shigella dysenteriae 155-74]
          Length = 578

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 3  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 55


>gi|293605260|ref|ZP_06687646.1| respiratory nitrate reductase, beta subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292816316|gb|EFF75411.1| respiratory nitrate reductase, beta subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 522

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|257790195|ref|YP_003180801.1| dimethylsulfoxide reductase, chain B [Eggerthella lenta DSM 2243]
 gi|257474092|gb|ACV54412.1| dimethylsulfoxide reductase, chain B [Eggerthella lenta DSM 2243]
          Length = 206

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C+  CP     +  +   +   P++CI CG C   CP  A K D E
Sbjct: 60  YYVSVACNHCDSPACMAKCPQGAISKDPDTGIVNNDPEKCIGCGTCAIACPYSAPKVDEE 119


>gi|126727358|ref|ZP_01743193.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703353|gb|EBA02451.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 650

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C+ VCP          +AI P  C  CG C   CP  AI  D  P   ++ ++
Sbjct: 281 CLNVCPTGAIVSAGEHVAIDPMICAGCGACSAVCPSGAISYDAPPVETVFQRL 333



 Score = 36.9 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V  E+C LC    CV +CP     +  +   +   E  C+ CG+C   CP +AI
Sbjct: 497 VDKESCTLCL--SCVSLCPSGALADNPDMPQLRFQEDACLQCGLCSNICPENAI 548


>gi|71279765|ref|YP_268923.1| electron transport complex protein RnfB [Colwellia psychrerythraea
           34H]
 gi|71145505|gb|AAZ25978.1| electron transport complex, RnfABCDGE type, B subunit [Colwellia
           psychrerythraea 34H]
          Length = 189

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
            +V+ E+CI C  T C++ CPVD      +    I  DEC  C +C   CPVD I   + 
Sbjct: 112 AFVIEEDCIGC--TKCIQACPVDAIIGAAKQMHTIIIDECTGCDLCVAPCPVDCIEMREL 169

Query: 60  EPGLELW 66
              +  W
Sbjct: 170 PDTIHNW 176


>gi|89893277|ref|YP_516764.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332725|dbj|BAE82320.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 182

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y ++ +C  C++ +CV VCP   + + ++ +    P  C  CG C   CP  
Sbjct: 56  YFLSLSCNHCENPECVRVCPEGTYRKRKDGIVLHDPWRCSGCGKCTHACPFH 107


>gi|18413622|dbj|BAB84313.1| probable nitrate reductase beta subunit [Halomonas
           halodenitrificans]
          Length = 528

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|332086810|gb|EGI91946.1| glutamate synthase [NADPH] small chain [Shigella boydii 5216-82]
          Length = 491

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106


>gi|327542557|gb|EGF29031.1| molybdopterin oxidoreductase, iron sulfur subunit [Rhodopirellula
           baltica WH47]
          Length = 598

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           VT  C  C+   C+  CPV  + +      +    D+CI C  C   CP +
Sbjct: 151 VTTACHHCEDPGCLNGCPVKAYDKDPETGIVRHLDDQCIGCKYCTMMCPYE 201


>gi|315634304|ref|ZP_07889591.1| hydrogenase-2 operon protein HybA [Aggregatibacter segnis ATCC
           33393]
 gi|315476894|gb|EFU67639.1| hydrogenase-2 operon protein HybA [Aggregatibacter segnis ATCC
           33393]
          Length = 346

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +  
Sbjct: 107 VKKQCMHCVDPNCVAVCPVQALTKDPKTGIVKYDPDICTGCRYCMVGCPFDVPKYDYDNP 166

Query: 63  LEL 65
              
Sbjct: 167 FGE 169


>gi|312961521|ref|ZP_07776022.1| respiratory nitrate reductase beta chain [Pseudomonas fluorescens
           WH6]
 gi|311284200|gb|EFQ62780.1| respiratory nitrate reductase beta chain [Pseudomonas fluorescens
           WH6]
          Length = 512

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|306815076|ref|ZP_07449232.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli NC101]
 gi|305851724|gb|EFM52177.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli NC101]
 gi|324007028|gb|EGB76247.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 57-2]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 35.3 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIK--PD 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQENKYY 213


>gi|301155291|emb|CBW14757.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Haemophilus
           parainfluenzae T3T1]
          Length = 346

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +  
Sbjct: 107 VKKQCMHCVDPNCVAVCPVQALTKDPKTGIVKYDPDICTGCRYCMVGCPFDVPKYDYDNP 166

Query: 63  LEL 65
              
Sbjct: 167 FGE 169


>gi|300918039|ref|ZP_07134661.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 115-1]
 gi|300414781|gb|EFJ98091.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 115-1]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|293409983|ref|ZP_06653559.1| ferredoxin protein ydhX [Escherichia coli B354]
 gi|291470451|gb|EFF12935.1| ferredoxin protein ydhX [Escherichia coli B354]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|170767182|ref|ZP_02901635.1| protein aegA [Escherichia albertii TW07627]
 gi|170123516|gb|EDS92447.1| protein aegA [Escherichia albertii TW07627]
          Length = 659

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|145298799|ref|YP_001141640.1| hydrogenase 4 Fe-S subunit [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142851571|gb|ABO89892.1| hydrogenase 4 Fe-S subunit [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 231

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C    C++VCPV+   +  + + ++   CI C +C   CP  AI+
Sbjct: 51 CRHCDDAPCIKVCPVEAIAQTGDCVQLNESLCIGCNLCAVACPFGAIQ 98


>gi|123443798|ref|YP_001007769.1| hydrogenase 2 protein HybA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090759|emb|CAL13636.1| hydrogenase-2 operon protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 342

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D    
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYDYHNP 172

Query: 63  LEL 65
              
Sbjct: 173 FGK 175


>gi|157163871|ref|YP_001467642.1| ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
           [Campylobacter concisus 13826]
 gi|157101373|gb|ABV23503.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter concisus 13826]
          Length = 183

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            +T +C  C    C++VCPV  + + EN +     D+CI CG C   CP  +I    +  
Sbjct: 54  FITHSCHHCDEPACMDVCPVGAYIKLENGVVQPLHDKCIGCGYCLMACPYGSITKGKDGK 113

Query: 63  LEL 65
            + 
Sbjct: 114 AQK 116


>gi|82777147|ref|YP_403496.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|188496456|ref|ZP_03003726.1| iron-sulfur cluster-binding protein [Escherichia coli 53638]
 gi|256018135|ref|ZP_05432000.1| putative oxidoreductase, Fe-S subunit [Shigella sp. D9]
 gi|293446045|ref|ZP_06662467.1| ferredoxin-like protein ydhX [Escherichia coli B088]
 gi|300819572|ref|ZP_07099765.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 107-1]
 gi|300924703|ref|ZP_07140651.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 182-1]
 gi|301326568|ref|ZP_07219907.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 78-1]
 gi|331653069|ref|ZP_08354074.1| putative oxidoreductase Fe-S subunit [Escherichia coli M718]
 gi|332279180|ref|ZP_08391593.1| conserved hypothetical protein [Shigella sp. D9]
 gi|81241295|gb|ABB62005.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|188491655|gb|EDU66758.1| iron-sulfur cluster-binding protein [Escherichia coli 53638]
 gi|291322875|gb|EFE62303.1| ferredoxin-like protein ydhX [Escherichia coli B088]
 gi|300419130|gb|EFK02441.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 182-1]
 gi|300527820|gb|EFK48882.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 107-1]
 gi|300846730|gb|EFK74490.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 78-1]
 gi|324016534|gb|EGB85753.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 117-3]
 gi|331049167|gb|EGI21239.1| putative oxidoreductase Fe-S subunit [Escherichia coli M718]
 gi|332101532|gb|EGJ04878.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|26247920|ref|NP_753960.1| putative ferredoxin-like protein ydhX [Escherichia coli CFT073]
 gi|227885913|ref|ZP_04003718.1| formate-dependent nitrite reductase [Fe-S] protein [Escherichia
           coli 83972]
 gi|300995335|ref|ZP_07181032.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 45-1]
 gi|301051000|ref|ZP_07197845.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 185-1]
 gi|26108323|gb|AAN80525.1|AE016761_100 Putative ferredoxin-like protein ydhX [Escherichia coli CFT073]
 gi|227837092|gb|EEJ47558.1| formate-dependent nitrite reductase [Fe-S] protein [Escherichia
           coli 83972]
 gi|300297333|gb|EFJ53718.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 185-1]
 gi|300406168|gb|EFJ89706.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 45-1]
 gi|312946271|gb|ADR27098.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315290549|gb|EFU49923.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 153-1]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 35.3 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIK--PD 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQENKYY 213


>gi|32470879|ref|NP_863872.1| molybdopterin oxidoreductase, iron sulfur subunit [Rhodopirellula
           baltica SH 1]
 gi|32443024|emb|CAD71545.1| molybdopterin oxidoreductase, iron sulfur subunit [Rhodopirellula
           baltica SH 1]
          Length = 623

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           VT  C  C+   C+  CPV  + +      +    D+CI C  C   CP +
Sbjct: 176 VTTACHHCEDPGCLNGCPVKAYDKDPETGIVRHLDDQCIGCKYCTMMCPYE 226


>gi|323977355|gb|EGB72441.1| glutamate synthase [Escherichia coli TW10509]
          Length = 659

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|295102368|emb|CBK99913.1| Fe-S-cluster-containing hydrogenase components 1 [Faecalibacterium
           prausnitzii L2-6]
          Length = 214

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            + C  C+   C   CP       E  +  +  D+CI CG C   CP      + E
Sbjct: 118 PDTCRQCEDPACGNACPQKAITTNEQGIRVVDTDKCIGCGACHEACPWHMPTVNPE 173



 Score = 40.0 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V T+ CI C    C E CP                +CI CG C   CP  A+    
Sbjct: 148 VDTDKCIGC--GACHEACPWHMPTVNPETGK--SSKCIACGACVAGCPSGALSIVD 199


>gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1]
 gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1]
          Length = 606

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECPVD 53
           Y +T+ CI C    C + CP  C            G     I+  +CI CG C   CP  
Sbjct: 542 YFITDKCIGC--GMCAKACPASCIKPVGEVVNEKTGRRRHVINKVDCIKCGACMATCPPK 599


>gi|257790388|ref|YP_003180994.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488809|ref|ZP_07947342.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|257474285|gb|ACV54605.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912114|gb|EFV33690.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 201

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C++C++  CV VCP       +    + I  ++CI C  C   CP  A            
Sbjct: 57  CMMCENPPCVAVCPQGATTIRDEDGIVVIDKEKCIGCKSCMEACPYGARYLVQSEDGYFG 116

Query: 67  LKINSEYATQWPNITT 82
            ++N   +  + N+  
Sbjct: 117 SELNEYESVAYENMPK 132


>gi|505330|gb|AAB46944.1| Fe-S center and glutamate synthase (GltD) protein [Escherichia
           coli]
          Length = 652

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|89896465|ref|YP_519952.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335913|dbj|BAE85508.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 178

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           +C+ C    C  VCP   + + E+ L I   D+C+ CG C   CP  A K 
Sbjct: 58  SCMHCAEPQCASVCPTKAYTKREDGLVIQDHDKCVGCGYCIYACPYQAPKM 108


>gi|110641647|ref|YP_669377.1| respiratory nitrate reductase 2 beta chain [Escherichia coli 536]
 gi|191172837|ref|ZP_03034373.1| nitrate reductase 2, beta subunit [Escherichia coli F11]
 gi|110343239|gb|ABG69476.1| respiratory nitrate reductase 2 beta chain [Escherichia coli 536]
 gi|190906843|gb|EDV66446.1| nitrate reductase 2, beta subunit [Escherichia coli F11]
 gi|324015304|gb|EGB84523.1| nitrate reductase, beta subunit [Escherichia coli MS 60-1]
          Length = 514

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|323187320|gb|EFZ72631.1| nitrate reductase, beta subunit [Escherichia coli RN587/1]
          Length = 514

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|310658147|ref|YP_003935868.1| hydrogenase, 4fe-4S ferredoxin-type component [Clostridium
           sticklandii DSM 519]
 gi|308824925|emb|CBH20963.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Clostridium
           sticklandii]
          Length = 185

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C   CPV+   + +N + +    CI C  C   CP  A++   E      ++
Sbjct: 65  CRHCEDAPCANSCPVNAIKKVDNAIVVDEKLCIGCKTCILACPFGALELLPEYKEAQEVQ 124


>gi|311280100|ref|YP_003942331.1| putative oxidoreductase, 4Fe-4S subunit [Enterobacter cloacae SCF1]
 gi|308749295|gb|ADO49047.1| putative oxidoreductase, 4Fe-4S subunit [Enterobacter cloacae SCF1]
          Length = 158

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  CV  CPV     GE  +      CI C  C   CP   I  +  
Sbjct: 51  CHQCENAPCVAACPVRALTMGEERVEADSARCIGCQSCVVACPFGVITIEMP 102


>gi|302336797|ref|YP_003802003.1| cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM
           11293]
 gi|301633982|gb|ADK79409.1| Cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM
           11293]
          Length = 308

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V    C  C    C+  C  D  +   +   + P  C  CGVC   CP  A   + E 
Sbjct: 71  AVVDAGLCTGC--GKCISFCRFDAIHMENSVAQVDPVGCEGCGVCTLVCPSSAFTLEEEM 128

Query: 62  GLELWL 67
             + ++
Sbjct: 129 AGQWFV 134


>gi|260597862|ref|YP_003210433.1| anaerobic dimethyl sulfoxide reductase subunit B [Cronobacter
           turicensis z3032]
 gi|260217039|emb|CBA30749.1| Anaerobic dimethyl sulfoxide reductase chain B [Cronobacter
           turicensis z3032]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C   CP    +  EG+  + ++ D+C+ CG C   CP  A + +T
Sbjct: 71  AYTLSISCNHCADPICTRNCPTTAMHKREGDGIVRVNTDKCVGCGYCAWSCPYGAPQRNT 130

Query: 60  EPGLE 64
           + G  
Sbjct: 131 QTGQM 135


>gi|260948246|ref|XP_002618420.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238848292|gb|EEQ37756.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 219

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 117 EERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 174

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N EY+T+     +  K++ L +  K +  
Sbjct: 175 VESP----------NVEYSTETREELLYNKEKLLENGDKWEQE 207


>gi|227825061|ref|ZP_03989893.1| hydrogenase large subunit [Acidaminococcus sp. D21]
 gi|226905560|gb|EEH91478.1| hydrogenase large subunit [Acidaminococcus sp. D21]
          Length = 501

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y++T+ C  C    C+  CP       +    I  D C++CG C+  CP  A+   + P
Sbjct: 105 YMITDVCRRCLTHRCMNGCPKKAISVYQGRAHIDYDVCVECGNCKRACPYGAVVEISRP 163



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
            ++  + C+ C +                C   C V   + G +    I  + C++CG C
Sbjct: 135 AHIDYDVCVECGNCKRACPYGAVVEISRPCENACKVHALHMGADKKAEIDKNVCVECGAC 194

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 195 RGACPFGAI 203


>gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 596

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C  C    C   CPV   Y+ E+    I   +C  CG+C   CP   IK +
Sbjct: 543 VIREECRKCS--ICFRNCPVGAIYKDEDGTYVIDQSKCTKCGICFQVCPFKVIKKE 596


>gi|73669121|ref|YP_305136.1| flavoprotein [Methanosarcina barkeri str. Fusaro]
 gi|72396283|gb|AAZ70556.1| archaeal flavoprotein [Methanosarcina barkeri str. Fusaro]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           M Y +  + C  C+     E CP     E   F   I   +C  CG+C+  CP  AIK  
Sbjct: 144 MPYNIDRKQCRHCEDCPPRENCPHGAITEKNGFTDQIDLLKCKGCGICKELCPYKAIKGG 203

Query: 59  TEPGLELWLKI-NSEYATQWPNITTKKES 86
               L   + I N E       IT  +  
Sbjct: 204 PVEVLVRDVDIRNVEIVKGLQGITVLESP 232


>gi|219669808|ref|YP_002460243.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540068|gb|ACL21807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 162

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T VV   C  C+   CV+VCP    Y+ E  + ++ + CI C +C   CP  +I  
Sbjct: 56  TTVVLTQCRQCEDAPCVKVCPNGSLYQEEGLVKLNRETCIGCKLCARACPFGSITM 111


>gi|296104200|ref|YP_003614346.1| anaerobic dimethyl sulfoxide reductase subunit B [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058659|gb|ADF63397.1| anaerobic dimethyl sulfoxide reductase subunit B [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSVSCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|238920547|ref|YP_002934062.1| hydrogenase 2 protein HybA [Edwardsiella ictaluri 93-146]
 gi|238870116|gb|ACR69827.1| hydrogenase 2 protein HybA [Edwardsiella ictaluri 93-146]
          Length = 327

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV     +     +   PD C  C  C   CP D  K D +
Sbjct: 109 IKKQCMHCVDPNCVSVCPVSALKKHPVTGIVMYDPDVCTGCRYCMVACPFDVPKYDYD 166


>gi|257791834|ref|YP_003182440.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317489834|ref|ZP_07948331.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830006|ref|ZP_08163464.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|257475731|gb|ACV56051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911083|gb|EFV32695.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325488173|gb|EGC90610.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 261

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 4/80 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C +  CVE CPV   +         +   +CI C  C   CP    +       E  
Sbjct: 110 CRQCPYPSCVEACPVGAMHADPETGVRLVDEGKCIGCERCVEACPFTPSRVQW--NFEDK 167

Query: 67  LKINSEYATQWPNITTKKES 86
                +     P    +   
Sbjct: 168 HAQKCDLCKNTPFWDEEGGP 187


>gi|220922114|ref|YP_002497415.1| nitrate reductase subunit beta [Methylobacterium nodulans ORS 2060]
 gi|219946720|gb|ACL57112.1| nitrate reductase, beta subunit [Methylobacterium nodulans ORS
           2060]
          Length = 509

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGVVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|304438798|ref|ZP_07398725.1| electron transport complex protein RnfB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304372721|gb|EFM26300.1| electron transport complex protein RnfB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 315

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C + CP D  +  +N  AI   +CI+CG+C   CP  AI  +    +   +K
Sbjct: 225 CIGC--GICEKKCPKDAIHVTDNLAAIDYTKCINCGICVANCPTGAIFCEYPERIAK-IK 281

Query: 69  INSEY 73
            N   
Sbjct: 282 ENQRL 286


>gi|302339910|ref|YP_003805116.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
          smaragdinae DSM 11293]
 gi|301637095|gb|ADK82522.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
          smaragdinae DSM 11293]
          Length = 702

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +    C+ C    C+  CPV    +G  + + IH D CI CG C   C  +A +   +  
Sbjct: 11 IDESKCVNC--HACIAACPVKYCIDGSGSTVTIHHDLCIGCGKCIEACTHNA-RSVVDDT 67

Query: 63 LELWLKINSE 72
             +  ++ +
Sbjct: 68 EAFFDALSRK 77


>gi|302334990|ref|YP_003800197.1| Radical SAM domain protein [Olsenella uli DSM 7084]
 gi|301318830|gb|ADK67317.1| Radical SAM domain protein [Olsenella uli DSM 7084]
          Length = 297

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C  TDCV  CP       E  +      CI C  C   C   A
Sbjct: 64  CINC--TDCVAGCPSGALSLREGRVVWDEATCIGCDQCIHVCGHRA 107


>gi|15802083|ref|NP_288105.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           EDL933]
 gi|15831632|ref|NP_310405.1| oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|261227884|ref|ZP_05942165.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258382|ref|ZP_05950915.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282801|ref|YP_003499619.1| hypothetical protein G2583_2066 [Escherichia coli O55:H7 str.
           CB9615]
 gi|12515670|gb|AAG56658.1|AE005390_5 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|13361845|dbj|BAB35801.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|209769268|gb|ACI82946.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769270|gb|ACI82947.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769274|gb|ACI82949.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|290762674|gb|ADD56635.1| Uncharacterized ferredoxin-like protein ydhX [Escherichia coli
           O55:H7 str. CB9615]
 gi|320641885|gb|EFX11253.1| hypothetical protein ECO5101_07322 [Escherichia coli O157:H7 str.
           G5101]
 gi|320647342|gb|EFX16150.1| hypothetical protein ECO9389_09063 [Escherichia coli O157:H- str.
           493-89]
 gi|320652636|gb|EFX20905.1| hypothetical protein ECO2687_03555 [Escherichia coli O157:H- str. H
           2687]
 gi|320653021|gb|EFX21217.1| hypothetical protein ECO7815_12485 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658705|gb|EFX26382.1| hypothetical protein ECO5905_08419 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668695|gb|EFX35500.1| hypothetical protein ECOSU61_21168 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|332981823|ref|YP_004463264.1| Fe-S cluster domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332699501|gb|AEE96442.1| Fe-S cluster domain protein [Mahella australiensis 50-1 BON]
          Length = 434

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C  C  T+C++ CP +          I  + CIDCG C   CP  A    T+P  
Sbjct: 13 KEKCRGC--TNCIKRCPTEAIRVRAGKANITAERCIDCGECIRVCPYHAKLAVTDPVD 68


>gi|212637704|ref|YP_002314229.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212559188|gb|ACJ31642.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 195

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|170749001|ref|YP_001755261.1| nitrate reductase, beta subunit [Methylobacterium radiotolerans JCM
           2831]
 gi|170655523|gb|ACB24578.1| nitrate reductase, beta subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 509

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGVVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|54611544|gb|AAH21616.2| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Mus musculus]
          Length = 212

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 168 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 200


>gi|54024629|ref|YP_118871.1| NADH dehydrogenase subunit H [Nocardia farcinica IFM 10152]
 gi|81680061|sp|Q5YWD4|NUOHI_NOCFA RecName: Full=NADH-quinone oxidoreductase subunits H/I; AltName:
           Full=NADH dehydrogenase I subunits H/I; AltName:
           Full=NDH-1 subunit H/I
 gi|54016137|dbj|BAD57507.1| putative NADH dehydrogenase I chain H [Nocardia farcinica IFM
           10152]
          Length = 597

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 20/102 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 463 EKCIGCEL--CAWACPADAIYVEGADNTEDERYSPGERYGRVYQINYLRCIGCGLCIEAC 520

Query: 51  PVDAIKP--DTEPGLELWLKINSEYATQWPNITTKKESLPSA 90
           P  A+    D E   +    +  E       +     + P A
Sbjct: 521 PTRALTMTNDYELTDDNRADLIYEKDRLLAPLAPGMVAPPPA 562


>gi|188495190|ref|ZP_03002460.1| hydrogenase-4 component A [Escherichia coli 53638]
 gi|188490389|gb|EDU65492.1| hydrogenase-4 component A [Escherichia coli 53638]
          Length = 200

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|301026855|ref|ZP_07190255.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 69-1]
 gi|300395295|gb|EFJ78833.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 69-1]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|300976135|ref|ZP_07173293.1| nitrate reductase, beta subunit [Escherichia coli MS 200-1]
 gi|300308628|gb|EFJ63148.1| nitrate reductase, beta subunit [Escherichia coli MS 200-1]
          Length = 514

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|260887958|ref|ZP_05899221.1| nitrate reductase, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|260862311|gb|EEX76811.1| nitrate reductase, beta subunit [Selenomonas sputigena ATCC 35185]
          Length = 465

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + I  D C     C P CP   I  + +     
Sbjct: 173 CNHCLNPACVAACPSGAIYKRDEDGVVLISQDVCRGWRHCVPACPYKKIYYNWKSNKAE 231


>gi|257792114|ref|YP_003182720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476011|gb|ACV56331.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 207

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           M Y +T  C  C++  C +VCPV   Y+      +    D+CI C +C   CP  
Sbjct: 58  MRY-ITVGCQHCENPTCTKVCPVGATYKDPETGVVRQDYDKCIGCRMCMAACPYT 111


>gi|218779665|ref|YP_002430983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761049|gb|ACL03515.1| Periplasmic 4Fe-4S Ferredoxin protein with transmembrane domain
           [Desulfatibacillum alkenivorans AK-01]
          Length = 312

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C+   CV  C V    + EN   I    +CI C  C   CP      + +
Sbjct: 115 CMHCQDPACVSACIVGALTKQENGAVIYDKSKCIGCRYCMVACPFGIPAYEYD 167


>gi|206578002|ref|YP_002237195.1| AegA protein [Klebsiella pneumoniae 342]
 gi|290508337|ref|ZP_06547708.1| oxidoreductase Fe-S binding subunit [Klebsiella sp. 1_1_55]
 gi|206567060|gb|ACI08836.1| AegA protein [Klebsiella pneumoniae 342]
 gi|289777731|gb|EFD85728.1| oxidoreductase Fe-S binding subunit [Klebsiella sp. 1_1_55]
          Length = 660

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   CV  CP D   +  + + +  ++CI C  C   CP   ++    P 
Sbjct: 56  CRHCEDAPCVRSCPNDAIAQSGDSVQVSQEKCIGCKSCMVACPFGVMQVVVTPQ 109


>gi|110802368|ref|YP_699704.1| ferredoxin (fdxA) [Clostridium perfringens SM101]
 gi|110682869|gb|ABG86239.1| putative ferredoxin [Clostridium perfringens SM101]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A   +
Sbjct: 14 MAYKILDTCVSC--GACAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGAPVQE 69


>gi|94969628|ref|YP_591676.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551678|gb|ABF41602.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 261

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    C  VCPV    + E    I     C+ C  C   CP    K + E  L  
Sbjct: 60  CQHCLEPACASVCPVGALQKTEIGPVIYEEHRCMGCRYCMAACPFGVPKYEWEKPLPQ 117


>gi|51473963|ref|YP_067720.1| NADH dehydrogenase subunit I [Rickettsia typhi str. Wilmington]
 gi|81389938|sp|Q68VV4|NUOI_RICTY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|51460275|gb|AAU04238.1| NADH dehydrogenase (ubiquinone) subunit I [Rickettsia typhi str.
           Wilmington]
          Length = 159

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 38/110 (34%), Gaps = 25/110 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAVCPAQAIVIESDERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV-KQKYEK 102
                         N E+A  T    I  K+  L +  K +     K  K
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKERLLYNGDKWEQELTNKLHK 154


>gi|15899480|ref|NP_344085.1| hypothetical protein SSO2764 [Sulfolobus solfataricus P2]
 gi|284174272|ref|ZP_06388241.1| hypothetical protein Ssol98_06387 [Sulfolobus solfataricus 98/2]
 gi|13816099|gb|AAK42875.1| Hypothetical protein SSO2764 [Sulfolobus solfataricus P2]
 gi|261601251|gb|ACX90854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 627

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCASACPVGITDMRGWFIKKGEFKSFKCVGLGECVNACPYDNIFFYDVRHWIK 622


>gi|327400970|ref|YP_004341809.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316478|gb|AEA47094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 127

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
             E CI C    C+ +CPV+     GE  + I+  +CI CG C   CPV A+
Sbjct: 75  DEEKCIHC--GACISICPVEAIELNGEKKVVINASKCIHCGNCVNVCPVKAL 124


>gi|300901520|ref|ZP_07119591.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 198-1]
 gi|284921593|emb|CBG34665.1| putative oxidoreductase Fe-S subunit [Escherichia coli 042]
 gi|300355050|gb|EFJ70920.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 198-1]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|290955634|ref|YP_003486816.1| nitrate reductase subunit beta NarH2 [Streptomyces scabiei 87.22]
 gi|260645160|emb|CBG68246.1| nitrate reductase beta chain NarH2 [Streptomyces scabiei 87.22]
          Length = 509

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   + 
Sbjct: 183 CEHCLNPACVSACPSGALYKRVEDGIVLVDQDRCRGWRMCVTACPYKKVY 232


>gi|157161136|ref|YP_001458454.1| iron-sulfur cluster-binding protein [Escherichia coli HS]
 gi|157066816|gb|ABV06071.1| iron-sulfur cluster-binding protein [Escherichia coli HS]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWHDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|16765849|ref|NP_461464.1| anaerobic dimethylsulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167549449|ref|ZP_02343208.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991839|ref|ZP_02572938.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232098|ref|ZP_02657156.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238267|ref|ZP_02663325.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168261431|ref|ZP_02683404.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168821495|ref|ZP_02833495.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194472364|ref|ZP_03078348.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736835|ref|YP_002115591.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197262818|ref|ZP_03162892.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200387777|ref|ZP_03214389.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|224582934|ref|YP_002636732.1| anaerobic dimethylsulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912649|ref|ZP_04656486.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16421073|gb|AAL21423.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194458728|gb|EDX47567.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712337|gb|ACF91558.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197241073|gb|EDY23693.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288856|gb|EDY28229.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604875|gb|EDZ03420.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205325458|gb|EDZ13297.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329844|gb|EDZ16608.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333568|gb|EDZ20332.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341968|gb|EDZ28732.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349653|gb|EDZ36284.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224467461|gb|ACN45291.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261247725|emb|CBG25553.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994648|gb|ACY89533.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159078|emb|CBW18592.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913516|dbj|BAJ37490.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087025|emb|CBY96794.1| Formate dehydrogenase, iron-sulfur subunit Formate dehydrogenase
           subunit beta; FDH subunit beta [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222770|gb|EFX47841.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323130857|gb|ADX18287.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989456|gb|AEF08439.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|119386940|ref|YP_917995.1| nitrate reductase, beta subunit [Paracoccus denitrificans PD1222]
 gi|119377535|gb|ABL72299.1| respiratory nitrate reductase beta subunit [Paracoccus
           denitrificans PD1222]
          Length = 505

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGVVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|300987856|ref|ZP_07178407.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 200-1]
 gi|300306004|gb|EFJ60524.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 200-1]
 gi|324011433|gb|EGB80652.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 60-1]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIK--PD 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQENKYY 213


>gi|297618232|ref|YP_003703391.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297146069|gb|ADI02826.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 58

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+YV+T+ C+ C    CV+ CPV    E E+   I P+ C +CG C   CP  A
Sbjct: 1  MSYVITDECVAC--GVCVDECPVGAITEHEDKYIIDPELCTECGSCVDACPTGA 52


>gi|317154974|ref|YP_004123022.1| hypothetical protein Daes_3288 [Desulfovibrio aespoeensis Aspo-2]
 gi|316945225|gb|ADU64276.1| Protein of unknown function DUF2088 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 370

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ENC  C    C+  C             I  + + C+ CG C   C  DA+  + + G++
Sbjct: 193 ENCTGC--GSCLLACKTQALSLDAETGRIALNAERCVGCGGCFVACRFDALNVNWKIGIQ 250

Query: 65  LWLKINSEYATQWPNITTKKESL 87
            +L+   EYA      T +K  L
Sbjct: 251 EFLERMMEYA-LAVVRTKRKPCL 272


>gi|194431782|ref|ZP_03064073.1| hydrogenase-2 electron transfer subunit [Shigella dysenteriae 1012]
 gi|194420138|gb|EDX36216.1| hydrogenase-2 electron transfer subunit [Shigella dysenteriae 1012]
 gi|332088503|gb|EGI93620.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella dysenteriae 155-74]
          Length = 328

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|153001066|ref|YP_001366747.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151365684|gb|ABS08684.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 181

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
            C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP DA+    + 
Sbjct: 60  ACMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYDAVSIREDD 114


>gi|82543961|ref|YP_407908.1| oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
 gi|81245372|gb|ABB66080.1| putative oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLEKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|256372222|ref|YP_003110046.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008806|gb|ACU54373.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidimicrobium ferrooxidans DSM 10331]
          Length = 762

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
          V+T+ C  C   +C+  CPV+      +   +      C+ C  CE  CP DAI    +P
Sbjct: 8  VLTDRCAGC--QECLIRCPVEAIDLDLDRYVVTVDSARCVGCRQCERVCPFDAIVVAGDP 65

Query: 62 G 62
           
Sbjct: 66 Q 66


>gi|332666785|ref|YP_004449573.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335599|gb|AEE52700.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 1090

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C  VCPV+   +  E    +  + CI    C   CP    + +        +
Sbjct: 905 CQHCDNAPCENVCPVNATNHSSEGLNQMSYNRCIGTRYCANNCPYKVRRFNWLDYTTADI 964

Query: 68  K-INSEY 73
             IN  Y
Sbjct: 965 FPINENY 971


>gi|306820590|ref|ZP_07454220.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551371|gb|EFM39332.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 56

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ +NCI C    C   CPV    +G+    I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIHDNCISC--GACEPECPVGAISQGDTQYIIDASACIDCGACASVCPVDAPQPE 56


>gi|295097939|emb|CBK87029.1| DMSO reductase, iron-sulfur subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|288934133|ref|YP_003438192.1| glutamate synthase, small subunit [Klebsiella variicola At-22]
 gi|288888862|gb|ADC57180.1| glutamate synthase, small subunit [Klebsiella variicola At-22]
          Length = 660

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   CV  CP D   +  + + +  ++CI C  C   CP   ++    P 
Sbjct: 56  CRHCEDAPCVRSCPNDAIAQSGDSVQVSQEKCIGCKSCMVACPFGVMQVVVTPQ 109


>gi|238759103|ref|ZP_04620272.1| Hydrogenase-2 operon protein hybA [Yersinia aldovae ATCC 35236]
 gi|238702651|gb|EEP95199.1| Hydrogenase-2 operon protein hybA [Yersinia aldovae ATCC 35236]
          Length = 329

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D    
Sbjct: 100 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYDYHNP 159

Query: 63  LEL 65
              
Sbjct: 160 FGK 162


>gi|198433064|ref|XP_002131912.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 23 kDa subunit) (Complex I-23kD)
           (CI-23kD) (TYKY subunit) [Ciona intestinalis]
          Length = 208

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 106 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 163

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  K +  
Sbjct: 164 VEGP----------NFEYSTDTHEELLYNKEKLLDNGDKWETE 196


>gi|197287384|ref|YP_002153256.1| electron transport protein [Proteus mirabilis HI4320]
 gi|194684871|emb|CAR47013.1| electron transport protein [Proteus mirabilis HI4320]
          Length = 185

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +++  +  D+CI C  C   CP   ++  + P +     
Sbjct: 62  CHQCEDAPCANVCPNGAIIHNKDYYYVDQDKCIGCKTCVLACPYGTMEVVSRPVMRKLTA 121

Query: 69  INS 71
           +N+
Sbjct: 122 LNT 124


>gi|204929695|ref|ZP_03220769.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321414|gb|EDZ06614.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|157373499|ref|YP_001472099.1| anaerobic dimethyl sulfoxide reductase, subunit B [Shewanella
           sediminis HAW-EB3]
 gi|157315873|gb|ABV34971.1| anaerobic dimethyl sulfoxide reductase, subunit B [Shewanella
           sediminis HAW-EB3]
          Length = 205

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y  + +C  C    C + CP    ++   +  + IH D CI C  CE  CP DA + D 
Sbjct: 59  AYYTSISCNHCDTPACTKACPTGAMHKRSEDGLVMIHDDICIGCSSCEQACPYDAPQLDE 118


>gi|125556583|gb|EAZ02189.1| hypothetical protein OsI_24281 [Oryza sativa Indica Group]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|91772648|ref|YP_565340.1| nitrite and sulphite reductase [Methanococcoides burtonii DSM 6242]
 gi|91711663|gb|ABE51590.1| coenzyme F420-dependent sulfite reductase [Methanococcoides
           burtonii DSM 6242]
          Length = 639

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE C  C    C E+C ++          I  D CI+CG C   CP +A   + + G 
Sbjct: 514 VDTEKCTGC--GRCSELCKLNAISVISGKAVIDRDLCINCGWCVRGCPHEA-AVEDQKGY 570

Query: 64  ELWLKIN 70
            +W+  N
Sbjct: 571 SVWIGGN 577


>gi|327401016|ref|YP_004341855.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Archaeoglobus veneficus SNP6]
 gi|327316524|gb|AEA47140.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Archaeoglobus veneficus SNP6]
          Length = 621

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + VT++C LC        CP    Y       I    CI CGVC   CP  AI
Sbjct: 566 PFTVTDDCNLCMKCVTEFACP--ALYVINGKPVIDAALCIACGVCSRICPEKAI 617


>gi|251792563|ref|YP_003007289.1| hydrogenase 2 protein HybA [Aggregatibacter aphrophilus NJ8700]
 gi|247533956|gb|ACS97202.1| HybA protein [Aggregatibacter aphrophilus NJ8700]
          Length = 346

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +  
Sbjct: 107 IKKQCMHCVDPNCVAVCPVQALTKDPKTGIVKYDPDICTGCRYCMVGCPFDVPKYDYDNP 166

Query: 63  LEL 65
              
Sbjct: 167 FGE 169


>gi|163752011|ref|ZP_02159221.1| putative anaerobic reductase component [Shewanella benthica KT99]
 gi|161328116|gb|EDP99284.1| putative anaerobic reductase component [Shewanella benthica KT99]
          Length = 181

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A+    + 
Sbjct: 60  SCMHCENPACLMVCPTKAYHVRDDGIVVLDREKCTGCGLCVSACPYSAVNIREDD 114


>gi|30063184|ref|NP_837355.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|30041436|gb|AAP17164.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPY 153



 Score = 33.8 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYLVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|329941704|ref|ZP_08290969.1| nitrate reductase subunit beta NarH2 [Streptomyces
           griseoaurantiacus M045]
 gi|329299421|gb|EGG43321.1| nitrate reductase subunit beta NarH2 [Streptomyces
           griseoaurantiacus M045]
          Length = 511

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   + 
Sbjct: 183 CEHCLNPACVSACPSGAMYKRVEDGIVLVDQDRCRGWRMCVTACPYKKVY 232


>gi|126739780|ref|ZP_01755471.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126719012|gb|EBA15723.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 653

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C    C++ CP        + + I P  C  CG C   CP  AI  D  P   L+L++
Sbjct: 277 GCSK--CLDHCPTSAISPKGDHVTIDPMICAGCGACASLCPSGAITYDAPPASALFLRV 333



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + TE+C LC    C  +CP            L    D C+ CG+C   CP  AIK +
Sbjct: 500 IDTESCTLCL--SCASLCPSGALGDNPDLPQLRFQEDACLQCGICANLCPEQAIKLE 554


>gi|121535135|ref|ZP_01666951.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306244|gb|EAX47170.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 462

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 6   TENCILCKHTD--CVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            + C  C   D  C + CPV      E   L I+ ++CI  G C   C   A+  
Sbjct: 91  PDACRSCPEGDRACEKACPVAAITRDELGRLRINYEKCIGDGHCVDVCDFGALAH 145


>gi|15893595|ref|NP_346944.1| ferredoxin [Clostridium acetobutylicum ATCC 824]
 gi|15023146|gb|AAK78284.1|AE007545_1 Ferredoxin [Clostridium acetobutylicum ATCC 824]
 gi|325507715|gb|ADZ19351.1| Ferredoxin [Clostridium acetobutylicum EA 2018]
          Length = 56

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C   CPV    +G+    I  D CI+CG C   CPV A   +
Sbjct: 1  MAYKITDACVSC--GSCASECPVSAISQGDTQFVIDADTCIECGNCANVCPVGAPVQE 56


>gi|20092251|ref|NP_618326.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A]
 gi|19917487|gb|AAM06806.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A]
          Length = 288

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ ENC+ CK   C + C V      ++ + I  ++CI CG C   C  DA++ +
Sbjct: 166 ILEENCVGCKL--CEKACKVGAITVLDDKIRIDLEKCILCGACIAACRKDALRAE 218


>gi|146295766|ref|YP_001179537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409342|gb|ABP66346.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 373

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + T  C+ C    CV+ C         +    I  ++C+ CG C   C  +A     +
Sbjct: 189 PVIKTSKCVGC--GMCVKSCAQFAITLSEKKKAVIDYEKCVGCGQCVAVCQFEAATVRWD 246

Query: 61  PGLELWLKINSEYA 74
               +  +  +EYA
Sbjct: 247 EAASIASEKIAEYA 260


>gi|330809997|ref|YP_004354459.1| nitrate reductase, Respiratory nitrate reductase 2 subunit beta
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327378105|gb|AEA69455.1| Nitrate reductase, Respiratory nitrate reductase 2 beta chain
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 512

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|300853352|ref|YP_003778336.1| ferredoxin [Clostridium ljungdahlii DSM 13528]
 gi|300433467|gb|ADK13234.1| ferredoxin [Clostridium ljungdahlii DSM 13528]
          Length = 57

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +TE+C+ C    C   CP D   +G++   I P++CI+CG C   CPV A   ++
Sbjct: 1  MAYKITEDCVSC--GSCASECPADAISQGDSQFVIDPEKCIECGNCANVCPVGAPVEES 57


>gi|262193410|ref|YP_003264619.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262076757|gb|ACY12726.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 840

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD---TEPG 62
           + C+ C    CV VCP +      N    +   +CI C  C   CP +A+      TEP 
Sbjct: 41  DRCVGCD--ACVAVCPTNVLDLISNKSRVLRFQDCIQCEQCMWACPTEALVMHLEGTEPP 98

Query: 63  LELWLKINSEY 73
                 IN  +
Sbjct: 99  RIKMPDINENF 109


>gi|227358376|ref|ZP_03842716.1| electron transport protein [Proteus mirabilis ATCC 29906]
 gi|227161412|gb|EEI46456.1| electron transport protein [Proteus mirabilis ATCC 29906]
          Length = 186

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +++  +  D+CI C  C   CP   ++  + P +     
Sbjct: 63  CHQCEDAPCANVCPNGAIIHNKDYYYVDQDKCIGCKTCVLACPYGTMEVVSRPVMRKLTA 122

Query: 69  INS 71
           +N+
Sbjct: 123 LNT 125


>gi|254166732|ref|ZP_04873586.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|289596500|ref|YP_003483196.1| Cobyrinic acid ac-diamide synthase [Aciduliprofundum boonei T469]
 gi|197624342|gb|EDY36903.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|289534287|gb|ADD08634.1| Cobyrinic acid ac-diamide synthase [Aciduliprofundum boonei T469]
          Length = 292

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP-VDAIKPDTEPGL 63
           +T+ CI C    C  +C  +  Y       I    C  CG C+  CP  DAI  D    +
Sbjct: 65  ITDKCINC--GVCDNICIYEAIYIENGQHKIKEYLCEGCGACKAVCPVEDAIIID--DTV 120

Query: 64  ELWLKI-NSEY 73
             W++I N++Y
Sbjct: 121 SGWIRIANTKY 131


>gi|198244744|ref|YP_002216593.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205353628|ref|YP_002227429.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857937|ref|YP_002244588.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197939260|gb|ACH76593.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205273409|emb|CAR38384.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206709740|emb|CAR34092.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326624349|gb|EGE30694.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628728|gb|EGE35071.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|156934092|ref|YP_001438008.1| hypothetical protein ESA_01918 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532346|gb|ABU77172.1| hypothetical protein ESA_01918 [Cronobacter sakazakii ATCC BAA-894]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C   CP    ++  G+  + ++ D+C+ CG C   CP  A + +T
Sbjct: 71  AYTLSISCNHCADPICTRNCPTTAMHKRDGDGIVRVNTDKCVGCGYCAWSCPYGAPQRNT 130

Query: 60  EPGLE 64
           + G  
Sbjct: 131 QTGQM 135


>gi|149176958|ref|ZP_01855567.1| ferredoxin [Planctomyces maris DSM 8797]
 gi|148844213|gb|EDL58567.1| ferredoxin [Planctomyces maris DSM 8797]
          Length = 61

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPS 89
           + I+PDECIDC  C PECPV+AI  +       + + +IN++ + + P IT KKE L  
Sbjct: 1  MVYINPDECIDCEACVPECPVEAIFHEDNVPEKWQEYTQINADKSQELPVITEKKEPLAD 60


>gi|114319377|ref|YP_741060.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225771|gb|ABI55570.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 249

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C+ C+   CV VCP    Y+  +    + +  ++CI C  C   CP        E
Sbjct: 57  PCMQCEDPSCVHVCPTRATYKDPDAGGIVFVDWNKCIGCKYCMIACPYGVRFYADE 112


>gi|119776035|ref|YP_928775.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Shewanella
           amazonensis SB2B]
 gi|119768535|gb|ABM01106.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Shewanella
           amazonensis SB2B]
          Length = 230

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV VCP    Y  +    +A++ D C+ C  C   CP        E
Sbjct: 98  SCQHCEAAPCVRVCPTGAAYIDKETGIVAVNSDRCVGCQYCIAACPYQVRYIHPE 152


>gi|119355989|ref|YP_910633.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119353338|gb|ABL64209.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Chlorobium phaeobacteroides DSM 266]
          Length = 258

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C  + C + CP +  ++  + +  +    CI C  C   CP  +   + +  
Sbjct: 120 CNHCAESPCTKACPTEATFKRWDGIVAMDYHRCIGCRFCMAACPYGSRSFNWQDP 174


>gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16]
 gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16]
          Length = 626

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C++ CP+D           I  ++CI CG C   CP  AI+ +
Sbjct: 573 IDPELCKGC--GKCMKQCPMDAISGQIRMPHVIDTEKCIKCGACWGCCPFGAIREE 626


>gi|261340825|ref|ZP_05968683.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317251|gb|EFC56189.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|161870852|ref|YP_001600026.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis 053442]
 gi|161596405|gb|ABX74065.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis 053442]
          Length = 279

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+ VCP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRVCPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|92114035|ref|YP_573963.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91797125|gb|ABE59264.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 552

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPGLELWL 67
            C  T C++VCP D     +  + I P  C   G C   CP  AI+    T   L+ ++
Sbjct: 192 GC--TRCLDVCPADAISSVKQEIVIDPFRCHGAGSCTSACPTGAIRYALPTPERLDDYI 248



 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           + T+NC LC    CV VCP           A++  E  C+ CG+CE  CP   I
Sbjct: 415 IDTDNCTLC--MACVAVCPTQALSSPGQSPALNFQESACVQCGLCETACPEQVI 466


>gi|255021484|ref|ZP_05293529.1| Anaerobic dimethyl sulfoxide reductase chain B [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969067|gb|EET26584.1| Anaerobic dimethyl sulfoxide reductase chain B [Acidithiobacillus
           caldus ATCC 51756]
          Length = 230

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C++ +CV VCP    Y+   +  + +   +C+ C  C   CP  A + D
Sbjct: 71  SCMHCENAECVTVCPTGASYKRAEDGIVLVDQSKCMGCNYCSWACPYGARELD 123


>gi|125974593|ref|YP_001038503.1| 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium thermocellum
          ATCC 27405]
 gi|125714818|gb|ABN53310.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
          thermocellum ATCC 27405]
          Length = 60

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA
Sbjct: 5  MAYFITDACISC--GACESECPVSCISPGDSVYVIDADACIECGACANVCPVDA 56


>gi|116623297|ref|YP_825453.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226459|gb|ABJ85168.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 247

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C+   C  VCPV    +          D+C+ C  C   CP      +    L    
Sbjct: 60  CMNCQQPACASVCPVGALQKTALGPVTYDADKCMGCRYCMQACPFQVPSYEWNQRLPKMR 119

Query: 68  KINSEY 73
           K N  Y
Sbjct: 120 KCNMCY 125


>gi|323701707|ref|ZP_08113378.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323533243|gb|EGB23111.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 92

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          Y +T  C  C    C +VCP    Y  E+   I+   C  CG C   CP  AI  +T+  
Sbjct: 7  YFITNKCKNC--AQCQDVCPEKAIYAAEDKYCINDARCNGCGSCVEICPEQAIVKETD-- 62

Query: 63 LELWLKINSE 72
             +  IN E
Sbjct: 63 --HFRIINRE 70


>gi|302384752|ref|YP_003820574.1| ferredoxin [Clostridium saccharolyticum WM1]
 gi|302195380|gb|ADL02951.1| ferredoxin [Clostridium saccharolyticum WM1]
          Length = 56

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+++ C+ C    C   CPV    +G++   I  D CIDCG CE  CP  AI
Sbjct: 1  MARVISDACVSC--GSCEAECPVSAISQGDSQFVIDADTCIDCGACEGVCPTGAI 53


>gi|298376335|ref|ZP_06986291.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267372|gb|EFI09029.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 262

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                + C  C++  CV+VCP       +  +   P++CI C  C  ECP  A   DT  
Sbjct: 187 PVTDNDLCTQCEY--CVDVCPTHAISLADEGMYSDPNQCIKCCACVKECPEGARTFDTPY 244

Query: 62  GLE 64
              
Sbjct: 245 TAM 247


>gi|295107126|emb|CBL04669.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 216

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C+ VCP     + ++ +  +    CI C  C   CP D ++       E +L
Sbjct: 74  CQHCGNPPCLGVCPTGATKKRDDGIVYVDNSLCIGCRACVMACPYDHVRSMNGGAPEYYL 133

Query: 68  KI 69
            +
Sbjct: 134 DV 135


>gi|118581974|ref|YP_903224.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118504684|gb|ABL01167.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 367

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C  C    C++ C  D     +    I   +C  C  C   CPV AI+     
Sbjct: 187 PVVSAKACTGC--GFCLKSCAHDAIAINDGIAYIDALKCAGCSRCISVCPVRAIQVQWNE 244

Query: 62  GLELWLKINSEYAT 75
             +L ++  +EYA 
Sbjct: 245 AADLVMRKMAEYAR 258


>gi|332249710|ref|XP_003274000.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Nomascus leucogenys]
          Length = 217

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 205


>gi|257792589|ref|YP_003183195.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476486|gb|ACV56806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 213

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    CV+ CP  C +  +  + +HPD+CI C  C   CP  A++  TE     
Sbjct: 58  CHHCAEAPCVDACPTGCLFTDDEHVGVHPDKCIGCRNCVLACPYGAVEIVTEKLPPE 114


>gi|24113059|ref|NP_707569.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|24052030|gb|AAN43276.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPY 153



 Score = 33.8 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYLVRYLNPVTKVADKCDFCAESRLEKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|46195430|ref|NP_659119.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Mus musculus]
 gi|47117242|sp|Q8K3J1|NDUS8_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|22074762|gb|AAM34451.1| NADH dehydrogenase:ubiquinone Fe-S protein 8 [Mus musculus]
 gi|56540975|gb|AAH86766.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Mus musculus]
 gi|74139889|dbj|BAE31784.1| unnamed protein product [Mus musculus]
 gi|74150399|dbj|BAE32243.1| unnamed protein product [Mus musculus]
 gi|74204045|dbj|BAE29018.1| unnamed protein product [Mus musculus]
 gi|74204318|dbj|BAE39914.1| unnamed protein product [Mus musculus]
 gi|74227922|dbj|BAE37960.1| unnamed protein product [Mus musculus]
 gi|148701022|gb|EDL32969.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, isoform CRA_a [Mus
           musculus]
 gi|148701023|gb|EDL32970.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, isoform CRA_a [Mus
           musculus]
          Length = 212

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 168 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 200


>gi|114571249|ref|YP_757929.1| respiratory nitrate reductase beta subunit [Maricaulis maris MCS10]
 gi|114341711|gb|ABI66991.1| respiratory nitrate reductase beta subunit [Maricaulis maris MCS10]
          Length = 508

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCAAACPSGAIYKREEDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|114046018|ref|YP_736568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113887460|gb|ABI41511.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 188

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHSDKCVGCMYCVAACPYKVRFMNPE 112


>gi|300957169|ref|ZP_07169404.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300316013|gb|EFJ65797.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
          Length = 213

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|284434569|gb|ADB85312.1| putative NADH-ubiquinone [Phyllostachys edulis]
          Length = 221

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 119 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 176

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 177 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 209


>gi|288941047|ref|YP_003443287.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Allochromatium vinosum DSM 180]
 gi|288896419|gb|ADC62255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Allochromatium vinosum DSM 180]
          Length = 205

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  C+ VCP     +  N +  +  + C+ CG C   CP  A
Sbjct: 61  CNHCDNPPCMTVCPTGATQKKANGIVFVDQELCMGCGACAMACPYHA 107


>gi|163749866|ref|ZP_02157111.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
 gi|161330380|gb|EDQ01359.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
          Length = 196

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP DCFY  E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPADCFYRTEDGIVLHNKDTCIGCGYCLYACPFGA 103


>gi|315180297|gb|ADT87211.1| hydrogenase 4 Fe-S subunit [Vibrio furnissii NCTC 11218]
          Length = 201

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C  VCPV    + E+ + +    CI C +C   CP  AI  D
Sbjct: 51  CRHCEDAPCATVCPVHAIKKEEDRILLQETLCIGCTLCAVACPFGAIALD 100


>gi|304436550|ref|ZP_07396520.1| anaerobic dimethyl sulfoxide reductase subunit B [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370420|gb|EFM24075.1| anaerobic dimethyl sulfoxide reductase subunit B [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 191

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           V+  C  C    C++ CP   + + ++ + +   D CI C +C   CP      D
Sbjct: 58  VSLACNHCDAPSCMKACPTSAYSKRDDGIVMHDQDRCIGCKLCMMACPYRVPCFD 112


>gi|317056017|ref|YP_004104484.1| ferredoxin [Ruminococcus albus 7]
 gi|315448286|gb|ADU21850.1| ferredoxin [Ruminococcus albus 7]
          Length = 56

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPV    EG+    I    C+DCG C   CPV A + +
Sbjct: 1  MAYKISDDCIGC--GACAAECPVGAISEGDGKYVIDASACLDCGACAGTCPVGAPQAE 56


>gi|303230023|ref|ZP_07316797.1| nitrate reductase, beta subunit [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231027|ref|ZP_07317769.1| nitrate reductase, beta subunit [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514291|gb|EFL56291.1| nitrate reductase, beta subunit [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515389|gb|EFL57357.1| nitrate reductase, beta subunit [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 475

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C P CP   I  + E     
Sbjct: 181 CNHCLNPACVAACPSGAIYKRDEDGVVLVSQDVCRGWRHCVPSCPYKKIFYNWETNKAE 239


>gi|284165758|ref|YP_003404037.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284015413|gb|ADB61364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 532

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C    C +VCP    +  ++   +      CI C  C+  CP        +     
Sbjct: 205 PCQHCTDAPCEKVCPTTARHTRDSDGLVLTDYGVCIGCRYCQVACPYGVNYFQWDEPEVP 264

Query: 66  WLKI 69
             ++
Sbjct: 265 ESEL 268


>gi|294656335|ref|XP_458595.2| DEHA2D02948p [Debaryomyces hansenii CBS767]
 gi|199431392|emb|CAG86730.2| DEHA2D02948p [Debaryomyces hansenii]
          Length = 243

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 141 EERCIACKL--CEAICPAQAITIEAEERMDGSRRTVKYDIDMTKCIYCGYCQDSCPVDAI 198

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N EY+T+     +  K++ L +  K +  
Sbjct: 199 VESP----------NVEYSTETREELLYNKEKLLENGDKWEQE 231


>gi|167551945|ref|ZP_02345698.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323310|gb|EDZ11149.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|159035866|ref|YP_001535119.1| nitrate reductase, beta subunit [Salinispora arenicola CNS-205]
 gi|157914701|gb|ABV96128.1| nitrate reductase, beta subunit [Salinispora arenicola CNS-205]
          Length = 539

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CP    Y+ E    + +  D C    +C   CP   + 
Sbjct: 187 CEHCLNPACVSACPSGAMYKREEDGIVLVDQDRCRGWRMCVSACPYKKVY 236


>gi|83855221|ref|ZP_00948751.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
 gi|83843064|gb|EAP82231.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
          Length = 650

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C+++CP          +AI P  C  CG C   CP  AI  D  P   L+ ++
Sbjct: 282 CLDLCPTGAITSAGEHVAIDPMICAGCGSCSAVCPSGAITYDAPPVDTLFRRL 334



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP            L    D C+ CG+C   CP +AI
Sbjct: 497 VDTDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPENAI 548


>gi|238793374|ref|ZP_04637000.1| hypothetical protein yinte0001_34690 [Yersinia intermedia ATCC
           29909]
 gi|238727343|gb|EEQ18871.1| hypothetical protein yinte0001_34690 [Yersinia intermedia ATCC
           29909]
          Length = 674

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 24/65 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE       +
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSVQVIQEKCIGCKTCMIACPFGMMTVVTETVQPASHR 115

Query: 69  INSEY 73
           +   Y
Sbjct: 116 LADAY 120


>gi|260434027|ref|ZP_05787998.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417855|gb|EEX11114.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 651

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C +  C+++CP        + +AI P  C  CG C   CP  AI  +  P
Sbjct: 277 VGCSN--CLDICPTGAITPAGDHVAIDPMVCAGCGECAALCPSTAISYEDPP 326



 Score = 41.1 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
           V TE C LC    CV +CP     +  +   ++  +  C+ CG+C+  CP  AI    E
Sbjct: 498 VDTEACTLCL--SCVSLCPSGALIDNPDLPQLNYQQDACLQCGLCKTICPESAITLVPE 554


>gi|225166802|ref|YP_002650787.1| putative dihydroorotate dehydrogenase family protein [Clostridium
           botulinum]
 gi|253771334|ref|YP_003034159.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           D str. 1873]
 gi|225007466|dbj|BAH29562.1| putative dihydroorotate dehydrogenase family protein [Clostridium
           botulinum]
 gi|253721311|gb|ACT33604.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           D str. 1873]
          Length = 362

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  + CI C    C  VCP     + +  + +   +C  CG+CE +CPVDAI
Sbjct: 306 PVIDEDKCIKC--GVCERVCPYFAL-KLKEKINVDTTKCFGCGLCESKCPVDAI 356


>gi|167761785|ref|ZP_02433912.1| hypothetical protein BACSTE_00125 [Bacteroides stercoris ATCC
          43183]
 gi|167700291|gb|EDS16870.1| hypothetical protein BACSTE_00125 [Bacteroides stercoris ATCC
          43183]
          Length = 70

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+   +I P+ C +CG C   CP +AI P
Sbjct: 15 MAYVISDDCIAC--GTCIDECPVGAISEGD-IYSIDPETCTECGTCADVCPSEAIHP 68


>gi|134299396|ref|YP_001112892.1| electron transfer flavoprotein subunit beta [Desulfotomaculum
          reducens MI-1]
 gi|134052096|gb|ABO50067.1| electron transfer flavoprotein beta-subunit [Desulfotomaculum
          reducens MI-1]
          Length = 439

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
          M   V+  C+ C    C+  CP +  +  +  +  + P++C+DCG C   CPV+A+
Sbjct: 1  MAVKVSSACMGC--QACITSCPHEALFMNDAGVCQVIPEKCVDCGECVEVCPVEAL 54


>gi|194336021|ref|YP_002017815.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308498|gb|ACF43198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 188

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C +  CV  CP    +  EN    I+   C  C  C   CP DA     +  ++
Sbjct: 58  SERCQHCDNAPCVTYCPTGASHYDENGTVQINRSRCTGCKACMAACPYDARYVHPDGFID 117

Query: 65  L 65
            
Sbjct: 118 K 118


>gi|324516961|gb|ADY46687.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 [Ascaris
           suum]
          Length = 207

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 105 EERCIACKL--CEAICPAQAITIEAEERPDGSRRTTRYDIDMTKCIFCGLCQEACPVDAI 162

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    I  K++ L +  + +  
Sbjct: 163 VEGP----------NFEFSTETHEELIYNKEKLLLNGDRWEPE 195


>gi|323170275|gb|EFZ55928.1| protein aegA [Escherichia coli LT-68]
          Length = 604

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 51  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 103


>gi|331664613|ref|ZP_08365519.1| hydrogenase-2 operon protein HybA [Escherichia coli TA143]
 gi|331058544|gb|EGI30525.1| hydrogenase-2 operon protein HybA [Escherichia coli TA143]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|295111540|emb|CBL28290.1| electron transport complex, RnfABCDGE type, B subunit
           [Synergistetes bacterium SGP1]
          Length = 277

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C  VCP        +   I P +C +CG+C  +CP   I
Sbjct: 220 CIGC--GLCARVCPAGAITMDRDLAVIDPAKCTNCGLCAQKCPAKCI 264



 Score = 38.8 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 18/75 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF----------------YEGENFLAIHPDECIDCGV 45
             V  E C+ C    CV  CP D                  ++G     +    CI CG+
Sbjct: 168 PVVDREQCVGC--GACVSACPKDVLTLIPQTSDVVVACGSHWKGPAVRRVCSIGCIGCGL 225

Query: 46  CEPECPVDAIKPDTE 60
           C   CP  AI  D +
Sbjct: 226 CARVCPAGAITMDRD 240



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           CI      C +VC  D  + G + L  +  ++C+ CG C   CP
Sbjct: 145 CIG--FGTCTKVCNFDAIFMGPDGLPVVDREQCVGCGACVSACP 186


>gi|254168947|ref|ZP_04875786.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|197622053|gb|EDY34629.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
          Length = 292

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP-VDAIKPDTEPGL 63
           +T+ CI C    C  +C  +  Y       I    C  CG C+  CP  DAI  D    +
Sbjct: 65  ITDKCINC--GVCDNICIYEAIYIESGQHKIKEYLCEGCGACKAVCPVEDAIIID--DTV 120

Query: 64  ELWLKI-NSEY 73
             W++I N++Y
Sbjct: 121 SGWIRIANTKY 131


>gi|170018745|ref|YP_001723699.1| hydrogenase 2 protein HybA [Escherichia coli ATCC 8739]
 gi|312972740|ref|ZP_07786913.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 1827-70]
 gi|169753673|gb|ACA76372.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|310332682|gb|EFP99895.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 1827-70]
 gi|323941901|gb|EGB38080.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|315657013|ref|ZP_07909898.1| respiratory nitrate reductase, beta subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492405|gb|EFU82011.1| respiratory nitrate reductase, beta subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 511

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  ++C    +C   CP   +  
Sbjct: 184 CEHCLNPACVSACPGTAMYKRTEDGIVLVDQNKCRGWRMCVSACPYKKVYF 234


>gi|298251068|ref|ZP_06974872.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297549072|gb|EFH82939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 86

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+  I  K   CVEVC VDC +        E    L+I+PDECI+CG  E  CPV
Sbjct: 1  MPYVITQLYIGSKDACCVEVCLVDCIHPTPDEEEFETTEHLSINPDECIECGAUEAACPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEYATQ 76
           AI  +         ++ IN+ +  +
Sbjct: 61 TAIFEEPLVPQEWRQYIAINANFFKR 86


>gi|284165379|ref|YP_003403658.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284015034|gb|ADB60985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 446

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C    C +VCP    +  ++   +    D CI C  C+  CP        +  
Sbjct: 197 PCQHCTDAPCEKVCPTTARHTRDSDGLVLTDYDVCIGCRYCQVACPYGVNYFQWDDP 253


>gi|254471603|ref|ZP_05085005.1| nitrate reductase beta chain [Pseudovibrio sp. JE062]
 gi|211959749|gb|EEA94947.1| nitrate reductase beta chain [Pseudovibrio sp. JE062]
          Length = 239

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C    C+ VCPV+  ++ +   + +  ++C+ CG C   CP +A
Sbjct: 88  CNHCDEPPCIPVCPVNATFKTDEGAVVVDAEQCVACGYCVQACPYEA 134


>gi|209735168|gb|ACI68453.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAVCPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 166 VEGP----------NFEFATETHEELLYNKEKLLNNGDQWESE 198


>gi|167761220|ref|ZP_02433347.1| hypothetical protein CLOSCI_03625 [Clostridium scindens ATCC
          35704]
 gi|167660886|gb|EDS05016.1| hypothetical protein CLOSCI_03625 [Clostridium scindens ATCC
          35704]
          Length = 468

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C +  C++ CP            I P+ C+DCG C   CP  A
Sbjct: 22 DEDACIGCIN--CIKYCPTQAIRVHNGKAKITPEFCVDCGRCLRYCPHHA 69


>gi|82778235|ref|YP_404584.1| hydrogenase 2 protein HybA [Shigella dysenteriae Sd197]
 gi|309785172|ref|ZP_07679803.1| twin-arginine translocation pathway signal sequence domain protein
           [Shigella dysenteriae 1617]
 gi|81242383|gb|ABB63093.1| hydrogenase-2 small subunit [Shigella dysenteriae Sd197]
 gi|308926292|gb|EFP71768.1| twin-arginine translocation pathway signal sequence domain protein
           [Shigella dysenteriae 1617]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|113972052|ref|YP_735845.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886736|gb|ABI40788.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 189

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|330997031|ref|ZP_08320893.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
 gi|329571529|gb|EGG53211.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
          Length = 318

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   +CI C    CV+ CP +      N   I P++C  C  CE  CP  AI     P  
Sbjct: 219 VCKASCIGC--GKCVKTCPFEAITLNNNLAYIDPEKCKLCRKCEEACPKGAIHAINFPPR 276

Query: 64  ELWLKINSEYATQWPN 79
           +  ++  +  A   P 
Sbjct: 277 KPKVEKPTATAAPKPT 292


>gi|312968672|ref|ZP_07782881.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 2362-75]
 gi|312286890|gb|EFR14801.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 2362-75]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|312126778|ref|YP_003991652.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776797|gb|ADQ06283.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 373

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + T  C+ C    CV+ C        E     I  ++C+ CG C   C   A     +
Sbjct: 189 PVIKTSKCVGC--GMCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFGAATVKWD 246

Query: 61  PGLELWLKINSEYA 74
               +  +  +EYA
Sbjct: 247 EAASIASEKIAEYA 260


>gi|292669621|ref|ZP_06603047.1| respiratory nitrate reductase [Selenomonas noxia ATCC 43541]
 gi|292648830|gb|EFF66802.1| respiratory nitrate reductase [Selenomonas noxia ATCC 43541]
          Length = 473

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + I  D C     C P CP   I  + E     
Sbjct: 180 CNHCLNPACVAACPSGAIYKRDEDGVVLISQDGCRGWRHCVPSCPYKKIYYNWETNKAE 238


>gi|281178741|dbj|BAI55071.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE15]
          Length = 239

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQ 154



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIK--PD 58
           CI C +  C+ VCP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGVCPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQENKYY 213


>gi|262383251|ref|ZP_06076387.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301309306|ref|ZP_07215248.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|262294149|gb|EEY82081.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300832395|gb|EFK63023.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 262

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                + C  C++  CV+VCP       +  +   P+ CI C  C  ECP  A   DT  
Sbjct: 187 PVTDNDLCTQCEY--CVDVCPTHAISLADEGMYSDPNLCIKCCACVKECPEGARTFDTPY 244

Query: 62  GLE 64
              
Sbjct: 245 TAM 247


>gi|261248279|emb|CBG26116.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|237706257|ref|ZP_04536738.1| hydrogenase-2 operon protein hybA [Escherichia sp. 3_2_53FAA]
 gi|226899297|gb|EEH85556.1| hydrogenase-2 operon protein hybA [Escherichia sp. 3_2_53FAA]
 gi|323957853|gb|EGB53567.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|224584945|ref|YP_002638744.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469473|gb|ACN47303.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|254491904|ref|ZP_05105083.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224463382|gb|EEF79652.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 194

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPVDCFY  ++ +     D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCTDAPCQAVCPVDCFYTTDDGVVLHDKDICIGCGYCFYACPFGAPQY 104


>gi|164687083|ref|ZP_02211111.1| hypothetical protein CLOBAR_00709 [Clostridium bartlettii DSM
          16795]
 gi|164603968|gb|EDQ97433.1| hypothetical protein CLOBAR_00709 [Clostridium bartlettii DSM
          16795]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C + CP D    G++  +I+ DEC+DCG C   CP DAI  +
Sbjct: 12 MAYKITDECIAC--GSCADECPNDAITAGDDKYSINADECLDCGSCADACPNDAIVEE 67


>gi|148225889|ref|NP_001087331.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus laevis]
 gi|51593201|gb|AAH78569.1| MGC85457 protein [Xenopus laevis]
          Length = 207

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 24/105 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP                      I   +CI CG C+  CPVDAI
Sbjct: 105 EERCIACKL--CEAACPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 162

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQ 98
                         N E++  T    +  K++ L +  K +    
Sbjct: 163 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEVEIG 197


>gi|150390931|ref|YP_001320980.1| Fe-S cluster domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149950793|gb|ABR49321.1| Fe-S cluster domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 417

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C  T CV+ CP +     +    I   +CI CG C   C   A
Sbjct: 14 KCVGC--TRCVKNCPSEASRVRDGKSLIINTKCIHCGQCTQVCTHHA 58


>gi|322420605|ref|YP_004199828.1| hydrogenase 2 protein HybA [Geobacter sp. M18]
 gi|320126992|gb|ADW14552.1| hydrogenase 2 protein HybA [Geobacter sp. M18]
          Length = 308

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCPV    + +    +  ++  CI C  C+  CP +  K   E
Sbjct: 113 SCMHCQKPSCVSVCPVSAMTKEKITGIVDYNKNTCIGCRYCQIACPYNIPKFQWE 167


>gi|315651987|ref|ZP_07904989.1| ferredoxin [Eubacterium saburreum DSM 3986]
 gi|315485816|gb|EFU76196.1| ferredoxin [Eubacterium saburreum DSM 3986]
          Length = 55

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV    +G+    I  D CIDCG C   CP +AI
Sbjct: 1  MAYTITDKCVSC--GTCEGECPVSAISQGDTQYNIDADACIDCGTCASVCPTEAI 53


>gi|187733026|ref|YP_001880432.1| iron-sulfur cluster-binding protein [Shigella boydii CDC 3083-94]
 gi|187430018|gb|ACD09292.1| iron-sulfur cluster-binding protein [Shigella boydii CDC 3083-94]
          Length = 239

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  L  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|89901565|ref|YP_524036.1| nitrate reductase subunit beta [Rhodoferax ferrireducens T118]
 gi|89346302|gb|ABD70505.1| respiratory nitrate reductase beta subunit [Rhodoferax
           ferrireducens T118]
          Length = 507

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|83941743|ref|ZP_00954205.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
 gi|83847563|gb|EAP85438.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
          Length = 650

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C+++CP          +AI P  C  CG C   CP  AI  D  P   L+ ++
Sbjct: 282 CLDLCPTGAITSAGEHVAIDPMICAGCGSCSAVCPSGAITYDAPPVDTLFRRL 334



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP            L    D C+ CG+C   CP DAI
Sbjct: 497 VDTDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAI 548


>gi|320195146|gb|EFW69775.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           WV_060327]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|298346573|ref|YP_003719260.1| nitrate reductase [Mobiluncus curtisii ATCC 43063]
 gi|298236634|gb|ADI67766.1| nitrate reductase [Mobiluncus curtisii ATCC 43063]
          Length = 511

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  ++C    +C   CP   +  
Sbjct: 184 CEHCLNPACVSACPGTAMYKRTEDGIVLVDQNKCRGWRMCVSACPYKKVYF 234


>gi|225707568|gb|ACO09630.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Osmerus mordax]
          Length = 210

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  + +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDRWEAE 198


>gi|253699754|ref|YP_003020943.1| hydrogenase 2 protein HybA [Geobacter sp. M21]
 gi|251774604|gb|ACT17185.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 309

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCPV    + +    +  ++  CI C  C+  CP +  K   E
Sbjct: 113 SCMHCQKPSCVSVCPVSAMTKEKVSGIVDYNKNTCIGCRYCQIACPYNIPKFQWE 167


>gi|157373371|ref|YP_001471971.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           sediminis HAW-EB3]
 gi|157315745|gb|ABV34843.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           sediminis HAW-EB3]
          Length = 225

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  + CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAQELCIGCESCARACPYDAPQIDR 137

Query: 60  E 60
           E
Sbjct: 138 E 138



 Score = 33.8 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 13/72 (18%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVD 53
           +V  E CI C+   C   CP D              +C  C          VC   CP+ 
Sbjct: 112 HVAQELCIGCE--SCARACPYDAPQIDRERKV--MTKCDGCFERIAEGRKPVCVESCPLR 167

Query: 54  AIKPDTEPGLEL 65
           A+  DT   L  
Sbjct: 168 ALDFDTMDNLRA 179


>gi|145592744|ref|YP_001157041.1| nitrate reductase, beta subunit [Salinispora tropica CNB-440]
 gi|145302081|gb|ABP52663.1| respiratory nitrate reductase beta subunit [Salinispora tropica
           CNB-440]
          Length = 539

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CP    Y+ E    + +  D C    +C   CP   + 
Sbjct: 187 CEHCLNPACVSACPSGAMYKREEDGIVLVDQDRCRGWRMCVSACPYKKVY 236


>gi|313680312|ref|YP_004058051.1| respiratory nitrate reductase beta subunit [Oceanithermus profundus
           DSM 14977]
 gi|313153027|gb|ADR36878.1| respiratory nitrate reductase beta subunit [Oceanithermus profundus
           DSM 14977]
          Length = 503

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  ++ ++C    +C   CP   +  + 
Sbjct: 185 CNHCLNPACVAACPSGAIYKRGEDGVVLVNENKCKAWRMCVAACPYKKVYYNW 237


>gi|304439744|ref|ZP_07399642.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
 gi|304371731|gb|EFM25339.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
          Length = 79

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +++T+ CI C    C   CPV+C  EG     I  D+CIDCG C   CP  A +P+
Sbjct: 24 MAHIITDACIAC--GACQPECPVNCISEG-AIYEIDQDQCIDCGACSSVCPTGAAQPE 78


>gi|303244235|ref|ZP_07330572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
 gi|302485362|gb|EFL48289.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
          Length = 170

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C    C EVCPV+     +  + +   +CI CG+C   CP  AI  
Sbjct: 44 CQHCASAPCKEVCPVEAIENKDGVIYLDESKCIGCGLCAMACPFGAITM 92


>gi|261494021|ref|ZP_05990524.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496220|ref|ZP_05992626.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308172|gb|EEY09469.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310187|gb|EEY11387.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 205

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +V+ + CI C  T C++ CPVD      +    I PD C  C +C   CP + I+ 
Sbjct: 109 AFVIEDLCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNCIEM 163


>gi|317053381|ref|YP_004119148.1| glutamate synthase, small subunit [Pantoea sp. At-9b]
 gi|316953120|gb|ADU72592.1| glutamate synthase, small subunit [Pantoea sp. At-9b]
          Length = 659

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          C  C+   C   CP       ++ + +    CI C  C   CP 
Sbjct: 56 CHHCEDAPCARSCPNGAINRIDDSVQVDQQLCIGCKSCVIACPF 99


>gi|256841600|ref|ZP_05547107.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737443|gb|EEU50770.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 262

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                + C  C++  CV+VCP       +  +   P+ CI C  C  ECP  A   DT  
Sbjct: 187 PVTDNDLCTQCEY--CVDVCPTHAISLADEGMYSDPNLCIKCCACVKECPEGARTFDTPY 244

Query: 62  GLE 64
              
Sbjct: 245 TAM 247


>gi|226327835|ref|ZP_03803353.1| hypothetical protein PROPEN_01712 [Proteus penneri ATCC 35198]
 gi|225203539|gb|EEG85893.1| hypothetical protein PROPEN_01712 [Proteus penneri ATCC 35198]
          Length = 206

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D 
Sbjct: 60  SYYLSISCNHCSNPTCVAGCPTGAMHKREEDGLVVVNQDICVGCRYCELRCPYGAPQFDE 119

Query: 60  E 60
           +
Sbjct: 120 K 120


>gi|78188597|ref|YP_378935.1| NrfC protein [Chlorobium chlorochromatii CaD3]
 gi|78170796|gb|ABB27892.1| NrfC protein [Chlorobium chlorochromatii CaD3]
          Length = 180

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C +  CV  CP    +  E     I+   C  C  C   CP DA     +  ++
Sbjct: 50  SERCQHCDNAPCVTYCPTGASHYDEFGTVQINRSRCTGCKACMAACPYDARYVHPDGFVD 109

Query: 65  L 65
            
Sbjct: 110 K 110


>gi|323978928|gb|EGB74008.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 621

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E+C+ C    C   CPV     E     ++ P  CI CG C   CP  A+
Sbjct: 561 VTPESCVGC--GACKRACPVGAISGETRQAHSVDPTACIGCGACLDTCPFGAL 611


>gi|242238811|ref|YP_002986992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
 gi|242130868|gb|ACS85170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 233

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C +  CV  CP    Y+      + +H D C+ C  C   CP        E
Sbjct: 98  SCQHCDNPPCVSACPTGASYKDPATGIVDVHHDRCVGCRYCLAACPYHVRFIHPE 152


>gi|300774713|ref|ZP_07084576.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Chryseobacterium gleum ATCC 35910]
 gi|300506528|gb|EFK37663.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Chryseobacterium gleum ATCC 35910]
          Length = 1020

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV     G+     +  + CI    C   CP    + +         
Sbjct: 847 CQHCNHAPCETVCPVAATSHGKQGQNHMAYNRCIGTRYCANNCPYKVRRFNWFTYN---- 902

Query: 68  KINSEY 73
            +N ++
Sbjct: 903 -LNDKF 907


>gi|218691287|ref|YP_002399499.1| hydrogenase 2 protein HybA [Escherichia coli ED1a]
 gi|218428851|emb|CAR09652.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           ED1a]
          Length = 328

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|204930526|ref|ZP_03221456.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204320460|gb|EDZ05663.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 185

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKCEDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|222054475|ref|YP_002536837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563764|gb|ACM19736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 368

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E C  C    C++ C  D     E   AI  +EC+ CG C   C   A+        
Sbjct: 190 IAEEFCTGC--GACLKSCAHDAIAIIEGKAAIDQEECVGCGRCVTACMQQAVNIQWNEAS 247

Query: 64  ELWLKINSEYAT 75
           EL +K   E+A 
Sbjct: 248 ELIMKKMCEHAK 259


>gi|20093705|ref|NP_613552.1| heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus
           kandleri AV19]
 gi|41017082|sp|P96801|HDRA2_METKA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A 2
 gi|1890204|emb|CAA70999.1| heterodisulfide reductase [Methanopyrus kandleri]
 gi|19886593|gb|AAM01482.1| Heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus
           kandleri AV19]
          Length = 656

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           YV  + C  C    C EVCP++   E +  L                   I  + CI CG
Sbjct: 242 YVDEDACTGC--GACAEVCPIEVPNEFDEGLGMRKAIYKPFPQAVPSVFTIDEEHCIRCG 299

Query: 45  VCEPECPVDAIKPDTEPG 62
           +CE  C  DAI  D EP 
Sbjct: 300 LCEEVCDADAIDFDQEPE 317



 Score = 38.0 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E C  C    CVE+CP         +G+    +    C  CG C   CP  A++ + 
Sbjct: 581 VDEEICGGC--GTCVELCPYGAIELVEKDGKLVAEVTAALCKGCGTCAAACPSGAMEQNH 638

Query: 60  EPGLELWLKI 69
               +L+ +I
Sbjct: 639 FKTEQLYKQI 648


>gi|89108511|ref|AP_002291.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. W3110]
 gi|170081331|ref|YP_001730651.1| 4Fe-4S ferridoxin-type protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|226524717|ref|NP_416186.4| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|253773372|ref|YP_003036203.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161732|ref|YP_003044840.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli B str.
           REL606]
 gi|331642267|ref|ZP_08343402.1| putative oxidoreductase Fe-S subunit [Escherichia coli H736]
 gi|331668353|ref|ZP_08369201.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA271]
 gi|269849742|sp|P77375|YDHX_ECOLI RecName: Full=Uncharacterized ferredoxin-like protein ydhX; Flags:
           Precursor
 gi|85675068|dbj|BAA15443.2| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str. K12
           substr. W3110]
 gi|169889166|gb|ACB02873.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. DH10B]
 gi|226510944|gb|AAC74741.4| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|253324416|gb|ACT29018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973633|gb|ACT39304.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli B str.
           REL606]
 gi|253977828|gb|ACT43498.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli
           BL21(DE3)]
 gi|260449206|gb|ACX39628.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|309701896|emb|CBJ01208.1| putative oxidoreductase Fe-S subunit [Escherichia coli ETEC H10407]
 gi|315136312|dbj|BAJ43471.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli DH1]
 gi|331039065|gb|EGI11285.1| putative oxidoreductase Fe-S subunit [Escherichia coli H736]
 gi|331063547|gb|EGI35458.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA271]
          Length = 222

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137



 Score = 33.4 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 124 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 181

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 182 DSPEIQAWLQQNKYY 196


>gi|118581916|ref|YP_903166.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118504626|gb|ABL01109.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
          Length = 488

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ E+C+ C  T C  VCPV+C          I    CI CG C   C   AI
Sbjct: 435 ILAESCVGC--TLCSRVCPVNCISGTVKGVHVIDQAACIKCGACIDACKFQAI 485


>gi|326791937|ref|YP_004309758.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium lentocellum DSM 5427]
 gi|326542701|gb|ADZ84560.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium lentocellum DSM 5427]
          Length = 57

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y++ E+CI C    C   CPV C  EG++   I+ DECI+CG C   CPV A  P+
Sbjct: 1  MAYIINEDCISC--GACAAECPVSCISEGDSIYVINADECIECGACAGVCPVGAPNPE 56


>gi|284161205|ref|YP_003399828.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284011202|gb|ADB57155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 134

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK 56
           C  C+   CV+VCP     + +    I+  D CI C  C   C + AI 
Sbjct: 54  CRGCEDPPCVQVCPTGALRKRKGGGVIYKEDLCIGCKNCVQACTIGAIF 102


>gi|255016559|ref|ZP_05288685.1| putative hydrogenase [Bacteroides sp. 2_1_7]
 gi|256842203|ref|ZP_05547707.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262384870|ref|ZP_06078002.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377650|ref|ZP_06987601.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_19]
 gi|301308948|ref|ZP_07214893.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 20_3]
 gi|256736087|gb|EEU49417.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262293586|gb|EEY81522.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265353|gb|EFI07015.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_19]
 gi|300832974|gb|EFK63599.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 20_3]
          Length = 478

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  + CI CG C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVYIPIP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 15/84 (17%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  E CI C                  C EVCPV    + E  +  I   +CI CG C  
Sbjct: 147 IDHETCISCGKCHQSCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVN 206

Query: 49  ECPVDAIKPDTEPGLELWLKINSE 72
            CP  AI   ++    L    N E
Sbjct: 207 ACPFGAIFEISQVFDILQRLRNKE 230


>gi|238921486|ref|YP_002935001.1| hypothetical protein NT01EI_3638 [Edwardsiella ictaluri 93-146]
 gi|238871055|gb|ACR70766.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 211

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           C  C    C+EVCP    Y   +  + I    C  CG C   CP  
Sbjct: 88  CQHCDPAPCLEVCPSQATYRDAHGLIQIDTRRCTGCGYCIRACPYQ 133


>gi|225637774|gb|ACN97373.1| NarH [Halomonas cerina]
          Length = 322

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 150 MMYL-PRLCEHCLNPSCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 208

Query: 59  TE 60
            +
Sbjct: 209 WK 210


>gi|218782988|ref|YP_002434306.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764372|gb|ACL06838.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 378

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           M  V TE C+ C    C E C      +GE+   +++ D CI CGVC   CP +AI
Sbjct: 308 MAVVDTEKCVSC--GTCAEKCGTQAMTQGEDGSPSLNKDLCIGCGVCAHFCPENAI 361


>gi|160934887|ref|ZP_02082273.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753]
 gi|156866340|gb|EDO59712.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753]
          Length = 56

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +++ CI C    C   CPV+   EG+    I  D CIDCG C   CPV A + +
Sbjct: 1  MAYKISDECISC--GACEAGCPVNAISEGDGKYVIDADTCIDCGACADACPVGAPQAE 56


>gi|150006680|ref|YP_001301423.1| putative hydrogenase [Parabacteroides distasonis ATCC 8503]
 gi|149935104|gb|ABR41801.1| putative hydrogenase [Parabacteroides distasonis ATCC 8503]
          Length = 478

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  + CI CG C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVYIPIP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 15/84 (17%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  E CI C                  C EVCPV    + +  +  I   +CI CG C  
Sbjct: 147 IDHETCISCGKCHQSCPYHAIVYIPIPCEEVCPVKAISKDKYGVEHIDESKCIYCGKCVN 206

Query: 49  ECPVDAIKPDTEPGLELWLKINSE 72
            CP  AI   ++    L    N E
Sbjct: 207 ACPFGAIFEISQVFDILQRLRNKE 230


>gi|28898701|ref|NP_798306.1| nitrite reductase Fe-S protein NrfC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840172|ref|ZP_01992839.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ3810]
 gi|260363700|ref|ZP_05776484.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus K5030]
 gi|260879733|ref|ZP_05892088.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AN-5034]
 gi|260898793|ref|ZP_05907234.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus Peru-466]
 gi|260901606|ref|ZP_05910001.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ4037]
 gi|28806919|dbj|BAC60190.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746172|gb|EDM57292.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ3810]
 gi|308086597|gb|EFO36292.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus Peru-466]
 gi|308093420|gb|EFO43115.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308108690|gb|EFO46230.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308113400|gb|EFO50940.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus K5030]
          Length = 228

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C +  CV VCP    Y+ E+   +   +  C+ CG C   CP      +    
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDESTGIVDVHKERCVGCGYCLAACPYQVRFFNPVDH 152


>gi|113970564|ref|YP_734357.1| respiratory nitrate reductase subunit beta [Shewanella sp. MR-4]
 gi|114047798|ref|YP_738348.1| respiratory nitrate reductase subunit beta [Shewanella sp. MR-7]
 gi|113885248|gb|ABI39300.1| respiratory nitrate reductase beta subunit [Shewanella sp. MR-4]
 gi|113889240|gb|ABI43291.1| respiratory nitrate reductase beta subunit [Shewanella sp. MR-7]
          Length = 512

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAATCPSGAIYKREEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|26249564|ref|NP_755604.1| hydrogenase 2 protein HybA [Escherichia coli CFT073]
 gi|91212410|ref|YP_542396.1| hydrogenase 2 protein HybA [Escherichia coli UTI89]
 gi|117625301|ref|YP_854502.1| hydrogenase 2 protein HybA [Escherichia coli APEC O1]
 gi|191172476|ref|ZP_03034016.1| hydrogenase-2 electron transfer subunit [Escherichia coli F11]
 gi|215488322|ref|YP_002330753.1| hydrogenase 2 protein HybA [Escherichia coli O127:H6 str. E2348/69]
 gi|218550247|ref|YP_002384038.1| hydrogenase 2 protein HybA [Escherichia fergusonii ATCC 35469]
 gi|218560071|ref|YP_002392984.1| hydrogenase 2 protein HybA [Escherichia coli S88]
 gi|218706623|ref|YP_002414142.1| hydrogenase 2 protein HybA [Escherichia coli UMN026]
 gi|293406613|ref|ZP_06650539.1| hydrogenase 2 protein HybA [Escherichia coli FVEC1412]
 gi|293412374|ref|ZP_06655097.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298382352|ref|ZP_06991949.1| hydrogenase 2 protein HybA [Escherichia coli FVEC1302]
 gi|306816661|ref|ZP_07450793.1| hydrogenase 2 protein HybA [Escherichia coli NC101]
 gi|331648787|ref|ZP_08349875.1| hydrogenase-2 operon protein HybA [Escherichia coli M605]
 gi|331659278|ref|ZP_08360220.1| hydrogenase-2 operon protein HybA [Escherichia coli TA206]
 gi|331684642|ref|ZP_08385234.1| hydrogenase-2 operon protein HybA [Escherichia coli H299]
 gi|26109972|gb|AAN82177.1|AE016766_265 Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           CFT073]
 gi|91073984|gb|ABE08865.1| hydrogenase-2 operon protein HybA precursor [Escherichia coli
           UTI89]
 gi|115514425|gb|ABJ02500.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           APEC O1]
 gi|190907144|gb|EDV66743.1| hydrogenase-2 electron transfer subunit [Escherichia coli F11]
 gi|215266394|emb|CAS10831.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218357788|emb|CAQ90432.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia
           fergusonii ATCC 35469]
 gi|218366840|emb|CAR04610.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           S88]
 gi|218433720|emb|CAR14637.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           UMN026]
 gi|222034719|emb|CAP77461.1| hydrogenase-2 operon protein hybA [Escherichia coli LF82]
 gi|281180037|dbj|BAI56367.1| hydrogenase-2 small subunit [Escherichia coli SE15]
 gi|291426619|gb|EFE99651.1| hydrogenase 2 protein HybA [Escherichia coli FVEC1412]
 gi|291469145|gb|EFF11636.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294493161|gb|ADE91917.1| hydrogenase-2 electron transfer subunit [Escherichia coli IHE3034]
 gi|298277492|gb|EFI19008.1| hydrogenase 2 protein HybA [Escherichia coli FVEC1302]
 gi|305850226|gb|EFM50685.1| hydrogenase 2 protein HybA [Escherichia coli NC101]
 gi|312947557|gb|ADR28384.1| hydrogenase 2 protein HybA [Escherichia coli O83:H1 str. NRG 857C]
 gi|323188572|gb|EFZ73857.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli RN587/1]
 gi|323951481|gb|EGB47356.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323966527|gb|EGB61960.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|324114970|gb|EGC08935.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
 gi|327251780|gb|EGE63466.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli STEC_7v]
 gi|330909053|gb|EGH37567.1| hydrogenase-2 operon protein hybA precursor [Escherichia coli AA86]
 gi|331042534|gb|EGI14676.1| hydrogenase-2 operon protein HybA [Escherichia coli M605]
 gi|331053860|gb|EGI25889.1| hydrogenase-2 operon protein HybA [Escherichia coli TA206]
 gi|331078257|gb|EGI49463.1| hydrogenase-2 operon protein HybA [Escherichia coli H299]
          Length = 328

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|328952489|ref|YP_004369823.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452813|gb|AEB08642.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 352

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  ++C  C      E CP+D   EGE    +  + CI CGVC   CP +AI
Sbjct: 273 AHIDPDSCQACGVCR-DERCPMDAIEEGEGVYQVIDNRCIGCGVCVITCPGEAI 325


>gi|283953866|ref|ZP_06371396.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794645|gb|EFC33384.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 213

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + +     + CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|291287233|ref|YP_003504049.1| hypothetical protein Dacet_1321 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884393|gb|ADD68093.1| protein of unknown function DUF362 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 360

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             V+ E CILC    C++ CPVD      +F  +   +CI+C  C   C  DA+  +
Sbjct: 295 PVVLNEKCILC--MLCMKSCPVDAIAVINDFPFVDKKKCIECFCCHEVCESDAVGLE 349


>gi|225175583|ref|ZP_03729577.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter
          alkaliphilus AHT 1]
 gi|225168912|gb|EEG77712.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter
          alkaliphilus AHT 1]
          Length = 400

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          ++ + CI C+   C++ CP     E ++ +A+  D+C  CG C   CP DAI+ +     
Sbjct: 5  IIVDECIGCE--ACIDACPFPGAVEMKDDVAVLTDKCTGCGACADACPSDAIEVEETEVK 62

Query: 64 ELWLKINSEYATQWPNITTKKE 85
             + I  +Y   W  I  + +
Sbjct: 63 VD-VDI-KDYRGVWVFIEQRDK 82


>gi|206889463|ref|YP_002248730.1| nitrate-inducible formate dehydrogenase, beta subunit
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741401|gb|ACI20458.1| nitrate-inducible formate dehydrogenase, beta subunit
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 243

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            V++ C+ C    CV++CPV    + +    +    ++CI C  C+  CP D  + D 
Sbjct: 69  FVSQRCMHCGEPACVQICPVGALMKDKETGIVYYDKNKCIACHACKSACPFDVPRYDD 126


>gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 639

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ E C  C  T C   CPV+  Y E +    I    CI CG C   C  DA++  +E
Sbjct: 578 IIQEACKGC--TVCALKCPVNAIYGERKKPHVIDQSACIKCGACLEVCKFDAVRKVSE 633


>gi|297617763|ref|YP_003702922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145600|gb|ADI02357.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 354

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C      E CPV      E+   ++ D CI CG+C  +CP +AI        E   +
Sbjct: 277 CIGCGICA-EERCPVKAIEMIEDIAVLNNDRCIGCGLCVSKCPTNAISLVKRDDYEFPPE 335

Query: 69  INSEYATQ 76
              E + +
Sbjct: 336 TVRELSDR 343


>gi|296272504|ref|YP_003655135.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096678|gb|ADG92628.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 198

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C +VCP DCFY   + +   + D CI CG C   CP  A
Sbjct: 59  ISMACMHCADAPCQQVCPTDCFYIRTDGIVLHNKDICIGCGYCLFACPFGA 109


>gi|170068344|ref|XP_001868829.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial [Culex
           quinquefasciatus]
 gi|167864397|gb|EDS27780.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial [Culex
           quinquefasciatus]
          Length = 213

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 111 EERCIACKL--CEAICPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 168

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 169 VEGP----------NFEFSTETHEELLYNKEKLLSNGDKWESE 201


>gi|254361778|ref|ZP_04977913.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|153093313|gb|EDN74309.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
          Length = 205

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +V+ + CI C  T C++ CPVD      +    I PD C  C +C   CP + I+ 
Sbjct: 109 AFVIEDLCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNCIEM 163


>gi|189423121|ref|YP_001950298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189419380|gb|ACD93778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 367

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VVT   C  C    C++ C  D     +    I   +C  C  C   CP  A+       
Sbjct: 188 VVTARHCTAC--GLCIKACAHDAIRIVDGVAVIDAIKCAGCSRCITVCPTKAVAIQWNEA 245

Query: 63  LELWLKINSEYA 74
            +L +K  +EYA
Sbjct: 246 ADLVMKKMAEYA 257


>gi|146296862|ref|YP_001180633.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145410438|gb|ABP67442.1| Fe-S cluster domain protein [Caldicellulosiruptor saccharolyticus
          DSM 8903]
          Length = 444

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 13 EKCRGC--TNCIKKCPTEAIRVRSSKARIIDQRCIDCGECIRTCPYHA 58


>gi|15833135|ref|NP_311908.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. Sakai]
 gi|16130896|ref|NP_417470.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24114304|ref|NP_708814.1| hydrogenase 2 protein HybA [Shigella flexneri 2a str. 301]
 gi|30064351|ref|NP_838522.1| hydrogenase 2 protein HybA [Shigella flexneri 2a str. 2457T]
 gi|74313541|ref|YP_311960.1| hydrogenase 2 protein HybA [Shigella sonnei Ss046]
 gi|82545266|ref|YP_409213.1| hydrogenase 2 protein HybA [Shigella boydii Sb227]
 gi|89109771|ref|AP_003551.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. W3110]
 gi|110643236|ref|YP_670966.1| hydrogenase 2 protein HybA [Escherichia coli 536]
 gi|110806899|ref|YP_690419.1| hydrogenase 2 protein HybA [Shigella flexneri 5 str. 8401]
 gi|157159045|ref|YP_001464462.1| hydrogenase 2 protein HybA [Escherichia coli E24377A]
 gi|168747499|ref|ZP_02772521.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168753960|ref|ZP_02778967.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168760151|ref|ZP_02785158.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767014|ref|ZP_02792021.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168773352|ref|ZP_02798359.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168781867|ref|ZP_02806874.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168785865|ref|ZP_02810872.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168797583|ref|ZP_02822590.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170082544|ref|YP_001731864.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170679790|ref|YP_001745262.1| hydrogenase 2 protein HybA [Escherichia coli SMS-3-5]
 gi|170765746|ref|ZP_02900557.1| hydrogenase-2 electron transfer subunit [Escherichia albertii
           TW07627]
 gi|188496245|ref|ZP_03003515.1| hydrogenase-2 electron transfer subunit [Escherichia coli 53638]
 gi|191167535|ref|ZP_03029347.1| hydrogenase-2 electron transfer subunit [Escherichia coli B7A]
 gi|193062093|ref|ZP_03043189.1| hydrogenase-2 electron transfer subunit [Escherichia coli E22]
 gi|193067473|ref|ZP_03048441.1| hydrogenase-2 electron transfer subunit [Escherichia coli E110019]
 gi|194426277|ref|ZP_03058832.1| hydrogenase-2 electron transfer subunit [Escherichia coli B171]
 gi|194436749|ref|ZP_03068849.1| hydrogenase-2 electron transfer subunit [Escherichia coli 101-1]
 gi|195937142|ref|ZP_03082524.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. EC4024]
 gi|208805976|ref|ZP_03248313.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208813410|ref|ZP_03254739.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208821438|ref|ZP_03261758.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209398622|ref|YP_002272475.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209920472|ref|YP_002294556.1| hydrogenase 2 protein HybA [Escherichia coli SE11]
 gi|217326959|ref|ZP_03443042.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218555570|ref|YP_002388483.1| hydrogenase 2 protein HybA [Escherichia coli IAI1]
 gi|218696706|ref|YP_002404373.1| hydrogenase 2 protein HybA [Escherichia coli 55989]
 gi|218701770|ref|YP_002409399.1| hydrogenase 2 protein HybA [Escherichia coli IAI39]
 gi|238902114|ref|YP_002927910.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           BW2952]
 gi|253772165|ref|YP_003034996.1| hydrogenase 2 protein HybA [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254038165|ref|ZP_04872223.1| hydrogenase-2 electron transfer subunit [Escherichia sp. 1_1_43]
 gi|254162950|ref|YP_003046058.1| hydrogenase 2 protein HybA [Escherichia coli B str. REL606]
 gi|254794953|ref|YP_003079790.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. TW14359]
 gi|256019080|ref|ZP_05432945.1| hydrogenase 2 protein HybA [Shigella sp. D9]
 gi|256024418|ref|ZP_05438283.1| hydrogenase 2 protein HybA [Escherichia sp. 4_1_40B]
 gi|260845757|ref|YP_003223535.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O103:H2 str. 12009]
 gi|260857136|ref|YP_003231027.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O26:H11 str. 11368]
 gi|260869757|ref|YP_003236159.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O111:H- str. 11128]
 gi|261228012|ref|ZP_05942293.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254869|ref|ZP_05947402.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284379|ref|YP_003501197.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|293416441|ref|ZP_06659080.1| hydrogenase-2 operon protein hybA [Escherichia coli B185]
 gi|293449345|ref|ZP_06663766.1| hydrogenase-2 operon protein hybA [Escherichia coli B088]
 gi|297517180|ref|ZP_06935566.1| hydrogenase 2 protein HybA [Escherichia coli OP50]
 gi|301019948|ref|ZP_07184083.1| Tat pathway signal sequence [Escherichia coli MS 196-1]
 gi|307139686|ref|ZP_07499042.1| hydrogenase 2 protein HybA [Escherichia coli H736]
 gi|307310369|ref|ZP_07590017.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|331643698|ref|ZP_08344829.1| hydrogenase-2 operon protein HybA [Escherichia coli H736]
 gi|331654607|ref|ZP_08355607.1| hydrogenase-2 operon protein HybA [Escherichia coli M718]
 gi|331669980|ref|ZP_08370825.1| hydrogenase-2 operon protein HybA [Escherichia coli TA271]
 gi|331679072|ref|ZP_08379744.1| hydrogenase-2 operon protein HybA [Escherichia coli H591]
 gi|332280183|ref|ZP_08392596.1| hydrogenase-2 small subunit [Shigella sp. D9]
 gi|77417733|sp|P0AAJ9|HYBA_ECO57 RecName: Full=Hydrogenase-2 operon protein hybA; Flags: Precursor
 gi|77417734|sp|P0AAJ8|HYBA_ECOLI RecName: Full=Hydrogenase-2 operon protein hybA; Flags: Precursor
 gi|77417735|sp|P0AAK0|HYBA_SHIFL RecName: Full=Hydrogenase-2 operon protein hybA; Flags: Precursor
 gi|544483|gb|AAA21589.1| putative hydrogenase-2 small subunit [Escherichia coli]
 gi|882525|gb|AAA69163.1| hydrogenase-2 small subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13363353|dbj|BAB37304.1| hydrogenase-2 small subunit [Escherichia coli O157:H7 str. Sakai]
 gi|24053461|gb|AAN44521.1| hydrogenase-2 small subunit [Shigella flexneri 2a str. 301]
 gi|30042608|gb|AAP18332.1| hydrogenase-2 small subunit [Shigella flexneri 2a str. 2457T]
 gi|73857018|gb|AAZ89725.1| hydrogenase-2 small subunit [Shigella sonnei Ss046]
 gi|81246677|gb|ABB67385.1| hydrogenase-2 small subunit [Shigella boydii Sb227]
 gi|85675804|dbj|BAE77057.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K12 substr. W3110]
 gi|110344828|gb|ABG71065.1| hydrogenase-2 operon protein HybA precursor [Escherichia coli 536]
 gi|110616447|gb|ABF05114.1| hydrogenase-2 small subunit [Shigella flexneri 5 str. 8401]
 gi|157081075|gb|ABV20783.1| hydrogenase-2 electron transfer subunit [Escherichia coli E24377A]
 gi|169890379|gb|ACB04086.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170124892|gb|EDS93823.1| hydrogenase-2 electron transfer subunit [Escherichia albertii
           TW07627]
 gi|170517508|gb|ACB15686.1| hydrogenase-2 electron transfer subunit [Escherichia coli SMS-3-5]
 gi|187770783|gb|EDU34627.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017775|gb|EDU55897.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188491444|gb|EDU66547.1| hydrogenase-2 electron transfer subunit [Escherichia coli 53638]
 gi|189000639|gb|EDU69625.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189358464|gb|EDU76883.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189363781|gb|EDU82200.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189369254|gb|EDU87670.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189374019|gb|EDU92435.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189379701|gb|EDU98117.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190902392|gb|EDV62129.1| hydrogenase-2 electron transfer subunit [Escherichia coli B7A]
 gi|192932313|gb|EDV84911.1| hydrogenase-2 electron transfer subunit [Escherichia coli E22]
 gi|192959430|gb|EDV89865.1| hydrogenase-2 electron transfer subunit [Escherichia coli E110019]
 gi|194415585|gb|EDX31852.1| hydrogenase-2 electron transfer subunit [Escherichia coli B171]
 gi|194424231|gb|EDX40218.1| hydrogenase-2 electron transfer subunit [Escherichia coli 101-1]
 gi|208725777|gb|EDZ75378.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208734687|gb|EDZ83374.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208741561|gb|EDZ89243.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209160022|gb|ACI37455.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209759808|gb|ACI78216.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209759810|gb|ACI78217.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209759812|gb|ACI78218.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209759814|gb|ACI78219.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209759816|gb|ACI78220.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209913731|dbj|BAG78805.1| hydrogenase-2 small subunit [Escherichia coli SE11]
 gi|217319326|gb|EEC27751.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218353438|emb|CAU99515.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           55989]
 gi|218362338|emb|CAQ99960.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           IAI1]
 gi|218371756|emb|CAR19609.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           IAI39]
 gi|226839789|gb|EEH71810.1| hydrogenase-2 electron transfer subunit [Escherichia sp. 1_1_43]
 gi|238861449|gb|ACR63447.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           BW2952]
 gi|242378552|emb|CAQ33338.1| hydrogenase 2 4Fe-4S ferredoxin-type component, subunit of
           hydrogenase 2 [Escherichia coli BL21(DE3)]
 gi|253323209|gb|ACT27811.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974851|gb|ACT40522.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli B
           str. REL606]
 gi|253979006|gb|ACT44676.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           BL21(DE3)]
 gi|254594353|gb|ACT73714.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O157:H7 str. TW14359]
 gi|257755785|dbj|BAI27287.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O26:H11 str. 11368]
 gi|257760904|dbj|BAI32401.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O103:H2 str. 12009]
 gi|257766113|dbj|BAI37608.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O111:H- str. 11128]
 gi|260447962|gb|ACX38384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|281602387|gb|ADA75371.1| Hydrogenase-2 operon protein hybA precursor [Shigella flexneri
           2002017]
 gi|284923023|emb|CBG36115.1| hydrogenase-2 subunit [Escherichia coli 042]
 gi|290764252|gb|ADD58213.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322435|gb|EFE61864.1| hydrogenase-2 operon protein hybA [Escherichia coli B088]
 gi|291431797|gb|EFF04780.1| hydrogenase-2 operon protein hybA [Escherichia coli B185]
 gi|299882046|gb|EFI90257.1| Tat pathway signal sequence [Escherichia coli MS 196-1]
 gi|306909264|gb|EFN39759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309703432|emb|CBJ02771.1| hydrogenase-2 subunit [Escherichia coli ETEC H10407]
 gi|313648114|gb|EFS12560.1| twin-arginine translocation pathway signal sequence domain protein
           [Shigella flexneri 2a str. 2457T]
 gi|315062315|gb|ADT76642.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli W]
 gi|315137593|dbj|BAJ44752.1| hydrogenase-2 operon protein hybA precursor [Escherichia coli DH1]
 gi|315614999|gb|EFU95637.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 3431]
 gi|320184207|gb|EFW59023.1| Hydrogenase-2 operon protein hybA precursor [Shigella flexneri CDC
           796-83]
 gi|320189352|gb|EFW64011.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O157:H7 str. EC1212]
 gi|320201912|gb|EFW76487.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           EC4100B]
 gi|320640073|gb|EFX09645.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. G5101]
 gi|320645371|gb|EFX14380.1| hydrogenase 2 protein HybA [Escherichia coli O157:H- str. 493-89]
 gi|320650684|gb|EFX19141.1| hydrogenase 2 protein HybA [Escherichia coli O157:H- str. H 2687]
 gi|320656378|gb|EFX24285.1| hydrogenase 2 protein HybA [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661751|gb|EFX29159.1| hydrogenase 2 protein HybA [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666902|gb|EFX33878.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. LSU-61]
 gi|323154695|gb|EFZ40894.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli EPECa14]
 gi|323163052|gb|EFZ48885.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli E128010]
 gi|323168158|gb|EFZ53845.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella sonnei 53G]
 gi|323173759|gb|EFZ59388.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli LT-68]
 gi|323178706|gb|EFZ64282.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli 1180]
 gi|323183587|gb|EFZ68984.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli 1357]
 gi|323377100|gb|ADX49368.1| hydrogenase 2 protein HybA [Escherichia coli KO11]
 gi|323935999|gb|EGB32294.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323946755|gb|EGB42775.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|323960953|gb|EGB56572.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|324119612|gb|EGC13493.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|326337706|gb|EGD61540.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O157:H7 str. 1125]
 gi|326347270|gb|EGD70995.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O157:H7 str. 1044]
 gi|331037169|gb|EGI09393.1| hydrogenase-2 operon protein HybA [Escherichia coli H736]
 gi|331047989|gb|EGI20066.1| hydrogenase-2 operon protein HybA [Escherichia coli M718]
 gi|331062893|gb|EGI34807.1| hydrogenase-2 operon protein HybA [Escherichia coli TA271]
 gi|331073137|gb|EGI44460.1| hydrogenase-2 operon protein HybA [Escherichia coli H591]
 gi|332091947|gb|EGI97025.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella boydii 3594-74]
 gi|332102535|gb|EGJ05881.1| hydrogenase-2 small subunit [Shigella sp. D9]
 gi|332344955|gb|AEE58289.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli UMNK88]
 gi|332752673|gb|EGJ83058.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri K-671]
 gi|332753058|gb|EGJ83442.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri 4343-70]
 gi|332754735|gb|EGJ85101.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri 2747-71]
 gi|332765479|gb|EGJ95697.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri 2930-71]
 gi|332998941|gb|EGK18532.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri VA-6]
 gi|332999751|gb|EGK19335.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri K-272]
 gi|333000188|gb|EGK19771.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri K-218]
 gi|333014772|gb|EGK34117.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri K-304]
          Length = 328

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|224824377|ref|ZP_03697485.1| nitrate reductase, beta subunit [Lutiella nitroferrum 2002]
 gi|224603796|gb|EEG09971.1| nitrate reductase, beta subunit [Lutiella nitroferrum 2002]
          Length = 516

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|150008416|ref|YP_001303159.1| putative ferredoxin iron-sulfur protein [Parabacteroides distasonis
           ATCC 8503]
 gi|255014151|ref|ZP_05286277.1| putative ferredoxin, putative iron-sulfur protein [Bacteroides sp.
           2_1_7]
 gi|149936840|gb|ABR43537.1| putative ferredoxin, putative iron-sulfur protein [Parabacteroides
           distasonis ATCC 8503]
          Length = 262

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                + C  C++  CV+VCP       +  +   P+ CI C  C  ECP  A   DT  
Sbjct: 187 PVTDNDLCTQCEY--CVDVCPTHAISLADEGMYSDPNLCIKCCACVKECPEGARTFDTPY 244

Query: 62  GLE 64
              
Sbjct: 245 TAM 247


>gi|16761927|ref|NP_457544.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766449|ref|NP_462064.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143414|ref|NP_806756.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415090|ref|YP_152165.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181660|ref|YP_218077.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161616129|ref|YP_001590094.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167990309|ref|ZP_02571409.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231741|ref|ZP_02656799.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238101|ref|ZP_02663159.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242968|ref|ZP_02667900.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262900|ref|ZP_02684873.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463650|ref|ZP_02697567.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819796|ref|ZP_02831796.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446005|ref|YP_002042413.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194447754|ref|YP_002047144.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472018|ref|ZP_03078002.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736578|ref|YP_002116104.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197248550|ref|YP_002148070.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265085|ref|ZP_03165159.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364019|ref|YP_002143656.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198245843|ref|YP_002217126.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387105|ref|ZP_03213717.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928261|ref|ZP_03219461.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858408|ref|YP_002245059.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213161307|ref|ZP_03347017.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417308|ref|ZP_03350452.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213586280|ref|ZP_03368106.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213618584|ref|ZP_03372410.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213648646|ref|ZP_03378699.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|238909949|ref|ZP_04653786.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825343|ref|ZP_06544587.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25387630|pir||AE0885 hydrogenase-2 small chain [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421703|gb|AAL22023.1| unknown [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16504229|emb|CAD02981.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139048|gb|AAO70616.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129347|gb|AAV78853.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129293|gb|AAX66996.1| function unknown, intitally thought to be hydrogenase-2 small
           subunit which now identified as hybO [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365493|gb|ABX69261.1| hypothetical protein SPAB_03931 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404668|gb|ACF64890.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406058|gb|ACF66277.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458382|gb|EDX47221.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712080|gb|ACF91301.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633630|gb|EDX52044.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095496|emb|CAR61060.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212253|gb|ACH49650.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243340|gb|EDY25960.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289016|gb|EDY28387.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940359|gb|ACH77692.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604203|gb|EDZ02748.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322583|gb|EDZ07780.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205331109|gb|EDZ17873.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333855|gb|EDZ20619.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337793|gb|EDZ24557.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343282|gb|EDZ30046.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348510|gb|EDZ35141.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710211|emb|CAR34568.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267995331|gb|ACY90216.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159703|emb|CBW19222.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914173|dbj|BAJ38147.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087598|emb|CBY97362.1| Hydrogenase-2 operon protein hybA Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225826|gb|EFX50880.1| Hydrogenase-2 operon protein hybA precursor [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613551|gb|EFY10492.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621143|gb|EFY18001.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624206|gb|EFY21040.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628055|gb|EFY24844.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633174|gb|EFY29916.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636249|gb|EFY32957.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639586|gb|EFY36274.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647482|gb|EFY43971.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648665|gb|EFY45112.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653719|gb|EFY50045.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657826|gb|EFY54094.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663928|gb|EFY60127.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669060|gb|EFY65211.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672945|gb|EFY69052.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678063|gb|EFY74126.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681240|gb|EFY77273.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687830|gb|EFY83797.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716144|gb|EFZ07715.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323131506|gb|ADX18936.1| hydrogenase-2 subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195641|gb|EFZ80818.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199677|gb|EFZ84767.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202575|gb|EFZ87615.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207937|gb|EFZ92883.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212510|gb|EFZ97327.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215007|gb|EFZ99755.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222737|gb|EGA07102.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224181|gb|EGA08474.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230506|gb|EGA14624.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235143|gb|EGA19229.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239183|gb|EGA23233.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244460|gb|EGA28466.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247075|gb|EGA31041.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253443|gb|EGA37272.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256251|gb|EGA39987.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262574|gb|EGA46130.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267331|gb|EGA50815.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269266|gb|EGA52721.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624899|gb|EGE31244.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332990014|gb|AEF08997.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 328

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|311108198|ref|YP_003981051.1| benzoyl-CoA oxygenase/reductase BoxA [Achromobacter xylosoxidans
          A8]
 gi|310762887|gb|ADP18336.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Achromobacter
          xylosoxidans A8]
          Length = 412

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+       N   + P+ C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPIKAITHDSNNYVVDPEICNGCMACVPPCPTGAIDN 66


>gi|311106141|ref|YP_003978994.1| nitrate reductase subunit beta [Achromobacter xylosoxidans A8]
 gi|310760830|gb|ADP16279.1| nitrate reductase, beta subunit [Achromobacter xylosoxidans A8]
          Length = 521

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|307625400|gb|ADN69704.1| hydrogenase 2 protein HybA [Escherichia coli UM146]
          Length = 328

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|295109742|emb|CBL23695.1| Uncharacterized conserved protein [Ruminococcus obeum A2-162]
          Length = 379

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPV-----DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+  E CI C    CV+ CPV     D     EN       +CI C  C+  CP  AI
Sbjct: 320 PYIDPERCIRC--GICVKSCPVPDKAVDFRKGRENPPVYDYKKCIRCFCCQEMCPEKAI 376


>gi|255019725|ref|ZP_05291802.1| Anaerobic dimethyl sulfoxide reductase chain B [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970793|gb|EET28278.1| Anaerobic dimethyl sulfoxide reductase chain B [Acidithiobacillus
           caldus ATCC 51756]
          Length = 230

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C++ +CV VCP    Y+   +  + +   +C+ C  C   CP  A + D
Sbjct: 71  SCMHCENAECVTVCPTGASYKRAEDGIVLVDQSKCMGCNYCSWACPYGARELD 123


>gi|237730591|ref|ZP_04561072.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906130|gb|EEH92048.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 185

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  C+  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCENPACLAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETKKAE 114


>gi|126133937|ref|XP_001383493.1| mitochondrial complex I NUIM TYKY subunit (proton translocation)
           [Scheffersomyces stipitis CBS 6054]
 gi|126095642|gb|ABN65464.1| mitochondrial complex I NUIM TYKY subunit (proton translocation)
           [Scheffersomyces stipitis CBS 6054]
          Length = 226

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 124 EERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 181

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N EY+T      +  K++ L +  K +  
Sbjct: 182 VESP----------NVEYSTATREELLYNKEKLLENGDKWEQE 214


>gi|34497997|ref|NP_902212.1| nitrate reductase [Chromobacterium violaceum ATCC 12472]
 gi|34103853|gb|AAQ60213.1| nitrate reductase [Chromobacterium violaceum ATCC 12472]
          Length = 516

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|15803541|ref|NP_289574.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 EDL933]
 gi|25387625|pir||A85959 hydrogenase-2 small subunit [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517560|gb|AAG58133.1|AE005529_11 hydrogenase-2 small subunit [Escherichia coli O157:H7 str. EDL933]
          Length = 328

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|320180972|gb|EFW55893.1| Hydrogenase-2 operon protein hybA precursor [Shigella boydii ATCC
           9905]
          Length = 328

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|260430223|ref|ZP_05784197.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45]
 gi|260418695|gb|EEX11951.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45]
          Length = 461

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             C  T C+++CP        + + I P  C  CG C   CP  A+  D  P  
Sbjct: 89  TGC--TRCLDLCPTGAILPDGDHVTIDPMICAGCGACSAACPSGAVSYDAPPVD 140



 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T  C LC    CV +CP            L    D C+ CG+C   CP DAI  D
Sbjct: 309 VDTGACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGICATVCPEDAITLD 363


>gi|268680480|ref|YP_003304911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618511|gb|ACZ12876.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 212

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCP        + + +  + CI C +C   CP  AI  D E
Sbjct: 54  CRQCDDAPCANVCPTGALRIANSCVELCEEICIGCKLCTIACPYGAIVIDAE 105


>gi|226329427|ref|ZP_03804945.1| hypothetical protein PROPEN_03332 [Proteus penneri ATCC 35198]
 gi|225202613|gb|EEG84967.1| hypothetical protein PROPEN_03332 [Proteus penneri ATCC 35198]
          Length = 186

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +++  +  ++CI C  C   CP   ++  + P +     
Sbjct: 63  CHQCEDAPCANVCPNGAIIHNKDYYYVDQEKCIGCKTCVLACPYGTMEVVSRPVMRKSTA 122

Query: 69  INS 71
           +N+
Sbjct: 123 LNT 125


>gi|86158429|ref|YP_465214.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774940|gb|ABC81777.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 298

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    C   CPV    +      + +P+ C+ C  C   CP D  K +         
Sbjct: 104 CMHCLAPACASACPVKAMTKSPEGPVVYNPNRCMGCRYCMIACPFDVPKYEYGSNAPRVR 163

Query: 68  KIN 70
           K N
Sbjct: 164 KCN 166


>gi|24375983|ref|NP_720026.1| iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
 gi|24350982|gb|AAN57470.1|AE015883_1 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 558

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+  CP D        + + P  C   G C   CP  AI  D      L   +
Sbjct: 198 NGCN--RCLNFCPADAISSVAKKIEVDPYLCHGAGSCASTCPTGAISYDLPTPQALHSYL 255

Query: 70  N------SEYATQWPNI 80
           N       E A   P I
Sbjct: 256 NKMISRYREQAQTAPVI 272



 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 426 EKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKVI 474


>gi|187732487|ref|YP_001881759.1| hydrogenase 2 protein HybA [Shigella boydii CDC 3083-94]
 gi|187429479|gb|ACD08753.1| hydrogenase-2 electron transfer subunit [Shigella boydii CDC
           3083-94]
          Length = 328

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|310658792|ref|YP_003936513.1| aldo/keto reductase [Clostridium sticklandii DSM 519]
 gi|308825570|emb|CBH21608.1| Aldo/keto reductase [Clostridium sticklandii]
          Length = 316

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++++ CI C+   C +VC  +          +  + C+ C  C P C    I
Sbjct: 264 IISDWCIGCRE--CEKVCKQNAISVINGKAVVDKERCVLCSYCAPRCKEFCI 313


>gi|288961311|ref|YP_003451650.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288913619|dbj|BAI75106.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 197

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPVD    G + + +    CI C +C   CP  AI
Sbjct: 51 CHQCEDAPCARVCPVDAITFGADAILLDEQTCIGCKMCALACPFGAI 97


>gi|302528270|ref|ZP_07280612.1| formate dehydrogenase, beta subunit [Streptomyces sp. AA4]
 gi|302437165|gb|EFL08981.1| formate dehydrogenase, beta subunit [Streptomyces sp. AA4]
          Length = 276

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I+     
Sbjct: 96  SDVCKHCTHAACLDVCPTGALFRTEFDTVVVQQDICNGCGYCVPACPYGVIEKRESD 152


>gi|257792125|ref|YP_003182731.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488744|ref|ZP_07947279.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833021|ref|ZP_08165648.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|257476022|gb|ACV56342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912151|gb|EFV33725.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485738|gb|EGC88203.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 208

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
            C  C++  CV+VCPV   Y+      +    D+CI C +C   CP  
Sbjct: 65  ACQHCENPACVKVCPVGATYKDPETGAVRQDYDKCIGCRMCMSACPYT 112


>gi|284988958|ref|YP_003407512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062203|gb|ADB73141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 355

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 174 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQGDICNGCGYCVPSCPYGVI 224


>gi|223984910|ref|ZP_03635015.1| hypothetical protein HOLDEFILI_02314 [Holdemania filiformis DSM
           12042]
 gi|223963121|gb|EEF67528.1| hypothetical protein HOLDEFILI_02314 [Holdemania filiformis DSM
           12042]
          Length = 854

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+     + CP+      +  L I  D C  CG C  +CP  AI
Sbjct: 714 KCRGCQVCQIEKNCPIGAAKLIDGKLQIDADLCNHCGRCVSKCPFKAI 761


>gi|20094920|ref|NP_614767.1| flavoprotein [Methanopyrus kandleri AV19]
 gi|19888159|gb|AAM02697.1| Archaea-specific flavoprotein [Methanopyrus kandleri AV19]
          Length = 246

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+V  E C  C    CV+ CP       +    I    C+ CG C   CP DAI    E
Sbjct: 142 PYMVLRERCEGC--GICVDACPRSAIDMVDGKAFIRLLRCVGCGKCAEACPEDAIHGGLE 199

Query: 61  PGLE 64
             + 
Sbjct: 200 YEMR 203


>gi|157162476|ref|YP_001459794.1| hydrogenase 2 protein HybA [Escherichia coli HS]
 gi|157068156|gb|ABV07411.1| hydrogenase-2 electron transfer subunit [Escherichia coli HS]
          Length = 328

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|325498551|gb|EGC96410.1| hydrogenase 2 protein HybA [Escherichia fergusonii ECD227]
          Length = 328

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|317405296|gb|EFV85622.1| nitrate reductase [Achromobacter xylosoxidans C54]
          Length = 520

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|281353400|gb|EFB28984.1| hypothetical protein PANDA_010241 [Ailuropoda melanoleuca]
          Length = 174

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 72  EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 129

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 130 VEGP----------NFEFSTETHEELLYNKEKLLSNGDKWEAE 162


>gi|225713986|gb|ACO12839.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 203

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 101 EERCIACKL--CEAICPAQAITIEAEERSDGARRTTRYDIDMTKCIYCGLCQEACPVDAI 158

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 159 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 191


>gi|163783318|ref|ZP_02178311.1| DMSO reductase chain B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881426|gb|EDP74937.1| DMSO reductase chain B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 247

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + ++C+ C+   CV VCP    Y+ E    + ++ D+CI C +C   CP    + D  
Sbjct: 67  FHLPKSCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWSCPYGCREFDEA 126

Query: 61  PGLEL 65
             +  
Sbjct: 127 DKVMK 131


>gi|153005613|ref|YP_001379938.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029186|gb|ABS26954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 426

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 11/61 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF---------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           V    C  C+   CV VCPV+           +       +  D C+ CGVC   C   A
Sbjct: 288 VEESACNGCEK--CVRVCPVEAMSAVSANDPRHPKRTVARLDEDRCLGCGVCVRACAPRA 345

Query: 55  I 55
           I
Sbjct: 346 I 346


>gi|149908806|ref|ZP_01897466.1| putative formate dehydrogenase, iron-sulfur subunit [Moritella sp.
           PE36]
 gi|149808080|gb|EDM68021.1| putative formate dehydrogenase, iron-sulfur subunit [Moritella sp.
           PE36]
          Length = 205

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ +     D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFERTEDGIVLHDKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           + + +
Sbjct: 110 DAFAE 114


>gi|146278034|ref|YP_001168193.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17025]
 gi|145556275|gb|ABP70888.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17025]
          Length = 167

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 65  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 122

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E  ++   E         TK++ L +  + +  
Sbjct: 123 V--EGPNFEFSVETREELF------YTKEKLLQNGDRWEAE 155


>gi|300787601|ref|YP_003767892.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
 gi|299797115|gb|ADJ47490.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
          Length = 294

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C    C++VCP    +  E   + +  D C  CG C P CP   I      
Sbjct: 110 SDVCKHCTEAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCIPACPYGVIDQRDGD 166


>gi|282849310|ref|ZP_06258695.1| nitrate reductase, beta subunit [Veillonella parvula ATCC 17745]
 gi|282581014|gb|EFB86412.1| nitrate reductase, beta subunit [Veillonella parvula ATCC 17745]
          Length = 477

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C P CP   I  + E     
Sbjct: 181 CNHCLNPACVAACPSGAIYKRDEDGVVLVSQDVCRGWRHCVPSCPYKKIFYNWETNKAE 239


>gi|238019900|ref|ZP_04600326.1| hypothetical protein VEIDISOL_01776 [Veillonella dispar ATCC 17748]
 gi|237863424|gb|EEP64714.1| hypothetical protein VEIDISOL_01776 [Veillonella dispar ATCC 17748]
          Length = 475

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C P CP   I  + E     
Sbjct: 181 CNHCLNPACVAACPSGAIYKRDEDGVVLVSQDVCRGWRHCVPSCPYKKIFYNWETNKAE 239


>gi|258514656|ref|YP_003190878.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778361|gb|ACV62255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 936

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    C  C    C  VCP        N + I P +C  CG+C  ECP  AI
Sbjct: 864 VNNGKCAACL--TCTRVCPYGIPRVINNKVFIDPVQCKGCGICTVECPHKAI 913


>gi|291288473|ref|YP_003505289.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885633|gb|ADD69333.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 221

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           + V + C  C    C+  CP    ++ EN +  ++ D CI CG C   CP  A
Sbjct: 53  HFVPKLCNNCDDAPCIAACPTGATFKMENGIVAVNRDTCIGCGRCAEMCPYGA 105


>gi|237729926|ref|ZP_04560407.1| hydrogenase-2 small subunit [Citrobacter sp. 30_2]
 gi|226908532|gb|EEH94450.1| hydrogenase-2 small subunit [Citrobacter sp. 30_2]
          Length = 328

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|167586718|ref|ZP_02379106.1| nitrate reductase, beta subunit [Burkholderia ubonensis Bu]
          Length = 517

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ ++   + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSVYKRDDDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|161506280|ref|YP_001573392.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867627|gb|ABX24250.1| hypothetical protein SARI_04476 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 328

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|54261777|ref|NP_998304.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Danio rerio]
 gi|37194660|gb|AAH58299.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
 gi|41107574|gb|AAH65459.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
 gi|220678768|emb|CAX13299.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
          Length = 210

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|299470484|emb|CBN78476.1| NUOI homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
           siliculosus]
          Length = 236

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 134 EERCISCKL--CEAICPAQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQEACPVDAI 191

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    +  K++ L +  + +
Sbjct: 192 VEGP----------NYEFATETHEELLYDKEKLLANGDRWE 222


>gi|269797290|ref|YP_003311190.1| nitrate reductase subunit beta [Veillonella parvula DSM 2008]
 gi|269093919|gb|ACZ23910.1| nitrate reductase, beta subunit [Veillonella parvula DSM 2008]
          Length = 477

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C P CP   I  + E     
Sbjct: 181 CNHCLNPACVAACPSGAIYKRDEDGVVLVSQDVCRGWRHCVPSCPYKKIFYNWETNKAE 239


>gi|328474734|gb|EGF45539.1| nitrite reductase Fe-S protein NrfC [Vibrio parahaemolyticus 10329]
          Length = 228

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C +  CV VCP    Y+ E    +   +  C+ CG C   CP      +    
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCLAACPYQVRFFNPVDH 152


>gi|311247106|ref|XP_003122482.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Sus scrofa]
 gi|311247126|ref|XP_003122488.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Sus scrofa]
          Length = 239

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 137 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 194

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 195 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 227


>gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
 gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
          Length = 599

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +V+  E C  C    C + CP      E +    I P +CI CG C   C  DA+
Sbjct: 538 AFVIDEEACRGC--MRCSKACPAGAVSGEVKKPHHIDPVKCIACGSCREACNFDAV 591


>gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 605

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 1   MT--YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           MT  Y+    C  C    C + CP D    E +    I  D CI CG C   C   A+
Sbjct: 547 MTEFYIDASLCTGC--GLCKKNCPADAISGEIKEVHVIDQDRCIKCGECINNCKFQAV 602



 Score = 33.4 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + CP         F  I    C  CG+C+  CP DAI  + +   
Sbjct: 536 EKRCPAGVCRSMTEF-YIDASLCTGCGLCKKNCPADAISGEIKEVH 580


>gi|217967301|ref|YP_002352807.1| Fe-S cluster domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336400|gb|ACK42193.1| Fe-S cluster domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 443

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C H  C+  CP +          I P  CIDCG C   CP  A
Sbjct: 14 QRCRGCIH--CIRHCPTEAMRVRNGKSLIIPYRCIDCGECIRVCPYHA 59


>gi|157962637|ref|YP_001502671.1| dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
 gi|157847637|gb|ABV88136.1| Dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
          Length = 221

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAQDLCIGCESCARACPYDAPQIDR 137

Query: 60  E 60
           E
Sbjct: 138 E 138



 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 13/72 (18%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVD 53
           +V  + CI C+   C   CP D              +C  C          VC   CP+ 
Sbjct: 112 HVAQDLCIGCE--SCARACPYDAPQIDRERKV--MTKCDGCFERIADGRKPVCVESCPLR 167

Query: 54  AIKPDTEPGLEL 65
           A+  DT   L  
Sbjct: 168 ALDFDTMDNLRA 179


>gi|323484495|ref|ZP_08089861.1| hypothetical protein HMPREF9474_01612 [Clostridium symbiosum
          WAL-14163]
 gi|323692556|ref|ZP_08106789.1| Fe-S cluster domain-containing protein [Clostridium symbiosum
          WAL-14673]
 gi|323402273|gb|EGA94605.1| hypothetical protein HMPREF9474_01612 [Clostridium symbiosum
          WAL-14163]
 gi|323503422|gb|EGB19251.1| Fe-S cluster domain-containing protein [Clostridium symbiosum
          WAL-14673]
          Length = 470

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E C  C +  C++ CP            I+   CIDCG C   CP  A
Sbjct: 11 DPELCKGCIN--CIKRCPTQAIRVRNRKAQINSKFCIDCGECIRVCPHHA 58


>gi|313893886|ref|ZP_07827452.1| nitrate reductase, beta subunit [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441450|gb|EFR59876.1| nitrate reductase, beta subunit [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 475

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C P CP   I  + E     
Sbjct: 181 CNHCLNPACVAACPSGAIYKRDEDGVVLVSQDVCRGWRHCVPSCPYKKIFYNWETNKAE 239


>gi|195940544|ref|ZP_03085926.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
          O157:H7 str. EC4024]
          Length = 193

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          C  C++  CV+ CP     +  + + ++  +CI C  C   CP   +     P     +K
Sbjct: 33 CHHCENAPCVQSCPNGAITQHSDSVQVNQQKCIGCKACVVACPFGTMDMLVTPLENDSVK 92


>gi|127511175|ref|YP_001092372.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636470|gb|ABO22113.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 181

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A+    + 
Sbjct: 60  SCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYAAVSIREDD 114


>gi|332879175|ref|ZP_08446873.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682833|gb|EGJ55732.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 267

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ T +CI C    C++VCP+  F + +  L ++ + CI C +C   CP D+I  +    
Sbjct: 186 FLNTTSCIKC--GKCMKVCPMSIFQKSDVLLPMNEENCIQCQLCTKHCPTDSIYINESFT 243

Query: 63  LELWLKINSEYATQWPNITTKK 84
             + + +   ++++  +  + K
Sbjct: 244 NGMRIALREMFSSKLQDCYSSK 265


>gi|311279771|ref|YP_003942002.1| hydrogenase 2 protein HybA [Enterobacter cloacae SCF1]
 gi|308748966|gb|ADO48718.1| hydrogenase 2 protein HybA [Enterobacter cloacae SCF1]
          Length = 340

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +  +PD C  C  C   CP +  K D +  
Sbjct: 114 IKKQCMHCVDPNCVSVCPVQAMQKDPKTGIVHYNPDVCTGCRYCMVGCPFNVPKYDYDNP 173

Query: 63  LEL 65
              
Sbjct: 174 FGK 176


>gi|294793127|ref|ZP_06758273.1| nitrate reductase, beta subunit [Veillonella sp. 6_1_27]
 gi|294794835|ref|ZP_06759970.1| nitrate reductase, beta subunit [Veillonella sp. 3_1_44]
 gi|294454197|gb|EFG22571.1| nitrate reductase, beta subunit [Veillonella sp. 3_1_44]
 gi|294456072|gb|EFG24436.1| nitrate reductase, beta subunit [Veillonella sp. 6_1_27]
          Length = 469

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C P CP   I  + E     
Sbjct: 173 CNHCLNPACVAACPSGAIYKRDEDGVVLVSQDVCRGWRHCVPSCPYKKIFYNWETNKAE 231


>gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
          Length = 643

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CP D    + +    I P++C+ CG C  +C   AI  +
Sbjct: 590 IDPDKCKGC--TLCARTCPNDAVIGKVKEPHTIDPNKCVKCGACMEKCRFGAIYKE 643


>gi|158520213|ref|YP_001528083.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509039|gb|ABW66006.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 389

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV+ CP +  Y+ +    + I  D C     C   CP   I  
Sbjct: 170 CNHCAYPACVDACPRNAIYKRDEDGVVLIDQDRCKGYRFCLEACPYKVIYF 220


>gi|91202796|emb|CAJ72435.1| similar to sodium dependent NADH:ubiquinone oxidoreductase RnfB
           [Candidatus Kuenenia stuttgartiensis]
          Length = 274

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++CI CK   C + CP D  +   N   I   +C  CG C   CP   I   
Sbjct: 212 DSCIACK--RCEKECPYDAIHVQNNLAVIDYQKCTSCGKCVDVCPNHTIINY 261



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 18/69 (26%)

Query: 4   VVTENCILCKHTDCVEVCP----------------VDCFYEGENFLAIHPDECIDCGVCE 47
           V+ E C  C    C EVCP                     +G     I  D CI C  CE
Sbjct: 164 VIRERCTGC--GKCAEVCPREIISILPESKMVHVRCKSLDKGAVAKKICQDSCIACKRCE 221

Query: 48  PECPVDAIK 56
            ECP DAI 
Sbjct: 222 KECPYDAIH 230



 Score = 34.2 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            C     CVE C  +  Y G++ L  +  + C  CG C   CP + I    E
Sbjct: 138 GCLGLGTCVEACKFEAMYMGKDGLPKVIRERCTGCGKCAEVCPREIISILPE 189


>gi|90578855|ref|ZP_01234665.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
 gi|90439688|gb|EAS64869.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
          Length = 215

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C H +C +VCP    ++ E    + ++ D CI C  C   CP    +   
Sbjct: 68  AYYLSISCNHCTHPECTKVCPSGAMHKREEDGLVVVNEDVCIGCKYCHMACPYGEPQYSE 127

Query: 60  E 60
           E
Sbjct: 128 E 128


>gi|320581229|gb|EFW95450.1| NADH-quinone oxidoreductase chain I [Pichia angusta DL-1]
          Length = 212

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAEERADGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P +E   +   E       +  K++ L +  + +  
Sbjct: 168 V--ETPNIEYSTETREEL------LYNKEKLLSNGDRWEQE 200


>gi|294637161|ref|ZP_06715469.1| hydrogenase-2 operon protein HybA [Edwardsiella tarda ATCC 23685]
 gi|291089625|gb|EFE22186.1| hydrogenase-2 operon protein HybA [Edwardsiella tarda ATCC 23685]
          Length = 327

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV     +     +   PD C  C  C   CP D  K D +
Sbjct: 109 IKKQCMHCVDPNCVSVCPVSALKKHPVTGIVMYDPDVCTGCRYCMVACPFDVPKYDYD 166


>gi|270297051|ref|ZP_06203250.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273038|gb|EFA18901.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 486

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP    +  E+    I  D CI CG+C   CP  AI     P
Sbjct: 116 YEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAIVYIPVP 175

Query: 62  GLEL 65
             E 
Sbjct: 176 CEEA 179



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E  +  I   +CI CG C
Sbjct: 147 AWIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKC 206

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 207 LNACPFGAIF 216


>gi|261403277|ref|YP_003247501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370270|gb|ACX73019.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 164

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C    C EVCPV      + ++ ++ D CI CG+C   CP  AI  + +  
Sbjct: 44 CQHCASAPCKEVCPVSAIEHKDGYVYLNEDICIGCGLCALACPFGAISMEDKAY 97


>gi|226505580|ref|NP_001149640.1| LOC100283266 [Zea mays]
 gi|194703360|gb|ACF85764.1| unknown [Zea mays]
 gi|195605168|gb|ACG24414.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
 gi|195628756|gb|ACG36208.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
          Length = 223

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 121 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 179 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 211


>gi|153835285|ref|ZP_01987952.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio harveyi HY01]
 gi|148868221|gb|EDL67367.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio harveyi HY01]
          Length = 228

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 152


>gi|11344602|gb|AAG34374.1|AF197465_6 respiratory nitrate reductase beta subunit [Pseudomonas
           fluorescens]
          Length = 512

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+   +  + I  ++C    +C   CP   I  + +
Sbjct: 183 CEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFNWK 236


>gi|76803103|ref|YP_331198.1| anaerobic dehydrogenase iron-sulfur binding subunit 1 [Natronomonas
           pharaonis DSM 2160]
 gi|76558968|emb|CAI50564.1| conserved anaerobic dehydrogenase subunit/ anaerobic dehydrogenase
           (probable formate dehydrogenase, dimethyl sulfoxide
           reductase), iron-sulfur binding subunit 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 481

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  C +VCPV   +  +    +  + + CI C  C+  CP              
Sbjct: 227 PCQHCSNAPCEKVCPVRARHTRDKDGLVLTNYEVCIGCRYCQVACPYGVNYFQWGEPDVP 286

Query: 66  WLKI 69
           +  +
Sbjct: 287 YEDL 290


>gi|1171862|sp|P42028|NDUS8_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; AltName: Full=TYKY
           subunit; Flags: Precursor
 gi|163418|gb|AAA30664.1| NADH dehydrogenase (ubiquinone) [Bos taurus]
 gi|296471574|gb|DAA13689.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Bos taurus]
          Length = 212

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 168 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 200


>gi|323225712|gb|EGA09935.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
          Length = 356

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|315186845|gb|EFU20603.1| hypothetical protein SpithDRAFT_0758 [Spirochaeta thermophila DSM
           6578]
          Length = 371

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + C  C +  C  VCPV C    ++        CI C  C   CP +AI
Sbjct: 306 VIADRCRRCGY--CARVCPVSCITM-DSLPRWDYSRCIYCYCCHENCPHEAI 354


>gi|257438725|ref|ZP_05614480.1| thiosulfate reductase electron transport protein phsb
           [Faecalibacterium prausnitzii A2-165]
 gi|257198860|gb|EEU97144.1| thiosulfate reductase electron transport protein phsb
           [Faecalibacterium prausnitzii A2-165]
          Length = 214

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            + C  C+   C   CP       E  +  +  D+CI CG C   CP      + E
Sbjct: 118 PDTCRQCEDPACGNACPQKAIVTNEQGIRVVDTDKCIGCGACVEACPWHMPTVNPE 173



 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V T+ CI C    CVE CP                +CI CG C   CP  A+    
Sbjct: 148 VDTDKCIGC--GACVEACPWHMPTVNPETGK--SSKCIACGACVAGCPSGALSIVD 199


>gi|218691012|ref|YP_002399224.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           ED1a]
 gi|218428576|emb|CAR09503.2| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli ED1a]
          Length = 639

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV       + + ++  +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVYALTFQADSVQLNEQKCIGCKRCAIACPFGVVEMVD 106



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + CI CK   C   CP       +       +          C   CP  A++   + G
Sbjct: 84  EQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDKG 141

Query: 63  LEL 65
           L+ 
Sbjct: 142 LQQ 144


>gi|150399562|ref|YP_001323329.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150012265|gb|ABR54717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 140

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +   C+ C+   C+  CP D   + ++ + ++P++CI C +C   CPV AI  
Sbjct: 31 IPLRCMHCEDAPCIFACPKDAITKIDDKVVLNPEKCIGCALCIEACPVGAIDM 83


>gi|114706723|ref|ZP_01439623.1| formate dehydrogenase, iron-sulfur subunit, putative [Fulvimarina
           pelagi HTCC2506]
 gi|114537671|gb|EAU40795.1| formate dehydrogenase, iron-sulfur subunit, putative [Fulvimarina
           pelagi HTCC2506]
          Length = 195

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A + 
Sbjct: 48  ISVACMHCSDAPCMAVCPVDCFYQTADGVVLHSKDLCIGCGYCFYACPFGAPQY 101


>gi|153002610|ref|YP_001368291.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160877331|ref|YP_001556647.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|217971437|ref|YP_002356188.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|304412793|ref|ZP_07394395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307457|ref|ZP_07587192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|151367228|gb|ABS10228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160862853|gb|ABX51387.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|217496572|gb|ACK44765.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
 gi|304348873|gb|EFM13289.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910245|gb|EFN40678.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|315269536|gb|ADT96389.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 189

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|160881872|ref|YP_001560840.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium phytofermentans ISDg]
 gi|160430538|gb|ABX44101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 55

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + CI C    C   CPV    EG +   I  D C+DCG C   CP  AI
Sbjct: 1  MAYVINDGCISC--GACASECPVGAISEGASHYEIDADACLDCGACASTCPTGAI 53


>gi|78043414|ref|YP_360379.1| sigma-54 dependent transcriptional regulator [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995529|gb|ABB14428.1| sigma-54 dependent transcriptional regulator [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 732

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E C  C    CV  CPV      E    +  + CI CG C   C   A
Sbjct: 10 DKEKCKACY--ACVRNCPVKAIKIEEQKAEVLEERCIACGNCVRVCSQGA 57


>gi|305666894|ref|YP_003863181.1| nrfC protein [Maribacter sp. HTCC2170]
 gi|88709119|gb|EAR01353.1| nrfC protein [Maribacter sp. HTCC2170]
          Length = 177

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C++  CV  CP    +  +  +  +  DECI CG C   CP DA     +  ++
Sbjct: 54  SERCNHCENAPCVRCCPTGASHIVDGGIVLVTADECIGCGACIESCPYDARYQHPDGYVD 113

Query: 65  L 65
            
Sbjct: 114 K 114


>gi|126176326|ref|YP_001052475.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999531|gb|ABN63606.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 187

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|331648631|ref|ZP_08349719.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M605]
 gi|331042378|gb|EGI14520.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M605]
          Length = 644

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV       + + ++  +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVYALTFQADSVQLNEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + CI CK   C   CP       +       +          C   CP  A++   + G
Sbjct: 89  EQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDKG 146

Query: 63  LEL 65
           L+ 
Sbjct: 147 LQQ 149


>gi|331659015|ref|ZP_08359957.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA206]
 gi|315295673|gb|EFU54993.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           16-3]
 gi|331053597|gb|EGI25626.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA206]
          Length = 644

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV       + + ++  +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVYALTFQADSVQLNEQKCIGCKRCAIACPFGVVEMVD 111



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + CI CK   C   CP       +       +          C   CP  A++   + G
Sbjct: 89  EQKCIGCK--RCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIDVCPTQALRLMDDKG 146

Query: 63  LEL 65
           L+ 
Sbjct: 147 LQQ 149


>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
 gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
          Length = 780

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T++C+ C  T C + CP D   Y      +I  ++C+ CG+C  EC  DAI
Sbjct: 724 ITDDCVGC--TKCSKACPSDAIPYTPYEKHSIDIEKCVLCGLCIDECSFDAI 773


>gi|222033427|emb|CAP76168.1| Uncharacterized ferredoxin-like protein ydhX [Escherichia coli
           LF82]
 gi|307553692|gb|ADN46467.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli ABU
           83972]
          Length = 222

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137



 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIK--PD 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 124 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHE 181

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 182 DSPEIQAWLQENKYY 196


>gi|289810899|ref|ZP_06541528.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 125

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|195940382|ref|ZP_03085764.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           EC4024]
 gi|209396610|ref|YP_002270739.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209158010|gb|ACI35443.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209769272|gb|ACI82948.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769276|gb|ACI82950.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
          Length = 239

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154



 Score = 33.8 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|158423050|ref|YP_001524342.1| nitrate reductase beta subunit protein [Azorhizobium caulinodans
           ORS 571]
 gi|158329939|dbj|BAF87424.1| nitrate reductase beta subunit protein [Azorhizobium caulinodans
           ORS 571]
          Length = 508

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|254230289|ref|ZP_04923678.1| 4Fe-4S binding domain protein [Vibrio sp. Ex25]
 gi|151937186|gb|EDN56055.1| 4Fe-4S binding domain protein [Vibrio sp. Ex25]
          Length = 249

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 173


>gi|110805647|ref|YP_689167.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|170019979|ref|YP_001724933.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli ATCC 8739]
 gi|209918984|ref|YP_002293068.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11]
 gi|218554237|ref|YP_002387150.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli IAI1]
 gi|218695232|ref|YP_002402899.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli 55989]
 gi|307310758|ref|ZP_07590404.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|110615195|gb|ABF03862.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|169754907|gb|ACA77606.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|209912243|dbj|BAG77317.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11]
 gi|218351964|emb|CAU97696.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli 55989]
 gi|218361005|emb|CAQ98579.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli IAI1]
 gi|306908936|gb|EFN39432.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|315060976|gb|ADT75303.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli W]
 gi|323378452|gb|ADX50720.1| putative oxidoreductase, Fe-S subunit [Escherichia coli KO11]
          Length = 222

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137



 Score = 33.8 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 124 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 181

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 182 DSPEIQAWLQDNKYY 196


>gi|154174684|ref|YP_001407618.1| electron transport protein HydN [Campylobacter curvus 525.92]
 gi|112802520|gb|EAT99864.1| electron transport protein HydN [Campylobacter curvus 525.92]
          Length = 189

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 53  CRQCDDGPCANVCPTGALRFDDNCIELHEEICIGCKMCTIACPYGAISSSAE 104


>gi|332879377|ref|ZP_08447074.1| ferredoxin [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682797|gb|EGJ55697.1| ferredoxin [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 318

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   +CI C    CV+ CP +      N   I P++C  C  CE  CP  AI     P  
Sbjct: 219 VCKASCIGC--GKCVKTCPFEAITLNNNLAYIDPEKCKLCRKCEEACPKGAIHAINFPPR 276

Query: 64  ELWLK 68
           +  ++
Sbjct: 277 KPKVE 281



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 21/71 (29%)

Query: 4   VVTENCILCKHTDCVEVCP----------------VDCFYEGENFLA---IHPDECIDCG 44
           V  E C  C    CV+ CP                V      +       +    CI CG
Sbjct: 171 VDEERCTAC--GACVKTCPRRVIELRPKGPKNRRMVVMCVNRDKGAVANKVCKASCIGCG 228

Query: 45  VCEPECPVDAI 55
            C   CP +AI
Sbjct: 229 KCVKTCPFEAI 239


>gi|327479442|gb|AEA82752.1| respiratory nitrate reductase beta chain [Pseudomonas stutzeri DSM
           4166]
          Length = 512

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+   +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|327291045|ref|XP_003230232.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Anolis carolinensis]
          Length = 208

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 106 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 163

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 164 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 196


>gi|325281874|ref|YP_004254416.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712]
 gi|324313683|gb|ADY34236.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712]
          Length = 471

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y VT  C  C+   CV  CP           +I  ++C+ CG+C+  CP  AI  
Sbjct: 112 YAVTNLCRGCEGRPCVMNCPKAAISFIGGKASISSEDCVSCGLCQKVCPYHAIVY 166



 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 15/66 (22%)

Query: 6   TENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPEC 50
           +E+C+ C                  C +VCPV    +    +  I  ++CI CG C   C
Sbjct: 146 SEDCVSCGLCQKVCPYHAIVYTPVPCEDVCPVKAISKDAEGVEHIDKEKCIYCGKCMQAC 205

Query: 51  PVDAIK 56
           P  AI 
Sbjct: 206 PYGAIM 211



 Score = 34.2 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP 37
           ++  E CI C    C++ CP     E    + IH 
Sbjct: 189 HIDKEKCIYC--GKCMQACPYGAIMERSKIIDIHK 221


>gi|322618408|gb|EFY15298.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
          Length = 352

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235

Query: 59  TE 60
            +
Sbjct: 236 WK 237


>gi|297526113|ref|YP_003668137.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
 gi|297255029|gb|ADI31238.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
          Length = 295

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            ++ T+ C  C    C ++C          +F  I P  C  C  C   CP +AI
Sbjct: 65  PFIDTKKCTKC--GVCAKICDTGAILMPPNSFPVIFPRLCSGCKACYYACPYNAI 117


>gi|260772826|ref|ZP_05881742.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio metschnikovii
           CIP 69.14]
 gi|260611965|gb|EEX37168.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio metschnikovii
           CIP 69.14]
          Length = 202

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF + E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVKTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|240015030|ref|ZP_04721943.1| putative ferredoxin [Neisseria gonorrhoeae DGI18]
 gi|240081619|ref|ZP_04726162.1| putative ferredoxin [Neisseria gonorrhoeae FA19]
 gi|240113900|ref|ZP_04728390.1| putative ferredoxin [Neisseria gonorrhoeae MS11]
 gi|240116632|ref|ZP_04730694.1| putative ferredoxin [Neisseria gonorrhoeae PID18]
 gi|240118855|ref|ZP_04732917.1| putative ferredoxin [Neisseria gonorrhoeae PID1]
 gi|240122098|ref|ZP_04735060.1| putative ferredoxin [Neisseria gonorrhoeae PID24-1]
 gi|240124392|ref|ZP_04737348.1| putative ferredoxin [Neisseria gonorrhoeae PID332]
 gi|240124736|ref|ZP_04737622.1| putative ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|240129069|ref|ZP_04741730.1| putative ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|254494652|ref|ZP_05107823.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|260439607|ref|ZP_05793423.1| putative ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|268597712|ref|ZP_06131879.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268599961|ref|ZP_06134128.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268602297|ref|ZP_06136464.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268604560|ref|ZP_06138727.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268683016|ref|ZP_06149878.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268683315|ref|ZP_06150177.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268687445|ref|ZP_06154307.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291042849|ref|ZP_06568590.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226513692|gb|EEH63037.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|268551500|gb|EEZ46519.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268584092|gb|EEZ48768.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268586428|gb|EEZ51104.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268588691|gb|EEZ53367.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268623300|gb|EEZ55700.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268623599|gb|EEZ55999.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268627729|gb|EEZ60129.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291013283|gb|EFE05249.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 279

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVITDECTGCGLCVAPCPVDCIHM 126



 Score = 38.4 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+T+ C  C    CV  CPVDC +   
Sbjct: 101 MHTVITDECTGC--GLCVAPCPVDCIHMQP 128


>gi|189424836|ref|YP_001952013.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189421095|gb|ACD95493.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 343

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           +   C+ C +  C  +CP     + +N  + I  + C     C+  CP  
Sbjct: 130 IPRRCMHCDNPACATICPFSANTKDKNGAVVIDQELCFGGAKCKTVCPWQ 179


>gi|168188071|ref|ZP_02622706.1| anaerobic sulfite reductase subunit C [Clostridium botulinum C str.
           Eklund]
 gi|169294091|gb|EDS76224.1| anaerobic sulfite reductase subunit C [Clostridium botulinum C str.
           Eklund]
          Length = 304

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C  C     +E C +   Y+ E+ + I  ++CI+CG C   C  +A++ + E  
Sbjct: 170 DKCRNCGKCGVIEKCRMKAAYKEEDKVVIDREKCINCGKCIENCYFNAMETNEEGM 225


>gi|92118594|ref|YP_578323.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801488|gb|ABE63863.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 198

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY  E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTEDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|59802094|ref|YP_208806.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|194099985|ref|YP_002003124.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945]
 gi|239997992|ref|ZP_04717916.1| putative ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|240017478|ref|ZP_04724018.1| putative ferredoxin [Neisseria gonorrhoeae FA6140]
 gi|268593845|ref|ZP_06128012.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|293398133|ref|ZP_06642338.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62]
 gi|59718989|gb|AAW90394.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|193935275|gb|ACF31099.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945]
 gi|268547234|gb|EEZ42652.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|291611396|gb|EFF40466.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62]
 gi|317165435|gb|ADV08976.1| putative ferredoxin [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 279

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVITDECTGCGLCVAPCPVDCIHM 126



 Score = 38.4 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+T+ C  C    CV  CPVDC +   
Sbjct: 101 MHTVITDECTGC--GLCVAPCPVDCIHMQP 128


>gi|325265960|ref|ZP_08132646.1| electron transport complex protein RnfB [Kingella denitrificans
           ATCC 33394]
 gi|324982598|gb|EGC18224.1| electron transport complex protein RnfB [Kingella denitrificans
           ATCC 33394]
          Length = 284

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+    CI C  T C+  CPVD      +    +  DEC  CG+C P CPVD I
Sbjct: 73  AYIDEAVCIGC--TACIRACPVDAIMGASKLMHTVLADECTGCGLCVPPCPVDCI 125


>gi|325280763|ref|YP_004253305.1| ferredoxin [Odoribacter splanchnicus DSM 20712]
 gi|324312572|gb|ADY33125.1| ferredoxin [Odoribacter splanchnicus DSM 20712]
          Length = 56

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C   CPV     G +   I P+ C DCG C   CPV+AIK 
Sbjct: 1  MAYVISDDCISC--GTCEGECPVGAISMGADHYEIDPNACTDCGTCAGVCPVEAIKQ 55


>gi|283785099|ref|YP_003364964.1| oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
 gi|282948553|emb|CBG88143.1| putative oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
          Length = 208

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  CK   C++VCP++   +   E  + +    CI C  C   CP   
Sbjct: 120 PDTCRQCKDPQCMKVCPIEAIRWQPEEGCIVVDHKRCIGCSACTTACPWMM 170


>gi|257460510|ref|ZP_05625611.1| electron transport protein HydN [Campylobacter gracilis RM3268]
 gi|257441841|gb|EEV16983.1| electron transport protein HydN [Campylobacter gracilis RM3268]
          Length = 199

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP        N++ +H + CI C +C   CP  AI  + E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFDNNYIELHEEICIGCKMCTLACPYGAISSNAE 104


>gi|167762989|ref|ZP_02435116.1| hypothetical protein BACSTE_01354 [Bacteroides stercoris ATCC
           43183]
 gi|167699329|gb|EDS15908.1| hypothetical protein BACSTE_01354 [Bacteroides stercoris ATCC
           43183]
          Length = 373

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V TENCI C    CV+ C  D  +   E    I   +C+ CG C   C  DA        
Sbjct: 191 VATENCIGCN--ICVKHCAHDAIHLNAERKAEIDYTKCVGCGQCVALCQHDAAVVSD--- 245

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            +   ++N + A     +   K 
Sbjct: 246 WDTSERLNYKIAEYSVAVLKDKP 268


>gi|164686831|ref|ZP_02210859.1| hypothetical protein CLOBAR_00427 [Clostridium bartlettii DSM
          16795]
 gi|164604221|gb|EDQ97686.1| hypothetical protein CLOBAR_00427 [Clostridium bartlettii DSM
          16795]
          Length = 274

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 12/89 (13%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V  + CI C  T C + C V      +    I    CI CG C   CPV A+  D E   
Sbjct: 3  VDRDKCIGC--TLCKQDCIVSDIEMIDKKAHIRNLTCIKCGHCIAICPVKAVSCDDEE-- 58

Query: 64 ELWLKINSEYATQWPNITTKKESLPSAAK 92
                  EY+ +      K++    A K
Sbjct: 59 --------EYSMEEVIPYEKEDFTIDADK 79


>gi|268576410|ref|XP_002643185.1| Hypothetical protein CBG24154 [Caenorhabditis briggsae]
 gi|187040443|emb|CAP20828.1| hypothetical protein CBG_24154 [Caenorhabditis briggsae AF16]
          Length = 212

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  + +  
Sbjct: 168 VEGP----------NFEYSTETHEELLYNKEKLLLNGDRWEPE 200


>gi|317488877|ref|ZP_07947407.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832690|ref|ZP_08165453.1| putative electron transport protein HydN [Eggerthella sp. HGA1]
 gi|316911951|gb|EFV33530.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485829|gb|EGC88290.1| putative electron transport protein HydN [Eggerthella sp. HGA1]
          Length = 207

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    CV+ CP  C +  +  + +HPD+CI C  C   CP  A++  TE     
Sbjct: 52  CHHCAEAPCVDACPTGCLFTDDEHVGVHPDKCIGCRNCVLACPYGAVEIVTEKLPPE 108


>gi|255527286|ref|ZP_05394166.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296188356|ref|ZP_06856748.1| ferredoxin [Clostridium carboxidivorans P7]
 gi|255509024|gb|EET85384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296047482|gb|EFG86924.1| ferredoxin [Clostridium carboxidivorans P7]
          Length = 56

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + ++C+ C    C   CPV+   +G++   I    CIDCG C   CPV A   +
Sbjct: 1  MAYKIEDSCVSC--GTCASECPVNAISQGDSIFVIDESTCIDCGNCANVCPVGAPVQE 56


>gi|268678907|ref|YP_003303338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616938|gb|ACZ11303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 190

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           ++C+ C++T CV VCP    ++ E+ +  +  D C+ C  C   CP  A   D
Sbjct: 58  QSCVHCENTPCVNVCPTHASFKNEDGIVLVDVDLCVGCLYCVAACPYQARYVD 110


>gi|291288074|ref|YP_003504890.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885234|gb|ADD68934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 204

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            + V+  C  C    C+ +CP + + +   +  +    ++CI C  C+  CP  A   D 
Sbjct: 61  AFYVSMACNQCDDPACLNICPANAYTKRESDGIVVYDAEKCISCFGCQQVCPYTAPVYDY 120

Query: 60  EPGLEL 65
           E G   
Sbjct: 121 EAGHMK 126


>gi|289580158|ref|YP_003478624.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
 gi|289529711|gb|ADD04062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
          Length = 498

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  C    C +VCP    +  EN   +    D CI C  C+  CP            
Sbjct: 245 PCQHCTDAPCEKVCPTTARHTRENGGLVLTDYDVCIGCRYCQVACPYGVNYFQWGEPD 302


>gi|110680105|ref|YP_683112.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456221|gb|ABG32426.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 651

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C++VCP          +AI P  C  CG C   CP  AI  D  P   ++ ++
Sbjct: 281 KCLDVCPTGAITSAGEHVAIDPLICAGCGACSALCPSGAITYDAPPVGSVFSRL 334



 Score = 40.7 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP            L    D C+ CG+C   CP  AI
Sbjct: 498 VDTDACTLCL--SCVSLCPSGALGDNPDNPQLRFQEDACLQCGLCSNICPEQAI 549


>gi|269849725|sp|Q8X616|YDHX_ECO57 RecName: Full=Uncharacterized ferredoxin-like protein ydhX; Flags:
           Precursor
          Length = 222

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 124 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 181

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 182 DSPEIQAWLQDNKYY 196


>gi|78355523|ref|YP_386972.1| electron transport protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217928|gb|ABB37277.1| electron transport protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 164

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C  +CP       E  + +    CI C +C   CPV AI
Sbjct: 59  CRQCADAPCAAICPRGAIRMAEGVVTVDSGLCIGCKMCMVACPVGAI 105


>gi|258690626|gb|ACV88075.1| NarH [Halomonas cerina]
          Length = 323

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 151 MMYL-PRLCEHCLNPSCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 209

Query: 59  TE 60
            +
Sbjct: 210 WK 211


>gi|239908986|ref|YP_002955728.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
 gi|239798853|dbj|BAH77842.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
          Length = 475

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +    C  C+   C EVCPV      +     I  + C+ CG C   C   A   D    
Sbjct: 17 IDPNLCTGCR--RCAEVCPVGAVTGPQGQAQTIDAERCVLCGQCVQVCCAFAAPFDEPAH 74

Query: 63 L 63
           
Sbjct: 75 D 75


>gi|116792080|gb|ABK26223.1| unknown [Picea sitchensis]
          Length = 224

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 122 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 179

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 180 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 212


>gi|170742519|ref|YP_001771174.1| NADH dehydrogenase subunit I [Methylobacterium sp. 4-46]
 gi|226737402|sp|B0ULL2|NUOI_METS4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|168196793|gb|ACA18740.1| NADH-quinone oxidoreductase, chain I [Methylobacterium sp. 4-46]
          Length = 162

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E  ++   E       +  K+  L +  + +  
Sbjct: 117 IV--EGPNFEFSVETREEL------LYDKQRLLANGDRWERE 150


>gi|153950968|ref|YP_001398811.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938414|gb|ABS43155.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 213

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + +     + CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|57238533|ref|YP_179664.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           RM1221]
 gi|57167337|gb|AAW36116.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           RM1221]
 gi|315058963|gb|ADT73292.1| Formate dehydrogenase-O, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 213

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + +     + CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|46203868|ref|ZP_00050860.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 153

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           V+  C+ C    C  VCPV+CFY   + + +H  D CI  G C   CP  A 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGFGYCFYACPFGAH 102


>gi|86149326|ref|ZP_01067557.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152455|ref|ZP_01070660.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88596633|ref|ZP_01099870.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121613584|ref|YP_001001157.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|148925675|ref|ZP_01809363.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|157415732|ref|YP_001482988.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|167006050|ref|ZP_02271808.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|205356647|ref|ZP_03223409.1| putative formate dehydrogenase iron sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218563110|ref|YP_002344889.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|283956886|ref|ZP_06374359.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|85840108|gb|EAQ57366.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843340|gb|EAQ60550.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87249822|gb|EAQ72781.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|88191474|gb|EAQ95446.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360816|emb|CAL35616.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|145845685|gb|EDK22776.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|157386696|gb|ABV53011.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205345504|gb|EDZ32145.1| putative formate dehydrogenase iron sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|283791612|gb|EFC30408.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|284926716|gb|ADC29068.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307748373|gb|ADN91643.1| Formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315927458|gb|EFV06796.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315930114|gb|EFV09241.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 213

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + +     + CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|331673230|ref|ZP_08373998.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA280]
 gi|331069428|gb|EGI40815.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA280]
          Length = 222

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137


>gi|330468137|ref|YP_004405880.1| formate dehydrogenase subunit beta [Verrucosispora maris AB-18-032]
 gi|328811108|gb|AEB45280.1| formate dehydrogenase subunit beta [Verrucosispora maris AB-18-032]
          Length = 305

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C    C++VCP    +  E   + +  D C  CG C   CP   I    + 
Sbjct: 125 SDVCKHCTRAGCLDVCPTGALFRTEFGTVVVQEDICNGCGYCVSACPYGVIDRRVDD 181


>gi|300785105|ref|YP_003765396.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
 gi|299794619|gb|ADJ44994.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
          Length = 346

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I    + 
Sbjct: 163 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIDRRPDD 219


>gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain,
           NADH-quinone oxidoreductase chain F related [uncultured
           archaeon]
          Length = 658

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           Y+  + C  C+   C++ CP       +     I    CI CG+C   CP
Sbjct: 563 YIDPDKCTACRL--CMKNCPEGAIEGDKRVIHVIDQTLCIKCGICYDVCP 610


>gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 625

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           +YV+  E C  C  T C   CPV      +    +I   +CI CG C   C   AI
Sbjct: 569 SYVIDPEKCKGC--TKCARNCPVGAITGNKKEPHSIDTSKCIKCGTCLENCVFGAI 622


>gi|268592682|ref|ZP_06126903.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291311822|gb|EFE52275.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 180

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C    CV  CP    ++ E    + +  D+C+ C  C   CP +A + D
Sbjct: 58  ACNHCDDPQCVSHCPTTAMHKREEDGVVLVDHDKCVGCRYCTWACPYEAPQFD 110


>gi|261365994|ref|ZP_05978877.1| nitrate reductase, beta subunit [Neisseria mucosa ATCC 25996]
 gi|288565425|gb|EFC86985.1| nitrate reductase, beta subunit [Neisseria mucosa ATCC 25996]
          Length = 519

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSIYKREDDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|218705169|ref|YP_002412688.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli UMN026]
 gi|293405169|ref|ZP_06649161.1| ferredoxin-like protein ydhX [Escherichia coli FVEC1412]
 gi|298380812|ref|ZP_06990411.1| ferredoxin-like protein ydhX [Escherichia coli FVEC1302]
 gi|218432266|emb|CAR13156.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli UMN026]
 gi|291427377|gb|EFF00404.1| ferredoxin-like protein ydhX [Escherichia coli FVEC1412]
 gi|298278254|gb|EFI19768.1| ferredoxin-like protein ydhX [Escherichia coli FVEC1302]
          Length = 222

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137


>gi|169830310|ref|YP_001716292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Candidatus Desulforudis audaxviator MP104C]
 gi|169637154|gb|ACA58660.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
            Desulforudis audaxviator MP104C]
          Length = 1013

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            V  + C  C+   CV VCP       E +N   ++   C  CG C   CP  A +     
Sbjct: 943  VDKDKCSGCR--ICVTVCPYSAISFLEAQNVAEVNEVLCKGCGTCAAACPSHAAEHQGFK 1000

Query: 62   GLELWLKINSEY 73
              +L+ +I +  
Sbjct: 1001 DEQLFAEIEAFL 1012



 Score = 36.9 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 32/90 (35%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-------------------HPDECID- 42
           YV  + C+ C   DC   CPV    E    L I                   HP++C+  
Sbjct: 102 YVDADKCVAC--GDCAAKCPVKVSDEFNEGLEIRKIIANKYPQAVPNTYAITHPEKCLYL 159

Query: 43  ----------CGVCEPECPVDAIKPDTEPG 62
                     C +C+  C  DAI  + +  
Sbjct: 160 TKGVQTGKPVCLLCQKACGKDAINWEDKEK 189


>gi|169335538|ref|ZP_02862731.1| hypothetical protein ANASTE_01953 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258276|gb|EDS72242.1| hypothetical protein ANASTE_01953 [Anaerofustis stercorihominis DSM
           17244]
          Length = 376

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+V + CI CK   CV  CP       F E EN ++    +CI C  C+  C   AI+ 
Sbjct: 308 PYIVQKKCIRCK--ICVNACPLPDKAISFNEKENRISYDYSKCIRCYCCQEMCQSKAIEV 365

Query: 58  DTE 60
            T 
Sbjct: 366 KTP 368


>gi|168238216|ref|ZP_02663274.1| glutamate synthase, small subunit subfamily protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737239|ref|YP_002115541.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194712741|gb|ACF91962.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288936|gb|EDY28309.1| glutamate synthase, small subunit subfamily protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 653

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        N + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINNSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|149200582|ref|ZP_01877589.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Lentisphaera araneosa HTCC2155]
 gi|149136327|gb|EDM24773.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Lentisphaera araneosa HTCC2155]
          Length = 1048

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y     C+ C+   C  VCPV      E  L  +  + CI    C   CP    + +  
Sbjct: 868 AYHQPIPCMHCEKAPCELVCPVAATVHNEEGLNDMAYNRCIGTRYCGNNCPYKVRRFNFF 927

Query: 61  PGLELWLKINSEYAT--QWPNITTK 83
              E +     E       PN+T +
Sbjct: 928 QYQENFKDKRYEVQKMVHNPNVTVR 952


>gi|110641792|ref|YP_669522.1| putative ferredoxin-like protein YdhX [Escherichia coli 536]
 gi|110343384|gb|ABG69621.1| putative ferredoxin-like protein YdhX [Escherichia coli 536]
          Length = 222

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIK--PD 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 124 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHE 181

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 182 DSPEIQAWLQENKYY 196


>gi|51893469|ref|YP_076160.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857158|dbj|BAD41316.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
          Length = 198

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C    CV VCP    Y+      + ++ D+C+ C  C   CP DA + + E
Sbjct: 64  SCNHCADPACVYVCPTGAMYKRSDNGLVLVNQDDCVGCQSCVWACPYDAPQYNPE 118


>gi|110638608|ref|YP_678817.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110281289|gb|ABG59475.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 1023

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI------KPDTEP 61
           C  C H  C  VCPV         L  +  + CI    C   CP            D E 
Sbjct: 844 CQHCNHAPCETVCPVAATTHSSEGLNQMTYNRCIGTRYCANNCPYKVRRFNWFKYFDNEE 903

Query: 62  GLELWLKINSEY 73
             +  + +N+  
Sbjct: 904 KFDKNVAMNTSL 915


>gi|260913682|ref|ZP_05920158.1| hydrogenase-4 component A [Pasteurella dagmatis ATCC 43325]
 gi|260632221|gb|EEX50396.1| hydrogenase-4 component A [Pasteurella dagmatis ATCC 43325]
          Length = 200

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C    C  VCPV+   + +  + ++   CI C +C   CP  AI
Sbjct: 51 CHHCDDAPCATVCPVNAIKQVDRTIQLNESLCIGCKLCAIACPFGAI 97


>gi|291287972|ref|YP_003504788.1| nitrate reductase, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885132|gb|ADD68832.1| nitrate reductase, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 479

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y  E +  + I  ++C     C   CP   +  + 
Sbjct: 181 CNHCSNPACVASCPSGAIYKREDDGVVLIDQEKCKSWRYCVSACPYKKVYYNW 233


>gi|218548085|ref|YP_002381876.1| hydrogenase 4, 4Fe-4S subunit [Escherichia fergusonii ATCC 35469]
 gi|218355626|emb|CAQ88237.1| putative hydrogenase 4, 4Fe-4S subunit [Escherichia fergusonii
          ATCC 35469]
 gi|324112972|gb|EGC06948.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
          B253]
 gi|325496488|gb|EGC94347.1| hydrogenase 4, 4Fe-4S subunit [Escherichia fergusonii ECD227]
          Length = 205

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C +VCPV+     ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEDAPCQQVCPVNAISRHDDAIQLNETLCIGCKLCALVCPFGAI 97


>gi|146281283|ref|YP_001171436.1| respiratory nitrate reductase beta chain [Pseudomonas stutzeri
           A1501]
 gi|71841645|gb|AAZ43100.1| NarH [Pseudomonas stutzeri A1501]
 gi|145569488|gb|ABP78594.1| respiratory nitrate reductase beta chain [Pseudomonas stutzeri
           A1501]
          Length = 512

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+   +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|325145280|gb|EGC67558.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240013]
          Length = 279

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDESACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|313905672|ref|ZP_07839033.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
 gi|313469496|gb|EFR64837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
          Length = 206

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+NC  C    C+ VCP  C         I  + C+ CG C   CP  A+
Sbjct: 153 YFVTDNCTGC--GSCLSVCPQSCIITTRIPYVIEQEHCLHCGNCLNTCPAGAV 203


>gi|268323322|emb|CBH36910.1| heterodisulfide reductase subunit A [uncultured archaeon]
          Length = 668

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C+ C    C  +CP D        + ++   C  CG C   CP  AI      
Sbjct: 595 AFVDEGVCVGC--GTCEAICPFDALSLEAGVMHVNEVVCKGCGSCRSACPSGAITMRHFK 652

Query: 62  GLELWLKINS 71
             +++ +I +
Sbjct: 653 DEQIYAQIEA 662


>gi|256393617|ref|YP_003115181.1| nitrate reductase subunit beta [Catenulispora acidiphila DSM 44928]
 gi|256359843|gb|ACU73340.1| nitrate reductase, beta subunit [Catenulispora acidiphila DSM
           44928]
          Length = 526

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C     C   CP   I  
Sbjct: 187 CEHCLNPACVASCPSGALYKRAEDGIVLVDQDRCRGWQQCVTACPYKKIYF 237


>gi|149194151|ref|ZP_01871249.1| MOLYBDOPTERIN OXIDOREDUCTASE, IRON-SULFUR BINDING SUBUNIT
           [Caminibacter mediatlanticus TB-2]
 gi|149136104|gb|EDM24582.1| MOLYBDOPTERIN OXIDOREDUCTASE, IRON-SULFUR BINDING SUBUNIT
           [Caminibacter mediatlanticus TB-2]
          Length = 223

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP    +  E  +  +  D CI C  C   CP DA   D 
Sbjct: 61  CNHCIDAPCVTVCPTGASHFAEGGIVKVDYDMCIICKGCMEACPYDARFVDE 112


>gi|23394377|gb|AAN31478.1| NADH dehydrogenase [Phytophthora infestans]
          Length = 211

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 36/106 (33%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 109 EERCIACKL--CEAICPAQAITIEAEPRADGARRTTRYDIDMTKCIYCGFCQEACPVDAI 166

Query: 56  KPDTEPGLELWLKINSEYAT--QWPNITTKKESLPSAAKMDGVKQK 99
                         N E+AT      +  K + L +  K +    K
Sbjct: 167 VEGP----------NFEFATESHEELLYDKAKLLANGDKWEFEIAK 202


>gi|86151949|ref|ZP_01070162.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124937|ref|YP_004066941.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841057|gb|EAQ58306.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315018659|gb|ADT66752.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 213

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + +     + CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|219666551|ref|YP_002456986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|219536811|gb|ACL18550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 174

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          Y ++ +C  C++ +CV VCP   + + ++ +    P  C  CG C   CP  
Sbjct: 48 YFLSLSCNHCENPECVRVCPEGTYRKRKDGIVLHDPWRCSGCGKCTHACPFH 99


>gi|258690612|gb|ACV88068.1| NarH [Halomonas cerina]
          Length = 325

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 153 MMYL-PRLCEHCLNPSCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 211

Query: 59  TE 60
            +
Sbjct: 212 WK 213


>gi|269121726|ref|YP_003309903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
 gi|268615604|gb|ACZ09972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
          Length = 261

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C + CPV         +A   ++CI C  C   CPV A   D E      
Sbjct: 188 EACYDC--MKCAKECPVSAISFENPRIA-DANKCIHCCACVKACPVKAKYFDNEMMKNFS 244

Query: 67  LKINSEYATQWPNIT 81
           + + +++A +  NI 
Sbjct: 245 VMLETKFAEKKENII 259


>gi|223982716|ref|ZP_03632946.1| hypothetical protein HOLDEFILI_00220 [Holdemania filiformis DSM
           12042]
 gi|223965312|gb|EEF69594.1| hypothetical protein HOLDEFILI_00220 [Holdemania filiformis DSM
           12042]
          Length = 201

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y +T  C  C    C+ VCP  C         I  + C+ CG C+  CP  A+  +
Sbjct: 145 MRYGITAKCDGC--GVCLSVCPQQCIELTGKQAHIRQEHCLHCGQCQQHCPKQAVVRE 200


>gi|163857881|ref|YP_001632179.1| ferredoxin-NADP oxidoreductase [Bordetella petrii DSM 12804]
 gi|163261609|emb|CAP43911.1| ferredoxin-NADP oxidoreductase [Bordetella petrii]
          Length = 416

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D      N   + PD C  C  C P CP  +I  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDGNNYVVDPDICNGCMACVPPCPTGSIDN 66


>gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 628

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           MT  ++ E C  C  T C  +CPV     E +   +I   +CI CG C+  C   AI  +
Sbjct: 571 MTLKIIPELCKGC--TKCARLCPVSAISGEVKKLHSIDTKKCIKCGACKDSCGFKAIIEE 628


>gi|310642489|ref|YP_003947247.1| oxidoreductase fe-s binding subunit [Paenibacillus polymyxa SC2]
 gi|309247439|gb|ADO57006.1| Oxidoreductase Fe-S binding subunit [Paenibacillus polymyxa SC2]
          Length = 196

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C   CP       +  + I+ + CI C  C   CP  AI  
Sbjct: 59  CRHCEDAPCANACPNGSITNADGCILINSESCIGCKTCMIACPYGAITM 107


>gi|308463017|ref|XP_003093787.1| hypothetical protein CRE_24782 [Caenorhabditis remanei]
 gi|308249393|gb|EFO93345.1| hypothetical protein CRE_24782 [Caenorhabditis remanei]
          Length = 212

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  + +  
Sbjct: 168 VEGP----------NFEYSTETHEELLYNKEKLLLNGDRWEPE 200


>gi|258620204|ref|ZP_05715243.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM573]
 gi|258587562|gb|EEW12272.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM573]
          Length = 244

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           +C  C++  CV VCP    Y+ E    +   +  C+ CG C   CP       
Sbjct: 114 SCQHCENPPCVYVCPTGATYKDEATGIVDVHKERCVGCGYCIAACPYQVRFFH 166


>gi|225572422|ref|ZP_03781286.1| hypothetical protein RUMHYD_00716 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040125|gb|EEG50371.1| hypothetical protein RUMHYD_00716 [Blautia hydrogenotrophica DSM
           10507]
          Length = 277

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            Y++ + CI C    CV+ CPV+     + G+     +  +CI C  C+  CP  AI+
Sbjct: 220 PYILEDKCIGC--GICVDSCPVEGKALKFIGKKAPVYNYRKCIRCFCCQEMCPKKAIQ 275


>gi|119358331|ref|YP_912975.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355680|gb|ABL66551.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 188

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C +  CV  CP    +  E+    I+   C  C  C   CP DA     E  ++
Sbjct: 58  SERCQHCDNAPCVTYCPTRASHYAEDGTVQINRSRCTGCKACLAACPYDARYVHPEGFVD 117

Query: 65  L 65
            
Sbjct: 118 K 118


>gi|89895488|ref|YP_518975.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219669922|ref|YP_002460357.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89334936|dbj|BAE84531.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219540182|gb|ACL21921.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 192

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           Y  +E C  C+   C E CP    ++ EN +     ++CI C  C   CP 
Sbjct: 52  YHYSETCNHCEKPKCAEGCPTTALHKLENGIVDHDKNKCIGCRFCVWNCPY 102


>gi|331683178|ref|ZP_08383779.1| putative oxidoreductase Fe-S subunit [Escherichia coli H299]
 gi|331079393|gb|EGI50590.1| putative oxidoreductase Fe-S subunit [Escherichia coli H299]
          Length = 222

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137


>gi|313648951|gb|EFS13388.1| uncharacterized ferredoxin-like protein ydhX [Shigella flexneri 2a
           str. 2457T]
          Length = 222

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPY 136


>gi|283787085|ref|YP_003366950.1| anaerobic dimethyl sulfoxide reductase chain A [Citrobacter
           rodentium ICC168]
 gi|282950539|emb|CBG90205.1| anaerobic dimethyl sulfoxide reductase chain A [Citrobacter
           rodentium ICC168]
          Length = 208

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y ++  C  C    CV  CP    ++ E    + +    C+ C  CE  CP  A + D
Sbjct: 59  SYYLSIACNHCDEPVCVSGCPTGAMHKREEDGLVLVDDSVCVGCRYCEMRCPYGAPQFD 117


>gi|227873120|ref|ZP_03991412.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Oribacterium sinus F0268]
 gi|227841014|gb|EEJ51352.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Oribacterium sinus F0268]
          Length = 355

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C   DC+  CP    Y  E  +A  P++CI C  C   C  +A
Sbjct: 118 CIHC--GDCIPGCPTKAIYWEEGRVAFSPEKCIGCDQCIHACTHNA 161


>gi|197285565|ref|YP_002151437.1| anaerobic dimethyl sulfoxide reductase subunit B [Proteus mirabilis
           HI4320]
 gi|227356062|ref|ZP_03840453.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|194683052|emb|CAR43553.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           HI4320]
 gi|227163839|gb|EEI48747.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 205

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D 
Sbjct: 59  SYYLSISCNHCSNPTCVAGCPTGAMHKREEDGLVVVNQDVCVGCRYCELRCPYGAPQFDE 118

Query: 60  E 60
           +
Sbjct: 119 K 119


>gi|160888148|ref|ZP_02069151.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492]
 gi|317478948|ref|ZP_07938095.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156862283|gb|EDO55714.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492]
 gi|316904925|gb|EFV26732.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 486

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP    +  E+    I  D CI CG+C   CP  AI     P
Sbjct: 116 YEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAIVYIPVP 175

Query: 62  GLEL 65
             E 
Sbjct: 176 CEEA 179



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E  +  I   +CI CG C
Sbjct: 147 AWIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKC 206

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 207 LNACPFGAIF 216


>gi|91227192|ref|ZP_01261651.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio alginolyticus 12G01]
 gi|91188720|gb|EAS75008.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio alginolyticus 12G01]
          Length = 228

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 152


>gi|256004045|ref|ZP_05429030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 2360]
 gi|281419118|ref|ZP_06250135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum JW20]
 gi|255991968|gb|EEU02065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 2360]
 gi|281407267|gb|EFB37528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum JW20]
 gi|316941711|gb|ADU75745.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 1313]
          Length = 56

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA
Sbjct: 1  MAYFITDACISC--GACESECPVSCISPGDSVYVIDADACIECGACANVCPVDA 52


>gi|120600660|ref|YP_965234.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146291439|ref|YP_001181863.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120560753|gb|ABM26680.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563129|gb|ABP74064.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319428330|gb|ADV56404.1| formate dehydrogenase, FeS subunit, FdhB [Shewanella putrefaciens
           200]
          Length = 189

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|115524538|ref|YP_781449.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisA53]
 gi|122296203|sp|Q07NL5|NUOI2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|115518485|gb|ABJ06469.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisA53]
          Length = 162

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 21/112 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTERYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
           I     P  E   +   E          K + L +  + +    K+    +P
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKAKLLANGDRWEREIAKHMALDAP 160


>gi|332295972|ref|YP_004437895.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179075|gb|AEE14764.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 259

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           C  C    CV+VCP    ++ EN +     ++CI CG C   CP 
Sbjct: 73  CFHCGDPACVKVCPSGALFQAENGIVAFDENKCIACGYCHSACPF 117


>gi|311247108|ref|XP_003122483.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Sus scrofa]
 gi|311247128|ref|XP_003122489.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Sus scrofa]
          Length = 212

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 168 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 200


>gi|308050140|ref|YP_003913706.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307632330|gb|ADN76632.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 211

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y ++  C  C    CVE+CP    ++   +  + +  ++CI C +C   CP DA + D
Sbjct: 63  AYYMSIGCNHCSKPPCVEICPTGAMHKRAKDGIVRVDTEQCIGCEMCAEMCPYDAPQYD 121


>gi|298373293|ref|ZP_06983282.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274345|gb|EFI15897.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 491

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP +  +  +N    I  D CI CG+C   CP  AI     P
Sbjct: 114 YEITNLCKGCVARGCYTNCPKNAVHFQKNGQAQIDHDACISCGICHQSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C E CPV    + E  +  I   +CI CG C  
Sbjct: 147 IDHDACISCGICHQSCPYHAIVYIPVPCEESCPVKAISKDEFGIEHIDESKCIYCGKCIN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|294789068|ref|ZP_06754308.1| nitrate reductase, beta subunit [Simonsiella muelleri ATCC 29453]
 gi|294483170|gb|EFG30857.1| nitrate reductase, beta subunit [Simonsiella muelleri ATCC 29453]
          Length = 519

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSIYKREDDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|284161553|ref|YP_003400176.1| cobyrinic acid ac-diamide synthase [Archaeoglobus profundus DSM
           5631]
 gi|284011550|gb|ADB57503.1| Cobyrinic acid ac-diamide synthase [Archaeoglobus profundus DSM
           5631]
          Length = 277

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ + C  C    C+++C  D  Y   +   +    C  C  C   CP  AI+  +E   
Sbjct: 61  IIQDKCERC--GLCMDLCRFDAIYVENDSYKVDIVRCEGCAFCFRACPNKAIEMVSEERG 118

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           ++++   +EY      +    E   S   +  VK K EK     
Sbjct: 119 KIFVS-ETEYGPFVHALLEPGEE-NSGLLVHEVKAKAEKVAEEK 160


>gi|268315797|ref|YP_003289516.1| Fe-S-cluster-containing hydrogenase [Rhodothermus marinus DSM 4252]
 gi|262333331|gb|ACY47128.1| Fe-S-cluster-containing hydrogenase [Rhodothermus marinus DSM 4252]
          Length = 1039

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
            C+ C++  C  VCPV       + L  +  + CI    C   CP    + + 
Sbjct: 864 PCMHCENAPCESVCPVAATVHSPDGLNEMVYNRCIGTRYCSNNCPYKVRRFNW 916


>gi|254488903|ref|ZP_05102108.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101]
 gi|214045772|gb|EEB86410.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101]
          Length = 650

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C+++CP          +AI P  C  CG C   CP  AI  D  P   L+ ++
Sbjct: 282 CLDLCPTGAITSAGEHVAIDPLICAGCGSCSAVCPSGAITYDAPPVDTLFRRL 334



 Score = 39.2 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP            L    D C+ CG+C   CP  AI
Sbjct: 497 VDTDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANICPEQAI 548


>gi|169831731|ref|YP_001717713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638575|gb|ACA60081.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 262

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C EVC V  +        I  +P+ C+ C  C+  CP   I+   +   
Sbjct: 77  CNHCLEPLCAEVCFVHAYVVRPEGPVIYFNPEICVGCRYCQLACPFLNIQMKWDETW 133


>gi|182420185|ref|ZP_02951416.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237667529|ref|ZP_04527513.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182375987|gb|EDT73577.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237655877|gb|EEP53433.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 421

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV T  CI C    C  +CP++         + +  +    C+ CGVC   CP DAI
Sbjct: 287 PYVDTHKCIGC--GKCTNICPMEAIGVTTIGKDKYAKVDDKLCLGCGVCVKNCPKDAI 342


>gi|157145946|ref|YP_001453265.1| hypothetical protein CKO_01699 [Citrobacter koseri ATCC BAA-895]
 gi|157083151|gb|ABV12829.1| hypothetical protein CKO_01699 [Citrobacter koseri ATCC BAA-895]
          Length = 208

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C++VCP+    + + +  +A+    CI C  C   CP      ++E
Sbjct: 121 DTCRQCKDPQCMKVCPIGAITWKQDDGCIAVDHKRCIGCSACTTACPWMMATVNSE 176


>gi|159041649|ref|YP_001540901.1| thiamine pyrophosphate binding domain-containing protein
           [Caldivirga maquilingensis IC-167]
 gi|157920484|gb|ABW01911.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Caldivirga maquilingensis IC-167]
          Length = 606

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 4   VVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           V  + C  C    C     CP     E      I P+ C+ C VC   CP +AIKP  + 
Sbjct: 540 VDPDACKAC--GICYNLIACPAIAPLE-NRKAWIDPNMCVGCSVCAQVCPYNAIKPSGNA 596

Query: 60  EPGLELWLKI 69
           +  L+ W ++
Sbjct: 597 KEWLDKWAEM 606


>gi|157831039|pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
          Model At 1.8 Angstroms Resolution
          Length = 55

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV+ E CI C    C   CPVD   +G +   I  D CIDCG C   CPVDA
Sbjct: 1  AYVINEACISC--GACEPECPVDAISQGGSRYVIDADTCIDCGACAGVCPVDA 51


>gi|261403278|ref|YP_003247502.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370271|gb|ACX73020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 137

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C+  CP +      N + +  ++CI CG+C   CP  AI+ D
Sbjct: 32 KCMHCDKNPCLYACPENAIERINNKVVVIEEKCIGCGLCALACPFGAIRID 82



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V+ E CI C    C   CP          L  +     D  VC+  CP  AI  
Sbjct: 59  VIEEKCIGC--GLCALACPFGAIRIDGVALKCNGCYKRDVEVCKEVCPTGAIDH 110


>gi|220927620|ref|YP_002504529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          cellulolyticum H10]
 gi|219997948|gb|ACL74549.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          cellulolyticum H10]
          Length = 56

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y + + CI C    C   CPV C   G++   I  D CIDCG C   CPVDA
Sbjct: 1  MAYSINDACISC--GACESECPVSCITAGDSIYVIDEDTCIDCGACANVCPVDA 52


>gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
 gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
          Length = 626

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C + CPV+    E +    I   +CI CG C   C   AI
Sbjct: 573 IDKEKCRGCSK--CAKGCPVEAITGEIKKPYVIDKSKCIKCGNCIEGCVFKAI 623


>gi|296134443|ref|YP_003641690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296033021|gb|ADG83789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 190

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C + CP     + +  + I+   C+ C VC   CP  AI
Sbjct: 64  CRQCEDAPCAQACPTGAIRQEDGLVKINEQNCVGCKVCSMVCPFGAI 110


>gi|269218908|ref|ZP_06162762.1| nitrate reductase, beta subunit [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212019|gb|EEZ78359.1| nitrate reductase, beta subunit [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 511

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPACVSACPSGAMYKRTEDGIVLVDQDACRGWRMCVSACPYKKVYF 234


>gi|300023445|ref|YP_003756056.1| NADH-quinone oxidoreductase, chain I [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525266|gb|ADJ23735.1| NADH-quinone oxidoreductase, chain I [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 162

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K+  L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREELF------YDKERLLSNGDRWEREIAK 153


>gi|220904925|ref|YP_002480237.1| NADH-quinone oxidoreductase subunit I [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869224|gb|ACL49559.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 234

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 32/114 (28%), Gaps = 30/114 (26%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDA--- 54
            C+ C    C  VCP  C     +             I    CI CG C   CPV+A   
Sbjct: 67  RCVAC--MRCARVCPSHCIRIRSHRSVDGSRKVDAYVIDALRCIYCGYCAEVCPVNAIVL 124

Query: 55  --IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
             I        + ++   +     W              +    K   E Y +P
Sbjct: 125 TEIYAYAGRTRQEFVFDEAHLLRNW-------------DEFAAEKGSLEGYVNP 165


>gi|262393887|ref|YP_003285741.1| NrfC protein [Vibrio sp. Ex25]
 gi|262337481|gb|ACY51276.1| NrfC protein [Vibrio sp. Ex25]
          Length = 228

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 152


>gi|127514085|ref|YP_001095282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126639380|gb|ABO25023.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 230

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV VCP    Y  +    +A++ D C+ C  C   CP        E
Sbjct: 98  SCQHCEAAPCVRVCPTGAAYIDKETGIVAVNSDRCVGCQYCIAACPYQVRYIHPE 152


>gi|300856191|ref|YP_003781175.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
 gi|300436306|gb|ADK16073.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
          Length = 926

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           YV    C  C    C+EVCP DC    + ++  I   +C  CG+C  ECP +AI
Sbjct: 322 YVDPRKCKGC--GKCLEVCPEDCIEAKKGYISMIDEFDCTKCGICIDECPNNAI 373


>gi|257437704|ref|ZP_05613459.1| conserved domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257200011|gb|EEU98295.1| conserved domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 56

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV           ++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGC--GACEGACPVGAVTIENGVAVVNADACIDCGACEGACPTGAIAAE 56


>gi|157374447|ref|YP_001473047.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316821|gb|ABV35919.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 211

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y  + +C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D
Sbjct: 63  AYYTSISCNHCSEPVCVKACPTGAMHKRSKDGLVHVSSDLCIGCSSCAKACPYDAPQLD 121


>gi|85860212|ref|YP_462414.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
 gi|85723303|gb|ABC78246.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
          Length = 263

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            + C+ C +  CV+VCP    +  E     ++ + CI C  C   CP +  + D E
Sbjct: 71  KDGCMHCTNAACVKVCPSGALHYTEVGTVGLNHELCIGCKECVSACPFNIPRYDRE 126


>gi|224367189|ref|YP_002601352.1| NarH [Desulfobacterium autotrophicum HRM2]
 gi|223689905|gb|ACN13188.1| NarH [Desulfobacterium autotrophicum HRM2]
          Length = 473

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +
Sbjct: 181 CEHCLNPACVASCPSGALYKRDEDGIVLVDQERCRGWRYCVSGCPYKKVYFNWK 234


>gi|212636218|ref|YP_002312743.1| anaerobic dimethyl sulfoxide reductase subunit B [Shewanella
           piezotolerans WP3]
 gi|212557702|gb|ACJ30156.1| Anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           piezotolerans WP3]
          Length = 226

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D 
Sbjct: 79  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAEDICIGCESCSRACPYDAPQIDR 138

Query: 60  E 60
           E
Sbjct: 139 E 139



 Score = 33.4 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 13/72 (18%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVD 53
           +V  + CI C+   C   CP D              +C  C          VC   CP+ 
Sbjct: 113 HVAEDICIGCE--SCSRACPYDAPQIDRERKV--MTKCDGCFERIADGRKPVCVESCPLR 168

Query: 54  AIKPDTEPGLEL 65
           A+  DT   L  
Sbjct: 169 ALDFDTMDNLRE 180


>gi|149191926|ref|ZP_01870158.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1]
 gi|148834231|gb|EDL51236.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1]
          Length = 553

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 10/63 (15%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDA------IKP 57
           T+ C LC    CV VCP    +   +  A+   E  CI CG+CE  CP  A      I  
Sbjct: 417 TDKCTLC--MACVAVCPTKALHNDGDRPALDFIEQDCIQCGMCEKACPESALSLTQRINW 474

Query: 58  DTE 60
           D+E
Sbjct: 475 DSE 477



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 14/90 (15%)

Query: 6   TENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVD 53
           T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP +
Sbjct: 173 TDLCAHSSRGVKGCE--RCVDACPAGALSSEGNDKIGHKIEINPYLCQGVGTCATACPTE 230

Query: 54  AIKPDTEPGLELWLKINSEYATQWPNITTK 83
           AI        E    I    A        K
Sbjct: 231 AIHYALPTPQETQKFIERTLANYHNQGGEK 260


>gi|153956381|ref|YP_001397146.1| ferredoxin [Clostridium kluyveri DSM 555]
 gi|146349239|gb|EDK35775.1| Ferredoxin [Clostridium kluyveri DSM 555]
          Length = 57

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +T+ C+ C    C   CPV+C  +G+    I    CIDCG C   CPV A+    
Sbjct: 1  MAYKITDACMNC--GACASECPVECISQGDTQFLIDDGTCIDCGSCASVCPVGALVQAD 57


>gi|118580644|ref|YP_901894.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pelobacter propionicus DSM 2379]
 gi|118503354|gb|ABK99836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
          propionicus DSM 2379]
          Length = 56

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + ++CI C    C + CPV+   E +    I  D CIDCG C   CPV+AI
Sbjct: 1  MAHSINDDCINC--GACDDSCPVNAISEQDGKRVIDADTCIDCGACVDTCPVNAI 53


>gi|113971773|ref|YP_735566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886457|gb|ABI40509.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 188

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPYKVRFMNPE 112


>gi|319779236|ref|YP_004130149.1| Electron transport complex protein RnfB [Taylorella equigenitalis
           MCE9]
 gi|317109260|gb|ADU92006.1| Electron transport complex protein RnfB [Taylorella equigenitalis
           MCE9]
          Length = 201

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y++ E+CI C  T C++VCPVD      +    + PD C  C +C   CPVD I+ +  
Sbjct: 82  AYILEEHCIGC--TKCIQVCPVDSIIGANKWMHTVIPDFCTGCELCVLACPVDCIQMN-- 137

Query: 61  PGLELWLKINSEYAT 75
           P L LW + ++  A 
Sbjct: 138 PSLALWTEDDAAIAR 152


>gi|282864084|ref|ZP_06273141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
 gi|282561162|gb|EFB66707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
          Length = 302

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CGVC P CP   I+     
Sbjct: 115 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGVCVPACPYGVIEQRPTD 171


>gi|238762146|ref|ZP_04623118.1| Protein nrfC [Yersinia kristensenii ATCC 33638]
 gi|238699493|gb|EEP92238.1| Protein nrfC [Yersinia kristensenii ATCC 33638]
          Length = 212

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    Y  +    + + PD C+ C  C   CP  
Sbjct: 80  SCQHCDKAPCVDVCPTGASYRDKASGIVDVDPDLCVGCQYCIAACPYR 127


>gi|168466778|ref|ZP_02700632.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195630777|gb|EDX49369.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 653

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|197251269|ref|YP_002147431.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214972|gb|ACH52369.1| protein AegA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 653

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|197119509|ref|YP_002139936.1| hydrogenase 2 protein HybA [Geobacter bemidjiensis Bem]
 gi|197088869|gb|ACH40140.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase
           iron-sulfur cluster-binding subunit [Geobacter
           bemidjiensis Bem]
          Length = 309

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCPV    + +    +  ++  CI C  C+  CP +  K   E
Sbjct: 113 SCMHCQKPSCVSVCPVSAMTKEKVSGIVDYNKNTCIGCRYCQIACPYNIPKFQWE 167


>gi|115751579|ref|XP_792622.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, 23kDa (NADH-coenzyme Q reductase), partial
           [Strongylocentrotus purpuratus]
 gi|115932140|ref|XP_001191284.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, 23kDa (NADH-coenzyme Q reductase), partial
           [Strongylocentrotus purpuratus]
          Length = 195

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 93  EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 150

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 151 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 183


>gi|51891850|ref|YP_074541.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855539|dbj|BAD39697.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
          Length = 185

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + ++ +C  C    CV  CP    Y+ E    + +  + CI C  C   CP  A     E
Sbjct: 52  FNISISCNHCSDPRCVTNCPTGASYKREEDGLVLVDQEACIGCQYCVWSCPYGARHYLEE 111


>gi|322613782|gb|EFY10721.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619475|gb|EFY16351.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624980|gb|EFY21809.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629577|gb|EFY26353.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633993|gb|EFY30730.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635569|gb|EFY32280.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639936|gb|EFY36610.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644377|gb|EFY40918.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652096|gb|EFY48458.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655259|gb|EFY51568.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658306|gb|EFY54572.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664306|gb|EFY60503.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669474|gb|EFY65623.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673201|gb|EFY69307.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676592|gb|EFY72660.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322683343|gb|EFY79357.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685771|gb|EFY81764.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192551|gb|EFZ77780.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199597|gb|EFZ84688.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201245|gb|EFZ86313.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208075|gb|EFZ93020.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210202|gb|EFZ95103.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217068|gb|EGA01790.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220593|gb|EGA05042.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225488|gb|EGA09719.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229243|gb|EGA13367.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235442|gb|EGA19526.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237372|gb|EGA21435.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245127|gb|EGA29128.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248830|gb|EGA32756.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253117|gb|EGA36949.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255916|gb|EGA39661.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260966|gb|EGA44563.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266402|gb|EGA49890.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269767|gb|EGA53217.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 653

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|302039151|ref|YP_003799473.1| 2-ketoisovalerate ferredoxin reductase subunits gamma/delta
           [Candidatus Nitrospira defluvii]
 gi|300607215|emb|CBK43548.1| 2-ketoisovalerate ferredoxin reductase, fused gamma and delta
           subunit [Candidatus Nitrospira defluvii]
          Length = 305

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +V + C  C    C   CP        ++   I  D C  C +C  ECP  A+  + E
Sbjct: 238 PVLVADKCNGCWL--CFVYCPDGVISMNTDDRPVIDYDHCKGCQICVHECPTHALVAERE 295


>gi|298370042|ref|ZP_06981358.1| nitrate reductase, beta subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281502|gb|EFI22991.1| nitrate reductase, beta subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 522

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSIYKREDDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|225574426|ref|ZP_03783036.1| hypothetical protein RUMHYD_02495 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038354|gb|EEG48600.1| hypothetical protein RUMHYD_02495 [Blautia hydrogenotrophica DSM
          10507]
          Length = 57

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T+ C+ C    C   CP +   +GE+   I  D C+DCG C   CP +AI
Sbjct: 1  MAYVITDECVSC--GTCEAECPSEAISQGEDKYVIDADACVDCGTCADACPTEAI 53


>gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
 gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
          Length = 595

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            E C  C  T C   CPV       +N   I   +CI CG C  +C   AI
Sbjct: 544 KEKCKGC--TLCARQCPVGAISGSVKNPHVIDQTKCIKCGACMEKCKFGAI 592


>gi|167624839|ref|YP_001675133.1| dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
 gi|167354861|gb|ABZ77474.1| Dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
          Length = 221

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAQDLCIGCESCSRACPYDAPQIDR 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|114049282|ref|YP_739832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|117922353|ref|YP_871545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|113890724|gb|ABI44775.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
 gi|117614685|gb|ABK50139.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 189

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY  E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTEDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|300312935|ref|YP_003777027.1| respiratory nitrate reductase subunit beta [Herbaspirillum
           seropedicae SmR1]
 gi|300075720|gb|ADJ65119.1| respiratory nitrate reductase beta subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 517

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSVYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|296158465|ref|ZP_06841296.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          Ch1-1]
 gi|295891409|gb|EFG71196.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          Ch1-1]
          Length = 413

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CPVD     +N   +  D C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPVDAITHDDNNYVVKADICNGCMACVPPCPTGAIDN 66


>gi|225637768|gb|ACN97370.1| NarH [Halomonas koreensis]
          Length = 306

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 139 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 197

Query: 59  TE 60
            +
Sbjct: 198 WK 199


>gi|225637762|gb|ACN97368.1| NarH [Halomonas denitrificans]
          Length = 269

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 101 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 159

Query: 59  TE 60
            +
Sbjct: 160 WK 161


>gi|225024906|ref|ZP_03714098.1| hypothetical protein EIKCOROL_01794 [Eikenella corrodens ATCC
           23834]
 gi|224942310|gb|EEG23519.1| hypothetical protein EIKCOROL_01794 [Eikenella corrodens ATCC
           23834]
          Length = 522

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSIYKREDDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|254436213|ref|ZP_05049720.1| hypothetical protein NOC27_3276 [Nitrosococcus oceani AFC27]
 gi|207089324|gb|EDZ66596.1| hypothetical protein NOC27_3276 [Nitrosococcus oceani AFC27]
          Length = 52

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 60 EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
              + +L IN+E A  WP IT  KE    A + D +K 
Sbjct: 2  PKEHQKYLGINAELAKSWPVITESKEPPADADQWDRIKN 40


>gi|331000824|ref|ZP_08324470.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329570352|gb|EGG52085.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 210

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C  C+   C++VCP+   Y+G +  + I  D+CI C  C   CP      + +     +
Sbjct: 55  SCQHCEDPACLKVCPMKAVYKGPHGEILIDQDKCIACKACLAACPYGMPMFNDQKLTSYF 114

Query: 67  LKINSEYATQWPN 79
            +    ++   P 
Sbjct: 115 GEKQPLFSPSNPP 127


>gi|302833042|ref|XP_002948085.1| NADH:ubiquinone oxidoreductase subunit 8 [Volvox carteri f.
           nagariensis]
 gi|300266887|gb|EFJ51073.1| NADH:ubiquinone oxidoreductase subunit 8 [Volvox carteri f.
           nagariensis]
          Length = 229

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 184

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K++ L +  + +  
Sbjct: 185 V--EGPNFEFSTETREEL------LYDKQKLLENGDRWETE 217


>gi|224582989|ref|YP_002636787.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467516|gb|ACN45346.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|168261487|ref|ZP_02683460.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205349434|gb|EDZ36065.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|160943469|ref|ZP_02090702.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445148|gb|EDP22151.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium
          prausnitzii M21/2]
 gi|295103736|emb|CBL01280.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Faecalibacterium prausnitzii SL3/3]
          Length = 56

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV           ++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGC--GACEGACPVGAITIENGAAVVNADSCIDCGACEGACPTGAIAAE 56


>gi|283046736|ref|NP_001164315.1| NADH:ubiquinone reductase 23kD subunit precursor [Tribolium
           castaneum]
 gi|270009224|gb|EFA05672.1| hypothetical protein TcasGA2_TC015022 [Tribolium castaneum]
          Length = 212

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 168 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWESE 200


>gi|56412638|ref|YP_149713.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361573|ref|YP_002141209.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126895|gb|AAV76401.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093049|emb|CAR58488.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|16765799|ref|NP_461414.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991782|ref|ZP_02572881.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197263682|ref|ZP_03163756.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|16421020|gb|AAL21373.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197241937|gb|EDY24557.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205329923|gb|EDZ16687.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|267994588|gb|ACY89473.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159031|emb|CBW18544.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913467|dbj|BAJ37441.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|323130809|gb|ADX18239.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989407|gb|AEF08390.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|319901972|ref|YP_004161700.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417003|gb|ADV44114.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P
           36-108]
          Length = 486

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP    +  E+    I  D CI CG+C   CP  AI     P
Sbjct: 116 YEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAIVYIPVP 175

Query: 62  GLEL 65
             E 
Sbjct: 176 CEEA 179



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E  +  I   +CI CG C
Sbjct: 147 AWIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKC 206

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 207 LNACPFGAIF 216


>gi|212634955|ref|YP_002311480.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212556439|gb|ACJ28893.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 181

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A+    + 
Sbjct: 60  SCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYSAVSIREDD 114


>gi|225428485|ref|XP_002284290.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741457|emb|CBI32588.3| unnamed protein product [Vitis vinifera]
          Length = 223

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 121 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   + + E       +  K++ L +  + +  
Sbjct: 179 V--EGPNFEFTTETHEEL------LYDKEKLLENGDRWETE 211


>gi|217971441|ref|YP_002356192.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217496576|gb|ACK44769.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 198

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY   + +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTVDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|78222251|ref|YP_383998.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
          metallireducens GS-15]
 gi|78193506|gb|ABB31273.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
          metallireducens GS-15]
          Length = 74

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V++++C  C    CV+ CPV+      +   I  D CIDCG C   CP  AI
Sbjct: 20 AHVISDDCTNC--GSCVDSCPVNAIAPAGDKHKIDGDTCIDCGACVDTCPTSAI 71


>gi|78187885|ref|YP_375928.1| polysulfide reductase, subunit B, putative [Chlorobium luteolum DSM
           273]
 gi|78167787|gb|ABB24885.1| polysulfide reductase, subunit B, putative [Chlorobium luteolum DSM
           273]
          Length = 199

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++T C+  CP    +  E+ +  ++ D CI C  C   CP DA        +    
Sbjct: 60  CMHCENTPCLSACPTGATFMTEDGIVKVNYDRCIGCYACCIACPYDARYAYDREDVNKEE 119

Query: 68  KI 69
           ++
Sbjct: 120 EL 121


>gi|332298933|ref|YP_004440855.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168]
 gi|332182036|gb|AEE17724.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168]
          Length = 491

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+VT  C  C    C+  C        E    I P++C++CG+C   CP  AI
Sbjct: 112 YMVTNACQACLARPCMMNCAKKAIAITEGRARIDPEKCVNCGLCMQNCPYHAI 164



 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEP 48
           +  E C+ C                  C E CPV    + E     I   +CI CG C  
Sbjct: 144 IDPEKCVNCGLCMQNCPYHAIIKIPVPCEEACPVGAISKDETGKERIDYHKCIFCGNCMR 203

Query: 49  ECPVDAIK 56
           ECP  A+ 
Sbjct: 204 ECPFGAMM 211


>gi|317492597|ref|ZP_07951024.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919347|gb|EFV40679.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 326

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D 
Sbjct: 108 IKKQCMHCVDANCVSVCPVQALRKDPKTGIVHYDPDVCTGCRYCMVGCPFDVPKYDY 164


>gi|289743757|gb|ADD20626.1| NADH-ubiquinone oxidoreductase NDUFS8/23 kDa subunit [Glossina
           morsitans morsitans]
          Length = 215

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 113 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 170

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 171 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWESE 203


>gi|261247679|emb|CBG25506.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 613

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++C  C  T C+ VC VD    +  +   I  D+CI CG C   C  DAI
Sbjct: 559 YYITDDCKGC--TKCMNVCAVDAINGQVRSRHIIDADKCIRCGACRKICSFDAI 610


>gi|225637758|gb|ACN97367.1| NarH [Halomonas alimentaria]
          Length = 322

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 150 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 208

Query: 59  TE 60
            +
Sbjct: 209 WK 210


>gi|194443862|ref|YP_002041738.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194402525|gb|ACF62747.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|51894426|ref|YP_077117.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
 gi|51858115|dbj|BAD42273.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
          Length = 199

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C   CPV      +  + +  + CI C  C   CP  A+  
Sbjct: 61  CRHCEDAPCANACPVGAIVRQDGVVLVKQERCIGCKTCVLACPFGAMDM 109


>gi|302348244|ref|YP_003815882.1| putative ATPase RIL [Acidilobus saccharovorans 345-15]
 gi|302328656|gb|ADL18851.1| putative ATPase RIL [Acidilobus saccharovorans 345-15]
          Length = 601

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 2  TYVVTENCI--LCKHTDCVEVCPVD---------CFYEGENFLAIHPDECIDCGVCEPEC 50
            + ++ C    C +  C+ VCP++            +      IH D CI CG+C   C
Sbjct: 5  AVIDSDECKPKRCSYQ-CISVCPINKSKKDVAIEADTKARAKPVIHEDVCIGCGLCVKAC 63

Query: 51 PVDAI 55
          P DAI
Sbjct: 64 PFDAI 68


>gi|302803981|ref|XP_002983743.1| hypothetical protein SELMODRAFT_422906 [Selaginella moellendorffii]
 gi|302817680|ref|XP_002990515.1| hypothetical protein SELMODRAFT_428992 [Selaginella moellendorffii]
 gi|300141683|gb|EFJ08392.1| hypothetical protein SELMODRAFT_428992 [Selaginella moellendorffii]
 gi|300148580|gb|EFJ15239.1| hypothetical protein SELMODRAFT_422906 [Selaginella moellendorffii]
          Length = 215

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 113 EERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 170

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 171 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 203


>gi|200387321|ref|ZP_03213933.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199604419|gb|EDZ02964.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|168243251|ref|ZP_02668183.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447960|ref|YP_002046542.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194406264|gb|ACF66483.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337676|gb|EDZ24440.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|168232025|ref|ZP_02657083.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470701|ref|ZP_03076685.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194457065|gb|EDX45904.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333637|gb|EDZ20401.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|307250591|ref|ZP_07532533.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857407|gb|EFM89521.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 345

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV  CPV    + E    +   PD C  C  C   CP +  K D    
Sbjct: 108 IKKQCMHCVEPNCVTACPVQALTKDEKTGIVNYDPDICTGCRYCMVACPFNVPKYDYNNP 167

Query: 63  LEL 65
              
Sbjct: 168 FGK 170


>gi|256810830|ref|YP_003128199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256794030|gb|ACV24699.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 152

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C+  CP +     ++ + +  D+CI CG+C   CP  AI+ D
Sbjct: 46 KCMHCDKNPCLYACPENAIERIDDKVVVIKDKCIGCGLCAIACPFGAIRID 96



 Score = 36.9 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ + CI C    C   CP          +        D  +C+  CP  AI 
Sbjct: 73  VIKDKCIGC--GLCAIACPFGAIRIDGTAIKCDGCYKRDVEICKEVCPTGAIN 123


>gi|296127647|ref|YP_003634899.1| Ferredoxin hydrogenase [Brachyspira murdochii DSM 12563]
 gi|296019463|gb|ADG72700.1| Ferredoxin hydrogenase [Brachyspira murdochii DSM 12563]
          Length = 490

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT  C  C    C+  CP D      E    I   +CI+CG+C   CP  AI     P
Sbjct: 112 FMVTNACQACLARPCLVNCPKDAITILDEKRAHIDSSKCINCGLCLKNCPYHAIIYIPVP 171

Query: 62  GLE 64
             E
Sbjct: 172 CEE 174



 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 20/93 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            ++ +  CI C                  C E CPV    + E     I   +CI CG C
Sbjct: 143 AHIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNEQGKEVIDYHKCIFCGNC 202

Query: 47  EPECPVDAIKP-----DTEPGLELWLKINSEYA 74
             ECP  A+       D    L+   K+N  YA
Sbjct: 203 MRECPFSAMMDKGQLVDVLKHLKEDKKVNVMYA 235


>gi|161612772|ref|YP_001586737.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161362136|gb|ABX65904.1| hypothetical protein SPAB_00471 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|126734228|ref|ZP_01749975.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126717094|gb|EBA13958.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 643

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             C  T+C+++CP        + ++I P  C  CG C   CP  AI  D  P  
Sbjct: 273 TGC--TNCLDLCPTGAISPEGDHVSIDPMICAGCGACSAGCPSGAISYDAPPVD 324



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T++C LC    CV +CP         +  L    D C+ CG+C   CP DAI
Sbjct: 491 VNTDSCTLCL--SCVSLCPSGALGDNPDKPQLRFQEDACLQCGLCVQICPEDAI 542


>gi|24375548|ref|NP_719591.1| polysulfide reductase, subunit B [Shewanella oneidensis MR-1]
 gi|24350427|gb|AAN57035.1|AE015837_7 polysulfide reductase, subunit B [Shewanella oneidensis MR-1]
          Length = 188

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPYKVRFMNPE 112


>gi|114564289|ref|YP_751803.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114335582|gb|ABI72964.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 211

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D 
Sbjct: 63  AYYMSIACNHCSEPVCVKACPTGAMHKRREDGLVHVAADLCIGCESCARACPYDAPQIDK 122

Query: 60  E 60
           +
Sbjct: 123 D 123



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 19/80 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVD 53
           +V  + CI C+   C   CP D     ++       +C  C           C   CP+ 
Sbjct: 97  HVAADLCIGCE--SCARACPYDAPQIDKDRKV--MTKCDGCFERLAEGKQPSCVESCPMR 152

Query: 54  AIKPDTEPGLELWLKINSEY 73
           AI            ++ ++Y
Sbjct: 153 AIDF------GPMEELMAKY 166


>gi|328947025|ref|YP_004364362.1| Ferredoxin hydrogenase [Treponema succinifaciens DSM 2489]
 gi|328447349|gb|AEB13065.1| Ferredoxin hydrogenase [Treponema succinifaciens DSM 2489]
          Length = 492

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+VT  C  C    C+  CP       +    I    CI+CG C   CP  +I
Sbjct: 112 YMVTNACQGCYARPCMVNCPRKAITV-DRRATIDEKLCINCGKCMENCPYHSI 163



 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 15/86 (17%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
             +  + CI C                  C E CPV    + E     I   +CI CG C
Sbjct: 141 ATIDEKLCINCGKCMENCPYHSIIKIPVPCEEACPVGAISKDEKGHEKIDYHKCIFCGNC 200

Query: 47  EPECPVDAIKPDTEPGLELWLKINSE 72
             ECP  A+   ++    +   +N +
Sbjct: 201 MRECPFGAMMDKSQLVDVIKHIMNCK 226


>gi|325205297|gb|ADZ00750.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M04-240196]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 649

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C++ CPV     E ++   I  ++CI CG C+  C  +A+
Sbjct: 596 IDGEKCRGC--GLCLKNCPVQAIRGEKKSPHTIDNEKCIKCGACQTSCKFNAV 646


>gi|298372543|ref|ZP_06982533.1| ferredoxin, 4Fe-4S [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275447|gb|EFI16998.1| ferredoxin, 4Fe-4S [Bacteroidetes oral taxon 274 str. F0058]
          Length = 55

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+T++C+ C    C+  CPV    EG+    I P  C  CG C   CP +AI P+
Sbjct: 1  MAYVITDDCVAC--GTCIGECPVGAISEGD-IYVIDPTACTSCGTCAEVCPSEAIHPE 55


>gi|295107118|emb|CBL04661.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 175

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C+   C  VCP    Y G + +  +    CI C  C   CP      + +
Sbjct: 53  CMHCEDAPCAAVCPTGAAYIGADGIVGVDEGRCIGCKYCMAACPYQVRVHNEK 105


>gi|317051724|ref|YP_004112840.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946808|gb|ADU66284.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurispirillum indicum S5]
          Length = 349

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVD 53
           V   C+ C +  C ++CP    ++  E  + I P  C     C+  CP  
Sbjct: 126 VPRRCMHCDNPPCAKLCPFGVKHKHPEGMVTIDPFLCFGGSKCKSVCPWH 175


>gi|254519684|ref|ZP_05131740.1| nitroreductase fused to ferredoxin domain-containing protein
          [Clostridium sp. 7_2_43FAA]
 gi|226913433|gb|EEH98634.1| nitroreductase fused to ferredoxin domain-containing protein
          [Clostridium sp. 7_2_43FAA]
          Length = 273

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V  E CI C    C+  C V      +    I+   C  CG C   CP +A+  D E
Sbjct: 1  MMKVDKEKCIGCSL--CINDCIVRDINLVDGKANINNITCFKCGHCIAVCPKNAVSTD-E 57

Query: 61 PGLELWLKINSEYAT 75
            ++     N E   
Sbjct: 58 YNMDDVKDYNKEAFE 72


>gi|224077832|ref|XP_002305427.1| predicted protein [Populus trichocarpa]
 gi|222848391|gb|EEE85938.1| predicted protein [Populus trichocarpa]
          Length = 222

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 120 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   + + E       +  K++ L +  + +  
Sbjct: 178 V--EGPNFEFTTETHEEL------LYDKEKLLDNGDRWETE 210


>gi|167771902|ref|ZP_02443955.1| hypothetical protein ANACOL_03275 [Anaerotruncus colihominis DSM
           17241]
 gi|167665700|gb|EDS09830.1| hypothetical protein ANACOL_03275 [Anaerotruncus colihominis DSM
           17241]
          Length = 384

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V   +C+ C    C E CP            I+   CI C  C+  CPV AI   T  
Sbjct: 318 PHVRPRDCVGC--GRCAESCPAKTIRIKNKKAKINLSNCIHCFCCQEMCPVRAIDVHTVK 375

Query: 62  GLELW 66
              L+
Sbjct: 376 LFHLF 380


>gi|220924013|ref|YP_002499315.1| NADH dehydrogenase subunit I [Methylobacterium nodulans ORS 2060]
 gi|254772594|sp|B8IUV4|NUOI_METNO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|219948620|gb|ACL59012.1| NADH-quinone oxidoreductase, chain I [Methylobacterium nodulans ORS
           2060]
          Length = 162

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E  ++   E       +  K++ L +  + +  
Sbjct: 117 IV--EGPNFEFSVETREEL------LYDKQKLLANGDRWERE 150


>gi|170729130|ref|YP_001763156.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814477|gb|ACA89061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 196

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP DCFY  ++ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPADCFYRTDDGIVLHNKDTCIGCGYCLYACPFGA 103


>gi|74149244|dbj|BAE22408.1| unnamed protein product [Mus musculus]
          Length = 212

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 168 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAK 200


>gi|331002353|ref|ZP_08325871.1| ferredoxin [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410169|gb|EGG89603.1| ferredoxin [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 55

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV    +G+    I  D CIDCG C   CP DAI
Sbjct: 1  MAYTITDKCVSC--GTCEGECPVSAISQGDTQFNIDADACIDCGTCASVCPTDAI 53


>gi|329119811|ref|ZP_08248485.1| respiratory nitrate reductase, beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463967|gb|EGF10278.1| respiratory nitrate reductase, beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 523

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSIYKREDDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|254673479|emb|CBA08875.1| putative ferredoxin [Neisseria meningitidis alpha275]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDESACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|217966538|ref|YP_002352044.1| protein of unknown function DUF362 [Dictyoglomus turgidum DSM 6724]
 gi|217335637|gb|ACK41430.1| protein of unknown function DUF362 [Dictyoglomus turgidum DSM 6724]
          Length = 378

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI C+   C   CP        N + I   +CI C  C   CP  AI+ +
Sbjct: 319 EKCIKCR--ICENSCPNKAITYDPNKMIIDYKKCISCFCCHELCPQKAIRLE 368


>gi|167622043|ref|YP_001672337.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352065|gb|ABZ74678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 559

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  T C+  CP D     E  + I P  C   G C   CP  AI  D     
Sbjct: 195 GC--TRCLNFCPADAIASIEKKIEIDPYLCHGAGSCTNACPTGAISYDLPTPQ 245



 Score = 41.5 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V TENC LC    CV  CP     +G +  A+H  E  C+ CG+CE  CP   I
Sbjct: 424 VNTENCTLC--MSCVSTCPTMALTDGGDLPALHFVEQDCVQCGLCETACPEKVI 475


>gi|94266265|ref|ZP_01289971.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93453147|gb|EAT03615.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 248

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C +  CV  CP    Y+ +    + +   +CI C  C   CP DA   + E     
Sbjct: 121 CMQCNNPPCVRACPTKATYKDQQHGIVMMENRKCIGCKTCVIACPYDARFFNEETHAMD 179



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV 45
            CI CK   CV  CP D  +  E   A+   + CI   +
Sbjct: 153 KCIGCK--TCVIACPYDARFFNEETHAMDKCDFCIHTRL 189


>gi|86140247|ref|ZP_01058808.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85823050|gb|EAQ43264.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 657

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C    C++ CP        + ++I P  C  CG C   CP  AI  D       + +I
Sbjct: 285 GCSK--CLDHCPTSAISSAGDHVSIDPMICAGCGACAALCPSGAITYDAPATDAQFRRI 341



 Score = 36.9 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  ++C LC    CV +CP            L    + C+ CG+C   CP DAI  +
Sbjct: 504 VDQDSCTLCL--SCVSLCPSGALGDNPDLPQLRFQEEACLQCGICANTCPEDAISFE 558


>gi|325141137|gb|EGC63638.1| iron-sulfur cluster-binding protein [Neisseria meningitidis CU385]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDESACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|331647161|ref|ZP_08348255.1| putative oxidoreductase Fe-S subunit [Escherichia coli M605]
 gi|331043944|gb|EGI16080.1| putative oxidoreductase Fe-S subunit [Escherichia coli M605]
          Length = 239

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|300113806|ref|YP_003760381.1| hypothetical protein Nwat_1126 [Nitrosococcus watsonii C-113]
 gi|299539743|gb|ADJ28060.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
          Length = 993

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           TY     C+ C+   C  VCP          L +   + CI    C   C          
Sbjct: 817 TYFQPVPCMHCEKAPCELVCPTAATVHDSEGLNLQVYNRCIGTRFCSNNC---------P 867

Query: 61  PGLELWLKINSEYATQWPNITTKKES 86
             +  +  +  EYA   P +  +K  
Sbjct: 868 YKVRRFNFL--EYAKDMPALVAQKNP 891


>gi|295106206|emb|CBL03749.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 117

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPEC 50
           C+ C++  CV VCPV   Y+G++  + I  D CI C  C P  
Sbjct: 52 PCMQCENPPCVSVCPVQATYKGDDGIVVIDADRCIGCKYCTPRV 95


>gi|221114662|ref|XP_002155312.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, partial [Hydra magnipapillata]
          Length = 175

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 73  EERCIACKL--CEAICPAQAITIEAEPRPDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 130

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQK 99
                         N EY+  T    +  K++ L +  + +    K
Sbjct: 131 VEGP----------NFEYSTETHEELLYNKEKLLENGDRWEVEIAK 166


>gi|207857890|ref|YP_002244541.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709693|emb|CAR34043.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|168817770|ref|ZP_02829770.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344958|gb|EDZ31722.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086970|emb|CBY96740.1| putative oxidoreductase, Fe-S subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|197117888|ref|YP_002138315.1| electron transfer flavoprotein subunit alpha [Geobacter
          bemidjiensis Bem]
 gi|197087248|gb|ACH38519.1| electron transfer flavoprotein, alpha subunit [Geobacter
          bemidjiensis Bem]
          Length = 442

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V+   CI C    C   CPVD     E     I   +CI C  C   CP  AI+    P 
Sbjct: 17 VLEGRCIAC-GARCQSACPVDAIQMNEAGEPVIDASKCIGCVKCVKVCPAQAIEMAFTPE 75

Query: 63 LE 64
           +
Sbjct: 76 EK 77


>gi|23336655|ref|ZP_00121861.1| COG1146: Ferredoxin [Bifidobacterium longum DJO10A]
          Length = 97

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 34/53 (64%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +   E 
Sbjct: 4  KDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDDLPDEW 56


>gi|325267897|ref|ZP_08134546.1| respiratory nitrate reductase, beta subunit [Kingella denitrificans
           ATCC 33394]
 gi|324980583|gb|EGC16246.1| respiratory nitrate reductase, beta subunit [Kingella denitrificans
           ATCC 33394]
          Length = 523

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  +
Sbjct: 180 MMYL-PRLCEHCLNPTCVASCPSGSIYKREDDGIVLIDQDKCRGWRMCVSGCPYKKIYYN 238

Query: 59  T 59
            
Sbjct: 239 W 239


>gi|291287559|ref|YP_003504375.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884719|gb|ADD68419.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 187

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV  CP     + E+ +  ++   CI CG C   CP      D +
Sbjct: 64  SCNHCEKPMCVASCPTKAMQKREDGIVFVNYSACIGCGTCSEVCPYSVPVMDED 117


>gi|170026045|ref|YP_001722550.1| putative oxidoreductase Fe-S binding subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|169752579|gb|ACA70097.1| glutamate synthase, small subunit [Yersinia pseudotuberculosis
           YPIII]
          Length = 671

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE   
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSIQVIQEKCIGCKTCMIACPFGMMTVVTETVQ 110


>gi|126732920|ref|ZP_01748710.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126706626|gb|EBA05701.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 649

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             C  T C+++CP          +++ P  C  CG C   CP  AI  D  P  
Sbjct: 277 TGC--TRCLDLCPTGAITPDGEHVSVDPLICAGCGACSAVCPSGAISYDAPPVD 328



 Score = 36.9 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V  + C LC    CV +CP     +  +   +   E  C+ CG+C   CP +AI
Sbjct: 498 VDQDACTLCL--SCVSLCPSGALGDNPDRPELRFQEDACLQCGLCANVCPEEAI 549


>gi|118445132|ref|YP_879222.1| ferredoxin [Clostridium novyi NT]
 gi|253680812|ref|ZP_04861615.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|331270643|ref|YP_004397135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
          [Clostridium botulinum BKT015925]
 gi|118135588|gb|ABK62632.1| ferredoxin [Clostridium novyi NT]
 gi|253562661|gb|EES92107.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|329127193|gb|AEB77138.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Clostridium botulinum BKT015925]
          Length = 57

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + + ++C+ C    C   CPV    +G++   I  + CIDCG C   CPV AI  + 
Sbjct: 1  MAFKIGDSCVSC--GSCASECPVGAISQGDSQFEIDANSCIDCGNCANVCPVGAIAAEE 57


>gi|49658944|emb|CAF28571.1| putative oxidoreductase [Yersinia pseudotuberculosis]
          Length = 671

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE   
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSIQVIQEKCIGCKTCMIACPFGMMTVVTETVQ 110


>gi|54309047|ref|YP_130067.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum SS9]
 gi|46913479|emb|CAG20265.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum SS9]
          Length = 205

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF + E+ +     D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFEQTEDGIVRHDKDLCIGCGYCLFACPFGA 103


>gi|153948456|ref|YP_001402638.1| oxidoreductase Fe-S binding subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|152959951|gb|ABS47412.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pseudotuberculosis IP 31758]
          Length = 671

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE   
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSIQVIQEKCIGCKTCMIACPFGMMTVVTETVQ 110


>gi|283787133|ref|YP_003366998.1| hydrogenase-2 subunit [Citrobacter rodentium ICC168]
 gi|282950587|emb|CBG90256.1| hydrogenase-2 subunit [Citrobacter rodentium ICC168]
          Length = 328

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +  + D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYNKDVCTGCRYCMVACPYNVPKYDY 164


>gi|189423538|ref|YP_001950715.1| Fis family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189419797|gb|ACD94195.1| transcriptional regulator, Fis family [Geobacter lovleyi SZ]
          Length = 767

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 1  MTYVVT--ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M  ++T  E C  C    CV  CPV      E +  I  + CI CG C   CP  A
Sbjct: 1  MQPIITYKERCRTCY--SCVRTCPVKAIKVDEGYAEIIYERCIGCGNCLN-CPQKA 53


>gi|157164645|ref|YP_001466166.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Campylobacter concisus 13826]
 gi|112800391|gb|EAT97735.1| electron transport protein HydN [Campylobacter concisus 13826]
          Length = 189

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFNDNCIELHEEICIGCKMCTIACPYGAISSSAE 104


>gi|77918997|ref|YP_356812.1| glycerol dehydratase activating enzyme [Pelobacter carbinolicus DSM
           2380]
 gi|77545080|gb|ABA88642.1| glycerol dehydratase, cobalamin-independent, small subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 322

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPD-- 58
            V+ NCI C    C+EVC      + E       I  D C  CG C   C   AI     
Sbjct: 68  FVSNNCIGC--GKCLEVCKAGAIRKDETGAKGLIIDRDRCTLCGQCAKFCYAGAINIIGR 125

Query: 59  --TEPGLELWLKINSEYATQ 76
             + P L   ++ + ++  Q
Sbjct: 126 YLSVPELVTMIERDRKFYEQ 145


>gi|15921890|ref|NP_377559.1| hypothetical protein ST1591 [Sulfolobus tokodaii str. 7]
 gi|15622677|dbj|BAB66668.1| 484aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 484

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV       +F+        +CI  G C   CP + I          
Sbjct: 409 CLNCKTVDCANACPVGLTDMRASFIKKGEFKSFKCIGVGDCIEACPYNNIMFYD---FRS 465

Query: 66  WL--KINSE 72
           W+  K+N +
Sbjct: 466 WIRSKLNKK 474


>gi|148263632|ref|YP_001230338.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146397132|gb|ABQ25765.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 431

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 7   ENCILCKHTDCVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C  C    CV  CPV         D          I  + C+ CGVC   CPV AI+ 
Sbjct: 290 DRCNGC--GRCVAACPVAVAELITANDPLNPARKKARIDRENCLGCGVCVRSCPVAAIRL 347

Query: 58  DTEPG 62
           ++ P 
Sbjct: 348 ESRPQ 352


>gi|120600678|ref|YP_965252.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146291421|ref|YP_001181845.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120560771|gb|ABM26698.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563111|gb|ABP74046.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319428348|gb|ADV56422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens 200]
          Length = 228

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  +    +++   +C+ C  C   CP  
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVDAWKCVGCQYCIAACPYQ 143


>gi|327542020|gb|EGF28519.1| cyclic nucleotide-binding protein [Rhodopirellula baltica WH47]
          Length = 620

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           + C+ C    C+  CP    +  E+   + +    CI CG C   CP   I+ 
Sbjct: 502 QACMHCTDPVCMIGCPTGALHREESTGHVRVSESICIGCGTCAKGCPYGNIEM 554


>gi|320450817|ref|YP_004202913.1| nitrate reductase subunit beta [Thermus scotoductus SA-01]
 gi|320150986|gb|ADW22364.1| nitrate reductase, subunit beta [Thermus scotoductus SA-01]
          Length = 511

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + ++ ++C    +C   CP   +  + 
Sbjct: 184 CNHCLNPSCVAACPSGAIYKRAEDGVVLVNENKCKAWRMCVAACPYKKVYYNW 236


>gi|293416140|ref|ZP_06658780.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
 gi|291432329|gb|EFF05311.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
          Length = 644

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C  +CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIDCPFGVVEMVD 111


>gi|289192303|ref|YP_003458244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938753|gb|ADC69508.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 391

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVTE C+ C    CV  CPV      +    I   +CI C +C   CP +AI 
Sbjct: 134 VVTEACVGC--GICVPECPVSAITLEDGKAVIDKSKCIYCSICAQTCPWNAIF 184



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E CI C    CVEVCP +      EN + I P  C  C +C   CPV+A++ +
Sbjct: 202 VNAEKCIYCLK--CVEVCPGNMIKVDKENMIVIPPKSCPACKLCVNTCPVNALELE 255


>gi|260888301|ref|ZP_05899564.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838372|ref|YP_004412952.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Selenomonas sputigena ATCC 35185]
 gi|260861837|gb|EEX76337.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746136|gb|AEB99492.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Selenomonas sputigena ATCC 35185]
          Length = 56

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y ++E CI C    C   CPV+   EGE+   I  ++CI+CG C   CPV AI
Sbjct: 1  MAYKISEECISC--GSCAGTCPVEAISEGESQYVIDEEKCIECGACAEGCPVSAI 53


>gi|271498826|ref|YP_003331851.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270342381|gb|ACZ75146.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 184

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
            C  C+H  C++ CPV+ + + E+ + +  P  CI C  C   CP  A K + 
Sbjct: 56  ACNHCEHPACLDACPVEAYTKREDGIVVHDPARCIGCKNCLRSCPYGAPKFNE 108


>gi|238913616|ref|ZP_04657453.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|229825982|ref|ZP_04452051.1| hypothetical protein GCWU000182_01346 [Abiotrophia defectiva ATCC
          49176]
 gi|229789724|gb|EEP25838.1| hypothetical protein GCWU000182_01346 [Abiotrophia defectiva ATCC
          49176]
          Length = 56

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ + CI C    C  VCPV+C  EG     +    C+DCG CE  CP  AI  +
Sbjct: 1  MAHVINDECISC--GACASVCPVECISEGSVHYEVDASACVDCGACEESCPTGAIFQE 56


>gi|261339892|ref|ZP_05967750.1| nitrate reductase, beta subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288317802|gb|EFC56740.1| nitrate reductase, beta subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 514

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+   +  + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCAATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|213861424|ref|ZP_03385894.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 133

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+H  CV  CPV+ + + E+ + + +P+ CI C  C   CP  A + + E     
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKAE 114


>gi|253700341|ref|YP_003021530.1| aldo/keto reductase [Geobacter sp. M21]
 gi|251775191|gb|ACT17772.1| aldo/keto reductase [Geobacter sp. M21]
          Length = 316

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    CV  C  D     E    +   +CI CG C   CP   I
Sbjct: 269 CKGC--GACVPACTNDALKLVEGKAVVDESQCILCGYCGAACPEFMI 313


>gi|189424812|ref|YP_001951989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          lovleyi SZ]
 gi|189421071|gb|ACD95469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          lovleyi SZ]
          Length = 55

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M + +T++C  C    C + CPV+   E  +   I  D CIDCG C   CPV+AI 
Sbjct: 1  MAHTITDDCTNC--AACEDSCPVNAISEQGSKRVIDADTCIDCGACVDTCPVNAIH 54


>gi|159905554|ref|YP_001549216.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|159887047|gb|ABX01984.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 167

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C+EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91


>gi|51594748|ref|YP_068939.1| oxidoreductase Fe-S binding subunit [Yersinia pseudotuberculosis IP
           32953]
 gi|186893755|ref|YP_001870867.1| putative oxidoreductase Fe-S binding subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588030|emb|CAH19636.1| putative oxidoreductase [Yersinia pseudotuberculosis IP 32953]
 gi|186696781|gb|ACC87410.1| glutamate synthase, small subunit [Yersinia pseudotuberculosis
           PB1/+]
          Length = 671

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE   
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSIQVIQEKCIGCKTCMIACPFGMMTVVTETVQ 110


>gi|295100160|emb|CBK89249.1| glycyl-radical enzyme activating protein family [Eubacterium
           cylindroides T2-87]
          Length = 300

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            E C+ C    CV  CP          L    D CI C  CE  CP  AI  
Sbjct: 51  EEKCVRC--GTCVRNCPQHAIKIENFKLVFDRDACIHCKTCENNCPAGAINF 100



 Score = 33.4 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH 36
           + CI CK   C   CP        + ++I 
Sbjct: 81  DACIHCK--TCENNCPAGAINFIGDAVSID 108


>gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
 gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
          Length = 625

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C   CPV     + ++   I   +CI CG C   C   A+  +
Sbjct: 572 INPEKCKGCSK--CARNCPVGAITGKIKSPYVIDSAKCIKCGACLENCSFGAVYTE 625


>gi|157419250|gb|ABV55245.1| molybdopterin oxidoreductase iron-sulfur protein [Rhodothermus
           marinus]
          Length = 1040

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
            C+ C++  C  VCPV       + L  +  + CI    C   CP    + + 
Sbjct: 865 PCMHCENAPCESVCPVAATVHSPDGLNEMVYNRCIGTRYCSNNCPYKVRRFNW 917


>gi|153809516|ref|ZP_01962184.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185]
 gi|149127824|gb|EDM19047.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185]
          Length = 489

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  + CI CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHETCISCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  E CI C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHETCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|90413855|ref|ZP_01221842.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum 3TCK]
 gi|90325166|gb|EAS41669.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum 3TCK]
          Length = 205

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF + E+ +     D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFEQTEDGIVRHDKDLCIGCGYCLFACPFGA 103


>gi|320160607|ref|YP_004173831.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
 gi|319994460|dbj|BAJ63231.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
          Length = 310

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C    C  VCP        +   I  + C+ CG+C   C   A+    +P  
Sbjct: 235 VDEDKCIAC--GTCAGVCPFGAIQVNGH-AVIVAESCMGCGICVRHCSQGALSLQRDPSR 291

Query: 64  ELWLKI 69
              L+I
Sbjct: 292 GEPLEI 297


>gi|289191966|ref|YP_003457907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938416|gb|ADC69171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 141

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C+  CP +      + + +  D+CI CG+C   CP  AI+ D
Sbjct: 32 KCMHCDKNPCLYACPENAIERINDKVVVIKDKCIGCGLCALACPFGAIRID 82



 Score = 38.0 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 2/83 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + CI C    C   CP          +  +     D  +C+  CP  AI    E   
Sbjct: 59  VIKDKCIGC--GLCALACPFGAIRIDGVAIKCNGCYKRDVEICKEVCPTGAINNLEEILS 116

Query: 64  ELWLKINSEYATQWPNITTKKES 86
                   +++  +      K +
Sbjct: 117 NKLCNTLDKFSKLYAIYGGFKGA 139


>gi|269216343|ref|ZP_06160197.1| protein AegA [Slackia exigua ATCC 700122]
 gi|269130602|gb|EEZ61680.1| protein AegA [Slackia exigua ATCC 700122]
          Length = 207

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C    CV  CP    Y   + +A+  + CI C  C   CP  A    +     ++ 
Sbjct: 77  ACHHCVDAPCVNACPQGALYYDGDRVAVSMERCIGCRSCVMACPYGACDVVSRLEPVMFG 136

Query: 68  KI 69
            +
Sbjct: 137 DL 138


>gi|218779472|ref|YP_002430790.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760856|gb|ACL03322.1| Putative fusion protein, heterodisulfide reductase (HdrA)
           /F420-non-reducing hydrogenase (MvhD) [Desulfatibacillum
           alkenivorans AK-01]
          Length = 814

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKP 57
           V+TE+C  C    C EVCP +             ++   C  CG C  ECP  AI  
Sbjct: 594 VITEHCKAC--GKCAEVCPYNAISVDPKKKIPAVVNTAACAGCGTCGAECPFGAITM 648



 Score = 38.4 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID-- 42
           YVV   C  C   +C +VCPV    E                        I+ +EC+   
Sbjct: 252 YVVEGECTAC--GECAKVCPVVRPDEFNLGLSSRKAIYSPFPQAVPSSYVININECLGDN 309

Query: 43  ---CGVCEPECPVDAIKPDTEPGL 63
              C  C   C  + I        
Sbjct: 310 PSVCAKCVQACEKNCINFHMSDEQ 333


>gi|198275773|ref|ZP_03208304.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135]
 gi|198271402|gb|EDY95672.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135]
          Length = 321

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP +      N   I P +C  C  CE ECP  AI     P  +   +
Sbjct: 221 CIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCEMECPQQAIVAVNFPPRKPKAE 278



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP + I
Sbjct: 142 CLGC--GDCVSACQFDAIHMNPETGLPEVDESKCTACGACSKACPRNII 188


>gi|146312604|ref|YP_001177678.1| putative oxidoreductase Fe-S binding subunit [Enterobacter sp. 638]
 gi|145319480|gb|ABP61627.1| glutamate synthase, small subunit [Enterobacter sp. 638]
          Length = 658

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  C + CP        + + ++  +CI C  C   CP   ++    P  +  +K
Sbjct: 56  CHHCENAPCAQRCPNGAIARINDSVQVNQQKCIGCKACVVACPFGTMEMVVTPLADGHVK 115

Query: 69  INSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
            ++             +     A ++          +  
Sbjct: 116 ASAHKCDLC------HDRPQGPACVENCPADALTLVTEK 148


>gi|7321319|emb|CAB82187.1| nitrate reductase beta-subunit [Shewanella sp. SK-3-30-1]
          Length = 321

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 169 CEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYFNWK 222


>gi|18314194|ref|NP_560861.1| nitrate reductase beta subunit (narH) [Pyrobaculum aerophilum str.
           IM2]
 gi|18161786|gb|AAL65043.1| nitrate reductase beta subunit (narH) [Pyrobaculum aerophilum str.
           IM2]
          Length = 473

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C+  CP    Y+ E    + I  + C     C   CP   +  + +
Sbjct: 172 CNHCLNPSCLAACPRKAIYKREEDGIVLIDQNRCRGYRYCVAACPYKKVYYNWK 225


>gi|17555194|ref|NP_498595.1| hypothetical protein T20H4.5 [Caenorhabditis elegans]
 gi|3929363|sp|Q22619|NDUS8_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|4972961|gb|AAD34863.1|AF140272_1 NADH oxidoreductase complex I 23.8 kDa subunit [Caenorhabditis
           elegans]
 gi|459011|gb|AAA50662.1| Hypothetical protein T20H4.5 [Caenorhabditis elegans]
          Length = 212

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  + +  
Sbjct: 168 VEGP----------NFEYSTETHEELLYNKEKLLLNGDRWEPE 200


>gi|114321574|ref|YP_743257.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227968|gb|ABI57767.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 248

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPV 52
            C+ C+   CV VCP    Y+       + I  D CI C  C   CP 
Sbjct: 57  PCMQCEDATCVTVCPTGATYKDAEAGGVVFIDWDRCIGCKYCIVACPY 104


>gi|148255905|ref|YP_001240490.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. BTAi1]
 gi|156632578|sp|A5EK90|NUOI_BRASB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146408078|gb|ABQ36584.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. BTAi1]
          Length = 162

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K + L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKAKLLANGDRWEREISK 153


>gi|324999411|ref|ZP_08120523.1| formate dehydrogenase beta subunit [Pseudonocardia sp. P1]
          Length = 346

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I      
Sbjct: 166 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIDRREGD 222


>gi|320102332|ref|YP_004177923.1| Fe-S-cluster-containing hydrogenase components 1-like protein
            [Isosphaera pallida ATCC 43644]
 gi|319749614|gb|ADV61374.1| Fe-S-cluster-containing hydrogenase components 1-like protein
            [Isosphaera pallida ATCC 43644]
          Length = 1192

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 8    NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
             C  C++  C  VCPV+     +  L +   + CI    C   CP    + +     E  
Sbjct: 949  PCQHCENAPCEAVCPVNATVHSDEGLNLQAYNRCIGTRYCANNCPYKVRRFNWFNYNERQ 1008

Query: 67   LK-INSEYATQWPNITTKKESLPSAAKMDGVKQ 98
            L   N  +   +  +T +  ++    KM     
Sbjct: 1009 LGYTNLRWPKPYGPLTPR--AMEETLKMQKNPD 1039


>gi|296313314|ref|ZP_06863255.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296840194|gb|EFH24132.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|153006362|ref|YP_001380687.1| hydrogenase 2 protein HybA [Anaeromyxobacter sp. Fw109-5]
 gi|152029935|gb|ABS27703.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 293

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            V   C+ C    CV VC +   ++GE  +       C+ C  C+  CP +  +   
Sbjct: 101 FVKAQCMHCADPACVSVCMLGALHKGERGVVAYDVSRCVGCRYCQVACPFNVPRFQW 157


>gi|38637932|ref|NP_942906.1| respiratory nitrate reductase subunit [Ralstonia eutropha H16]
 gi|32527270|gb|AAP86020.1| respiratory nitrate reductase subunit [Ralstonia eutropha H16]
          Length = 516

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|86607899|ref|YP_476661.1| transcriptional regulator PatB [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|86556441|gb|ABD01398.1| transcriptional regulator PatB [Synechococcus sp.
          JA-2-3B'a(2-13)]
          Length = 550

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M Y ++ NCI C    CV+ CP       +    I+P  C DC        C   CP  A
Sbjct: 1  MAYQISGNCIGCN--ACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSA 58

Query: 55 IKPDT 59
           +P  
Sbjct: 59 PQPYE 63


>gi|86606494|ref|YP_475257.1| transcriptional regulator PatB [Synechococcus sp. JA-3-3Ab]
 gi|86555036|gb|ABC99994.1| transcriptional regulator PatB [Synechococcus sp. JA-3-3Ab]
          Length = 550

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M Y ++ NCI C    CV+ CP       +    I+P  C DC        C   CP  A
Sbjct: 1  MAYQISGNCIGCN--ACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSA 58

Query: 55 IKPDT 59
           +P  
Sbjct: 59 PQPYE 63


>gi|89897650|ref|YP_521137.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89337098|dbj|BAE86693.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 204

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C +  C   CPV   Y  E+  + I  D CI C  C   CP DA
Sbjct: 65  CNHCDNAPCESACPVRATYRTEDGTILIDYDRCIGCKYCMAACPYDA 111


>gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 436

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++C  C  T C+ VC VD    +  +   I  D+CI CG C   C  DAI
Sbjct: 382 YYITDDCKGC--TKCMNVCAVDAINGQVRSRHIIDADKCIRCGACRKICSFDAI 433


>gi|289191965|ref|YP_003457906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938415|gb|ADC69170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 164

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C    C EVCPV      + ++ ++ + CI CG+C   CP  AI  + +  
Sbjct: 44 CQHCASAPCKEVCPVSAIEHKDGYVYLNEEICIGCGLCALACPFGAIIMEDKAY 97


>gi|262402193|ref|ZP_06078754.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC586]
 gi|262350975|gb|EEZ00108.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC586]
          Length = 202

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 626

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           +  + CI C  T C +VCP             I+ ++CI+CG C   C   +I
Sbjct: 573 IDPKKCIGC--TACTKVCPTKAISGEVKKAHVINKEKCINCGACSSTCKFSSI 623



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           + CP           +I P +CI C  C   CP  AI  + +        IN E
Sbjct: 558 KHCPAGVCT-ALLKYSIDPKKCIGCTACTKVCPTKAISGEVKKAHV----INKE 606


>gi|268593589|ref|ZP_06127810.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Providencia rettgeri DSM 1131]
 gi|291310806|gb|EFE51259.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Providencia rettgeri DSM 1131]
          Length = 184

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
            C  C++  C+E CPV+ + + E+ + + +P+ CI C  C   CP  A   + 
Sbjct: 56  ACNHCENPACLEACPVEAYTKREDGIVVNNPENCIGCRNCIRSCPYGAPTFNE 108


>gi|218887556|ref|YP_002436877.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758510|gb|ACL09409.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 188

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C  C++  C+E CPV  + + E+ + +   D CI CG C   CP  A      P +   
Sbjct: 58  ACNHCENPVCLEQCPVKAYTKREDGIVVHDQDACIGCGNCVRSCPYGA------PKMNPV 111

Query: 67  LKINSEYATQWPNITTKKES 86
            K   + +  W  I    + 
Sbjct: 112 EKRAEKCSMCWQRIDAGLDP 131


>gi|205352736|ref|YP_002226537.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272517|emb|CAR37412.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627804|gb|EGE34147.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 514

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + I  D+C D  +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRDWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|159043060|ref|YP_001531854.1| formate dehydrogenase iron-sulfur subunit [Dinoroseobacter shibae
           DFL 12]
 gi|157910820|gb|ABV92253.1| formate dehydrogenase iron-sulfur subunit [Dinoroseobacter shibae
           DFL 12]
          Length = 198

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTDDAVVLHSKDTCIGCGYCFYACPFGAPQY 104


>gi|91210884|ref|YP_540870.1| putative oxidoreductase Fe-S subunit [Escherichia coli UTI89]
 gi|117623852|ref|YP_852765.1| putative oxidoreductase Fe-S subunit [Escherichia coli APEC O1]
 gi|237705617|ref|ZP_04536098.1| iron-sulfur cluster-binding protein [Escherichia sp. 3_2_53FAA]
 gi|331657646|ref|ZP_08358608.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA206]
 gi|91072458|gb|ABE07339.1| putative oxidoreductase Fe-S subunit [Escherichia coli UTI89]
 gi|115512976|gb|ABJ01051.1| putative oxidoreductase Fe-S subunit [Escherichia coli APEC O1]
 gi|226900374|gb|EEH86633.1| iron-sulfur cluster-binding protein [Escherichia sp. 3_2_53FAA]
 gi|294493141|gb|ADE91897.1| iron-sulfur cluster-binding protein [Escherichia coli IHE3034]
 gi|307626843|gb|ADN71147.1| putative oxidoreductase Fe-S subunit [Escherichia coli UM146]
 gi|315286339|gb|EFU45775.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 110-3]
 gi|331055894|gb|EGI27903.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA206]
          Length = 239

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|120600350|ref|YP_964924.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560443|gb|ABM26370.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|319424953|gb|ADV53027.1| sulfur reductase, FeS subunit, PhsB [Shewanella putrefaciens 200]
          Length = 188

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHADKCVGCMYCVAACPYKVRFMNPE 112


>gi|146291718|ref|YP_001182142.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563408|gb|ABP74343.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 188

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHADKCVGCMYCVAACPYKVRFMNPE 112


>gi|328952548|ref|YP_004369882.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
 gi|328452872|gb|AEB08701.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
          Length = 1503

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
            V  E C++C    C   CP       E+  + I P EC  CG C   CP   I+
Sbjct: 1421 VDREKCVVC--MTCARTCPFGAPKVAEDGFIDIDPAECHGCGNCASACPRRLIQ 1472


>gi|170682806|ref|YP_001743584.1| iron-sulfur cluster-binding protein [Escherichia coli SMS-3-5]
 gi|170520524|gb|ACB18702.1| iron-sulfur cluster-binding protein [Escherichia coli SMS-3-5]
          Length = 239

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|91784376|ref|YP_559582.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
 gi|91688330|gb|ABE31530.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
          Length = 413

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CPVD     +N   +  D C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPVDAITHDDNNYVVKADICNGCMACVPPCPTGAIDN 66


>gi|32477812|ref|NP_870806.1| oxidoreductase, Fe-S subunit [Rhodopirellula baltica SH 1]
 gi|32448369|emb|CAD77883.1| putative oxidoreductase, Fe-S subunit [Rhodopirellula baltica SH 1]
          Length = 620

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           + C+ C    C+  CP    +  E+   + +    CI CG C   CP   I+ 
Sbjct: 502 QACMHCTDPVCMIGCPTGALHREESTGHVRVSESICIGCGTCAKGCPYGNIEM 554


>gi|332296916|ref|YP_004438838.1| methyl-accepting chemotaxis sensory transducer [Treponema
          brennaborense DSM 12168]
 gi|332180019|gb|AEE15707.1| methyl-accepting chemotaxis sensory transducer [Treponema
          brennaborense DSM 12168]
          Length = 690

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V    C+ C    C+ VCP     +G      ++ D CI CG C   C   A     +  
Sbjct: 11 VDKSKCVNC--HRCITVCPAKMCNDGSGNYVGVNTDLCIGCGECIEACSHGARVGLDDAD 68

Query: 63 LELWLKINSE 72
                 N E
Sbjct: 69 DFFRAVKNGE 78


>gi|296533719|ref|ZP_06896269.1| formate dehydrogenase [Roseomonas cervicalis ATCC 49957]
 gi|296265941|gb|EFH12016.1| formate dehydrogenase [Roseomonas cervicalis ATCC 49957]
          Length = 198

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPV CFY   + +     D CI CG C   CP  A + 
Sbjct: 51  ISMACMHCTDAPCAAVCPVSCFYTTADAIVLHDKDLCIGCGYCFYACPFGAPQY 104


>gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
 gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
          Length = 602

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++TE C  C  T C  +CPV     E      I+ + CI CG C   C  +AI
Sbjct: 542 IITEKCTGC--TACAIMCPVKAISGERGKPHLINQEACIKCGTCYEVCRFNAI 592


>gi|238790316|ref|ZP_04634089.1| Protein nrfC [Yersinia frederiksenii ATCC 33641]
 gi|238721580|gb|EEQ13247.1| Protein nrfC [Yersinia frederiksenii ATCC 33641]
          Length = 212

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    Y  +    + + PD C+ C  C   CP  
Sbjct: 80  SCQHCDKAPCVDVCPTGASYRDKKTGIVDVDPDLCVGCQYCIAACPYR 127


>gi|121607275|ref|YP_995082.1| RnfABCDGE type electron transport complex subunit B
           [Verminephrobacter eiseniae EF01-2]
 gi|121551915|gb|ABM56064.1| electron transport complex, RnfABCDGE type, B subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 220

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++  + CI C  T C++VCP D      +    I    C  C +C P CPVD I  DT
Sbjct: 86  AFIDEDWCIGC--TLCLKVCPTDAIVGASKMMHTIIERYCTGCELCLPVCPVDCIALDT 142


>gi|73538828|ref|YP_299195.1| respiratory nitrate reductase beta subunit [Ralstonia eutropha
           JMP134]
 gi|72122165|gb|AAZ64351.1| respiratory nitrate reductase beta subunit [Ralstonia eutropha
           JMP134]
          Length = 515

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|116624720|ref|YP_826876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Solibacter usitatus Ellin6076]
 gi|116227882|gb|ABJ86591.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
          Solibacter usitatus Ellin6076]
          Length = 83

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C   K   CV+ CPVDC +  +          L + PD+CIDCG C P CP 
Sbjct: 1  MAYVITDTCT--KDELCVQACPVDCIHPKQDEAGFAEAPQLYVKPDDCIDCGACVPVCPT 58

Query: 53 DAIK--PDTEPGLELWLKINS 71
          ++I    +       +  IN+
Sbjct: 59 NSIFVLDELPEEYAKFADINA 79


>gi|289191701|ref|YP_003457642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938151|gb|ADC68906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 389

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVTE C+ C    CV  CPV      +    I   +CI C +C   CP +AI 
Sbjct: 135 VVTEACVGC--GICVPECPVSAITLEDGKAVIDKSKCIYCSICAQTCPWNAIF 185



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E CI C    CVEVCP +      EN + I P  C  C +C   CPV+A++ +
Sbjct: 203 VNAEKCIYCLK--CVEVCPGNMIKVDKENMIVIPPKSCPACKLCVNTCPVNALELE 256


>gi|302867706|ref|YP_003836343.1| formate dehydrogenase subunit beta [Micromonospora aurantiaca ATCC
           27029]
 gi|302570565|gb|ADL46767.1| formate dehydrogenase beta subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 347

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I  
Sbjct: 167 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCISACPYGVIDQ 219


>gi|268679825|ref|YP_003304256.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617856|gb|ACZ12221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 154

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C+   C+ +CP       E F+ +    C+ CG C   CP  AI    E      LK
Sbjct: 60  CMHCETPSCLAICPHGVISLEEGFIKLDETACVGCGCCALACPYGAISMVKEDERVYALK 119

Query: 69  INSEY 73
            N  +
Sbjct: 120 CNLCF 124


>gi|257790376|ref|YP_003180982.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488822|ref|ZP_07947354.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833713|ref|ZP_08166128.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257474273|gb|ACV54593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912076|gb|EFV33653.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485253|gb|EGC87723.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 193

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C+   CV VCP    Y   +  + +  ++CI C  C   CP      +   
Sbjct: 53  YFLPTMCQQCQDAPCVNVCPTGASYRDADGMVLVDKEKCIGCKYCMMACPYGVRSWNAAE 112


>gi|189460038|ref|ZP_03008823.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136]
 gi|189433199|gb|EDV02184.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136]
          Length = 321

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P +C  C  CE ECP +AI
Sbjct: 218 TAACIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCETECPQNAI 265



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP + I
Sbjct: 142 CLGC--GDCVSACQFDAIHMNPETGLPEVDESKCTACGACSKACPRNII 188


>gi|220915989|ref|YP_002491293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953843|gb|ACL64227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 310

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C+   C+E CP       E   + I PD C  CG C   CP   +    + 
Sbjct: 127 SDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVVDRREDD 183


>gi|159905555|ref|YP_001549217.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|159887048|gb|ABX01985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 138

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +   C+ C+   C+  CP D   + ++ + I P++CI C +C   CPV AI  D
Sbjct: 31 IPIRCMHCEDAPCLNACPEDAIKKIDDKVVIEPEKCIGCALCAEVCPVGAIVID 84


>gi|117618154|ref|YP_857269.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559561|gb|ABK36509.1| 4Fe-4S binding domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 222

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    +    +  + I+PD C+ C  C   CP  
Sbjct: 92  SCQHCDNAPCVHVCPTGASHIRAEDGIVDINPDLCVGCRYCLAACPYQ 139


>gi|86157250|ref|YP_464035.1| formate dehydrogenase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773761|gb|ABC80598.1| formate dehydrogenase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 310

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C+   C+E CP       E   + I PD C  CG C   CP   +    + 
Sbjct: 127 SDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVVDRREDD 183


>gi|117922054|ref|YP_871246.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614386|gb|ABK49840.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 188

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPYKVRFMNPE 112


>gi|89895803|ref|YP_519290.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219670234|ref|YP_002460669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89335251|dbj|BAE84846.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219540494|gb|ACL22233.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 206

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           NC  C +  CV+ CPV   Y+  E+ + I   D+CI C  C   CP   ++ 
Sbjct: 63  NCQHCANPACVKACPVGATYKREEDGIVIQDYDKCIGCRYCMVACPYSGVRQ 114


>gi|303258408|ref|ZP_07344411.1| protein NrfC [Burkholderiales bacterium 1_1_47]
 gi|331000576|ref|ZP_08324245.1| thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
 gi|302858854|gb|EFL81942.1| protein NrfC [Burkholderiales bacterium 1_1_47]
 gi|329571247|gb|EGG52943.1| thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
          Length = 247

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV VCP    +       + + PD C+ C  C   CP +    ++E
Sbjct: 117 SCQQCQDAPCVRVCPTGAAHRDPKTGIVTMDPDRCVGCKYCIAACPYNVRYINSE 171


>gi|300819760|ref|ZP_07099948.1| nitrate reductase, beta subunit [Escherichia coli MS 107-1]
 gi|300527641|gb|EFK48703.1| nitrate reductase, beta subunit [Escherichia coli MS 107-1]
          Length = 395

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|312116310|ref|YP_004013906.1| NADH-quinone oxidoreductase, chain I [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221439|gb|ADP72807.1| NADH-quinone oxidoreductase, chain I [Rhodomicrobium vannielii ATCC
           17100]
          Length = 163

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 21/104 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                       I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P  E   +   E       +  K++ L +  + + +  K
Sbjct: 119 V--EGPNFEFATETREEL------LYDKEKLLANGDRWERILAK 154


>gi|261391743|emb|CAX49192.1| putative ferredoxin [Neisseria meningitidis 8013]
 gi|325197493|gb|ADY92949.1| iron-sulfur cluster-binding protein [Neisseria meningitidis G2136]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|258690622|gb|ACV88073.1| NarH [Halomonas sp. HGDK1]
          Length = 323

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 151 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 209

Query: 59  TE 60
            +
Sbjct: 210 WK 211


>gi|255067077|ref|ZP_05318932.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sicca ATCC 29256]
 gi|255048673|gb|EET44137.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sicca ATCC 29256]
          Length = 282

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C+  CPVD      +    +  DEC  CG+C P CPVD I  D  
Sbjct: 73  ALIDEAACIGC--TACIRACPVDAIMGASKFMHTVISDECTGCGLCLPPCPVDCI--DMI 128

Query: 61  PGLELWLKINSEYAT 75
           P  + +L      + 
Sbjct: 129 PSEQEYLPTARSLSR 143


>gi|254805750|ref|YP_003083971.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|254669291|emb|CBA08254.1| putative ferredoxin [Neisseria meningitidis alpha14]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
 gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
          Length = 599

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ E C  C  T C   CP +     +     I    CI CG C   C  +AI
Sbjct: 542 IIPEKCTGC--TACAIFCPANAITGEKLKPHEIDQSACIKCGTCYEVCRFNAI 592


>gi|240849392|ref|NP_001155795.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondri
           [Acyrthosiphon pisum]
 gi|239789288|dbj|BAH71275.1| ACYPI009382 [Acyrthosiphon pisum]
          Length = 206

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 104 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  K +  
Sbjct: 162 VEGP----------NFEYSTETHEELLYNKEKLLNNGDKWESE 194


>gi|253698924|ref|YP_003020113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251773774|gb|ACT16355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 368

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C++ C        E    I P  C+ C  C   C   AI         L ++
Sbjct: 195 CNGC--GLCLKSCAHAAIAIIEGKAQIDPAACVGCSRCITACQKKAINIQWNESAALVMR 252

Query: 69  INSEYAT 75
             +EYA 
Sbjct: 253 KMAEYAK 259


>gi|170290379|ref|YP_001737195.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174459|gb|ACB07512.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 648

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V +E C  C    CVE CP       E    + P  C+ CG+C+  CP  AI+       
Sbjct: 577 VNSELCTGC--GACVEECPFSAIVLEEGKAKVLPLACMGCGICQGACPTGAIERRLYDHG 634

Query: 64  E 64
           +
Sbjct: 635 Q 635



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 27/87 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECID-- 42
           YV  + C+ C    C E CPV+   E                        I  + C+   
Sbjct: 237 YVDQDKCVAC--GICAESCPVEVLNEWYARLGKRKAAYIPFPQSVPRAYVIDRENCLFFR 294

Query: 43  ---CGVCEPECPVDAIKPDTEPGLELW 66
              C  CE  CP  AI  D       +
Sbjct: 295 DGSCRKCEEVCPAKAI--DLSESDGEF 319


>gi|167837191|ref|ZP_02464074.1| nitrate reductase, beta subunit [Burkholderia thailandensis MSMB43]
          Length = 517

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSVYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|218778029|ref|YP_002429347.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759413|gb|ACL01879.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 352

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E CI C    C E C +D     +    ++PD CI CGVC  +CP DA+    +   
Sbjct: 273 VDDEKCIAC--GACAEACHMDAITVEDA-AFVNPDRCIGCGVCVSQCPSDAMAYQQKKQP 329

Query: 64  ELWL 67
           + ++
Sbjct: 330 DQYV 333


>gi|219670113|ref|YP_002460548.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540373|gb|ACL22112.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 367

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C   CP         F  I    CI CG C   C   AI  + +   
Sbjct: 190 VNEERCTAC--GKCKNWCPASAITVAG-FARIDEKLCIGCGECAVTCTFKAIAVNWKTTP 246

Query: 64  E 64
           +
Sbjct: 247 D 247


>gi|89895690|ref|YP_519177.1| hypothetical protein DSY2944 [Desulfitobacterium hafniense Y51]
 gi|89335138|dbj|BAE84733.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 367

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C   CP         F  I    CI CG C   C   AI  + +   
Sbjct: 190 VNEERCTAC--GKCKNWCPASAITVAG-FARIDEKLCIGCGECAVTCTFKAIAVNWKTTP 246

Query: 64  E 64
           +
Sbjct: 247 D 247


>gi|119990|sp|P00195|FER_CLOPA RecName: Full=Ferredoxin
 gi|144806|gb|AAA83524.1| ferredoxin [Clostridium pasteurianum]
 gi|208373|gb|AAA73179.1| ferredoxin [synthetic construct]
          Length = 56

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + ++C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A   +
Sbjct: 1  MAYKIADSCVSC--GACASECPVNAISQGDSIFVIDADTCIDCGNCANVCPVGAPVQE 56


>gi|145220489|ref|YP_001131198.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206653|gb|ABP37696.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 199

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++T C+  CP    Y  E+ +  ++ D CI C  C   CP DA        ++   
Sbjct: 60  CMHCENTPCLTACPTGATYMTEDGIVKVNYDRCIGCYACCIACPYDARYAYDGEDVKKEE 119

Query: 68  KI 69
           ++
Sbjct: 120 EV 121


>gi|261344832|ref|ZP_05972476.1| hydrogenase-2 operon protein HybA [Providencia rustigianii DSM
           4541]
 gi|282567281|gb|EFB72816.1| hydrogenase-2 operon protein HybA [Providencia rustigianii DSM
           4541]
          Length = 349

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K   +  
Sbjct: 107 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIVHYDPDICTGCRYCMVGCPFNIPKYAYDDK 166

Query: 63  L 63
            
Sbjct: 167 F 167


>gi|159042495|ref|YP_001541747.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldivirga maquilingensis IC-167]
 gi|157921330|gb|ABW02757.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga
           maquilingensis IC-167]
          Length = 651

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIKPD 58
           VV +   CI CK  DC + CPV       +F+     +   CI  G C   CP + I   
Sbjct: 565 VVKDPGLCIECKTKDCAKACPVGNSNMPGSFIKKGYYKSSTCIGVGDCVEACPYNNIIFY 624

Query: 59  T 59
            
Sbjct: 625 D 625


>gi|87196499|ref|NP_777243.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Bos taurus]
 gi|81674803|gb|AAI09907.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Bos taurus]
          Length = 212

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAVCPAQAIIIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 168 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 200


>gi|15676135|ref|NP_273266.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis MC58]
 gi|7225430|gb|AAF40665.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]
 gi|316985127|gb|EFV64079.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           meningitidis H44/76]
 gi|325199417|gb|ADY94872.1| iron-sulfur cluster-binding protein [Neisseria meningitidis H44/76]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|84393094|ref|ZP_00991859.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio splendidus
           12B01]
 gi|84376251|gb|EAP93134.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio splendidus
           12B01]
          Length = 228

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP        E
Sbjct: 98  SCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACPYQVRFFHPE 152


>gi|328951353|ref|YP_004368688.1| nitrate reductase, beta subunit [Marinithermus hydrothermalis DSM
           14884]
 gi|328451677|gb|AEB12578.1| nitrate reductase, beta subunit [Marinithermus hydrothermalis DSM
           14884]
          Length = 503

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + ++ ++C    +C   CP   +  + 
Sbjct: 185 CNHCLNPACVAACPSGAIYKRAEDGVVLVNENKCKAWRMCVAACPYKKVYYNW 237


>gi|325261134|ref|ZP_08127872.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Clostridium sp. D5]
 gi|324032588|gb|EGB93865.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Clostridium sp. D5]
          Length = 860

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E C  C     VE CP+      +  + I  D+C  CG C  +CP   I+  T
Sbjct: 715 EKCRGCGTCQVVEGCPIKIAELADGKILIDDDKCNHCGRCVGKCPFKVIEKYT 767


>gi|304389020|ref|ZP_07371066.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
 gi|304337001|gb|EFM03189.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|300939008|ref|ZP_07153705.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 21-1]
 gi|300456078|gb|EFK19571.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 21-1]
          Length = 239

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|300694467|ref|YP_003750440.1| nitrate reductase 1, fe-s (beta) subunit [Ralstonia solanacearum
           PSI07]
 gi|299076504|emb|CBJ35829.1| nitrate reductase 1, Fe-S (beta) subunit [Ralstonia solanacearum
           PSI07]
          Length = 517

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSVYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|254670133|emb|CBA05130.1| putative ferredoxin [Neisseria meningitidis alpha153]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|256810831|ref|YP_003128200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256794031|gb|ACV24700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 164

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C    C EVCPV      + ++ ++ + CI CG+C   CP  AI  D +  
Sbjct: 44 CQHCASAPCKEVCPVSAIEHKDGYVYLNEEVCIGCGLCALACPFGAITLDDKAY 97


>gi|239927159|ref|ZP_04684112.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces ghanaensis
           ATCC 14672]
          Length = 235

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I    + 
Sbjct: 145 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDQRPDD 201


>gi|225637770|gb|ACN97371.1| NarH [Marinobacter hydrocarbonoclasticus]
          Length = 321

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 156 CEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYFNWK 209


>gi|212223688|ref|YP_002306924.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
 gi|212008645|gb|ACJ16027.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
          Length = 163

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
          V  NC  C+   C+EVCP    Y  E+  + I   +CI C +C   CP      D
Sbjct: 41 VPLNCRHCEKAPCIEVCPTKAIYRDEDGAVVIDESKCIGCYMCSAVCPYAIPIVD 95


>gi|205353583|ref|YP_002227384.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273364|emb|CAR38335.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628679|gb|EGE35022.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 632

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ E C  C    C   CP +    E      I  D+CI CG+C  +C   AI
Sbjct: 578 IIPEKCKSCSL--CARSCPNNAISGERGKPYVIDQDKCIKCGLCVTKCKFGAI 628


>gi|186476296|ref|YP_001857766.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          phymatum STM815]
 gi|184192755|gb|ACC70720.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          phymatum STM815]
          Length = 416

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D     +    + PD C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAIQHDDTNYVVMPDVCNGCMACVPPCPTGAIDN 66


>gi|90418569|ref|ZP_01226481.1| formate dehydrogenase, iron-sulfur binding subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338241|gb|EAS51892.1| formate dehydrogenase, iron-sulfur binding subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 198

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCF+  E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFFTTEDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|2105094|emb|CAA71211.1| nitrate reductase beta subunit [Thermus thermophilus]
          Length = 511

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + ++ ++C    +C   CP   +  + 
Sbjct: 184 CNHCLNPACVAACPSGAIYKRAEDGVVLVNENKCKAWRMCVAACPYKKVYYNW 236


>gi|189347872|ref|YP_001944401.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189342019|gb|ACD91422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 188

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C++  CV  CP    +  E+    I+   C  C  C   CP DA     E  ++
Sbjct: 58  SERCQHCENAPCVTYCPTRASHYAEDGTVQINRSLCTGCKACMAACPYDARYVHPEGYVD 117

Query: 65  L 65
            
Sbjct: 118 K 118


>gi|219667337|ref|YP_002457772.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219537597|gb|ACL19336.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 192

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++  C  CK   CVE CP    ++ EN +      +CI C  C   CP    +   E 
Sbjct: 52  YYLSITCNHCKEPKCVEGCPTQAMHKLENGIVAHDKSKCIGCRYCTWSCPYGVPQFIEET 111

Query: 62  GL 63
           G 
Sbjct: 112 GQ 113


>gi|313206685|ref|YP_004045862.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Riemerella anatipestifer DSM 15868]
 gi|312446001|gb|ADQ82356.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Riemerella anatipestifer DSM 15868]
 gi|315023752|gb|EFT36754.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Riemerella anatipestifer RA-YM]
 gi|325335875|gb|ADZ12149.1| Fe-S-cluster-containing hydrogenase components 1 [Riemerella
           anatipestifer RA-GD]
          Length = 1016

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV     G+     +  + CI    C   CP    + +         
Sbjct: 839 CQHCNHAPCETVCPVAATSHGKQGQNQMAYNRCIGTRYCANNCPYKVRRFNWFTYN---- 894

Query: 68  KINSEY 73
            +N ++
Sbjct: 895 -LNDKF 899


>gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
 gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
          Length = 526

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + E+CI C    C  +CP +    E      I+ D+CI CG C+  CP++AI
Sbjct: 472 YTIGEDCIGC--GKCKRLCPNEAIAGEARKKHEINQDKCIKCGQCKDNCPINAI 523


>gi|163783460|ref|ZP_02178451.1| cytochrome b/b6-like protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881224|gb|EDP74737.1| cytochrome b/b6-like protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 651

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ + C  C+   C E CP +  Y       E    +  D+C  CG+C   C  +A   D
Sbjct: 297 VIEDRCEGCR--QCFEDCPYEAIYMKRISPEEEKAYVIEDKCAGCGICVASCNYNANVID 354

Query: 59  TEPGL 63
           T P  
Sbjct: 355 TVPYE 359



 Score = 35.7 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 4/55 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG--VCEPECPVDA 54
            YV+ + C  C    CV  C  +              E       +    CP  A
Sbjct: 329 AYVIEDKCAGC--GICVASCNYNANVIDTVPYEGILKEVELQRPELLVFRCPFSA 381


>gi|317483955|ref|ZP_07942892.1| nitrate reductase [Bilophila wadsworthia 3_1_6]
 gi|316924829|gb|EFV45978.1| nitrate reductase [Bilophila wadsworthia 3_1_6]
          Length = 489

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +    C     C   CP   +  + +     
Sbjct: 181 CEHCLNPACVASCPSGAMYKRDEDGIVLVDQSRCRGWRYCVSGCPYKKVYFNWKTHRSE 239


>gi|315505893|ref|YP_004084780.1| formate dehydrogenase beta subunit [Micromonospora sp. L5]
 gi|315412512|gb|ADU10629.1| formate dehydrogenase beta subunit [Micromonospora sp. L5]
          Length = 347

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I  
Sbjct: 167 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCISACPYGVIDQ 219


>gi|253582598|ref|ZP_04859819.1| electron transport complex protein [Fusobacterium varium ATCC
           27725]
 gi|251835468|gb|EES64008.1| electron transport complex protein [Fusobacterium varium ATCC
           27725]
          Length = 333

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ E C+ C  T C +VCPV     E +    I  ++CI CG+C  +C + AIK +    
Sbjct: 274 IIEEKCVGC--TLCAKVCPVGAVEGELKAKHKIDQEKCIGCGLCFDKCKLKAIKMNVIER 331

Query: 63  LE 64
            +
Sbjct: 332 RD 333



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C    C + CPVD      N   I P++CI CG+C  +CP +AIK + +   +  +
Sbjct: 217 ACIGC--GLCKKACPVDAITVENNLAKIDPEKCIQCGLCAAKCPTNAIKSEIKEVKKAEI 274



 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 14  HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
           H DC  VCPV+     +  +  ++ D+CI CG+C+  CP   I  
Sbjct: 146 HGDCERVCPVNAIKVNDKGIAEVNEDKCISCGLCQKACPKKVISM 190


>gi|268590651|ref|ZP_06124872.1| hydrogenase-2 operon protein HybA [Providencia rettgeri DSM 1131]
 gi|291314044|gb|EFE54497.1| hydrogenase-2 operon protein HybA [Providencia rettgeri DSM 1131]
          Length = 328

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +      C  C  C   CP +  K   +  
Sbjct: 106 IKKQCMHCVDPNCVSVCPVQALKKDPKTGIVHYDASVCTGCRYCMVACPFNIPKYAYDDK 165

Query: 63  L 63
            
Sbjct: 166 F 166


>gi|212711148|ref|ZP_03319276.1| hypothetical protein PROVALCAL_02220 [Providencia alcalifaciens DSM
           30120]
 gi|212686316|gb|EEB45844.1| hypothetical protein PROVALCAL_02220 [Providencia alcalifaciens DSM
           30120]
          Length = 354

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K   +  
Sbjct: 107 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIVHYDPDICTGCRYCMVGCPFNIPKYAYDDK 166

Query: 63  L 63
            
Sbjct: 167 F 167


>gi|197116685|ref|YP_002137112.1| iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197086045|gb|ACH37316.1| iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
          Length = 368

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C++ C        E    I P  C+ C  C   C   AI         L ++
Sbjct: 195 CNGCE--ACLKSCAHAAIAIIEGKAQIDPAACVGCSRCITACQRKAINIQWNESASLVMR 252

Query: 69  INSEYAT 75
             +EYA 
Sbjct: 253 KMAEYAK 259


>gi|134100101|ref|YP_001105762.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291002905|ref|ZP_06560878.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912724|emb|CAM02837.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 300

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 120 SDVCKHCTHAACLDVCPTGALFRTEYGTVVVQDDVCNGCGYCVPACPYGVI 170


>gi|121634081|ref|YP_974326.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|120865787|emb|CAM09516.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|325133026|gb|EGC55699.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M6190]
 gi|325139098|gb|EGC61644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           ES14902]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|15678433|ref|NP_275548.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621468|gb|AAB84911.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 261

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT+ C  C    C   CP       +    +    CI CG C   CP DA++ + E
Sbjct: 138 VTDRCTAC--GTCTRFCPTGAIQLDKEIAVVDESICIGCGACVNVCPSDAVELERE 191



 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C+ C    C E CP       +  + +  D+CI C VC   CPV A+K +
Sbjct: 203 VDQDACVECL--VCEENCPTGAIRIEDGEVVVDKDKCILCEVCSTRCPVAALKLE 255



 Score = 36.1 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-------HPDECIDCGVCEPECPVD 53
             V    CI C    CV VCP D    E E    I         D C++C VCE  CP  
Sbjct: 164 AVVDESICIGC--GACVNVCPSDAVELERELGPVIETRRLLVDQDACVECLVCEENCPTG 221

Query: 54  AIKPDTEP 61
           AI+ +   
Sbjct: 222 AIRIEDGE 229


>gi|254793288|ref|YP_003078125.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O157:H7
           str. TW14359]
 gi|254592688|gb|ACT72049.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O157:H7
           str. TW14359]
          Length = 222

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137


>gi|152993080|ref|YP_001358801.1| molybdopterin oxidoreductase, iron sulfur subunit [Sulfurovum sp.
           NBC37-1]
 gi|151424941|dbj|BAF72444.1| molybdopterin oxidoreductase, iron sulfur subunit [Sulfurovum sp.
           NBC37-1]
          Length = 535

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           +C  C   +C+  CP + + + +N +       CI C  C   CP +
Sbjct: 95  SCNHCIDPECLRGCPTESYIKLDNGIVWHDDPSCIGCQYCTWNCPYE 141


>gi|157376694|ref|YP_001475294.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319068|gb|ABV38166.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 231

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV+VCP    Y       + ++PD+C+ C  C   CP  
Sbjct: 99  SCQHCEDAPCVKVCPTGAAYIDSETGIVGVNPDKCVGCQYCIAACPYQ 146


>gi|170743893|ref|YP_001772548.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168198167|gb|ACA20114.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 320

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPV 52
           ++ C  C +  C+E CP    ++ E   + +  D C  CG C P CP 
Sbjct: 118 SDVCKHCHNAPCLEACPTGALFKTEFDTVVVQQDICNGCGYCVPACPF 165


>gi|116696202|ref|YP_841778.1| respiratory nitrate reductase beta chain (NarH) [Ralstonia eutropha
           H16]
 gi|113530701|emb|CAJ97048.1| respiratory nitrate reductase beta chain (NarH) [Ralstonia eutropha
           H16]
          Length = 516

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|332981958|ref|YP_004463399.1| Fis family sigma-54 specific transcriptional regulator [Mahella
          australiensis 50-1 BON]
 gi|332699636|gb|AEE96577.1| sigma54 specific transcriptional regulator, Fis family [Mahella
          australiensis 50-1 BON]
          Length = 869

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  CPV      +    I    CI CG C   C  +A
Sbjct: 12 KCRQCY--SCVRNCPVKAVRIKDGQAEIIQTRCIQCGNCIKHCSQNA 56


>gi|312128363|ref|YP_003993237.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor hydrothermalis 108]
 gi|312134414|ref|YP_004001752.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor owensensis OL]
 gi|311774465|gb|ADQ03952.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor owensensis OL]
 gi|311778382|gb|ADQ07868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor hydrothermalis 108]
          Length = 57

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA KP  
Sbjct: 1  MAYYITDDCISC--GACESECPVQCISPGDGKYVINEEECISCGACANVCPVDAPKPRD 57


>gi|322419964|ref|YP_004199187.1| nitrate reductase subunit beta [Geobacter sp. M18]
 gi|320126351|gb|ADW13911.1| nitrate reductase, beta subunit [Geobacter sp. M18]
          Length = 484

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+   +  + +  + C     C   CP   +  + +
Sbjct: 180 CNHCLNPACVASCPSRALYKRGEDGIVLVDQEVCKGWRFCTSACPYKKVYFNWD 233


>gi|225175951|ref|ZP_03729943.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168539|gb|EEG77341.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 608

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V E+C  C    C + CPVD    G+     I    C+ CG+C   C  D I   ++P
Sbjct: 537 IVAEDCKGC--GLCRKQCPVDAISGGKKEPHVIDQATCLRCGLCVNSCKFDCITVSSKP 593


>gi|315230917|ref|YP_004071353.1| 4Fe-4S cluster-binding protein [Thermococcus barophilus MP]
 gi|315183945|gb|ADT84130.1| 4Fe-4S cluster-binding protein [Thermococcus barophilus MP]
          Length = 211

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           + V   C  C+   C++VCP     + E    I + ++CI C +C   CP    K + E 
Sbjct: 62  FNVPLRCQHCEDAPCMKVCPTGAIKKSEEGFVILNTNKCIGCLMCVMACPFGHPKYEPEY 121

Query: 62  G 62
            
Sbjct: 122 K 122


>gi|190150652|ref|YP_001969177.1| hydrogenase-2 operon protein HybA precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307246252|ref|ZP_07528333.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255236|ref|ZP_07537051.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259670|ref|ZP_07541394.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307264000|ref|ZP_07545601.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915783|gb|ACE62035.1| hydrogenase-2 operon protein HybA precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306852861|gb|EFM85085.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861785|gb|EFM93764.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866315|gb|EFM98179.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306870689|gb|EFN02432.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 345

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV  CPV    + E    +   PD C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVEPNCVTACPVQALTKDEKTGIVNYDPDICTGCRYCMVACPFNVPKYDY 164


>gi|188586757|ref|YP_001918302.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351444|gb|ACB85714.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 508

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V    C  CK   C + CP +          I+ + C+ C  C   CP DA+    +
Sbjct: 1  MIRVDEVKCKGCK--VCEKTCPTNAVTIENKLAVINEN-CVGCNACVRVCPFDAMTKVAD 57

Query: 61 PGL 63
             
Sbjct: 58 ERE 60


>gi|197121285|ref|YP_002133236.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196171134|gb|ACG72107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 310

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C+   C+E CP       E   + I PD C  CG C   CP   +    + 
Sbjct: 127 SDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVVDRREDD 183


>gi|188580277|ref|YP_001923722.1| NADH dehydrogenase subunit I [Methylobacterium populi BJ001]
 gi|226737400|sp|B1ZA38|NUOI_METPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|179343775|gb|ACB79187.1| NADH-quinone oxidoreductase, chain I [Methylobacterium populi
           BJ001]
          Length = 162

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E  ++   E       +  K++ L +  + +  
Sbjct: 117 IV--EGPNFEFSVETREEL------LYDKQKLLENGDRWERE 150


>gi|134045120|ref|YP_001096606.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C5]
 gi|132662745|gb|ABO34391.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanococcus maripaludis C5]
          Length = 167

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C+EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91


>gi|219670779|ref|YP_002461214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219541039|gb|ACL22778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C +  C   CPV   Y  E+  + I  D CI C  C   CP DA
Sbjct: 62  CNHCDNAPCESACPVRATYRTEDGTILIDYDRCIGCKYCMAACPYDA 108


>gi|315618863|gb|EFU99446.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
           3431]
 gi|323940662|gb|EGB36853.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
          Length = 211

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 79  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 126


>gi|313672580|ref|YP_004050691.1| 4fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939336|gb|ADR18528.1| 4Fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
          Length = 56

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +T+ C  C    C + CPV    E +    I  D C DCG C   CPVDAI
Sbjct: 1  MAHFITDACTNC--GACEDECPVGAISEADGKRVIDADTCTDCGACAEVCPVDAI 53


>gi|308050185|ref|YP_003913751.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307632375|gb|ADN76677.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 213

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           C  C H  CV+ CP    ++  +   ++I    CI C  C   CP DA
Sbjct: 72  CNHCSHPVCVKACPTGACHKSRSTGLVSIDRGVCIGCASCARACPYDA 119


>gi|303243458|ref|ZP_07329800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
 gi|302486019|gb|EFL48941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
          Length = 151

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C+ C++  C+ +CPV+  Y  EN   ++ + CI CG+CE  CP+ AI  + +
Sbjct: 42 CMQCENAPCMNICPVNAIYLKENIPIVNKERCIGCGMCEIACPIGAIFIEEK 93


>gi|258690624|gb|ACV88074.1| NarH [Halomonas sp. N64]
          Length = 321

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 149 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 207

Query: 59  TEPGLEL 65
            + G   
Sbjct: 208 WKTGKSE 214


>gi|257470438|ref|ZP_05634529.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium ulcerans ATCC 49185]
 gi|317064646|ref|ZP_07929131.1| electron transport complex protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313690322|gb|EFS27157.1| electron transport complex protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 333

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ E C+ C  T C +VCPV     E +    I  ++CI CG+C  +C + AIK +    
Sbjct: 274 IIEEKCVGC--TLCAKVCPVGAVEGELKAKHKIDQEKCIGCGLCFDKCKLKAIKMNVIER 331

Query: 63  LE 64
            +
Sbjct: 332 RD 333



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C    C + CPVD      N   I P++CI CG+C  +CP +AIK + +   +  +
Sbjct: 217 ACIGC--GLCKKACPVDAITVENNLAKIDPEKCIQCGLCAAKCPTNAIKSEIKEIKKAEI 274



 Score = 38.4 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 14  HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
           H DC  VCPV+     +  +  +  D+CI CG+C+  CP   I  
Sbjct: 146 HGDCERVCPVNAIKVNDKGIAEVDEDKCISCGLCQKACPKKVISM 190


>gi|298530556|ref|ZP_07017958.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509930|gb|EFI33834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 247

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C +  CV  CP    Y+ E    + I+ D CI CG C   CP  A    
Sbjct: 61  CMHCDNPTCVHACPSGATYKEEETGIVQINKDMCIGCGNCVVACPYSARYRH 112


>gi|149176045|ref|ZP_01854662.1| ferredoxin [Planctomyces maris DSM 8797]
 gi|148845199|gb|EDL59545.1| ferredoxin [Planctomyces maris DSM 8797]
          Length = 59

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESL 87
           L I P+ECIDC  C  ECPV+AI  +         +++IN+E A + P IT +K  L
Sbjct: 1  MLYIDPEECIDCDACRTECPVNAIFYEDDVPDQWREYIQINAEMAAKTPPITERKAPL 58


>gi|157963951|ref|YP_001503985.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848951|gb|ABV89450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 559

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  T C+  CP D        + I P  C   G C   CP  AI  D     
Sbjct: 195 GC--TRCLNFCPADAISSVAKKIEIDPYLCHGAGSCTNACPTGAISYDLPTPQ 245



 Score = 41.5 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V TENC LC    CV  CP     +G +  A+H  E  C+ CG+CE  CP   I
Sbjct: 424 VNTENCTLC--MSCVATCPTMALTDGGDRPALHFVEQDCVQCGLCETACPEKVI 475


>gi|89896832|ref|YP_520319.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89336280|dbj|BAE85875.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 192

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++  C  CK   CVE CP    ++ EN +      +CI C  C   CP    +   E 
Sbjct: 52  YYLSITCNHCKEPKCVEGCPTQAMHKLENGIVAHDKSKCIGCRYCTWSCPYGVPQFIEET 111

Query: 62  GL 63
           G 
Sbjct: 112 GQ 113


>gi|32034180|ref|ZP_00134402.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208796|ref|YP_001054021.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae L20]
 gi|165976757|ref|YP_001652350.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|303250582|ref|ZP_07336779.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303253088|ref|ZP_07339238.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307248365|ref|ZP_07530388.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252972|ref|ZP_07534860.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307257398|ref|ZP_07539168.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261818|ref|ZP_07543483.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|126097588|gb|ABN74416.1| hydrogenase-2 operon protein HybA precursor [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876858|gb|ABY69906.1| hydrogenase-2 operon protein hybA precursor [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302648073|gb|EFL78279.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302650570|gb|EFL80729.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306855103|gb|EFM87283.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306859610|gb|EFM91635.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306864248|gb|EFM96161.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306868482|gb|EFN00294.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 345

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV  CPV    + E    +   PD C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVEPNCVTACPVQALTKDEKTGIVNYDPDICTGCRYCMVACPFNVPKYDY 164


>gi|325129008|gb|EGC51858.1| iron-sulfur cluster-binding protein [Neisseria meningitidis N1568]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|298369582|ref|ZP_06980899.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298282139|gb|EFI23627.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 284

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I  
Sbjct: 73  AWIDETACIGC--TACIRACPVDAIMGARKLMHTVIADECTGCGLCVAPCPVDCIHM 127



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           M  V+ + C  C    CV  CPVDC +      
Sbjct: 102 MHTVIADECTGC--GLCVAPCPVDCIHMQPVKA 132



 Score = 34.2 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 14/38 (36%)

Query: 19 EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C      +      I    CI C  C   CPVDAI 
Sbjct: 59 KACIAPAKIQHHALAWIDETACIGCTACIRACPVDAIM 96


>gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus obeum A2-162]
          Length = 623

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E CI C    C + CP      + ++   I  + CI CG C+  C  DAI  +
Sbjct: 568 HINPEFCIGC--GKCAKNCPAAAISGKIKHPYHIDNELCIKCGTCKDNCNFDAIYVE 622


>gi|281357693|ref|ZP_06244180.1| nitroreductase [Victivallis vadensis ATCC BAA-548]
 gi|281315950|gb|EFA99976.1| nitroreductase [Victivallis vadensis ATCC BAA-548]
          Length = 269

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +E CI C    C++ CP      GE    +  D+CI+CG C   CP +AI     P 
Sbjct: 10 SEACIRC--GFCIDDCPTCVLEMGEAGPQVREDQCIECGHCVSVCPTEAIDNIRTPR 64


>gi|260597696|ref|YP_003210267.1| formate dehydrogenase-H ferredoxin subunit [Cronobacter turicensis
           z3032]
 gi|260216873|emb|CBA30415.1| Electron transport protein hydN [Cronobacter turicensis z3032]
          Length = 197

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A+
Sbjct: 74  CRQCEDAPCASVCPNGAISRDGDFVHVHQQRCIGCKTCVVACPYGAM 120


>gi|291286072|ref|YP_003502888.1| Electron transfer flavoprotein alpha subunit [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290883232|gb|ADD66932.1| Electron transfer flavoprotein alpha subunit [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 440

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C    C   CPVD     +N    I+ ++CI C  C   CP DAI        +
Sbjct: 15 PDTCIAC-GARCESACPVDAVTMDDNESPIINEEKCIGCVKCVKVCPADAIFMYFTEEEQ 73

Query: 65 L 65
           
Sbjct: 74 K 74



 Score = 34.6 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYE 28
          +  E CI C    CV+VCP D  + 
Sbjct: 44 INEEKCIGCVK--CVKVCPADAIFM 66


>gi|157377344|ref|YP_001475944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319718|gb|ABV38816.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 181

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A+    + 
Sbjct: 60  SCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCATACPYSAVSIREDD 114


>gi|148378067|ref|YP_001252608.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 3502]
 gi|153934228|ref|YP_001382466.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 19397]
 gi|153936953|ref|YP_001386018.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. Hall]
 gi|153941409|ref|YP_001389424.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. Langeland]
 gi|168181164|ref|ZP_02615828.1| ferredoxin, 4Fe-4S [Clostridium botulinum NCTC 2916]
 gi|168185099|ref|ZP_02619763.1| ferredoxin, 4Fe-4S [Clostridium botulinum Bf]
 gi|170755610|ref|YP_001779687.1| ferredoxin, 4Fe-4S [Clostridium botulinum B1 str. Okra]
 gi|170758331|ref|YP_001785390.1| ferredoxin, 4Fe-4S [Clostridium botulinum A3 str. Loch Maree]
 gi|187777348|ref|ZP_02993821.1| hypothetical protein CLOSPO_00900 [Clostridium sporogenes ATCC
          15579]
 gi|226947285|ref|YP_002802376.1| ferredoxin, 4Fe-4S [Clostridium botulinum A2 str. Kyoto]
 gi|237793373|ref|YP_002860925.1| ferredoxin, 4Fe-4S [Clostridium botulinum Ba4 str. 657]
 gi|148287551|emb|CAL81615.1| ferredoxin [Clostridium botulinum A str. ATCC 3502]
 gi|152930272|gb|ABS35772.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 19397]
 gi|152932867|gb|ABS38366.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. Hall]
 gi|152937305|gb|ABS42803.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. Langeland]
 gi|169120822|gb|ACA44658.1| ferredoxin, 4Fe-4S [Clostridium botulinum B1 str. Okra]
 gi|169405320|gb|ACA53731.1| ferredoxin, 4Fe-4S [Clostridium botulinum A3 str. Loch Maree]
 gi|182667994|gb|EDT79973.1| ferredoxin, 4Fe-4S [Clostridium botulinum NCTC 2916]
 gi|182671843|gb|EDT83804.1| ferredoxin, 4Fe-4S [Clostridium botulinum Bf]
 gi|187774276|gb|EDU38078.1| hypothetical protein CLOSPO_00900 [Clostridium sporogenes ATCC
          15579]
 gi|226844082|gb|ACO86748.1| ferredoxin, 4Fe-4S [Clostridium botulinum A2 str. Kyoto]
 gi|229261182|gb|ACQ52215.1| ferredoxin, 4Fe-4S [Clostridium botulinum Ba4 str. 657]
 gi|295317534|gb|ADF97911.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. 230613]
 gi|322804331|emb|CBZ01881.1| ferredoxin [Clostridium botulinum H04402 065]
          Length = 56

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A   D
Sbjct: 1  MAYKITDACVSC--GACAAECPVNAISQGDSIFDIDADTCIDCGNCANVCPVGAPVQD 56


>gi|38489083|gb|AAR21230.1| indolepyruvate oxidoreductase II alpha subunit [Methanococcus
           voltae PS]
          Length = 599

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V +E C  CK   C+ + CP   F        I+   C+ CG+C   C   AI+   +
Sbjct: 542 VNSEKCNGCKL--CLRIGCPAISFNNETKKAEINKSLCVGCGLCVDVCKRSAIELMEK 597


>gi|315922949|ref|ZP_07919189.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. D2]
 gi|313696824|gb|EFS33659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. D2]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 17/100 (17%)

Query: 1  MTYV---VTEN-CILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECP 51
          M++V    T+  C  C    C++VC  +       Y+G  ++ I   +C+ CG+CE  CP
Sbjct: 1  MSFVPRLATDKQCTGCF--ACIDVCNKNAINIVEHYDGHRYVEIDKSKCVGCGMCEQICP 58

Query: 52 VDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
             I  + E     +      YA    N T +K S    A
Sbjct: 59 ---IVSNFEYQKSEYSDF---YAAWAKNRTHRKTSASGGA 92


>gi|225637772|gb|ACN97372.1| NarH [Halomonas shengliensis]
          Length = 316

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 144 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 202

Query: 59  TEPGLEL 65
            + G   
Sbjct: 203 WKTGKSE 209


>gi|255656166|ref|ZP_05401575.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-23m63]
 gi|296450400|ref|ZP_06892156.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP08]
 gi|296879477|ref|ZP_06903471.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP07]
 gi|296260661|gb|EFH07500.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP08]
 gi|296429623|gb|EFH15476.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP07]
          Length = 151

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C++VCP +CF + E F+ +    CI C +CE  C   A+    +     
Sbjct: 65  ACIHCDEPKCLDVCPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGALIYGMDGKANK 122


>gi|225572919|ref|ZP_03781674.1| hypothetical protein RUMHYD_01110 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039732|gb|EEG49978.1| hypothetical protein RUMHYD_01110 [Blautia hydrogenotrophica DSM
           10507]
          Length = 599

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +  E CI CK   C++  CP   +      + I+  +C+ C VC   C  DAI  + 
Sbjct: 545 IDPEKCIGCK--ACLKTGCPALNYDRVNKKVHINRAQCVGCDVCMQVCRKDAISKED 599


>gi|213051548|ref|ZP_03344426.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425190|ref|ZP_03357940.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|223935887|ref|ZP_03627802.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [bacterium Ellin514]
 gi|223895488|gb|EEF61934.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [bacterium Ellin514]
          Length = 1145

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           VV +   C  C+   C  VCPV+     +  L  +  + C+    C   CP  
Sbjct: 888 VVNQPMLCQHCEAAPCENVCPVNATVHDQEGLNVMVYNRCVGTRYCSNNCPYK 940


>gi|204929696|ref|ZP_03220770.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321415|gb|EDZ06615.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C   CP        + + ++  +CI C  C   CP   ++ 
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQM 104


>gi|167549507|ref|ZP_02343266.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205325402|gb|EDZ13241.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 653

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|167625917|ref|YP_001676211.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355939|gb|ABZ78552.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 181

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A+    + 
Sbjct: 60  SCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYSAVSIREDD 114


>gi|157373383|ref|YP_001471983.1| twin-arginine translocation pathway signal [Shewanella sediminis
           HAW-EB3]
 gi|157315757|gb|ABV34855.1| twin-arginine translocation pathway signal [Shewanella sediminis
           HAW-EB3]
          Length = 225

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+ T CV+VCP    Y+      +++   +C+ C  C   CP  
Sbjct: 93  SCQQCEDTPCVKVCPTGAAYKDPETGIVSVDSWKCVGCQYCIAACPYQ 140


>gi|56798124|dbj|BAD82907.1| membrane-bound nitrate reductase beta-subunit [Pseudomonas sp.
           MT-1]
          Length = 512

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+   +  + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|307354476|ref|YP_003895527.1| cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
 gi|307157709|gb|ADN37089.1| Cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
          Length = 289

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + TE C+ C    C+E C        E+  ++ P  C  CGVC+  CP  AI        
Sbjct: 64  IDTEKCVQC--GACLENCRFGAVEIKEDQYSVRPLLCEGCGVCDYVCPSGAISMKKRLSG 121

Query: 64  ELW 66
           E++
Sbjct: 122 EIF 124


>gi|269216154|ref|ZP_06160008.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269130413|gb|EEZ61491.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 220

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y V+  C  C +  C+E CP     +  +   + ++ D C   G C   CP        
Sbjct: 60  AYHVSAACNHCANPACMEACPAGAIEKDSDTRLVFVNQDACKGFGACVDACPYGVPILSK 119

Query: 60  EPG 62
           E  
Sbjct: 120 EDN 122


>gi|225637776|gb|ACN97374.1| NarH [Halomonas ventosae]
 gi|258690610|gb|ACV88067.1| NarH [Halomonas sp. 4CR]
 gi|258690618|gb|ACV88071.1| NarH [Halomonas sp. F15]
          Length = 322

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 150 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 208

Query: 59  TEPGLEL 65
            + G   
Sbjct: 209 WKTGKSE 215


>gi|225637756|gb|ACN97366.1| NarH [Halomonas nitroreducens]
          Length = 321

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 149 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 207

Query: 59  TEPGLEL 65
            + G   
Sbjct: 208 WKTGKSE 214


>gi|255654255|ref|ZP_05399664.1| ferredoxin [Clostridium difficile QCD-23m63]
          Length = 56

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYKITDACISC--GACEAECPVSCISAGDDAYVIDASSCIDCGSCAGACPVDAPQPE 56


>gi|260833833|ref|XP_002611916.1| hypothetical protein BRAFLDRAFT_287714 [Branchiostoma floridae]
 gi|229297289|gb|EEN67925.1| hypothetical protein BRAFLDRAFT_287714 [Branchiostoma floridae]
          Length = 218

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 116 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 173

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 174 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWESE 206


>gi|188584735|ref|YP_001916280.1| Fe-S cluster domain protein [Natranaerobius thermophilus
          JW/NM-WN-LF]
 gi|179349422|gb|ACB83692.1| Fe-S cluster domain protein [Natranaerobius thermophilus
          JW/NM-WN-LF]
          Length = 460

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E+CI C H  C++ CP            I  + CIDCG C   CP +A   +++   +
Sbjct: 12 EESCIGCVH--CLKFCPTQAIRIKGGRAEILKERCIDCGGCIQICPNNAKIAESDNISQ 68


>gi|160939954|ref|ZP_02087300.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437098|gb|EDP14864.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC
           BAA-613]
          Length = 427

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C+ C    C + CPV          G     +  D C+ CGVC+  C V AI  +
Sbjct: 293 DQCVGC--GKCAKTCPVLAISMEEGENGRKRAVVDKDICLGCGVCDRNCGVKAIHME 347


>gi|218767102|ref|YP_002341614.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|121051110|emb|CAM07381.1| putative ferredoxin [Neisseria meningitidis Z2491]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|325203327|gb|ADY98780.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240355]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|319411308|emb|CBY91719.1| putative ferredoxin [Neisseria meningitidis WUE 2594]
 gi|325130942|gb|EGC53669.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           OX99.30304]
 gi|325135016|gb|EGC57644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M13399]
 gi|325137038|gb|EGC59634.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M0579]
 gi|325202960|gb|ADY98414.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240149]
 gi|325207242|gb|ADZ02694.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           NZ-05/33]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|310778774|ref|YP_003967107.1| nitroreductase [Ilyobacter polytropus DSM 2926]
 gi|309748097|gb|ADO82759.1| nitroreductase [Ilyobacter polytropus DSM 2926]
          Length = 273

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V  E CI C    CV+ C        +    I+   C  CG C   CP DA+  D  
Sbjct: 1  MMIVNEEKCIGC--GLCVKDCFPKDIELIDKKAKINNVTCFKCGHCIAVCPTDAVTTDEF 58

Query: 61 PGLELWLKINSEYATQWPN 79
             E+ ++ + E     PN
Sbjct: 59 DMSEV-IEYDKEKFQVDPN 76


>gi|308388428|gb|ADO30748.1| putative ferredoxin [Neisseria meningitidis alpha710]
          Length = 279

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I  
Sbjct: 74  IDETACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHM 126



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC +   
Sbjct: 101 MHTVIADECTGC--GLCVAPCPVDCIHMQP 128


>gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 597

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           Y+    C  C    C + CP       +     I   +CI CG C+ +C  ++I 
Sbjct: 543 YIDARACKGC--GLCSKNCPAGAISGEKKKPHVIDAGKCIKCGTCKDKCKFNSIF 595



 Score = 33.8 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CP     +      I    C  CG+C   CP  AI  +
Sbjct: 529 KRCPAGAC-QALVTYYIDARACKGCGLCSKNCPAGAISGE 567


>gi|223038486|ref|ZP_03608780.1| ubiquinol CytoChrome c oxidoreductase, cytochrome b subunit
           [Campylobacter rectus RM3267]
 gi|222880343|gb|EEF15430.1| ubiquinol CytoChrome c oxidoreductase, cytochrome b subunit
           [Campylobacter rectus RM3267]
          Length = 193

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            +T +C  C    C++VCPV  + + EN +     D+CI CG C   CP  +I    +  
Sbjct: 64  FITHSCHHCDEPACMDVCPVGAYIKLENGIVQPLHDKCIGCGYCIVACPYGSITKGKDGK 123

Query: 63  LEL 65
            + 
Sbjct: 124 AQK 126


>gi|218709918|ref|YP_002417539.1| hypothetical protein VS_1931 [Vibrio splendidus LGP32]
 gi|218322937|emb|CAV19114.1| Protein nrfC homolog precursor [Vibrio splendidus LGP32]
          Length = 228

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP        E
Sbjct: 98  SCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACPYQVRFFHPE 152


>gi|114051372|ref|NP_001040316.1| NADH dehydrogenase ubiquinone Fe-S 8 [Bombyx mori]
 gi|87248369|gb|ABD36237.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Bombyx mori]
          Length = 221

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 119 EERCIACKL--CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 176

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   + + E       +  K++ L +  K +  
Sbjct: 177 V--EGPNFEFTTETHEEL------LYNKEKLLSNGDKWESE 209


>gi|89893081|ref|YP_516568.1| nitrate reductase beta chain [Desulfitobacterium hafniense Y51]
 gi|89332529|dbj|BAE82124.1| nitrate reductase beta chain [Desulfitobacterium hafniense Y51]
          Length = 483

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  ++C     C   CP   +  + +     
Sbjct: 185 CEHCLNPGCVASCPSGAIYKRDEDGIVLVDQEKCRGWRYCTSGCPYKKVYYNWKTYKAE 243


>gi|319760120|ref|YP_004124059.1| DMSO reductase family type II enzyme, iron-sulfur subunit
           [Alicycliphilus denitrificans BC]
 gi|38604702|sp|P60069|CLRB_IDEDE RecName: Full=Chlorate reductase subunit beta; AltName:
           Full=Chlorate reductase iron-sulfur subunit
 gi|34494350|emb|CAD97448.1| chlorate reductase iron-sulphur cluster binding subunit [Ideonella
           dechloratans]
 gi|317119726|gb|ADV02214.1| DMSO reductase family type II enzyme, iron-sulfur subunit
           [Alicycliphilus denitrificans BC]
          Length = 328

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +    C     C   CP   +  
Sbjct: 134 CNHCSNPACLAACPTKAIYKRPEDGIVVVDQTRCRGYRYCVKACPYGKMYF 184


>gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 627

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  E C  C  T C  VCP      E +    I+ + C+ CG C  +C   AI
Sbjct: 573 YIDPEKCKGC--TLCSRVCPAGAITGEKKQPHEINVELCLKCGTCAEKCKFGAI 624



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWP 78
           + CP       +    I P++C  C +C   CP  AI  + +       +IN E   +  
Sbjct: 559 KKCPAGACQALKE-YYIDPEKCKGCTLCSRVCPAGAITGEKKQPH----EINVELCLKCG 613

Query: 79  NITTK 83
               K
Sbjct: 614 TCAEK 618


>gi|315931016|gb|EFV09991.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
          subsp. jejuni 327]
          Length = 200

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
          +C+ C    C  VCPVDCFY   + +     + CI CG C   CP  A
Sbjct: 52 SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 99


>gi|213854524|ref|ZP_03382764.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 327

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 107 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 163


>gi|156934229|ref|YP_001438145.1| electron transport protein HydN [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532483|gb|ABU77309.1| hypothetical protein ESA_02059 [Cronobacter sakazakii ATCC BAA-894]
          Length = 182

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A+
Sbjct: 59  CRQCEDAPCASVCPNGAITRDNDFVHVHQQRCIGCKTCVVACPYGAM 105


>gi|119720692|ref|YP_921187.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525812|gb|ABL79184.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 273

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + TE CI CK   C+ VCP     E       +   ECI C  C   C  DA+
Sbjct: 213 IDTEKCINCK--ACMRVCPTGAITEDSFKTGEVSRTECIMCLRCYDVCMYDAL 263



 Score = 37.3 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 13  KHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           K   C   CPV        +     + I  ++CI+C  C   CP  AI  D+
Sbjct: 186 KRAWCRYFCPVGAVLGAVGFRKVFGVKIDTEKCINCKACMRVCPTGAITEDS 237


>gi|67474180|ref|XP_652839.1| Fe-hydrogenase [Entamoeba histolytica HM-1:IMSS]
 gi|27652439|gb|AAO17820.1| putative long iron-dependent hydrogenase 2 [Entamoeba histolytica]
 gi|56469743|gb|EAL47464.1| Fe-hydrogenase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 504

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C  C    C   CP  C   GE+    I+ + CI CG C   CP  AI
Sbjct: 113 YFVTQACEGCTSRPCSVNCPKKCISFGEDGRAVINQNNCIKCGRCYKFCPYGAI 166



 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 15/63 (23%)

Query: 8   NCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV 52
           NCI C                  CV+ CP     +    +  I  ++CI+CG C   CP 
Sbjct: 150 NCIKCGRCYKFCPYGAIISKSVPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCMRACPF 209

Query: 53  DAI 55
            AI
Sbjct: 210 GAI 212


>gi|296133322|ref|YP_003640569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031900|gb|ADG82668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 272

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C +VCP +  F+  E  + +  ++CI CG C   CP    K + +    
Sbjct: 74  CMHCTEAACEKVCPENAIFHTAEGAVVVDREKCIGCGYCAQYCPFGIPKINEKEKKM 130


>gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 626

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 1   MT---YVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           M    +V+  E CI C    C  VCPV      +     I    C+ CG C   C   A+
Sbjct: 566 MALRRFVILAEKCIGC--GACAYVCPVKAIKGEKKKPHHIDEKVCVKCGRCFEICRFQAV 623



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VTE    C   +C+ +              I  ++CI CG C   CPV AIK + +    
Sbjct: 555 VTE--RRCSAGECMAL----------RRFVILAEKCIGCGACAYVCPVKAIKGEKKKPHH 602


>gi|89895807|ref|YP_519294.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219670238|ref|YP_002460673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89335255|dbj|BAE84850.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219540498|gb|ACL22237.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 207

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           NC  C +  CV+ CPV   Y+  E+ + I   D+CI C  C   CP   ++ 
Sbjct: 64  NCQHCANPACVKACPVGATYQREEDGVVIQDYDQCIGCRYCMVACPYSGVRQ 115


>gi|325262526|ref|ZP_08129263.1| ferredoxin 2 [Clostridium sp. D5]
 gi|324032358|gb|EGB93636.1| ferredoxin 2 [Clostridium sp. D5]
          Length = 467

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C  C +  C++ CP            I    CIDCG C   CP  A
Sbjct: 12 EDLCQGCIN--CIKYCPTQAIRVHNGKAHIIDKFCIDCGRCIRYCPHHA 58


>gi|242013397|ref|XP_002427394.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212511768|gb|EEB14656.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 204

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 102 EERCIACKL--CEAICPAQAITIEAEERSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 159

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMD 94
                         N EY+T      +  K++ L +  K +
Sbjct: 160 VEGP----------NFEYSTFTHEELLYNKEKLLDNGDKWE 190


>gi|170765779|ref|ZP_02900590.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
 gi|170124925|gb|EDS93856.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
          Length = 247

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M+Y+   +C  CK   C+  CP D     +   +I   +C  CG CE  CP  AI P
Sbjct: 1  MSYIDQTSCTGCK--VCLLFCPDDAIEYYDGKCSIDSKQCTLCGCCEGCCPFSAIHP 55


>gi|150402671|ref|YP_001329965.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033701|gb|ABR65814.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 167

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C+EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91



 Score = 33.4 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  E+CI C    C   CP    Y  G+           D   C   C    +
Sbjct: 69  YLDKESCIGC--GLCAMACPFGAIYISGKTAHKCDLCYGRDEQACVKACSKRCL 120


>gi|187924671|ref|YP_001896313.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           phytofirmans PsJN]
 gi|187715865|gb|ACD17089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           phytofirmans PsJN]
          Length = 413

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E CI C    C E CPVD     +N   +  + C  C  C P CP  AI        
Sbjct: 15  IDPEICIRCN--TCEETCPVDAITHDDNNYVVKAEICNGCMACVPPCPTGAIDNWRTVLK 72

Query: 64  ELWLKINSEYATQWPNITTKKE-SLPSAAKMDG 95
                I  ++   W  +  +   ++P+A ++ G
Sbjct: 73  ADAYPIEEQF--TWDVLPEQNTMAVPAADELPG 103


>gi|119720719|ref|YP_921214.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525839|gb|ABL79211.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 131

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C  VCP +         + ++P +C+ CG C   CP+ A++ D E
Sbjct: 53  CRACENPPCAAVCPTNALVRREGGGVVLNPSKCVGCGNCARACPIGAVQWDYE 105


>gi|150017686|ref|YP_001309940.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904151|gb|ABR34984.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 260

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++VT+NC  CK   C +VCP +              +C  C  C   CP +AI   +E  
Sbjct: 183 FIVTDNCTSCK--VCEKVCPANNIKVNNKPEF--SHKCEVCLACIHHCPQNAIHLKSEKS 238

Query: 63  LELWLKINSEY 73
              ++  N + 
Sbjct: 239 KARFINQNVQL 249


>gi|291286605|ref|YP_003503421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883765|gb|ADD67465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 248

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C  C +  CVE CP+   Y+ E    + ++ + CI CG C+  CP DA +      
Sbjct: 104 ISLACNHCTNPACVEACPMGIIYKEEEYGLVLVNNETCISCGKCKEACPWDAPQFYAPDF 163

Query: 63  LE 64
            +
Sbjct: 164 SQ 165


>gi|254517435|ref|ZP_05129491.1| ferredoxin [Clostridium sp. 7_2_43FAA]
 gi|226911184|gb|EEH96385.1| ferredoxin [Clostridium sp. 7_2_43FAA]
          Length = 56

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M + + ++C+ C    C   CPV+   +G+    I  D CIDCG C   CPV A
Sbjct: 1  MAFKIEDSCVNC--GACAAECPVNAISQGDTQFVIDEDTCIDCGNCANVCPVGA 52


>gi|134094868|ref|YP_001099943.1| nitrate reductase 1, Fe-S (beta) subunit [Herminiimonas
           arsenicoxydans]
 gi|133738771|emb|CAL61818.1| Nitrate reductase, beta subunit [Herminiimonas arsenicoxydans]
          Length = 518

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|115523011|ref|YP_779922.1| thiamine pyrophosphate binding domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gi|115516958|gb|ABJ04942.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Rhodopseudomonas palustris BisA53]
          Length = 605

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VTE C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D I
Sbjct: 543 IVTEQCTAC--QSCMNLGCPALTWSDQWFEGRHRVQIDPALCIGCTLCAQVCTIDCI 597


>gi|320353396|ref|YP_004194735.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320121898|gb|ADW17444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 253

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 18/102 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C +  CV  CPV                  + I+ ++CI CG C P CP DA   D
Sbjct: 80  PCMQCDNPPCVAACPVKGKDGATWKSTEGLSAGLVMINYEQCIGCGACVPACPYDARTMD 139

Query: 59  --------TEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
                   T    +     + EY  +WP  + K   + +A K
Sbjct: 140 QGGMHGDGTPAIQKYETMASYEYGKKWPR-SGKNTPVGNARK 180


>gi|300815520|ref|ZP_07095744.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300821581|ref|ZP_07101727.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300905875|ref|ZP_07123608.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300916895|ref|ZP_07133598.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300923654|ref|ZP_07139682.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300931882|ref|ZP_07147179.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300935656|ref|ZP_07150629.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300950798|ref|ZP_07164684.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300958379|ref|ZP_07170520.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301304180|ref|ZP_07210296.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301643637|ref|ZP_07243678.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|309793561|ref|ZP_07687987.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|300314963|gb|EFJ64747.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300402344|gb|EFJ85882.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300415865|gb|EFJ99175.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300420095|gb|EFK03406.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300449893|gb|EFK13513.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300459156|gb|EFK22649.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300460305|gb|EFK23798.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300525719|gb|EFK46788.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300531449|gb|EFK52511.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300840593|gb|EFK68353.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301078021|gb|EFK92827.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|308122518|gb|EFO59780.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|315256897|gb|EFU36865.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|324018159|gb|EGB87378.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
          Length = 289

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 125


>gi|300897096|ref|ZP_07115558.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300973429|ref|ZP_07172185.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|300993136|ref|ZP_07180222.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|301017308|ref|ZP_07182072.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|301048188|ref|ZP_07195224.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|301325658|ref|ZP_07219119.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|300299946|gb|EFJ56331.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300305151|gb|EFJ59671.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300359104|gb|EFJ74974.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300400281|gb|EFJ83819.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300410771|gb|EFJ94309.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|300847513|gb|EFK75273.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|315288770|gb|EFU48168.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|315291277|gb|EFU50637.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|315297627|gb|EFU56904.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
          Length = 289

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 125


>gi|257437763|ref|ZP_05613518.1| iron-sulfur cluster-binding protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257199778|gb|EEU98062.1| iron-sulfur cluster-binding protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 268

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E C  C    C + C  D   Y   N   I  ++C  CG C   C  DAI       
Sbjct: 86  VQEELCRGC--HRCAKECGSDAIRYNENNKAVIDYEKCKGCGRCIGACNFDAIYSIDSSA 143

Query: 63  LELWLKINSEYAT 75
            E   +  +EYA 
Sbjct: 144 NEELDRKMAEYAA 156


>gi|225637754|gb|ACN97365.1| NarH [Halomonas fontilapidosi]
          Length = 322

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 150 MMYL-PRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYN 208

Query: 59  TEPGLEL 65
            + G   
Sbjct: 209 WKTGKSE 215


>gi|217968097|ref|YP_002353603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dictyoglomus
           turgidum DSM 6724]
 gi|217337196|gb|ACK42989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dictyoglomus
           turgidum DSM 6724]
          Length = 369

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C+   CV+ CP       +    +  P+ CI CG C   CP  AIK          +
Sbjct: 195 CIGCR--RCVDHCPTGALEMVDKKSKLTRPELCIGCGECAVVCPTSAIKILWNESA---I 249

Query: 68  KINSEYATQWPNITTKKES 86
            +  +       I  +KE 
Sbjct: 250 GLQEKMVEFTYGILKQKEP 268


>gi|146303352|ref|YP_001190668.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701602|gb|ABP94744.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 641

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ C+   C E CPV       NF+         CI  G C   CP + I      
Sbjct: 574 DPDLCVKCETKACAEACPVGNTDLPGNFIRSGQFKSMRCIGVGDCAEACPYNNISFYDIR 633

Query: 62  GLEL 65
               
Sbjct: 634 SWLK 637


>gi|78042778|ref|YP_361366.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994893|gb|ABB13792.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 179

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C+EVCP    Y+ E+ +  +    C  C  C   CP  A   + E
Sbjct: 58  CQHCDNAPCIEVCPTGATYKREDGIVLVDDKRCAGCKYCMVACPYQARVINHE 110


>gi|66524760|ref|XP_623480.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial isoform 2 [Apis mellifera]
          Length = 201

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 99  EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 156

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 157 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWESE 189


>gi|326383750|ref|ZP_08205435.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326197514|gb|EGD54703.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 506

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYA 74
          C+   P +  +   + L I P+ CIDCG C   CPVDAI P        +++++IN+ Y 
Sbjct: 3  CIHPTPEERGFGTSDILHIDPEACIDCGACADACPVDAIFPADRLSARDQIFVEINAGYY 62

Query: 75 TQWPNIT 81
             P+I+
Sbjct: 63 RDHPDIS 69


>gi|194292766|ref|YP_002008673.1| nitrate reductase 1, fe-s (beta) subunit [Cupriavidus taiwanensis
           LMG 19424]
 gi|193226670|emb|CAQ72621.1| nitrate reductase 1, Fe-S (beta) subunit [Cupriavidus taiwanensis
           LMG 19424]
          Length = 516

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
 gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
          Length = 600

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +    C  C  T C + CP             I   +CI CGVC   C   AI
Sbjct: 547 IDPAKCKGC--TLCAKNCPAGAISGAVRAPHVIDQSKCIKCGVCMDNCRFSAI 597


>gi|89276311|gb|ABD66512.1| mitochondrial NADH:ubiquinone oxidoreductase complex I [Gymnadenia
           conopsea]
          Length = 226

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 124 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   + + E       +  K++ L +  + +  
Sbjct: 182 V--EGPNFEFTTETHEEL------LYDKEKLLENGDRWETE 214


>gi|126697745|ref|YP_001086642.1| ferredoxin [Clostridium difficile 630]
 gi|254973833|ref|ZP_05270305.1| ferredoxin [Clostridium difficile QCD-66c26]
 gi|255091219|ref|ZP_05320697.1| ferredoxin [Clostridium difficile CIP 107932]
 gi|255099336|ref|ZP_05328313.1| ferredoxin [Clostridium difficile QCD-63q42]
 gi|255305170|ref|ZP_05349342.1| ferredoxin [Clostridium difficile ATCC 43255]
 gi|255312877|ref|ZP_05354460.1| ferredoxin [Clostridium difficile QCD-76w55]
 gi|255515636|ref|ZP_05383312.1| ferredoxin [Clostridium difficile QCD-97b34]
 gi|255648730|ref|ZP_05395632.1| ferredoxin [Clostridium difficile QCD-37x79]
 gi|260681952|ref|YP_003213237.1| ferredoxin [Clostridium difficile CD196]
 gi|260685550|ref|YP_003216683.1| ferredoxin [Clostridium difficile R20291]
 gi|306518850|ref|ZP_07405197.1| ferredoxin [Clostridium difficile QCD-32g58]
 gi|115249182|emb|CAJ66994.1| Ferredoxin (4Fe-4S cluster-containing protein) (fdx-like)
          [Clostridium difficile]
 gi|260208115|emb|CBA60382.1| ferredoxin [Clostridium difficile CD196]
 gi|260211566|emb|CBE01761.1| ferredoxin [Clostridium difficile R20291]
          Length = 56

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYKITDACISC--GACEAECPVSCISAGDDAYVIDAGSCIDCGSCAGACPVDAPQPE 56


>gi|326201720|ref|ZP_08191591.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988320|gb|EGD49145.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y + +NC  CK       CP   F +G   + I P  C  CG+C   CP +AI  +   
Sbjct: 541 YTIKDNCKNCKKCITDIGCPAISFIDG--KVNIEPSLCYGCGLCTNVCPFNAIGGEENE 597


>gi|147920357|ref|YP_685870.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110621266|emb|CAJ36544.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 130

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    CV VCPVD   YE +  + I    C+ CG C   CP  AI
Sbjct: 79  CVHC--GACVSVCPVDAISYEHDWQVTIDKAACVQCGTCTHACPTSAI 124


>gi|99080595|ref|YP_612749.1| NADH dehydrogenase subunit I [Ruegeria sp. TM1040]
 gi|115502544|sp|Q1GIM9|NUOI_SILST RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|99036875|gb|ABF63487.1| NADH-quinone oxidoreductase chain I [Ruegeria sp. TM1040]
          Length = 164

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKDKLLANGERWEAE 152


>gi|288932883|ref|YP_003436943.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288895131|gb|ADC66668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 196

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y     C  C    C+E CP       EN + +  D CI+CG+C   CP   I+   +
Sbjct: 55  SYAFPSKCRHCDPAPCLEACPTSAINREENIVFVEVDRCINCGMCAMVCPFGVIRFYRD 113


>gi|269217312|ref|ZP_06161166.1| iron-sulfur cluster-binding protein [Slackia exigua ATCC 700122]
 gi|269129449|gb|EEZ60534.1| iron-sulfur cluster-binding protein [Slackia exigua ATCC 700122]
          Length = 259

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           E+C  CK   C+  CPV   Y         +  D CI CG+C   CP +  + D
Sbjct: 155 EHCKQCKEAACMRNCPVHAIYADPKTGARVVDTDACIGCGLCHEACPWNMPQID 208



 Score = 40.7 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCGVCEPECPVDAIKP- 57
           V T+ CI C    C E CP        N   I P      +CI CG C  +CP  AIK  
Sbjct: 185 VDTDACIGC--GLCHEACP-------WNMPQIDPASGKSTKCIACGRCAVQCPNGAIKFV 235

Query: 58  DTEPGLELWLK 68
           D +   +  + 
Sbjct: 236 DWQDIAQEAID 246


>gi|251792885|ref|YP_003007611.1| electron transport protein HydN [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534278|gb|ACS97524.1| electron transport protein HydN [Aggregatibacter aphrophilus
           NJ8700]
          Length = 199

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C  + C  VCPV       + + ++   CI C +C   CP  AI   
Sbjct: 51  CRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAITQH 100


>gi|258405327|ref|YP_003198069.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797554|gb|ACV68491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 345

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + C  C    CV+ C  D      + + I   EC+ C +C   CP  AI+ +    L
Sbjct: 186 IDEDACQAC--GACVDACWFDLPRIENDCVVIDSPECMRCPICSTTCPEGAIRLENREKL 243

Query: 64  ELWLKINSE 72
              L + ++
Sbjct: 244 AQGLAVAAK 252


>gi|163850509|ref|YP_001638552.1| NADH dehydrogenase subunit I [Methylobacterium extorquens PA1]
 gi|218529206|ref|YP_002420022.1| NADH dehydrogenase subunit I [Methylobacterium chloromethanicum
           CM4]
 gi|240137574|ref|YP_002962045.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens AM1]
 gi|254560045|ref|YP_003067140.1| NADH-quinone oxidoreductase subunit I [Methylobacterium extorquens
           DM4]
 gi|226737399|sp|A9W1M5|NUOI_METEP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772593|sp|B7KQ58|NUOI_METC4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|163662114|gb|ABY29481.1| NADH-quinone oxidoreductase, chain I [Methylobacterium extorquens
           PA1]
 gi|218521509|gb|ACK82094.1| NADH-quinone oxidoreductase, chain I [Methylobacterium
           chloromethanicum CM4]
 gi|240007542|gb|ACS38768.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens AM1]
 gi|254267323|emb|CAX23155.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens DM4]
          Length = 162

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E  ++   E       +  K++ L +  + +  
Sbjct: 117 IV--EGPNFEFSVETREEL------LYDKQKLLENGDRWERE 150


>gi|157156899|ref|YP_001462967.1| hypothetical protein EcE24377A_1889 [Escherichia coli E24377A]
 gi|157078929|gb|ABV18637.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
          Length = 208

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   CV VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|332799832|ref|YP_004461331.1| Fe-S cluster domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332697567|gb|AEE92024.1| Fe-S cluster domain protein [Tepidanaerobacter sp. Re1]
          Length = 443

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +          I  ++CIDCG C   CP  A
Sbjct: 16 DKCKGC--TNCIKGCPTEAIRVRNGKAHILDNKCIDCGECIRICPNSA 61


>gi|325829783|ref|ZP_08163241.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           sp. HGA1]
 gi|325487950|gb|EGC90387.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           sp. HGA1]
          Length = 267

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP        N   I  D CI CG C   CP  AI
Sbjct: 217 CIGC--QKCAKTCPTQSITVENNLARIDTDTCIGCGTCIEVCPTHAI 261



 Score = 41.1 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  + DC E CP D          I    C  CG C   CP   I    
Sbjct: 139 GCLGYGDCAEACPFDAIVVENGVARIDTAACTGCGTCAKICPRGIISMVD 188



 Score = 33.8 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE 28
           + T+ CI C    C+EVCP     +
Sbjct: 241 IDTDTCIGC--GTCIEVCPTHAISK 263


>gi|293392063|ref|ZP_06636397.1| electron transport protein HydN [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952597|gb|EFE02716.1| electron transport protein HydN [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 199

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C  + C  VCPV       + + ++   CI C +C   CP  AI   
Sbjct: 51  CRHCDDSPCATVCPVHAITHEGDTIQLNESLCIGCKLCGIACPFGAITQH 100


>gi|218782193|ref|YP_002433511.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763577|gb|ACL06043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 320

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             + C+ C    CVE C        +    +  D C+ CG+C  +CP  AI  + +    
Sbjct: 252 DPDKCLGC--GQCVEACGFLAVKMKDGRPVVESDRCLGCGICVDKCPSGAIVLERDYSKP 309

Query: 65  LWLKINS 71
             L +++
Sbjct: 310 EPLDLSA 316


>gi|297584153|ref|YP_003699933.1| dimethylsulfoxide reductase subunit B [Bacillus selenitireducens
           MLS10]
 gi|297142610|gb|ADH99367.1| dimethylsulfoxide reductase, chain B [Bacillus selenitireducens
           MLS10]
          Length = 179

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 2   TYV--VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            YV  VT +C  C    CVE CP    ++ E+ +     ++C+ C +C   CP D     
Sbjct: 49  PYVDHVTISCNHCDSPKCVENCPTGAMHKREDGIVDYDHEKCVGCKMCLWSCPYDGPVYL 108

Query: 59  TEP 61
            + 
Sbjct: 109 EDE 111


>gi|158301718|ref|XP_321378.4| AGAP001711-PA [Anopheles gambiae str. PEST]
 gi|157012608|gb|EAA00878.4| AGAP001711-PA [Anopheles gambiae str. PEST]
          Length = 214

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 112 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 169

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 170 VEGP----------NFEFSTETHEELLYNKEKLLSNGDKWESE 202


>gi|114564835|ref|YP_752349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114336128|gb|ABI73510.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 220

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y  + +C  C    CV+ CP    ++   +  + +H D CI C  C   CP DA + D
Sbjct: 77  SYYTSISCNHCNEPVCVKACPTGAMHKRREDGLVLVHTDLCIGCNSCAEACPYDAPQLD 135



 Score = 33.8 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 13/71 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           V T+ CI C    C E CP D              +C  C          +C   CP+ A
Sbjct: 112 VHTDLCIGCN--SCAEACPYDAPQLDPQRKV--MTKCDGCYDRLAQGKQPICVGSCPLRA 167

Query: 55  IKPDTEPGLEL 65
           +  DT   L  
Sbjct: 168 LDFDTMENLRA 178


>gi|300924706|ref|ZP_07140654.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|301326565|ref|ZP_07219904.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|300419133|gb|EFK02444.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300846727|gb|EFK74487.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
          Length = 208

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   CV VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|255536541|ref|YP_003096912.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342737|gb|ACU08850.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacteriaceae bacterium 3519-10]
          Length = 1031

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + CI    C   CP    + +         
Sbjct: 856 CQHCNHAPCETVCPVAATSHGRQGQNQMAYNRCIGTRYCANNCPYKVRRFNWFTYN---- 911

Query: 68  KINSEY 73
            +N ++
Sbjct: 912 -LNDKF 916


>gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
 gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
          Length = 595

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CP D      +    I+ D+C+ CG C  +C   AI  +
Sbjct: 542 IDADKCKGC--TLCARTCPNDAITGAVKEPHVINQDKCVKCGACMEKCRFGAIYKE 595


>gi|158340815|ref|YP_001521983.1| nitroreductase family protein, putative [Acaryochloris marina
          MBIC11017]
 gi|158311056|gb|ABW32669.1| nitroreductase family protein, putative [Acaryochloris marina
          MBIC11017]
          Length = 290

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          +  E C  C    CV++CP       +G     +    CI+CG C   CP +AI   + P
Sbjct: 6  IDAERCQKC--GKCVQICPTIFAQHTKGAIPHLLDTTRCIECGHCVAICPSEAISHSSFP 63


>gi|86137745|ref|ZP_01056321.1| NarH, respiratory nitrate reductase, beta subunit [Roseobacter sp.
           MED193]
 gi|85825337|gb|EAQ45536.1| NarH, respiratory nitrate reductase, beta subunit [Roseobacter sp.
           MED193]
          Length = 507

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|326424045|ref|NP_761415.2| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           CMCP6]
 gi|319999422|gb|AAO10942.2| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           CMCP6]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|260888161|ref|ZP_05899424.1| iron-sulfur cluster-binding protein [Selenomonas sputigena ATCC
           35185]
 gi|330840027|ref|YP_004414607.1| protein of unknown function DUF362 [Selenomonas sputigena ATCC
           35185]
 gi|260862190|gb|EEX76690.1| iron-sulfur cluster-binding protein [Selenomonas sputigena ATCC
           35185]
 gi|329747791|gb|AEC01148.1| protein of unknown function DUF362 [Selenomonas sputigena ATCC
           35185]
          Length = 375

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C+   C + C  D     EN   +  + C  CG C   C  +A+  +     
Sbjct: 193 VHEELCRGCR--RCAKECGSDAISYVENKAVVDKELCKGCGRCIGSCTFNALYNEVWDAA 250

Query: 64  ELWLKINSEYAT 75
           ++  +  +EYA 
Sbjct: 251 DILDRRMAEYAQ 262


>gi|304316617|ref|YP_003851762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778119|gb|ADL68678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 56

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +++T+ CI C    C   CPV+  +EG     +  D CIDCG CE  CP  A+K +
Sbjct: 1  MAHIITDECISC--GACAAECPVEAIHEGTGKYEVDADTCIDCGACEAVCPTGAVKAE 56


>gi|169831040|ref|YP_001717022.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169637884|gb|ACA59390.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 995

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E C  C    CV VCP +      N   I P +C  CG+C  ECP  AI 
Sbjct: 919 VTPEKCAACLG--CVRVCPFNVPVIAGNISWIEPVQCQGCGICVAECPNAAIH 969



 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 20/77 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGV 45
           V  E C  C   DC  VCPV+                            + P+ CI+C +
Sbjct: 104 VAAEACKGC--GDCAAVCPVEVPDAFNMGFGTRKAIYQPYSQAYPRAYVLDPEHCIECTL 161

Query: 46  CEPECPVDAIKPDTEPG 62
           C   CP  A+       
Sbjct: 162 CVEACPTGAVTLGAPEE 178


>gi|134045121|ref|YP_001096607.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C5]
 gi|132662746|gb|ABO34392.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanococcus maripaludis C5]
          Length = 138

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +   C+ C+   C+ VCP D   + ++ + I  ++CI C +C   CPV AI+ D
Sbjct: 31 IPIRCMHCEDAPCLNVCPEDAIKKIDDKVVIESEKCIGCALCAEVCPVGAIQID 84


>gi|146291733|ref|YP_001182157.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563423|gb|ABP74358.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 224

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  + CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCNEPVCVKACPTGAMHKRREDGLVQVATELCIGCESCARACPYDAPQLDI 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|317485988|ref|ZP_07944843.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922761|gb|EFV43992.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 175

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C  C++  C  +CP     + +  + ++   C  C +C   CP  AI  ++
Sbjct: 69  SCRQCENAPCARICPTGALQQDDGIVTMNAQICSGCQLCIMACPYGAISLES 120


>gi|317490042|ref|ZP_07948533.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316910883|gb|EFV32501.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 267

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP        N   I  D CI CG C   CP  AI
Sbjct: 217 CIGC--QKCAKTCPTQSITVENNLARIDTDTCIGCGTCIEVCPTHAI 261



 Score = 41.1 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  + DC E CP D          I    C  CG C   CP   I    
Sbjct: 139 GCLGYGDCAEACPFDAIVVENGVARIDTAACTGCGTCAKICPRGIISMVD 188



 Score = 33.8 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE 28
           + T+ CI C    C+EVCP     +
Sbjct: 241 IDTDTCIGC--GTCIEVCPTHAISK 263


>gi|296536148|ref|ZP_06898276.1| NADH-quinone oxidoreductase subunit I [Roseomonas cervicalis ATCC
           49957]
 gi|296263519|gb|EFH10016.1| NADH-quinone oxidoreductase subunit I [Roseomonas cervicalis ATCC
           49957]
          Length = 163

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 38/111 (34%), Gaps = 20/111 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPALAITIEAEPREDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                P  E   +   E       I  K   L +  + +    +  +  +P
Sbjct: 119 V--EGPNFEFATETREEL------IYNKDRLLSNGDRWEPEIARRLELDAP 161


>gi|294634810|ref|ZP_06713334.1| electron transport protein HydN [Edwardsiella tarda ATCC 23685]
 gi|291091778|gb|EFE24339.1| electron transport protein HydN [Edwardsiella tarda ATCC 23685]
          Length = 157

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  C+   C  VCP       ++F+ +  ++CI C  C   CP   ++  T    + +
Sbjct: 35 CRQCEDAPCANVCPNGAISRQQDFICVDQEKCIGCKTCVVACPYGTMEVVTTAVTQRY 92


>gi|298528233|ref|ZP_07015637.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511885|gb|EFI35787.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 643

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 8   NCILCKHTD-----------CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C+ C               CV VCP +    GE    I   +C  CG+C  +CP  AI 
Sbjct: 464 RCLHCSLGAHVSQDCAVCLNCVLVCPYNVPRPGEEKAVIDMSQCQACGICAGQCPAAAID 523

Query: 57  PDTEPGLE 64
              EP  E
Sbjct: 524 LGLEPRTE 531


>gi|225076878|ref|ZP_03720077.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens
           NRL30031/H210]
 gi|224951764|gb|EEG32973.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens
           NRL30031/H210]
          Length = 283

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I  D  
Sbjct: 74  ALIDEAVCIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMV 129

Query: 61  PGLELWLKINSEYATQWPN 79
           P  + +L     ++T    
Sbjct: 130 PVSQPFLPSARRFSTSAEP 148



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+++ C  C    CV  CPVDC   
Sbjct: 103 MHTVISDECTGC--GLCVTPCPVDCIDM 128


>gi|222054905|ref|YP_002537267.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
 gi|221564194|gb|ACM20166.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
          Length = 442

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          V+   CI C    C   CPVD     E     I+PD+CI C  C   CP  AI+ 
Sbjct: 18 VLEGKCIAC-GARCQSSCPVDAIEMNEAGEPVINPDKCIGCVKCVKVCPAQAIEM 71



 Score = 33.8 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE 28
            +  + CI C    CV+VCP      
Sbjct: 47 PVINPDKCIGCVK--CVKVCPAQAIEM 71


>gi|218709475|ref|YP_002417096.1| formate dehydrogenase iron-sulfur subunit [Vibrio splendidus LGP32]
 gi|218322494|emb|CAV18651.1| Formate dehydrogenase iron-sulfur subunit [Vibrio splendidus LGP32]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|242277839|ref|YP_002989968.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120733|gb|ACS78429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 200

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C  VCP       ++ + +  D C+ C  C   CP  A++ 
Sbjct: 62  CRHCEDAPCAAVCPNGAIQRTDSGVQVDEDHCVGCKTCLAACPFGAMEM 110


>gi|188587655|ref|YP_001920981.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188497936|gb|ACD51072.1| nitroreductase family protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 273

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V  E CI CK   C+  CPV      +    I  + CI CG C   CP  A+  D  
Sbjct: 1   MFEVNKEKCISCK--QCINDCPVSDILLIDGKANIKNESCIKCGHCIAICPTKAVSTDDY 58

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
              E+     SE++ +  N+    +   S  K   +K + EK
Sbjct: 59  NMDEVKEYNKSEFSIESDNLLNFIKFRRSVRKFKDIKVEKEK 100


>gi|164686674|ref|ZP_02210702.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM
          16795]
 gi|164604064|gb|EDQ97529.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM
          16795]
          Length = 455

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  + C  C   +CV+VCPV       +    I  D+C+ CG C   C   A   D    
Sbjct: 5  IDKDLCTGC--QECVKVCPVSAITGEPHKPQEIDADKCVICGQCVQVCKSYASIIDHGEE 62

Query: 63 L 63
           
Sbjct: 63 F 63


>gi|150401707|ref|YP_001325473.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014410|gb|ABR56861.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 173

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 9  CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C  C    C EVCPVD  ++  +  + +  ++CI CG+C   CP  AI    
Sbjct: 44 CQHCASAPCKEVCPVDAIYHLDDGTVYLDEEKCIGCGLCPMACPFGAIVMSD 95


>gi|82543958|ref|YP_407905.1| hypothetical protein SBO_1458 [Shigella boydii Sb227]
 gi|81245369|gb|ABB66077.1| putative oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
          Length = 225

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|2127911|pir||B64333 formate hydrogenlyase, subunit 2 - Methanococcus jannaschii
          Length = 168

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C EVCPV      + ++ ++ D CI CG+C   CP  AI  + +  
Sbjct: 48  CQHCASAPCKEVCPVSAIEHKDGYVYLNEDVCIGCGLCALACPFGAILMEDKAY 101


>gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 584

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           TY +  E C  C    C   CP             I   +C  CG C   C   A+  +
Sbjct: 528 TYSILPEKCTGC--GLCARKCPTKAITGERLKPHVIDQSKCTKCGTCMNVCRFGAVNVE 584


>gi|329945315|ref|ZP_08293106.1| nitrate reductase, beta subunit [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328529190|gb|EGF56118.1| nitrate reductase, beta subunit [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 562

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSACPSGAMYKRTEDGIVLVDQDACRGWRMCVSACPYKKVYF 234


>gi|302871132|ref|YP_003839768.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor obsidiansis OB47]
 gi|302573991|gb|ADL41782.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor obsidiansis OB47]
          Length = 57

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +T++CI C    C   CPV C   G+    I+ ++CI CG C   CPVDA KP  
Sbjct: 1  MAYYITDDCISC--GACESECPVQCISPGDGKYVINEEQCISCGACANVCPVDAPKPRD 57


>gi|297526529|ref|YP_003668553.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Staphylothermus hellenicus DSM 12710]
 gi|297255445|gb|ADI31654.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Staphylothermus hellenicus DSM 12710]
          Length = 640

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 7   ENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C  C    CV +  CP     +G     I P+ C  CG+C   CP +AI    E G  
Sbjct: 577 DKCTGC--MVCVNLLGCPAIVVPKGSKKPVILPELCAGCGLCAQVCPFNAIVL-KEKGSP 633

Query: 65  LWLK 68
            WL+
Sbjct: 634 NWLE 637


>gi|260778688|ref|ZP_05887580.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604852|gb|EEX31147.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
 gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
          Length = 628

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +++  E C  C    C   CPV     + +    I  ++CI CG C   C   AI  +
Sbjct: 572 FIISPERCKGCSK--CARNCPVGAISGKIKEPFTIDTEKCIKCGACASACAFGAIHIE 627


>gi|169333719|ref|ZP_02860912.1| hypothetical protein ANASTE_00103 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259568|gb|EDS73534.1| hypothetical protein ANASTE_00103 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 256

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V    CI C    C   CP       +    I   EC+ CG CE  CP +AI
Sbjct: 4  MIEVDENKCIGC--GLCKRDCPTANIKLEDKKAKIITMECLYCGHCEAICPKNAI 56


>gi|149914591|ref|ZP_01903121.1| NADH dehydrogenase subunit I [Roseobacter sp. AzwK-3b]
 gi|149811384|gb|EDM71219.1| NADH dehydrogenase subunit I [Roseobacter sp. AzwK-3b]
          Length = 164

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKQKLLENGDRWEAE 152


>gi|257790458|ref|YP_003181064.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           lenta DSM 2243]
 gi|257474355|gb|ACV54675.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           lenta DSM 2243]
          Length = 267

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP        N   I  D CI CG C   CP  AI
Sbjct: 217 CIGC--QKCAKTCPTQSITVENNLARIDTDTCIGCGTCIEVCPTHAI 261



 Score = 41.1 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  + DC E CP D          I    C  CG C   CP   I    
Sbjct: 139 GCLGYGDCAEACPFDAIVVENGVARIDTAACTGCGTCAKICPRGIISMVD 188



 Score = 33.8 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE 28
           + T+ CI C    C+EVCP     +
Sbjct: 241 IDTDTCIGC--GTCIEVCPTHAISK 263


>gi|66773136|ref|NP_001019573.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8b [Danio rerio]
 gi|66267262|gb|AAH95111.1| Zgc:109991 [Danio rerio]
          Length = 210

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAVCPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N EY+  T    +  K++ L +  + +
Sbjct: 166 VEGP----------NFEYSTETHEELLYNKEKLLNNGDRWE 196


>gi|51244332|ref|YP_064216.1| iron-sulfur center hydrogenase [Desulfotalea psychrophila LSv54]
 gi|50875369|emb|CAG35209.1| related to iron-sulfur center hydrogenase [Desulfotalea
           psychrophila LSv54]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C+   C  VC V+   + +  + +  ++C+ C  C   CP  A+
Sbjct: 62  VPVQCRHCEDAPCANVCQVEAISQRDGVIFVDEEKCMGCKTCMLACPFGAM 112


>gi|262165716|ref|ZP_06033453.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus VM223]
 gi|262171469|ref|ZP_06039147.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus MB-451]
 gi|261892545|gb|EEY38531.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus MB-451]
 gi|262025432|gb|EEY44100.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus VM223]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|288856257|ref|NP_001165784.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Nasonia vitripennis]
          Length = 201

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 99  EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 156

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 157 VEGP----------NFEFSTETHEEMLYNKEKLLNNGDKWESE 189


>gi|153832374|ref|ZP_01985041.1| formate dehydrogenase iron-sulfur subunit [Vibrio harveyi HY01]
 gi|156974561|ref|YP_001445468.1| hypothetical protein VIBHAR_02279 [Vibrio harveyi ATCC BAA-1116]
 gi|269963064|ref|ZP_06177400.1| formate dehydrogenase, iron-sulfur subunit [Vibrio harveyi 1DA3]
 gi|148871403|gb|EDL70266.1| formate dehydrogenase iron-sulfur subunit [Vibrio harveyi HY01]
 gi|156526155|gb|ABU71241.1| hypothetical protein VIBHAR_02279 [Vibrio harveyi ATCC BAA-1116]
 gi|269832196|gb|EEZ86319.1| formate dehydrogenase, iron-sulfur subunit [Vibrio harveyi 1DA3]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|78044396|ref|YP_359648.1| formate dehydrogenase-O, iron-sulfur subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996511|gb|ABB15410.1| formate dehydrogenase-O, iron-sulfur subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 260

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + C  C    C + CP D  Y  +    +   D CI C  C+  CP +  + DT+    
Sbjct: 69  KQQCFHCGDAACEKACPEDAIYHTKEGAVVRDYDRCIGCDYCQRACPFNIPRIDTQNKKM 128

Query: 65  L 65
            
Sbjct: 129 H 129


>gi|15898395|ref|NP_343000.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
 gi|227830008|ref|YP_002831787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|229578323|ref|YP_002836721.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|229582722|ref|YP_002841121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|13814808|gb|AAK41790.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
 gi|227456455|gb|ACP35142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|228009037|gb|ACP44799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|228013438|gb|ACP49199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
          Length = 228

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C++  C  VCP           + +   +C+ C  C   CP  A    T   
Sbjct: 72  FVPRLCMQCENPPCYYVCPTGATQIVAGGIVVVDEYKCMGCLYCVEACPYGARYFYTYED 131

Query: 63  LELWLK 68
           +E   +
Sbjct: 132 IEKSKE 137


>gi|41033733|emb|CAF18533.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Thermoproteus tenax]
          Length = 650

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 3   YVV-TENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YVV  + C  C    C  +  C      + +    I P  C  C +C   CP +AIKP  
Sbjct: 580 YVVDADKCKSC--GICYNLLKC-YAISKQPDGKAWIDPSLCNGCSMCAQVCPYNAIKPQE 636

Query: 60  EPGLELWLKI 69
              +  WL++
Sbjct: 637 PGKVNRWLEL 646


>gi|312793989|ref|YP_004026912.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877607|ref|ZP_07737565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795617|gb|EFR11988.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181129|gb|ADQ41299.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 57

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA
Sbjct: 1  MAYYITDDCISC--GACESECPVQCISAGDGKYVINEEECISCGACANVCPVDA 52


>gi|326793210|ref|YP_004311031.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Clostridium lentocellum DSM 5427]
 gi|326543974|gb|ADZ85833.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Clostridium lentocellum DSM 5427]
          Length = 105

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + CI C    C  VCP    YE +N + I    C  CG+C+ EC    I  + E G+E 
Sbjct: 46  DKCIHCNW--CYMVCPEGVIYENDNKIQIDYRFCKGCGICQKECKKQCIIMEEEGGVED 102


>gi|255656355|ref|ZP_05401764.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-23m63]
 gi|296450201|ref|ZP_06891962.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP08]
 gi|296878582|ref|ZP_06902587.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP07]
 gi|296260964|gb|EFH07798.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP08]
 gi|296430389|gb|EFH16231.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP07]
          Length = 595

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 540 VDHDKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 595


>gi|226499536|ref|NP_001148902.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
 gi|195623106|gb|ACG33383.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
          Length = 223

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 121 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 179 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 211


>gi|197105259|ref|YP_002130636.1| NADH dehydrogenase I, I subunit [Phenylobacterium zucineum HLK1]
 gi|196478679|gb|ACG78207.1| NADH dehydrogenase I, I subunit [Phenylobacterium zucineum HLK1]
          Length = 163

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P LE  ++   E          K+  L +  + +    K
Sbjct: 119 V--EGPNLEFAVETREEL------YYDKERLLDNGDRWEREIAK 154


>gi|229578417|ref|YP_002836815.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.G.57.14]
 gi|229582865|ref|YP_002841264.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.N.15.51]
 gi|228009131|gb|ACP44893.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.G.57.14]
 gi|228013581|gb|ACP49342.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.N.15.51]
          Length = 612

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C        CP     + +    I    CI CG C P CP  AI        
Sbjct: 546 VDLEICTGCSICYDYFTCPAIIPRKDK-KAEIDNYTCIGCGACIPVCPFKAISL-KGNKP 603

Query: 64  ELWLKI 69
           E W ++
Sbjct: 604 EKWDEL 609


>gi|146341105|ref|YP_001206153.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. ORS278]
 gi|156632703|sp|A4YVK2|NUOI_BRASO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146193911|emb|CAL77928.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I)
           (NDH-1, chain I) [Bradyrhizobium sp. ORS278]
          Length = 162

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K + L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKAKLLANGDRWEREISK 153


>gi|37679883|ref|NP_934492.1| formate dehydrogenase, iron-sulfur subunit [Vibrio vulnificus
           YJ016]
 gi|320156342|ref|YP_004188721.1| formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           MO6-24/O]
 gi|37198628|dbj|BAC94463.1| formate dehydrogenase, iron-sulfur subunit [Vibrio vulnificus
           YJ016]
 gi|319931654|gb|ADV86518.1| formate dehydrogenase-O, iron-sulfur subunit / Putative formate
           dehydrogenase iron-sulfur subunit [Vibrio vulnificus
           MO6-24/O]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|325473842|gb|EGC77030.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           F0402]
          Length = 500

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++T  C  C    C+  CP            I  ++CI+CG+C   CP  A+
Sbjct: 120 YMITNACQACVARPCMMNCPKTAIAISGGRSRIDEEKCINCGICLKNCPYHAV 172



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEP 48
           +  E CI C                  C E CPV    + EN    I   +CI CG C  
Sbjct: 152 IDEEKCINCGICLKNCPYHAVIKIPVPCEEACPVGAISKDENGKERIDYHKCIFCGNCMR 211

Query: 49  ECPVDAIK 56
           ECP  A+ 
Sbjct: 212 ECPFGAMM 219


>gi|323700499|ref|ZP_08112411.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323460431|gb|EGB16296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 302

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
              V   C+ C+   CV  C      + EN       ++CI C  C   CP +    + +
Sbjct: 105 PTFVKVQCMHCQDPACVSACITGALTKKENGAVHYDVNKCIGCRYCMAACPFEIPAYEYD 164


>gi|317502269|ref|ZP_07960441.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089012|ref|ZP_08337919.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896330|gb|EFV18429.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406464|gb|EGG85977.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 56

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSC--GSCEAECPVGAISEGDGKYEIDADACVDCGACEAACPTGAISAE 56


>gi|225574327|ref|ZP_03782937.1| hypothetical protein RUMHYD_02392 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038478|gb|EEG48724.1| hypothetical protein RUMHYD_02392 [Blautia hydrogenotrophica DSM
           10507]
          Length = 433

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C +VCP+          +    +  + C+ CGVC   C V AI+ +  P 
Sbjct: 301 DKCVGC--GKCAKVCPILAIEMAGDSKKKKAEVDTEICLGCGVCARNCLVKAIEMERRPV 358

Query: 63  L 63
            
Sbjct: 359 Q 359


>gi|125972856|ref|YP_001036766.1| hydrogenase large subunit-like protein [Clostridium thermocellum
          ATCC 27405]
 gi|256005726|ref|ZP_05430681.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360]
 gi|281417055|ref|ZP_06248075.1| Fe-S cluster domain protein [Clostridium thermocellum JW20]
 gi|125713081|gb|ABN51573.1| hydrogenase large subunit-like protein [Clostridium thermocellum
          ATCC 27405]
 gi|255990299|gb|EEU00426.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360]
 gi|281408457|gb|EFB38715.1| Fe-S cluster domain protein [Clostridium thermocellum JW20]
 gi|316940906|gb|ADU74940.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 1313]
          Length = 448

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C  T+C++ CP +     ++   I  + CIDCG C   CP  A K  T+P
Sbjct: 14 KCKGC--TNCIKRCPTEAIRVRKSKARIINERCIDCGECIRVCPYHAKKAITDP 65


>gi|323704059|ref|ZP_08115672.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfotomaculum nigrificans DSM 574]
 gi|323530979|gb|EGB20905.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfotomaculum nigrificans DSM 574]
          Length = 764

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +V    C+ C    CVEVCP           G     ++P  C  CG C   C   AI 
Sbjct: 690 AFVNKRKCMAC--GVCVEVCPAKAASLVTDERGNTAAEVNPALCKGCGACSSSCRCGAIN 747


>gi|313906031|ref|ZP_07839384.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium cellulosolvens 6]
 gi|313469144|gb|EFR64493.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium cellulosolvens 6]
          Length = 601

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V  + C+ CK   C+++ CP       +    I P++C+ CGVC+  C +DAI
Sbjct: 526 HVEEDKCVGCK--SCMKIGCP--SLSMKDGKSVIDPNQCVGCGVCQQMCKLDAI 575


>gi|291086291|ref|ZP_06355299.2| electron transport protein HydN [Citrobacter youngae ATCC 29220]
 gi|291068768|gb|EFE06877.1| electron transport protein HydN [Citrobacter youngae ATCC 29220]
          Length = 195

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 72  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 118


>gi|226329169|ref|ZP_03804687.1| hypothetical protein PROPEN_03072 [Proteus penneri ATCC 35198]
 gi|225202355|gb|EEG84709.1| hypothetical protein PROPEN_03072 [Proteus penneri ATCC 35198]
          Length = 337

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEP 61
            + + C+ C   +CV VCPV    +      +H     C  C  C   CP +  K D + 
Sbjct: 113 FIKKQCMHCVDANCVSVCPVSALTKDPKTGIVHYHADICTGCRYCMVGCPYNIPKYDYDD 172

Query: 62  GLELWLKINSEYATQWPNITTKKESLPS 89
                 K   E   Q       K  LP 
Sbjct: 173 PFGKLYK--CELCNQKGVERLDKGLLPG 198


>gi|218701594|ref|YP_002409223.1| putative oxidoreductase [Escherichia coli IAI39]
 gi|218371580|emb|CAR19419.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli IAI39]
          Length = 162

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|222530184|ref|YP_002574066.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457031|gb|ACM61293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 373

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + T  C+ C    CV+ C        E     I  ++C+ CG C   C   A     +
Sbjct: 189 PVIKTSKCVGC--GMCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFGAATVRWD 246

Query: 61  PGLELWLKINSEY 73
               +  +  +EY
Sbjct: 247 EAASIASEKIAEY 259


>gi|15668439|ref|NP_247237.1| carbon monoxide dehydrogenase iron sulfur subunit CooF2
          [Methanocaldococcus jannaschii DSM 2661]
 gi|37078241|sp|Q57713|FER9_METJA RecName: Full=Uncharacterized ferredoxin MJ0265
 gi|2826268|gb|AAB98252.1| carbon monoxide dehydrogenase, iron sulfur subunit CooF-1 (cooF2)
          [Methanocaldococcus jannaschii DSM 2661]
          Length = 166

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C    C EVCPV      + ++ ++ D CI CG+C   CP  AI  + +  
Sbjct: 46 CQHCASAPCKEVCPVSAIEHKDGYVYLNEDVCIGCGLCALACPFGAILMEDKAY 99


>gi|332298379|ref|YP_004440301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema brennaborense DSM 12168]
 gi|332181482|gb|AEE17170.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema brennaborense DSM 12168]
          Length = 56

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C   CPV    E  +   I    C+ CG C   CP +AI  +
Sbjct: 1  MAYKITDACVNC--GSCEGECPVGAISEDGDKRVIDAASCVSCGTCAAACPTEAIVEE 56


>gi|330720723|gb|EGG98952.1| Respiratory nitrate reductase beta chain [gamma proteobacterium
           IMCC2047]
          Length = 511

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFN 234

Query: 59  TE 60
            +
Sbjct: 235 WK 236


>gi|295107121|emb|CBL04664.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 253

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E+C  C+   C+  CPV   Y  E      +  D CI CG+C   CP +    D+E
Sbjct: 150 EHCKQCEDPACMNYCPVHAIYADEKSGARKVDADRCIGCGMCSQACPWNMPVVDSE 205



 Score = 41.5 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPG 62
           V  + CI C    C + CP +              +CI CG C  +CP  AI   D E  
Sbjct: 180 VDADRCIGC--GMCSQACPWNMPVVDSETGV--STKCISCGRCAEQCPNGAIKFIDWEDI 235

Query: 63  LELWLK 68
            +  + 
Sbjct: 236 AQKVID 241


>gi|269216660|ref|ZP_06160514.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269129894|gb|EEZ60977.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 181

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
            V+  C  C    C+  CPV  + + EN + +   D CI C  C   CP  A        
Sbjct: 51  FVSMACNHCADPQCLANCPVGAYTKLENGIVVQDHDACIGCQTCVKACPYGAPHYVEREQ 110


>gi|253688807|ref|YP_003017997.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755385|gb|ACT13461.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 223

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPYQ 138


>gi|227887703|ref|ZP_04005508.1| formate-dependent nitrite reductase [Fe-S] protein [Escherichia
           coli 83972]
 gi|227835099|gb|EEJ45565.1| formate-dependent nitrite reductase [Fe-S] protein [Escherichia
           coli 83972]
 gi|307555091|gb|ADN47866.1| hydrogenase-2 electron transfer subunit [Escherichia coli ABU
           83972]
          Length = 328

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +C+ VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCISVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|222528526|ref|YP_002572408.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|312623185|ref|YP_004024798.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kronotskyensis 2002]
 gi|222455373|gb|ACM59635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|312203652|gb|ADQ46979.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor kronotskyensis 2002]
          Length = 57

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA
Sbjct: 1  MAYYITDDCISC--GACESECPVSCISPGDGKYVINEEECISCGACANVCPVDA 52


>gi|210620552|ref|ZP_03292100.1| hypothetical protein CLOHIR_00043 [Clostridium hiranonis DSM
          13275]
 gi|210155266|gb|EEA86272.1| hypothetical protein CLOHIR_00043 [Clostridium hiranonis DSM
          13275]
          Length = 56

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C   CPV    EG++   I  D C++CG C   CPV A + +
Sbjct: 1  MAYKITDACVSC--GACAAECPVGAISEGDSIYVIDADACVECGACAEACPVGAPQAE 56


>gi|194334931|ref|YP_002016791.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194312749|gb|ACF47144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 188

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C++  CV  CP    +  E+    ++   C  C  C   CP DA     E  ++
Sbjct: 58  SERCQHCENAPCVTYCPTGASHYAEDGTVQVNRSRCTGCKACLAACPYDARYVHPEGFVD 117

Query: 65  L 65
            
Sbjct: 118 K 118


>gi|159900206|ref|YP_001546453.1| cyclic nucleotide-binding protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893245|gb|ABX06325.1| cyclic nucleotide-binding protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 454

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T++C  C+    CVE CP       +N      D C  C  C   CP DA+
Sbjct: 335 ITQSCRQCRVGAECVEACPEAAIQWDDNGALRITDACTGCNECVLACPYDAV 386


>gi|41018387|sp|Q00388|VHUB_METVO RecName: Full=Polyferredoxin protein vhuB
 gi|1747410|emb|CAA43512.1| polyferredoxin [Methanococcus voltae PS]
          Length = 398

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VTE C+ C    CV VCPVD     +    I  ++CI C VC   CP +AI 
Sbjct: 128 VTEACVGCSE--CVPVCPVDAISIEDELAVIDTEKCIYCSVCAQTCPWNAIY 177



 Score = 41.5 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ VTE CI C+   CVEVCP D   Y  E+ +   P+ C  C +CE  CPVDAI  + E
Sbjct: 192 SFTVTEECIGCEK--CVEVCPGDMITYNREDLIVKLPEACPACHLCEQNCPVDAISLEVE 249

Query: 61  PGLEL 65
            G   
Sbjct: 250 YGSAK 254


>gi|120597257|ref|YP_961831.1| glycyl-radical activating family protein [Shewanella sp. W3-18-1]
 gi|146291318|ref|YP_001181742.1| glycyl-radical activating family protein [Shewanella putrefaciens
           CN-32]
 gi|120557350|gb|ABM23277.1| glycyl-radical enzyme activating protein family [Shewanella sp.
           W3-18-1]
 gi|145563008|gb|ABP73943.1| glycyl-radical enzyme activating protein family [Shewanella
           putrefaciens CN-32]
          Length = 306

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           NCI C    CV  CPV         L I  + CI CG C   CP  A+
Sbjct: 60  NCIHC--GRCVSACPVGAIDASRQGL-IDRNACIHCGACAEVCPAGAM 104



 Score = 33.4 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 6/40 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL----AIHPDE 39
           +    CI C    C EVCP     +    +     I    
Sbjct: 84  IDRNACIHC--GACAEVCPAGAMVQSGKRMSVVEVIDELR 121


>gi|323499043|ref|ZP_08104023.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sinaloensis DSM
           21326]
 gi|323315878|gb|EGA68909.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sinaloensis DSM
           21326]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|284176086|ref|ZP_06390055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
 gi|261602959|gb|ACX92562.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 228

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C++  C  VCP           + +   +C+ C  C   CP  A    T   
Sbjct: 72  FVPRLCMQCENPPCYYVCPTGATQIVAGGIVVVDEYKCMGCLYCVEACPYGARYFYTYED 131

Query: 63  LELWLK 68
           +E   +
Sbjct: 132 IEKSKE 137


>gi|227826899|ref|YP_002828678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|284996919|ref|YP_003418686.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227458694|gb|ACP37380.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|284444814|gb|ADB86316.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|323474014|gb|ADX84620.1| Fe-S-cluster-containing hydrogenase component 1, HybA [Sulfolobus
           islandicus REY15A]
 gi|323476935|gb|ADX82173.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 228

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C++  C  VCP           + +   +C+ C  C   CP  A    T   
Sbjct: 72  FVPRLCMQCENPPCYYVCPTGATQIVAGGIVVVDEYKCMGCLYCVEACPYGARYFYTYED 131

Query: 63  LELWLK 68
           +E   +
Sbjct: 132 IEKSKE 137


>gi|227498031|ref|ZP_03928206.1| nitrate reductase [Actinomyces urogenitalis DSM 15434]
 gi|226832560|gb|EEH64943.1| nitrate reductase [Actinomyces urogenitalis DSM 15434]
          Length = 541

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVAACPSGAMYKRSEDGIVLVDQDACRGWRMCVSACPYKKVYF 234


>gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
 gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
          Length = 606

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C   CP      G+    AI P++CI CG C   C  DA+
Sbjct: 543 PEKCIGCDM--CARGCPASAISGGKKEIHAIDPEKCIACGSCREACKFDAV 591


>gi|53724167|ref|YP_103351.1| nitrate reductase subunit beta [Burkholderia mallei ATCC 23344]
 gi|67643022|ref|ZP_00441772.1| nitrate reductase, beta subunit [Burkholderia mallei GB8 horse 4]
 gi|121598978|ref|YP_993553.1| nitrate reductase, beta subunit [Burkholderia mallei SAVP1]
 gi|124384819|ref|YP_001029018.1| nitrate reductase, beta subunit [Burkholderia mallei NCTC 10229]
 gi|126451243|ref|YP_001081061.1| nitrate reductase, beta subunit [Burkholderia mallei NCTC 10247]
 gi|167000614|ref|ZP_02266425.1| nitrate reductase, beta subunit [Burkholderia mallei PRL-20]
 gi|254178561|ref|ZP_04885216.1| nitrate reductase, beta subunit [Burkholderia mallei ATCC 10399]
 gi|254200310|ref|ZP_04906676.1| nitrate reductase, beta subunit [Burkholderia mallei FMH]
 gi|254209386|ref|ZP_04915732.1| nitrate reductase, beta subunit [Burkholderia mallei JHU]
 gi|254357941|ref|ZP_04974214.1| nitrate reductase, beta subunit [Burkholderia mallei 2002721280]
 gi|52427590|gb|AAU48183.1| nitrate reductase, beta subunit [Burkholderia mallei ATCC 23344]
 gi|121227788|gb|ABM50306.1| nitrate reductase, beta subunit [Burkholderia mallei SAVP1]
 gi|124292839|gb|ABN02108.1| nitrate reductase, beta subunit [Burkholderia mallei NCTC 10229]
 gi|126244113|gb|ABO07206.1| nitrate reductase, beta subunit [Burkholderia mallei NCTC 10247]
 gi|147749906|gb|EDK56980.1| nitrate reductase, beta subunit [Burkholderia mallei FMH]
 gi|147750159|gb|EDK57230.1| nitrate reductase, beta subunit [Burkholderia mallei JHU]
 gi|148027068|gb|EDK85089.1| nitrate reductase, beta subunit [Burkholderia mallei 2002721280]
 gi|160699600|gb|EDP89570.1| nitrate reductase, beta subunit [Burkholderia mallei ATCC 10399]
 gi|238524262|gb|EEP87696.1| nitrate reductase, beta subunit [Burkholderia mallei GB8 horse 4]
 gi|243063426|gb|EES45612.1| nitrate reductase, beta subunit [Burkholderia mallei PRL-20]
          Length = 517

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREDDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|320449435|ref|YP_004201531.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Thermus
           scotoductus SA-01]
 gi|320149604|gb|ADW20982.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Thermus
           scotoductus SA-01]
          Length = 879

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C  VCPV    +  E    +  + C+    C   CP  A + +  P  E ++
Sbjct: 695 CQHCEKAPCEAVCPVAATEHSSEGLNLMVYNRCVGTKYCSANCPYKARRFNFFPYGEAFV 754


>gi|319424969|gb|ADV53043.1| surface localized dimethyl sulfoxide reductase, ferredoxin subunit,
           DmsB [Shewanella putrefaciens 200]
          Length = 226

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  + CI C  C   CP DA + D 
Sbjct: 80  AYYMSIGCNHCNEPVCVKACPTGAMHKRREDGLVQVATELCIGCESCARACPYDAPQLDI 139

Query: 60  E 60
           E
Sbjct: 140 E 140


>gi|262165512|ref|ZP_06033249.1| NrfC protein [Vibrio mimicus VM223]
 gi|262025228|gb|EEY43896.1| NrfC protein [Vibrio mimicus VM223]
          Length = 228

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           +C  C++  CV VCP    Y+ E    +   +  C+ CG C   CP       
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACPYQVRFFH 150


>gi|237813045|ref|YP_002897496.1| nitrate reductase, beta subunit [Burkholderia pseudomallei MSHR346]
 gi|237503555|gb|ACQ95873.1| nitrate reductase, beta subunit [Burkholderia pseudomallei MSHR346]
          Length = 517

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREDDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|167816589|ref|ZP_02448269.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 91]
          Length = 517

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREDDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|167739373|ref|ZP_02412147.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 14]
          Length = 517

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREDDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|27380587|ref|NP_772116.1| formate dehydrogenase iron-sulfur subunit [Bradyrhizobium japonicum
           USDA 110]
 gi|27353752|dbj|BAC50741.1| formate dehydrogenase iron-sulfur subunit [Bradyrhizobium japonicum
           USDA 110]
          Length = 198

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|194474799|gb|ACF74512.1| arsenate respiratory reductase iron sulfur subunit
           [Halarsenatibacter silvermanii]
          Length = 229

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 9   CILCKHTDCVEVCPVD----CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C +  CVE CPVD          N + +  D CI C  CE ECP   I  + E    
Sbjct: 58  CNHCDNAPCVEACPVDPKAIFKDSESNLVLMDADRCIGCRNCENECPYGVISYNAEEAHP 117

Query: 65  LWLK 68
            W  
Sbjct: 118 FWRD 121


>gi|164686675|ref|ZP_02210703.1| hypothetical protein CLOBAR_00270 [Clostridium bartlettii DSM
           16795]
 gi|164604065|gb|EDQ97530.1| hypothetical protein CLOBAR_00270 [Clostridium bartlettii DSM
           16795]
          Length = 183

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C+  CPV      +N + +   +CI C  C   CP  AI   T+      ++
Sbjct: 65  CRHCEDAPCLNTCPVKAISRIDNSVIVDEVKCIGCKTCLLACPFGAIDLLTQYEDSKPVE 124


>gi|21229366|ref|NP_635288.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1]
 gi|20907953|gb|AAM32960.1| Coenzyme F420 hydrogenase beta subunit [Methanosarcina mazei Go1]
          Length = 296

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ ENC+ CK   C + C +      E+  +I  ++CI CG C   C  DA++ +
Sbjct: 166 VLEENCVGCK--RCEKACKMGAIKVIEDKASIDTEKCILCGACIAACRKDALRAE 218


>gi|53719920|ref|YP_108906.1| respiratory nitrate reductase subunit beta [Burkholderia
           pseudomallei K96243]
 gi|76809189|ref|YP_334143.1| nitrate reductase subunit beta [Burkholderia pseudomallei 1710b]
 gi|126440788|ref|YP_001059651.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 668]
 gi|126455300|ref|YP_001066934.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1106a]
 gi|134277438|ref|ZP_01764153.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 305]
 gi|167720381|ref|ZP_02403617.1| nitrate reductase, beta subunit [Burkholderia pseudomallei DM98]
 gi|167824984|ref|ZP_02456455.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 9]
 gi|167846499|ref|ZP_02472007.1| nitrate reductase, beta subunit [Burkholderia pseudomallei B7210]
 gi|167895078|ref|ZP_02482480.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 7894]
 gi|167903463|ref|ZP_02490668.1| nitrate reductase, beta subunit [Burkholderia pseudomallei NCTC
           13177]
 gi|167911714|ref|ZP_02498805.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 112]
 gi|167919713|ref|ZP_02506804.1| nitrate reductase, beta subunit [Burkholderia pseudomallei BCC215]
 gi|217421081|ref|ZP_03452586.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 576]
 gi|226195484|ref|ZP_03791072.1| nitrate reductase, beta subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|242316875|ref|ZP_04815891.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1106b]
 gi|254184344|ref|ZP_04890934.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1655]
 gi|254191376|ref|ZP_04897880.1| nitrate reductase, beta subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195709|ref|ZP_04902135.1| nitrate reductase, beta subunit [Burkholderia pseudomallei S13]
 gi|254257943|ref|ZP_04948997.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1710a]
 gi|254297004|ref|ZP_04964457.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 406e]
 gi|52210334|emb|CAH36313.1| respiratory nitrate reductase beta chain [Burkholderia pseudomallei
           K96243]
 gi|76578642|gb|ABA48117.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1710b]
 gi|126220281|gb|ABN83787.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 668]
 gi|126228942|gb|ABN92482.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1106a]
 gi|134251088|gb|EBA51167.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 305]
 gi|157806783|gb|EDO83953.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 406e]
 gi|157939048|gb|EDO94718.1| nitrate reductase, beta subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169652454|gb|EDS85147.1| nitrate reductase, beta subunit [Burkholderia pseudomallei S13]
 gi|184214875|gb|EDU11918.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1655]
 gi|217396493|gb|EEC36510.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 576]
 gi|225932444|gb|EEH28443.1| nitrate reductase, beta subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|242140114|gb|EES26516.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1106b]
 gi|254216632|gb|EET06016.1| nitrate reductase, beta subunit [Burkholderia pseudomallei 1710a]
          Length = 517

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREDDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|323697845|ref|ZP_08109757.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323457777|gb|EGB13642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 192

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  CK+  CV+ C      +      + I PD+C   G C   CP   I+ D
Sbjct: 65  PCQHCKNPQCVKACKAGAITKDPQNGIVRIDPDKCTGSGACIEACPYHVIQFD 117


>gi|294496337|ref|YP_003542830.1| electron transport complex, RnfABCDGE type subunit beta
           [Methanohalophilus mahii DSM 5219]
 gi|292667336|gb|ADE37185.1| electron transport complex, RnfABCDGE type, B subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 265

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V    CI CK   C + CPVD  +  +    I  ++CI CG C  +CP   I+ 
Sbjct: 213 VCENGCIGCKL--CEKACPVDAVHVTKFLAEIDQEKCISCGKCVEKCPQGCIEM 264



 Score = 34.2 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           C+      CV VCP D  + G++ L  I+ + C  CG+C   CP D
Sbjct: 143 CMG--RGTCVRVCPFDAIHIGDDRLPKINKNLCTSCGICIASCPND 186


>gi|258622879|ref|ZP_05717895.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM573]
 gi|258625040|ref|ZP_05719961.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM603]
 gi|258582673|gb|EEW07501.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM603]
 gi|258584818|gb|EEW09551.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM573]
          Length = 199

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 100


>gi|251778159|ref|ZP_04821079.1| nitroreductase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082474|gb|EES48364.1| nitroreductase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 273

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V  E CI CK   C+  CPV      E    I  + CI CG C   CP  A+  D  
Sbjct: 1   MFEVNKEKCISCK--QCINDCPVSDILLIEGKANIKNESCIKCGHCIAICPTKAVSTDDY 58

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
              E+     SE++ +  N+    +   S  K   +K + EK
Sbjct: 59  NMDEVKEYNKSEFSIEADNLLNFIKFRRSVRKFKDIKVEKEK 100


>gi|229529447|ref|ZP_04418837.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           12129(1)]
 gi|229333221|gb|EEN98707.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           12129(1)]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|289803762|ref|ZP_06534391.1| electron transport protein HydN [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 148

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 25 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 71


>gi|237653622|ref|YP_002889936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237624869|gb|ACR01559.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 216

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C  VCP     +  + L  I  D CI C  C   CP +A    T    
Sbjct: 58  CQHCDEPPCETVCPTTATKKRADGLVTIDYDLCIGCAYCSVACPYNARYKVTRDTP 113


>gi|218706392|ref|YP_002413911.1| putative oxidoreductase [Escherichia coli UMN026]
 gi|300896220|ref|ZP_07114769.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300936168|ref|ZP_07151104.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|218433489|emb|CAR14392.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli UMN026]
 gi|300359954|gb|EFJ75824.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300458625|gb|EFK22118.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 162

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|189423278|ref|YP_001950455.1| nitrate reductase subunit beta [Geobacter lovleyi SZ]
 gi|189419537|gb|ACD93935.1| nitrate reductase, beta subunit [Geobacter lovleyi SZ]
          Length = 483

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C     C   CP   +  + 
Sbjct: 180 CNHCLNPACVASCPSRAIYKRGEDGVVLVDQEVCKGWRFCTSACPYKKVYFNW 232


>gi|126699996|ref|YP_001088893.1| indolepyruvate oxidoreductase subunit [Clostridium difficile 630]
 gi|255101532|ref|ZP_05330509.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-63q42]
 gi|115251433|emb|CAJ69266.1| Indole pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           difficile]
          Length = 595

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 540 VDHDKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 595


>gi|15641521|ref|NP_231153.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587191|ref|ZP_01676965.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           2740-80]
 gi|121726940|ref|ZP_01680141.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V52]
 gi|147675071|ref|YP_001217065.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|153214795|ref|ZP_01949624.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 1587]
 gi|153801187|ref|ZP_01955773.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-3]
 gi|153818524|ref|ZP_01971191.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae NCTC
           8457]
 gi|153822821|ref|ZP_01975488.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae B33]
 gi|153824883|ref|ZP_01977550.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-2]
 gi|153829769|ref|ZP_01982436.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 623-39]
 gi|227081670|ref|YP_002810221.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae M66-2]
 gi|229508540|ref|ZP_04398043.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae BX
           330286]
 gi|229511389|ref|ZP_04400868.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae B33]
 gi|229514918|ref|ZP_04404378.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TMA
           21]
 gi|229518528|ref|ZP_04407971.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC9]
 gi|229520548|ref|ZP_04409972.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TM
           11079-80]
 gi|229523595|ref|ZP_04413000.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229607945|ref|YP_002878593.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           MJ-1236]
 gi|254226566|ref|ZP_04920148.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V51]
 gi|254848633|ref|ZP_05237983.1| formate dehydrogenase [Vibrio cholerae MO10]
 gi|255745047|ref|ZP_05418997.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholera CIRS
           101]
 gi|261211641|ref|ZP_05925928.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC341]
 gi|262161666|ref|ZP_06030684.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae INDRE
           91/1]
 gi|262169544|ref|ZP_06037235.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC27]
 gi|262190850|ref|ZP_06049070.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae CT
           5369-93]
 gi|297579081|ref|ZP_06941009.1| formate dehydrogenase [Vibrio cholerae RC385]
 gi|9656016|gb|AAF94667.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121548534|gb|EAX58588.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           2740-80]
 gi|121630702|gb|EAX63089.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V52]
 gi|124115137|gb|EAY33957.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 1587]
 gi|124123307|gb|EAY42050.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-3]
 gi|125620902|gb|EAZ49254.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V51]
 gi|126510927|gb|EAZ73521.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae NCTC
           8457]
 gi|126519680|gb|EAZ76903.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae B33]
 gi|146316954|gb|ABQ21493.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|148874748|gb|EDL72883.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 623-39]
 gi|149741601|gb|EDM55631.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-2]
 gi|227009558|gb|ACP05770.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae M66-2]
 gi|227013426|gb|ACP09636.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|229337176|gb|EEO02193.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229342372|gb|EEO07366.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TM
           11079-80]
 gi|229343217|gb|EEO08192.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC9]
 gi|229347623|gb|EEO12582.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TMA
           21]
 gi|229351354|gb|EEO16295.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae B33]
 gi|229354494|gb|EEO19417.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae BX
           330286]
 gi|229370600|gb|ACQ61023.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           MJ-1236]
 gi|254844338|gb|EET22752.1| formate dehydrogenase [Vibrio cholerae MO10]
 gi|255737518|gb|EET92913.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholera CIRS
           101]
 gi|260838991|gb|EEX65623.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC341]
 gi|262021778|gb|EEY40488.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC27]
 gi|262028398|gb|EEY47053.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae INDRE
           91/1]
 gi|262033269|gb|EEY51787.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae CT
           5369-93]
 gi|297536675|gb|EFH75508.1| formate dehydrogenase [Vibrio cholerae RC385]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|86148458|ref|ZP_01066748.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio sp. MED222]
 gi|85833755|gb|EAQ51923.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio sp. MED222]
          Length = 228

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP        E
Sbjct: 98  SCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLLACPYQVRFFHPE 152


>gi|86137588|ref|ZP_01056165.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193]
 gi|85825923|gb|EAQ46121.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193]
          Length = 165

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 120

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 121 V--EGPNFEFATETREELF------YDKDKLLANGERWEAE 153


>gi|329897534|ref|ZP_08272141.1| Thioredoxin reductase [gamma proteobacterium IMCC3088]
 gi|328921129|gb|EGG28534.1| Thioredoxin reductase [gamma proteobacterium IMCC3088]
          Length = 438

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +    C+ C    CV  CP        G   + I+   CI  G C+  CP DAI
Sbjct: 55  IDPSKCLGC--GACVNACPEGDVLGLIGGKSVLINGANCIGHGACKAACPFDAI 106


>gi|325578553|ref|ZP_08148653.1| hydrogenase-4 component A [Haemophilus parainfluenzae ATCC 33392]
 gi|325159789|gb|EGC71919.1| hydrogenase-4 component A [Haemophilus parainfluenzae ATCC 33392]
          Length = 214

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C  + C  VCPV       + + ++   CI C +C   CP  AI   
Sbjct: 66  CRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAITQH 115


>gi|300087560|ref|YP_003758082.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527293|gb|ADJ25761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 265

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
            V + C  C    CV VCPV    +  +   +     C+ C  C   CP           
Sbjct: 70  FVHKRCFHCVDPVCVSVCPVAAMRKTPDGPVVWDEARCMGCRYCAQACPFRIPNYQ---Y 126

Query: 63  LELWLKINSEYATQWPNITTKKES 86
              W +++  +   W  I    + 
Sbjct: 127 HSTWPEVSKCWF-CWDRIAEGLQP 149


>gi|254460189|ref|ZP_05073605.1| NADH-ubiquinone oxidoreductase (complex i) subunit [Rhodobacterales
           bacterium HTCC2083]
 gi|206676778|gb|EDZ41265.1| NADH-ubiquinone oxidoreductase (complex i) subunit
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 164

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E          K + L +  + +
Sbjct: 120 V--EGPNFEFATETREELF------YDKDKLLENGDRWE 150


>gi|163738809|ref|ZP_02146223.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis
           BS107]
 gi|161388137|gb|EDQ12492.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis
           BS107]
          Length = 164

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKDKLLSNGERWEAE 152


>gi|149194135|ref|ZP_01871233.1| HYDROGENASE-3 SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
 gi|149136088|gb|EDM24566.1| HYDROGENASE-3 SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
          Length = 187

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+   C  C    C  VCPV     GE+ + ++ + CI C +C   CP  AI+P  E
Sbjct: 48  MYGVMPNQCRQCDDAPCANVCPVGALRFGEDEIELYEEICIGCKLCSIACPFGAIRPAAE 107

Query: 61  PGL 63
              
Sbjct: 108 AMP 110


>gi|146295776|ref|YP_001179547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409352|gb|ABP66356.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 57

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T++CI C    C   CPV C   GE    I+ +ECI CG C   CPVDA
Sbjct: 1  MAYYITDDCISC--GACESECPVQCISPGEGKYVINEEECISCGACANVCPVDA 52


>gi|28210901|ref|NP_781845.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88]
 gi|28203340|gb|AAO35782.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88]
          Length = 295

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VV ENC+ CK     EVC +      +  + I  D+C +CG+C  +C  + ++   E
Sbjct: 173 VVEENCVGCKICSVEEVCKIKACKAEDGKIKIDFDKCNNCGLCIDKCHFNGVELHKE 229


>gi|45359065|ref|NP_988622.1| hypothetical protein MMP1502 [Methanococcus maripaludis S2]
 gi|45047940|emb|CAF31058.1| conserved archaeal protein, pyruvate oxidoreductase-associated
          [Methanococcus maripaludis S2]
          Length = 138

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +   C+ C+   C+ VCP D   +  + + +HP++C+ C +C   CPV AI+ D
Sbjct: 31 IPIRCMHCEDAPCLNVCPEDAIEKIADKVVVHPEKCVGCALCAEVCPVGAIQID 84


>gi|119776308|ref|YP_929048.1| polysulfide reductase subunit B [Shewanella amazonensis SB2B]
 gi|119768808|gb|ABM01379.1| polysulfide reductase, subunit B [Shewanella amazonensis SB2B]
          Length = 188

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y G++ +  I  ++C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGDDGIVSIKAEKCVGCMYCVAACPYKVRFMNPE 112


>gi|303230564|ref|ZP_07317317.1| 4Fe-4S binding domain protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302514757|gb|EFL56746.1| 4Fe-4S binding domain protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 271

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       EN        CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRC--GLCVADCPTGLLVMSENGPVTGKGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|224373537|ref|YP_002607909.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Nautilia
           profundicola AmH]
 gi|223588424|gb|ACM92160.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Nautilia
           profundicola AmH]
          Length = 222

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   C+ VCP    +  E  +  +  D CI C  C   CP +A   D 
Sbjct: 61  CNHCEDAPCITVCPTGASHFVEGGIVKVDYDMCIICKGCMEACPYEARFVDE 112


>gi|171914161|ref|ZP_02929631.1| putative anaerobic reductase component [Verrucomicrobium spinosum
           DSM 4136]
          Length = 534

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 2   TYV--VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
            YV  VT  C  C    C E CPV  + + E    +    D+CI C  C  +CP D
Sbjct: 103 PYVQTVTTACHHCTDPACAEGCPVLAYEKDEETGIVRHLDDQCIGCSYCILKCPYD 158


>gi|121534132|ref|ZP_01665957.1| Fe-S cluster domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307235|gb|EAX48152.1| Fe-S cluster domain protein [Thermosinus carboxydivorans Nor1]
          Length = 444

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +   C  C +  C++ CP +          I    CIDCG C   CP  A
Sbjct: 11 IANRCQGCVN--CIKRCPTEAIRIRGGKAQITEARCIDCGECIRRCPNHA 58


>gi|108760337|ref|YP_632055.1| oxidoreductase iron-sulfur binding subunit [Myxococcus xanthus DK
           1622]
 gi|108464217|gb|ABF89402.1| oxidoreductase, iron-sulfur binding subunit [Myxococcus xanthus DK
           1622]
          Length = 988

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+T+   C+ C++  C  VCPV    +  E    +  + C+    C   CP    + +  
Sbjct: 814 VITQPLMCVHCEYAPCEYVCPVAATVHSDEGLNQMVYNRCVGTRYCSNNCPYKVRRFN-- 871

Query: 61  PGLELWLKINS 71
                +L+ N 
Sbjct: 872 -----YLEYNR 877


>gi|254975966|ref|ZP_05272438.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-66c26]
 gi|255093353|ref|ZP_05322831.1| indolepyruvate oxidoreductase subunit [Clostridium difficile CIP
           107932]
 gi|255315099|ref|ZP_05356682.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-76w55]
 gi|255517769|ref|ZP_05385445.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-97b34]
 gi|255650882|ref|ZP_05397784.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-37x79]
 gi|306520773|ref|ZP_07407120.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-32g58]
          Length = 595

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 540 VDHDKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 595


>gi|89896213|ref|YP_519700.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89896217|ref|YP_519704.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219667990|ref|YP_002458425.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219667996|ref|YP_002458431.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89335661|dbj|BAE85256.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89335665|dbj|BAE85260.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219538250|gb|ACL19989.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
 gi|219538256|gb|ACL19995.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 191

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CVE CP    ++ EN +      +CI C  C   CP    +   E G     
Sbjct: 58  CNHCENPKCVEGCPTQALHKLENGIVDHDKAKCIGCRYCTWNCPYGVPQFIPELGQISKC 117

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  +      N          A +   +++   K+
Sbjct: 118 NMCKDLIEAGENPVCVDACPMRALEWGDLEELKAKH 153


>gi|329119761|ref|ZP_08248439.1| electron transport complex protein RnfB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464124|gb|EGF10431.1| electron transport complex protein RnfB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 281

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C+  CPVD      +    +   EC  CG+C   CPVD I     
Sbjct: 77  AWIDEAACIGC--TACIRACPVDAIMGASKLMHTVIAAECTGCGLCVAPCPVDCIHMRPS 134

Query: 61  PG 62
             
Sbjct: 135 EN 136



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC 40
           M  V+   C  C    CV  CPVDC +   +  ++ P  C
Sbjct: 106 MHTVIAAECTGC--GLCVAPCPVDCIHMRPSENSVLPQAC 143


>gi|294637678|ref|ZP_06715956.1| cytochrome c nitrite reductase, Fe-S protein [Edwardsiella tarda
           ATCC 23685]
 gi|291089154|gb|EFE21715.1| cytochrome c nitrite reductase, Fe-S protein [Edwardsiella tarda
           ATCC 23685]
          Length = 223

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CVEVCP    +       + + PD C+ C  C   CP  
Sbjct: 91  SCQHCDSPPCVEVCPTGASFRDATSGIVDVDPDLCVGCQYCIAACPYR 138


>gi|229497131|ref|ZP_04390834.1| ferredoxin [Porphyromonas endodontalis ATCC 35406]
 gi|229315948|gb|EEN81878.1| ferredoxin [Porphyromonas endodontalis ATCC 35406]
          Length = 320

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C + CP        N   I   +C  C  C   CP  AI  +  P  + 
Sbjct: 219 ACIGC--GKCAKECPFGAITVENNLAYIDHTKCRLCRKCVAVCPTHAIHEENFPPRKP 274



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 21/76 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCP-----------------VDCFYEGENFLAIHPDE--CID 42
             V  + C  C    CV+ CP                 V C  + +  +A+   +  CI 
Sbjct: 165 PVVDQDKCTSC--GACVKACPKTIIELRKKGPKNRRVFVSCVNKDKGGVAMKACKNACIG 222

Query: 43  CGVCEPECPVDAIKPD 58
           CG C  ECP  AI  +
Sbjct: 223 CGKCAKECPFGAITVE 238


>gi|256376171|ref|YP_003099831.1| nitrate reductase, beta subunit [Actinosynnema mirum DSM 43827]
 gi|255920474|gb|ACU35985.1| nitrate reductase, beta subunit [Actinosynnema mirum DSM 43827]
          Length = 511

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CP    Y+ E    + +  D+C    +C   CP   + 
Sbjct: 182 CEHCLNPACVSACPSGAMYKREEDGIVLVDQDKCRGWRMCVSSCPYKKVY 231


>gi|182417534|ref|ZP_02948861.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum
           5521]
 gi|237665714|ref|ZP_04525702.1| glycyl-radical enzyme activating protein family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378703|gb|EDT76230.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum
           5521]
 gi|237658661|gb|EEP56213.1| glycyl-radical enzyme activating protein family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 298

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    CV  CP       ++ + I  ++C  C  C   CP  A++ + E     
Sbjct: 54  KCIHCL--SCVNSCPSQAIQHQDDKIIIDHEKCTGCLTCANICPQKALENEGEYKEIK 109


>gi|266659|sp|P29921|NQO9_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1
           subunit 9
 gi|150609|gb|AAA25593.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 163

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPAQAITIDAERREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 119 V--EGPNFEYATETREELF------YDKQKLLANGERWEAE 151


>gi|323187456|gb|EFZ72765.1| nitrate reductase, beta subunit [Escherichia coli RN587/1]
          Length = 313

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 184 CEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWK 237


>gi|293406384|ref|ZP_06650310.1| oxidoreductase [Escherichia coli FVEC1412]
 gi|298382120|ref|ZP_06991717.1| oxidoreductase [Escherichia coli FVEC1302]
 gi|291426390|gb|EFE99422.1| oxidoreductase [Escherichia coli FVEC1412]
 gi|298277260|gb|EFI18776.1| oxidoreductase [Escherichia coli FVEC1302]
          Length = 163

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 573

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           V  + C  C    C   CPV C          I  ++CI CG C   CP   I
Sbjct: 520 VDPDKCRKC--GLCARNCPVKCISGDRQTPYFIDQEKCIKCGTCMQVCPFGVI 570


>gi|298530405|ref|ZP_07017807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509779|gb|EFI33683.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 280

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C+ C    C   CP    Y+ E  L     ++C+ CG C   CP  
Sbjct: 89  SCMQCIRPSCARACPTGATYKDEFGLVSFDSEKCMACGYCVDACPFQ 135



 Score = 36.9 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA----IHPDECIDCGVCEPECPVDAIKP 57
             +E C+ C +  CV+ CP                +  + C  CG C   CP +A+  
Sbjct: 117 FDSEKCMACGY--CVDACPFQHPELSRFTYFSLRNVWINRCTACGACAQACPENALFF 172


>gi|224584620|ref|YP_002638418.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469147|gb|ACN46977.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|323131194|gb|ADX18624.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 195

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 72  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 118


>gi|182889618|gb|AAI65418.1| Zgc:109991 protein [Danio rerio]
          Length = 210

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAVCPAQAITIEAETRADGNRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N EY+  T    +  K++ L +  + +
Sbjct: 166 VEGP----------NFEYSTETHEELLYNKEKLLNNGDRWE 196


>gi|297619793|ref|YP_003707898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378770|gb|ADI36925.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 395

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C+ C    CV VCPVD          I  D+CI C VC   CP +AI 
Sbjct: 128 VTDACVGCSE--CVPVCPVDAISIENELAVIDTDKCIYCTVCAQTCPWNAIY 177



 Score = 41.1 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ VTE CI C+   CVEVCP D   Y  E+ +   P+ C  C +CE  CPVDAI  + E
Sbjct: 192 SFTVTEECIGCEK--CVEVCPGDMITYNAEDLIVKLPEACPACHLCEQNCPVDAISLEVE 249

Query: 61  PGLEL 65
            G   
Sbjct: 250 YGSAK 254



 Score = 33.8 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 11/69 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPV 52
             + T+ CI C  T C + CP +  Y      +             ECI C  C   CP 
Sbjct: 154 AVIDTDKCIYC--TVCAQTCPWNAIYVAGKKPSKRQKEIKSFTVTEECIGCEKCVEVCPG 211

Query: 53  DAIKPDTEP 61
           D I  + E 
Sbjct: 212 DMITYNAED 220


>gi|254286426|ref|ZP_04961384.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           AM-19226]
 gi|150423593|gb|EDN15536.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           AM-19226]
          Length = 202

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|148976175|ref|ZP_01812918.1| formate dehydrogenase, iron-sulfur subunit [Vibrionales bacterium
           SWAT-3]
 gi|145964570|gb|EDK29824.1| formate dehydrogenase, iron-sulfur subunit [Vibrionales bacterium
           SWAT-3]
          Length = 202

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|24373008|ref|NP_717050.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
 gi|24347167|gb|AAN54495.1|AE015587_4 anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
          Length = 224

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  + CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCSQPVCVKACPTGAMHKRREDGLVQVATELCIGCESCARACPYDAPQLDI 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|323226340|gb|EGA10551.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
          Length = 298

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 141 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFN 199

Query: 59  TE 60
            +
Sbjct: 200 WK 201


>gi|261868396|ref|YP_003256318.1| electron transport protein HydN [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413728|gb|ACX83099.1| electron transport protein HydN [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 199

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C  + C  VCPV       + + ++   CI C +C   CP  AI   
Sbjct: 51  CRHCDDSPCATVCPVHAITHEGDTIQLNESLCIGCKLCGIACPFGAITQH 100


>gi|219123199|ref|XP_002181917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406518|gb|EEC46457.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 163

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 36/106 (33%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP                      I   +CI CG C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAACPAQAITIEVQEREDGARRTTRYDIDMTKCIYCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQK 99
                         N E+A  T    +  K++ L +  K +    K
Sbjct: 119 VEGP----------NFEFATETHEELLYDKEKLLSNGDKWERQIAK 154


>gi|298498401|ref|ZP_07008208.1| formate dehydrogenase [Vibrio cholerae MAK 757]
 gi|297542734|gb|EFH78784.1| formate dehydrogenase [Vibrio cholerae MAK 757]
          Length = 202

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|320355404|ref|YP_004196743.1| hydrogenase 2 protein HybA [Desulfobulbus propionicus DSM 2032]
 gi|320123906|gb|ADW19452.1| hydrogenase 2 protein HybA [Desulfobulbus propionicus DSM 2032]
          Length = 343

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            V ++C+ C    CV VCPV    +      +  + + C  C  C+  CP      + E 
Sbjct: 126 FVKQHCLHCLEPACVSVCPVAALQKQPDTGIVTYNKNRCFGCRYCQIACPFGIPAYEWEK 185

Query: 62  GLELWLK---INSEYAT 75
                +K    N  YA 
Sbjct: 186 ASPSVVKCQLCNHRYAQ 202


>gi|307109800|gb|EFN58037.1| hypothetical protein CHLNCDRAFT_20716 [Chlorella variabilis]
          Length = 169

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 67  EERCIACKL--CEAICPAQAITIETEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 124

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQK 99
                         N EY+T      +  K++ L +  + +   +K
Sbjct: 125 VEGP----------NFEYSTGTREELLYDKQKLLANGDRWEVEVEK 160


>gi|291562108|emb|CBL40924.1| Uncharacterized Fe-S center protein [butyrate-producing bacterium
           SS3/4]
          Length = 373

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C + C  D          I  D+C  CG C   C  DAI        EL  +
Sbjct: 197 CRGC--GRCAKECGSDAITYVNKKAVIDYDKCKGCGRCIGACSFDAIYNPNYNANELLDR 254

Query: 69  INSEYAT 75
             +EYA 
Sbjct: 255 KMAEYAQ 261


>gi|229584320|ref|YP_002842821.1| nitrate reductase, beta subunit [Sulfolobus islandicus M.16.27]
 gi|228019369|gb|ACP54776.1| nitrate reductase, beta subunit [Sulfolobus islandicus M.16.27]
          Length = 493

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C+  CP    Y+   +  +     +C     C   CP   +  + 
Sbjct: 181 CNHCLNPSCMAACPAGAIYKRVEDGIVLTDQQKCRGWRFCIAACPYKKVYYNW 233


>gi|226941414|ref|YP_002796488.1| DmsB [Laribacter hongkongensis HLHK9]
 gi|226716341|gb|ACO75479.1| DmsB [Laribacter hongkongensis HLHK9]
          Length = 204

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++ +C  C    C +VCP     +  N    +    CI C  C+  CP  A + + +
Sbjct: 59  SYYLSVSCNHCADPACTKVCPTGAMAKDANGFVAVDDAVCIGCKSCQMACPYGAPQYNAD 118


>gi|225389590|ref|ZP_03759314.1| hypothetical protein CLOSTASPAR_03338 [Clostridium asparagiforme
          DSM 15981]
 gi|225044343|gb|EEG54589.1| hypothetical protein CLOSTASPAR_03338 [Clostridium asparagiforme
          DSM 15981]
          Length = 258

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CP       +    +   +CI CG C   CP  A+  
Sbjct: 9  INPETCIGC--GLCRRDCPAGNIRIKDKKAKVITQDCIMCGHCVAICPKAAVSM 60


>gi|225016109|ref|ZP_03705342.1| hypothetical protein CLOSTMETH_00053 [Clostridium methylpentosum
           DSM 5476]
 gi|224951106|gb|EEG32315.1| hypothetical protein CLOSTMETH_00053 [Clostridium methylpentosum
           DSM 5476]
          Length = 579

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++  E C  CK   C+++ CP     EG   + I   +C+ CG CE  C   AIK   E
Sbjct: 524 HIDQEACKKCKM--CLKIGCPAISIREGN--ILIDETQCVGCGQCECMCKFGAIKSKEE 578


>gi|218558540|ref|YP_002391453.1| 4Fe-4S ferridoxin-type subunit of oxidoreductase [Escherichia coli
           S88]
 gi|218689614|ref|YP_002397826.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli ED1a]
 gi|218365309|emb|CAR03030.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli S88]
 gi|218427178|emb|CAR08062.2| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli ED1a]
          Length = 222

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137


>gi|157373627|ref|YP_001472227.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316001|gb|ABV35099.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 234

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 104 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIGACPYDARFINKETDVAD 163

Query: 64  ELWLKINSEYAT 75
                +NS+ + 
Sbjct: 164 NCDFCLNSKLSK 175


>gi|94967507|ref|YP_589555.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549557|gb|ABF39481.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 455

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +    CI C    C   CP        G     + P +CI  G C   CPV AI  
Sbjct: 62  PLIDESRCIGC--GTCSTACPEGDVLGIIGGKAAIVKPYKCIGHGFCAEACPVGAITM 117


>gi|261252991|ref|ZP_05945564.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio orientalis CIP
           102891]
 gi|260936382|gb|EEX92371.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio orientalis CIP
           102891]
          Length = 202

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|253690637|ref|YP_003019827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251757215|gb|ACT15291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 173

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCP D      + + +    CI C  C   CP  AI   T+   + 
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAINVVTKASNDE 113


>gi|192289827|ref|YP_001990432.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
 gi|192283576|gb|ACE99956.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
          Length = 607

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+T  C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 544 VITSQCTAC--QSCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 601

Query: 59  TEPGLE 64
           T    +
Sbjct: 602 TPAVTQ 607


>gi|332653549|ref|ZP_08419294.1| coenzyme F420 hydrogenase beta subunit [Ruminococcaceae bacterium
           D16]
 gi|332518695|gb|EGJ48298.1| coenzyme F420 hydrogenase beta subunit [Ruminococcaceae bacterium
           D16]
          Length = 307

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  E C  CK   C + CP+      E    I P+ C  CG C  +CP  AI
Sbjct: 169 PLVHPELCKGCKM--CEKECPMHVAKVVEGKATIDPNTCNHCGRCIRKCPFHAI 220


>gi|301098846|ref|XP_002898515.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Phytophthora infestans T30-4]
 gi|262104940|gb|EEY62992.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Phytophthora infestans T30-4]
          Length = 211

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 36/106 (33%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 109 EERCIACKL--CEAICPAQAITIEAEPRADGARRTTSYDIDMTKCIYCGFCQEACPVDAI 166

Query: 56  KPDTEPGLELWLKINSEYAT--QWPNITTKKESLPSAAKMDGVKQK 99
                         N E+AT      +  K + L +  K +    K
Sbjct: 167 VEGP----------NFEFATESHEELLYDKAKLLANGDKWEFEIAK 202


>gi|227873973|ref|ZP_03992189.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oribacterium sinus F0268]
 gi|227840181|gb|EEJ50595.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oribacterium sinus F0268]
          Length = 258

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V++ CI C  T C + CPV              ++C  C  C   CP  AI  
Sbjct: 185 VSDACIGC--TLCAKKCPVQAIEMQNKKPVWVKEDCTMCLGCLHRCPKHAIYY 235


>gi|227329116|ref|ZP_03833140.1| nitrite reductase complex component [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 223

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDATNGIVDVNPDLCVGCQYCIAACPYQ 138


>gi|227113884|ref|ZP_03827540.1| electron transport protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 173

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCP D      + + +    CI C  C   CP  AI   T+   + 
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAINVVTKASNDE 113


>gi|254508923|ref|ZP_05121031.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           16]
 gi|219548162|gb|EED25179.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           16]
          Length = 199

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 100


>gi|194434710|ref|ZP_03066963.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
 gi|194417048|gb|EDX33164.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
          Length = 239

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E     +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGSVRVEKSQCIGCSYCIGACPYQ 154



 Score = 34.2 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAIKP--D 58
           CI C +  C+  CP    Y           + C +  +       C   CP  A+    +
Sbjct: 141 CIGCSY--CIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGRE 198

Query: 59  TEPGLELWLKINSEY 73
             P ++ WL+ N  Y
Sbjct: 199 DSPEIQAWLQDNKYY 213


>gi|90414273|ref|ZP_01222252.1| formate-dependent nitrite reductase [Photobacterium profundum 3TCK]
 gi|90324611|gb|EAS41158.1| formate-dependent nitrite reductase [Photobacterium profundum 3TCK]
          Length = 225

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C  C++  CV VCP    Y  +    + ++P+ C+ C  C   CP      D
Sbjct: 93  SCQHCENPSCVNVCPTGASYIDKETGIVDVNPERCVGCQYCIAACPYKVRYVD 145


>gi|83589957|ref|YP_429966.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83572871|gb|ABC19423.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 365

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E CI C    C   CP       E    I+ + CI CG C   CP  AI
Sbjct: 190 VEEEECIGC--GKCRRWCPAGAITVTE-KATINGELCIGCGECTVTCPRRAI 238


>gi|297568400|ref|YP_003689744.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924315|gb|ADH85125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 189

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV+VCP    Y+ E+ L  I    CI C  C   CP DA
Sbjct: 68  CQHCQNPPCVKVCPTSASYQTEDGLVAIDYKRCIVCASCILACPYDA 114


>gi|297563349|ref|YP_003682323.1| nitrate reductase subunit beta [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847797|gb|ADH69817.1| nitrate reductase, beta subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 588

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 200 CEHCLNPSCVAACPSGALYKRVEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 250


>gi|213418789|ref|ZP_03351855.1| putative anaerobic reductase component [Salmonella enterica
          subsp. enterica serovar Typhi str. E01-6750]
          Length = 116

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
           Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A
Sbjct: 27 AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 81


>gi|209694971|ref|YP_002262900.1| formate dehydrogenase iron-sulfur subunit [Aliivibrio salmonicida
           LFI1238]
 gi|208008923|emb|CAQ79139.1| formate dehydrogenase iron-sulfur subunit [Aliivibrio salmonicida
           LFI1238]
          Length = 202

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVRHNKDLCIGCGYCLFACPFGA 103


>gi|218962108|ref|YP_001741883.1| putative iron-sulfur cluster-binding protein [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730765|emb|CAO81677.1| putative iron-sulfur cluster-binding protein [Candidatus
           Cloacamonas acidaminovorans]
          Length = 374

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E C  C    CV+ CPV    ++ +    IH ++CI C  C   CP  AI
Sbjct: 313 VSERCKQC--GICVKSCPVKAISWQNDTKPYIHKEQCIKCLCCHELCPYQAI 362


>gi|16761396|ref|NP_457013.1| oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29140907|ref|NP_804249.1| oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213650794|ref|ZP_03380847.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864835|ref|ZP_03386954.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828737|ref|ZP_06546527.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25387629|pir||AC0816 probable oxidoreductase STY2717 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503695|emb|CAD07709.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136532|gb|AAO68098.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 619

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|219667334|ref|YP_002457769.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219537594|gb|ACL19333.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 191

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            Y  + +C  C    CVE CP    +  E+        +CI C  C   CP 
Sbjct: 51  AYHYSGSCNHCAQPKCVEGCPTGAMHVAEDGTVQHDRGKCIGCRYCTWACPY 102


>gi|301156415|emb|CBW15886.1| formate hydrogenlyase subunit 2 (fhl subunit 2) (hydrogenase-3
           component b) [Haemophilus parainfluenzae T3T1]
          Length = 199

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C  + C  VCPV       + + ++   CI C +C   CP  AI   
Sbjct: 51  CRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAITQH 100


>gi|237731328|ref|ZP_04561809.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906867|gb|EEH92785.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 208

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C++VCP+    + + +  +A+    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKDPQCMKVCPIGAITWKQEDGCIAVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|254173144|ref|ZP_04879817.1| oxidoreductase iron-sulfur protein [Thermococcus sp. AM4]
 gi|214032553|gb|EEB73382.1| oxidoreductase iron-sulfur protein [Thermococcus sp. AM4]
          Length = 165

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          + V  NC  C+   C+ VCP    +  E+      P +CI C +C   CP    K D E
Sbjct: 40 FTVPFNCRHCEKAPCLNVCPTGALFRDEDGAVAFDPLKCIGCLMCAVACPFGIPKLDEE 98


>gi|150388601|ref|YP_001318650.1| electron transfer flavoprotein, alpha subunit-like protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149948463|gb|ABR46991.1| Electron transfer flavoprotein, alpha subunit-like protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 392

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C  C    C++ C  D  ++  N   ++ + C  CG+C   CP +AI  + E   E+ 
Sbjct: 9  EKCTGC--GLCIKSCATDALHKENNKAMVNEN-CTLCGICIDSCPFEAISIEKENLEEVD 65

Query: 67 LKI 69
          L +
Sbjct: 66 LSL 68


>gi|320181301|gb|EFW56220.1| putative oxidoreductase, Fe-S subunit [Shigella boydii ATCC 9905]
          Length = 187

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|303241043|ref|ZP_07327553.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
          cellulolyticus CD2]
 gi|302591468|gb|EFL61206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
          cellulolyticus CD2]
          Length = 56

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +TE CI C    C   CPV C   G++   I    CI+CG C   CPVDA
Sbjct: 1  MAYFITEACISC--GACEPECPVSCISAGDSSYVIDESACIECGACANVCPVDA 52


>gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Coprococcus catus GD/7]
          Length = 594

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CP      + +    I   +C+ CG C  +C   AI  +
Sbjct: 541 IDADKCKGC--TLCARNCPNGAISGKLKEPHVIDQSKCLKCGACMEKCRFGAIYKE 594


>gi|260892256|ref|YP_003238353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ammonifex degensii KC4]
 gi|260864397|gb|ACX51503.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ammonifex degensii KC4]
          Length = 995

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPD 58
           V    C+ C    CV VCP              I P  C  CG C  ECP  AI+ +
Sbjct: 922 VDPAKCVACL--TCVRVCPYGAPRYTPEKGVVAIEPLACQGCGTCVGECPNAAIELE 976



 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 20/77 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGVCEP 48
           E C  C    C +VCPV+   E                        I    C  CG C  
Sbjct: 105 EECRAC--GVCFKVCPVEVPDEFNQGLSSRKAIYQPYPQAFPRAAVIDWGSCTRCGRCRD 162

Query: 49  ECPVDAIKPDTEPGLEL 65
            CP  AI  + EP  + 
Sbjct: 163 TCPTKAIDLEMEPEEKE 179


>gi|238762337|ref|ZP_04623308.1| Hydrogenase-2 operon protein hybA [Yersinia kristensenii ATCC
           33638]
 gi|238699322|gb|EEP92068.1| Hydrogenase-2 operon protein hybA [Yersinia kristensenii ATCC
           33638]
          Length = 329

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +  +PD C  C  C   CP +  K D    
Sbjct: 100 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYNPDVCTGCRYCMVGCPFNVPKYDYHNP 159

Query: 63  LEL 65
              
Sbjct: 160 FGK 162


>gi|219670089|ref|YP_002460524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|219540349|gb|ACL22088.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 56

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M YV+   CI C    C   CPV     G++   I  D C DCG C   CP  A
Sbjct: 1  MAYVINSECISC--GACEAECPVGAISAGDDLYVIDADTCTDCGSCAGVCPTGA 52


>gi|56477086|ref|YP_158675.1| formate dehydrogenase iron-sulfur subunit [Aromatoleum aromaticum
           EbN1]
 gi|56313129|emb|CAI07774.1| Formate dehydrogenase iron-sulfur subunit [Aromatoleum aromaticum
           EbN1]
          Length = 201

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C+ VCP +  Y  E  +     D CI CG C   CP  A
Sbjct: 54  ACMHCSDAPCIAVCPTNVIYHTEEGVVLHDKDGCIGCGYCFYACPFGA 101


>gi|323473926|gb|ADX84532.1| nitrate reductase, beta subunit [Sulfolobus islandicus REY15A]
          Length = 493

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C+  CP    Y+   +  +     +C     C   CP   +  + 
Sbjct: 181 CNHCLNPSCMAACPAGAIYKRVEDGIVLTDQQKCRGWRFCIAACPYKKVYYNW 233


>gi|258690620|gb|ACV88072.1| NarH [Halomonas sp. HGD1]
          Length = 325

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 160 CEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYNWK 213


>gi|227827153|ref|YP_002828932.1| nitrate reductase subunit beta [Sulfolobus islandicus M.14.25]
 gi|227458948|gb|ACP37634.1| nitrate reductase, beta subunit [Sulfolobus islandicus M.14.25]
          Length = 493

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C+  CP    Y+   +  +     +C     C   CP   +  + 
Sbjct: 181 CNHCLNPSCMAACPAGAIYKRVEDGIVLTDQQKCRGWRFCIAACPYKKVYYNW 233


>gi|163800919|ref|ZP_02194819.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. AND4]
 gi|159175268|gb|EDP60065.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. AND4]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|84385483|ref|ZP_00988514.1| formate dehydrogenase, iron-sulfur subunit [Vibrio splendidus
           12B01]
 gi|86145998|ref|ZP_01064325.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. MED222]
 gi|84379463|gb|EAP96315.1| formate dehydrogenase, iron-sulfur subunit [Vibrio splendidus
           12B01]
 gi|85836203|gb|EAQ54334.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. MED222]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|303328508|ref|ZP_07358945.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861502|gb|EFL84439.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 303

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +V + C+ C    C ++C        +    I P +C  CGVC   CP  AI  
Sbjct: 63  IVQDLCVQC--GRCADLCRFGAVRNEDGHFVIDPLDCEGCGVCRALCPARAIDF 114


>gi|299069368|emb|CBJ40634.1| nitrate reductase 1, Fe-S (beta) subunit [Ralstonia solanacearum
           CMR15]
          Length = 515

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|256419574|ref|YP_003120227.1| iron-sulfur binding oxidoreductase [Chitinophaga pinensis DSM 2588]
 gi|256034482|gb|ACU58026.1| putative iron-sulfur binding oxidoreductase [Chitinophaga pinensis
           DSM 2588]
          Length = 1028

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C +  C  VCPV    +  E    +  + CI    C   CP    + +   
Sbjct: 825 CQHCDNAPCENVCPVAATNHSSEGINQMAYNRCIGTRYCANNCPYKVRRFNWRD 878


>gi|255307406|ref|ZP_05351577.1| indolepyruvate oxidoreductase subunit [Clostridium difficile ATCC
           43255]
          Length = 633

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 578 VDHDKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 633


>gi|224023700|ref|ZP_03642066.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM
           18228]
 gi|224016922|gb|EEF74934.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM
           18228]
          Length = 322

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI     P  + 
Sbjct: 220 SCIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCEMECPKGAIHAINFPPRKQ 275



 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +  ++C  CG C   CP + I
Sbjct: 142 CLGC--GDCVSACQFDAIHINPETGLPEVDENKCTACGACSKACPRNII 188


>gi|241679736|ref|XP_002400836.1| NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit, putative
           [Ixodes scapularis]
 gi|215504281|gb|EEC13775.1| NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit, putative
           [Ixodes scapularis]
          Length = 210

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEYSTETHEELLYNKEKLLDNGDKWEPE 198


>gi|209964542|ref|YP_002297457.1| NADH dehydrogenase subunit I [Rhodospirillum centenum SW]
 gi|226737410|sp|B6ISX3|NUOI_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209958008|gb|ACI98644.1| NADH-quinone oxidoreductase chain I [Rhodospirillum centenum SW]
          Length = 162

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPALAITIEAEPREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P LE   +   E          K++ L +  + +
Sbjct: 118 V--EGPNLEFAAETREELF------YNKEKLLANGDRWE 148


>gi|157148251|ref|YP_001455570.1| electron transport protein HydN [Citrobacter koseri ATCC BAA-895]
 gi|157085456|gb|ABV15134.1| hypothetical protein CKO_04068 [Citrobacter koseri ATCC BAA-895]
          Length = 195

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 72  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 118


>gi|150377582|ref|YP_001314177.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150032129|gb|ABR64244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 198

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|17549196|ref|NP_522536.1| respiratory nitrate reductase oxidoreductase protein [Ralstonia
           solanacearum GMI1000]
 gi|17431448|emb|CAD18126.1| probable respiratory nitrate reductase oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
          Length = 515

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|283138896|gb|ADB12503.1| putative iron-sulfur binding oxidoreductase [Sorangium cellulosum]
          Length = 1039

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           VV +   C  C+   C  VCPV+      + L  +  + CI    C   CP  
Sbjct: 825 VVNQPMLCQHCEKAPCEYVCPVNATVHSPDGLNEMIYNRCIGTRFCSNNCPYK 877


>gi|240102127|ref|YP_002958435.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
 gi|239909680|gb|ACS32571.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
          Length = 167

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
          C  C+   C++VCP    ++  +    I P++CI C +C   CP 
Sbjct: 47 CRHCEKAPCMDVCPAGAIFKDYDGAVIIDPNKCIGCMMCLAVCPF 91


>gi|221635464|ref|YP_002523340.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermomicrobium roseum DSM 5159]
 gi|221157489|gb|ACM06607.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 271

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C    C+E CP       E   + I  D C  C  C   CP   I+ + E
Sbjct: 78  SDVCKHCVRAACLEACPTGAIIRTEFDTVVIQQDVCNGCRACISACPFGVIEINPE 133


>gi|217967483|ref|YP_002352989.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336582|gb|ACK42375.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 266

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++ CI C    C +VCP         F  I  + C  CG+C  +CP  A+
Sbjct: 212 VCSKACIGC--GICEKVCPKGAIKMDGRFPVIDYNLCDGCGICVEKCPTKAL 261



 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 10  ILCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
             C    DCV+ CP D  + GE+ L  I  ++C  CG+C   CP
Sbjct: 140 TGCLGFGDCVKACPFDAIHMGEDGLPKIDMEKCTGCGLCVKACP 183



 Score = 38.4 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 18/71 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           +  E C  C    CV+ CP                      G     +    CI CG+CE
Sbjct: 167 IDMEKCTGC--GLCVKACPRGILTLLPVDIPLLLGCKTELPGPEARRVCSKACIGCGICE 224

Query: 48  PECPVDAIKPD 58
             CP  AIK D
Sbjct: 225 KVCPKGAIKMD 235


>gi|197283947|ref|YP_002149819.1| hydrogenase 2 protein HybA [Proteus mirabilis HI4320]
 gi|227358181|ref|ZP_03842522.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
 gi|194681434|emb|CAR40272.1| hydrogenase-2 4fe-4s subunit [Proteus mirabilis HI4320]
 gi|227161517|gb|EEI46554.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
          Length = 337

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEP 61
            + + C+ C   +CV VCPV    +      +H     C  C  C   CP +  K D + 
Sbjct: 113 FIKKQCMHCVDANCVSVCPVSALTKDPKTGIVHYHADICTGCRYCMVGCPYNIPKYDYDD 172

Query: 62  GLELWLKINSEYATQWPNITTKKESLPS 89
                 K   E   Q       K  LP 
Sbjct: 173 PFGKLYK--CELCNQKGVERLDKGLLPG 198


>gi|21223321|ref|NP_629100.1| nitrate reductase subunit beta NarH3 [Streptomyces coelicolor
           A3(2)]
 gi|20520949|emb|CAD30934.1| nitrate reductase beta chain NarH3 [Streptomyces coelicolor A3(2)]
          Length = 548

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV VCP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 178 CEHCLNPSCVAVCPSGALYKRVEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 228


>gi|28898288|ref|NP_797893.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153837744|ref|ZP_01990411.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|260361862|ref|ZP_05774871.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           K5030]
 gi|260878625|ref|ZP_05890980.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260896157|ref|ZP_05904653.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260899667|ref|ZP_05908062.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28806505|dbj|BAC59777.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748849|gb|EDM59684.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|308086168|gb|EFO35863.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091052|gb|EFO40747.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308109456|gb|EFO46996.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308111412|gb|EFO48952.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           K5030]
 gi|328473703|gb|EGF44538.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           10329]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|113972090|ref|YP_735883.1| twin-arginine translocation pathway signal [Shewanella sp. MR-4]
 gi|113886774|gb|ABI40826.1| Twin-arginine translocation pathway signal [Shewanella sp. MR-4]
          Length = 228

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  +    +++   +C+ C  C   CP  
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVDAWKCVGCQYCIAACPYK 143


>gi|91223723|ref|ZP_01258987.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           12G01]
 gi|254229547|ref|ZP_04922960.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. Ex25]
 gi|262394264|ref|YP_003286118.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. Ex25]
 gi|91191215|gb|EAS77480.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           12G01]
 gi|151937920|gb|EDN56765.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. Ex25]
 gi|262337858|gb|ACY51653.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. Ex25]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|302344053|ref|YP_003808582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301640666|gb|ADK85988.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 384

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 18/85 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------------LAIHPDECIDCGVCEPEC 50
           E CI C    CV  CP       +                       ++CI CG C   C
Sbjct: 193 ERCIAC--GQCVRRCPGLAIRLVKRGPDMPPAPAGSEKPELCAVKDAEKCIGCGDCILTC 250

Query: 51  PVDAIKPDTEPGLELWLKINSEYAT 75
           P  AI+   +  +  +++  + Y  
Sbjct: 251 PQSAIEIAWDAQIPQFMRRMAAYTK 275


>gi|262040646|ref|ZP_06013884.1| electron transporter HydN [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042010|gb|EEW43043.1| electron transporter HydN [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 161

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 17/48 (35%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCP        +   +    CI C  C   CP  A+
Sbjct: 57  ACRQCEDAPCASVCPQGAIQRDNDVWWVDQRRCIGCKSCMVACPYSAM 104


>gi|227831518|ref|YP_002833298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|227457966|gb|ACP36653.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
          Length = 627

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCAFACPVGITDMRGWFINKGEFKSFKCVGIGECVNACPYDNIYFYDIRQWIK 622


>gi|121533858|ref|ZP_01665684.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307369|gb|EAX48285.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 201

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C +  C+ VCP    Y+  + +  +   +C+ CG C   CP  
Sbjct: 58  CNHCANPPCLAVCPTGATYKRPDGIVALDAGKCMGCGYCVVACPYQ 103


>gi|90423913|ref|YP_532283.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB18]
 gi|115502509|sp|Q215H2|NUOI1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|90105927|gb|ABD87964.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB18]
          Length = 162

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K + L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKAKLLANGDRWEREIAK 153


>gi|295132455|ref|YP_003583131.1| iron-sulfur binding oxidoreductase [Zunongwangia profunda SM-A87]
 gi|294980470|gb|ADF50935.1| iron-sulfur binding oxidoreductase [Zunongwangia profunda SM-A87]
          Length = 1021

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     +   
Sbjct: 848 CQHCNHAPCETVCPVAATSHGRQGQNQMIYNRCVGTRYCANNCPYKVRRFNWFNYAQ--- 904

Query: 68  KINSEY 73
             N E+
Sbjct: 905 --NEEF 908


>gi|288817477|ref|YP_003431824.1| cytochrome b/b6 [Hydrogenobacter thermophilus TK-6]
 gi|288786876|dbj|BAI68623.1| cytochrome b/b6 [Hydrogenobacter thermophilus TK-6]
 gi|308751084|gb|ADO44567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 647

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  E C  C+   C   CP +      +E +    ++  +C  CG+C   C V AI
Sbjct: 294 AHIDFEKCTGCE--QCYIDCPYEAITMKDFEDKKKAVLNESKCAGCGICVGSCSVQAI 349


>gi|260683957|ref|YP_003215242.1| indolepyruvate oxidoreductase subunit [Clostridium difficile CD196]
 gi|260687617|ref|YP_003218751.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           R20291]
 gi|260210120|emb|CBA64259.1| indolepyruvate oxidoreductase subunit [Clostridium difficile CD196]
 gi|260213634|emb|CBE05457.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           R20291]
          Length = 609

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 554 VDHDKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 609


>gi|256810211|ref|YP_003127580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793411|gb|ACV24080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 390

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C+ C    CV  CPV+     +N   I   +CI C +C   CP +AI 
Sbjct: 135 VTDACVGC--GVCVPECPVNAISIEDNKAVIDKSKCIYCSICAQTCPWNAIY 184



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E CI C    CVEVCP D      EN + + P  C  CG+C   CPV+A++ D
Sbjct: 202 VEAEKCIYCLK--CVEVCPGDMIKVDNENMIVVPPKSCPACGLCVNICPVNALELD 255


>gi|17944955|gb|AAL48541.1| RE02647p [Drosophila melanogaster]
          Length = 217

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPV AI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVGAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|17864306|ref|NP_524719.1| NADH:ubiquinone reductase 23kD subunit precursor [Drosophila
           melanogaster]
 gi|7300064|gb|AAF55234.1| NADH:ubiquinone reductase 23kD subunit precursor [Drosophila
           melanogaster]
 gi|16768338|gb|AAL28388.1| GM02062p [Drosophila melanogaster]
 gi|220942892|gb|ACL83989.1| ND23-PA [synthetic construct]
 gi|220953000|gb|ACL89043.1| ND23-PA [synthetic construct]
          Length = 217

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
 gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
          Length = 634

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           ++  E C  C  T C   CPV      +  +  I    CI CGVC  +CP
Sbjct: 571 HIDPEKCTGC--TACARACPVSAISGEKRQVHQIDQALCIRCGVCLEKCP 618



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CP     +      I P++C  C  C   CPV AI  +
Sbjct: 557 KACPACAC-KDLISFHIDPEKCTGCTACARACPVSAISGE 595


>gi|331696235|ref|YP_004332474.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950924|gb|AEA24621.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
          Length = 286

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP       E+    +  D C  CG C P CP   I      
Sbjct: 105 SDVCKHCTHAACLDVCPTGSLIRTEHGTVLVQEDICNGCGYCIPACPYGVIDQRPGD 161


>gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
 gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
          Length = 584

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + ENC  C    C + CPV+   +E + +  +  ++CI C  C   C  +AI+
Sbjct: 533 FIEENCTKC--GQCFKACPVEAISWEKKQYPVLDKEKCIKCKTCIDACNFEAIQ 584


>gi|83719374|ref|YP_442384.1| nitrate reductase subunit beta [Burkholderia thailandensis E264]
 gi|167581299|ref|ZP_02374173.1| nitrate reductase, beta subunit [Burkholderia thailandensis TXDOH]
 gi|167619382|ref|ZP_02388013.1| nitrate reductase, beta subunit [Burkholderia thailandensis Bt4]
 gi|83653199|gb|ABC37262.1| nitrate reductase, beta subunit [Burkholderia thailandensis E264]
          Length = 517

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|89896835|ref|YP_520322.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89336283|dbj|BAE85878.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 191

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            Y  + +C  C    CVE CP    +  E+        +CI C  C   CP 
Sbjct: 51  AYHYSGSCNHCAQPKCVEGCPTGAMHVAEDGTVQHDRAKCIGCRYCTWACPY 102


>gi|148262556|ref|YP_001229262.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396056|gb|ABQ24689.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 252

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 18/102 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C    CV  CPV                  + ++   CI CG C P CP  A   D
Sbjct: 79  PCMQCDKPPCVTACPVKGPDGATWKETKGIGTGIVPVNYARCIGCGKCVPACPYQARTMD 138

Query: 59  T-------EPGLELWLKINS-EYATQWPNITTKKESLPSAAK 92
                    P L+ +  + S EY  +WP  + K + + +A K
Sbjct: 139 DGGFHTAGTPELQKYETLPSFEYGKKWPR-SGKNQPIGNARK 179


>gi|226487082|emb|CAX75406.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487084|emb|CAX75407.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487086|emb|CAX75408.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487088|emb|CAX75409.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
          Length = 206

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 104 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMD 94
                         N EY+TQ     +  K++ L +  + +
Sbjct: 162 VEGP----------NFEYSTQTHEELLYNKEKLLQNGDRWE 192


>gi|221234957|ref|YP_002517393.1| NADH dehydrogenase subunit I [Caulobacter crescentus NA1000]
 gi|220964129|gb|ACL95485.1| NADH-quinone oxidoreductase chain I [Caulobacter crescentus NA1000]
          Length = 193

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 91  EERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 148

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQK 99
                         N+E+AT+        K+  L +  + + +  K
Sbjct: 149 VEGP----------NTEFATETREELYYDKERLLDNGDRWERLIAK 184


>gi|162148401|ref|YP_001602862.1| 4Fe-4S ferredoxin, iron-sulfur binding [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543011|ref|YP_002275240.1| putative 4Fe-4S ferredoxin, iron-sulfur-binding [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786978|emb|CAP56563.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530688|gb|ACI50625.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 947

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           T+     C+ C+   C  VCPV         L  +  + C+    C   CP  
Sbjct: 775 TFFQPMLCMHCEQAPCETVCPVGATTHDSEGLNVMVYNRCVGTKFCSNNCPYK 827


>gi|121534846|ref|ZP_01666666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306641|gb|EAX47563.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 118

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y +T+NC  C    C+E CP      G++   ++ + C  CG CE  CP  AI  +T+P 
Sbjct: 39  YFITKNCKKCD--ACLEHCPEGAVSAGKDGNIVNDN-CTGCGECEAVCPNGAIVRETDP- 94

Query: 63  LELWLKINSEY 73
              +  IN E 
Sbjct: 95  ---YRTINREM 102


>gi|313157397|gb|EFR56820.1| ferredoxin [Alistipes sp. HGB5]
          Length = 55

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++C+ C    C+  CPV+    G+    I P+ CIDCG C   CP +AI P+
Sbjct: 1  MAYKITDSCVAC--GTCIGECPVEAISAGD-IYVIDPNTCIDCGTCAGVCPSEAIIPE 55


>gi|161833691|ref|YP_001597887.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Sulcia muelleri GWSS]
 gi|152206181|gb|ABS30491.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Sulcia muelleri GWSS]
          Length = 977

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C  VCPV     G+     +  + CI    C   CP    + +         
Sbjct: 802 CQHCNNAPCETVCPVGATTHGKQGQNMMTYNRCIGTRYCANNCPYKVRRFNWFNYYNK-E 860

Query: 68  KINSEY 73
           +IN  +
Sbjct: 861 QINFNF 866


>gi|126740045|ref|ZP_01755735.1| Cytochrome c heme-binding site:4Fe-4S ferredoxin, iron-sulfur
           binding domain:Nitrate reductase, beta subunit
           [Roseobacter sp. SK209-2-6]
 gi|126718864|gb|EBA15576.1| Cytochrome c heme-binding site:4Fe-4S ferredoxin, iron-sulfur
           binding domain:Nitrate reductase, beta subunit
           [Roseobacter sp. SK209-2-6]
          Length = 507

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|187926837|ref|YP_001893182.1| nitrate reductase, beta subunit [Ralstonia pickettii 12J]
 gi|241665166|ref|YP_002983525.1| nitrate reductase subunit beta [Ralstonia pickettii 12D]
 gi|187728591|gb|ACD29755.1| nitrate reductase, beta subunit [Ralstonia pickettii 12J]
 gi|240867193|gb|ACS64853.1| nitrate reductase, beta subunit [Ralstonia pickettii 12D]
          Length = 514

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E    + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|114049320|ref|YP_739870.1| twin-arginine translocation pathway signal [Shewanella sp. MR-7]
 gi|113890762|gb|ABI44813.1| Twin-arginine translocation pathway signal [Shewanella sp. MR-7]
          Length = 228

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  +    +++   +C+ C  C   CP  
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVDAWKCVGCQYCIAACPYK 143


>gi|293194510|ref|ZP_06610007.1| nitrate reductase, beta subunit [Actinomyces odontolyticus F0309]
 gi|292819705|gb|EFF78722.1| nitrate reductase, beta subunit [Actinomyces odontolyticus F0309]
          Length = 516

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSACPSGAMYKRSEDGIVLVDQDQCRGWRMCVSACPYKKVYF 234


>gi|283836636|ref|ZP_06356377.1| cytochrome c nitrite reductase, Fe-S protein [Citrobacter youngae
           ATCC 29220]
 gi|291067370|gb|EFE05479.1| cytochrome c nitrite reductase, Fe-S protein [Citrobacter youngae
           ATCC 29220]
          Length = 223

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPYR 138


>gi|238786132|ref|ZP_04630086.1| Protein nrfC [Yersinia bercovieri ATCC 43970]
 gi|238712960|gb|EEQ05018.1| Protein nrfC [Yersinia bercovieri ATCC 43970]
          Length = 212

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    Y  +    + ++PD C+ C  C   CP  
Sbjct: 80  SCQHCDKAPCVDVCPTGASYRDKATGIVDVNPDLCVGCQYCIAACPYR 127


>gi|228471147|ref|ZP_04055966.1| conserved domain protein [Porphyromonas uenonis 60-3]
 gi|228307087|gb|EEK16161.1| conserved domain protein [Porphyromonas uenonis 60-3]
          Length = 54

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+T++C+ C    C++ CPV    EG+   +I  D CIDCG C   CP  AI
Sbjct: 1  MAHVITDSCVAC--GTCIDECPVGAISEGD-IYSIDADTCIDCGACAAACPSGAI 52


>gi|218886786|ref|YP_002436107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757740|gb|ACL08639.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 591

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C +  C  +CP        +    I  D C+    C   CP  
Sbjct: 148 IPRRCLHCDNPPCANLCPWGAARREASGTVSIDADICLGGAKCRTVCPWQ 197


>gi|154508445|ref|ZP_02044087.1| hypothetical protein ACTODO_00944 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798079|gb|EDN80499.1| hypothetical protein ACTODO_00944 [Actinomyces odontolyticus ATCC
           17982]
          Length = 516

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSACPSGAMYKRSEDGIVLVDQDQCRGWRMCVSACPYKKVYF 234


>gi|153006946|ref|YP_001381271.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030519|gb|ABS28287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 179

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C H  CV  CP    +  +  +  +   +C  C  C   CP  A     E  ++
Sbjct: 56  SERCNQCSHPSCVSACPTGASHVADGGVVGVARAKCTGCKACIASCPYGARYVHPEGHVD 115

Query: 65  L 65
            
Sbjct: 116 K 116


>gi|7321154|emb|CAB82167.1| nitrate reductase beta-subunit [Erwinia sp. SK-30-7]
          Length = 317

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  D+C    +C   CP   I  +
Sbjct: 161 MAYL-PRLCEHCLNPACAATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 219

Query: 59  TE 60
            +
Sbjct: 220 WK 221


>gi|313672549|ref|YP_004050660.1| electron transport complex, rnfabcdge type, b subunit
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939305|gb|ADR18497.1| electron transport complex, RnfABCDGE type, B subunit
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 260

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI CK   C + CPVD      N   I P++CI+CG C+  CP  AI 
Sbjct: 212 ACIACKL--CQKNCPVDAITVENNLAYIDPNKCINCGKCKEVCPTKAIN 258



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 6   TENCI-LC-KHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           T+ CI  C     CV  C  D  Y G   + I   ++C  CG C   CP   I
Sbjct: 131 TKQCIYGCVGGGSCVTACKFDAIYIGNEGIPIVDAEKCTACGACVKACPRKLI 183


>gi|260768419|ref|ZP_05877353.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio furnissii CIP
           102972]
 gi|260616449|gb|EEX41634.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio furnissii CIP
           102972]
 gi|315180130|gb|ADT87044.1| formate dehydrogenase, iron-sulfur subunit [Vibrio furnissii NCTC
           11218]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|163793195|ref|ZP_02187171.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
 gi|159181841|gb|EDP66353.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
          Length = 159

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 115 V--EGPNFEFATETREELF------YNKEKLLANGDRWEAE 147


>gi|330999804|ref|ZP_08323509.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329573807|gb|EGG55396.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 183

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
            C+ C +  C+ VCP   F +  + + +   ++C  CG+C+  CP DAI
Sbjct: 61  ACMHCSNPTCLAVCPAAAFTKRPDGIVVLDRNKCTSCGLCKEACPYDAI 109


>gi|320353466|ref|YP_004194805.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
 gi|320121968|gb|ADW17514.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
          Length = 807

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ E C  C    C EVCP        + +    ++   C  CG C  EC  DAI  
Sbjct: 593 IIAEKCKAC--GKCAEVCPYGAITVDVKNKKPAVVNSAACAGCGTCSAECRFDAISM 647



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID-- 42
           YV   +C  C   +C +VCPV    E                        I+  EC+   
Sbjct: 251 YVDETSCTAC--GECAKVCPVVRPDEFNMGLGSRKAIYSPFPQAVPSSYLINAKECLGHN 308

Query: 43  ---CGVCEPECPVDAIKPDTEPGL 63
              C  C   C    I        
Sbjct: 309 PAVCSKCVEVCAKGCINFHMSDEE 332


>gi|312372009|gb|EFR20062.1| hypothetical protein AND_20740 [Anopheles darlingi]
          Length = 216

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 114 EERCIACKL--CEAICPAQAITIEAEERSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 171

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 172 VEGP----------NFEFSTETHEELLYNKEKLLTNGDKWESE 204


>gi|291086580|ref|ZP_06356206.2| hydrogenase-2 operon protein HybA [Citrobacter youngae ATCC 29220]
 gi|291067843|gb|EFE05952.1| hydrogenase-2 operon protein HybA [Citrobacter youngae ATCC 29220]
          Length = 289

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 125


>gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 623

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E CI C    C + CP      + ++   I  D CI CG C+  C  DA+  +
Sbjct: 568 HINPEFCIGC--GKCAKNCPAGAISGKIKHPYHIDNDICIKCGACKDNCNFDAVYVE 622


>gi|224370172|ref|YP_002604336.1| HdrL3 [Desulfobacterium autotrophicum HRM2]
 gi|223692889|gb|ACN16172.1| HdrL3 [Desulfobacterium autotrophicum HRM2]
          Length = 1487

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V  ENC  C    CV  CP +        +  I P  C  CGVC  ECP   IK +    
Sbjct: 1415 VDPENCAACL--ICVRSCPYNVPVINAEGVSYIDPALCQGCGVCAAECPAKTIKLNWYED 1472

Query: 63   LE 64
             +
Sbjct: 1473 QQ 1474



 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           YV  E C  C   DC +VCPVD   E    L
Sbjct: 109 YVDLEKCTSC--GDCAKVCPVDFPSEHNQGL 137


>gi|218781106|ref|YP_002432424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
            [Desulfatibacillum alkenivorans AK-01]
 gi|218762490|gb|ACL04956.1| Predicted heterodisulfide reductase/ glutamate synthase fusion
            protein HdrL [Desulfatibacillum alkenivorans AK-01]
          Length = 1482

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
              V  + C  C    CV  CP       E     I P  C  CGVC  ECP  AI+ +  
Sbjct: 1408 AVVDQDKCASCL--ICVRSCPFGVPRIDETGKSIIDPALCQGCGVCASECPAKAIRLNWY 1465

Query: 61   PGLE 64
               +
Sbjct: 1466 EDEQ 1469


>gi|206577946|ref|YP_002236052.1| protein AegA [Klebsiella pneumoniae 342]
 gi|288933050|ref|YP_003437109.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|290511844|ref|ZP_06551212.1| electron transporter HydN [Klebsiella sp. 1_1_55]
 gi|206567004|gb|ACI08780.1| protein AegA [Klebsiella pneumoniae 342]
 gi|288887779|gb|ADC56097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|289775634|gb|EFD83634.1| electron transporter HydN [Klebsiella sp. 1_1_55]
          Length = 161

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 17/48 (35%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCP        +   +    CI C  C   CP  A+
Sbjct: 57  ACRQCEDAPCASVCPQGAIQRDNDVWWVDQRRCIGCKSCMVACPYGAM 104


>gi|163741480|ref|ZP_02148871.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10]
 gi|161385214|gb|EDQ09592.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10]
          Length = 164

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKEKLLSNGERWEAE 152


>gi|156975002|ref|YP_001445909.1| hypothetical protein VIBHAR_02724 [Vibrio harveyi ATCC BAA-1116]
 gi|156526596|gb|ABU71682.1| hypothetical protein VIBHAR_02724 [Vibrio harveyi ATCC BAA-1116]
          Length = 165

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          E+C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 32 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 89


>gi|15668438|ref|NP_247236.1| carbon monoxide dehydrogenase iron sulfur subunit CooF1
          [Methanocaldococcus jannaschii DSM 2661]
 gi|2494449|sp|Q57712|Y264_METJA RecName: Full=Uncharacterized protein MJ0264
 gi|1592278|gb|AAB98251.1| carbon monoxide dehydrogenase, iron sulfur subunit CooF-1 (cooF1)
          [Methanocaldococcus jannaschii DSM 2661]
          Length = 153

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C+  CP +      N + +  D+C+ CG+C   CP  AI+ D
Sbjct: 48 KCMHCDRNPCLYACPENAIERINNKVVVIKDKCVGCGLCALACPFGAIRID 98



 Score = 36.9 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ + C+ C    C   CP          +  +     D  +C+  CP  AI    E
Sbjct: 75  VIKDKCVGC--GLCALACPFGAIRIDGVAIKCNGCYKRDVEICKEVCPTGAINNLEE 129


>gi|117922393|ref|YP_871585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614725|gb|ABK50179.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 228

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  +    +++   +C+ C  C   CP  
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVDAWKCVGCQYCIAACPYK 143


>gi|315925914|ref|ZP_07922119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620735|gb|EFV00711.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 222

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + V E CI C++  C  VCP  C         I  + C+ CG C   CPV  I
Sbjct: 148 FFVGEGCIGCRN--CSVVCPQSCIDSSSIPAVIDQNRCLHCGRCAEACPVGVI 198


>gi|303257427|ref|ZP_07343440.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
 gi|331000028|ref|ZP_08323724.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302859784|gb|EFL82862.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
 gi|329573176|gb|EGG54793.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 306

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C +  CV VCP  C    EN +  + P++CI C  CE  CP D  +   +  
Sbjct: 85  SCFHCTNAGCVTVCPTGCLKYEENGVVSVSPEKCIGCRYCEMACPFDVPRYYGDEP 140


>gi|296166768|ref|ZP_06849191.1| formate dehydrogenase-O, beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897880|gb|EFG77463.1| formate dehydrogenase-O, beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 339

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I      
Sbjct: 158 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIDRREGD 214


>gi|291280069|ref|YP_003496904.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
 gi|290754771|dbj|BAI81148.1| molybdopterin oxidoreductase, 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
          Length = 184

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++T C  VCP    Y+ E  +  +  D+CI C  C   CP DA
Sbjct: 63  CQHCENTPCASVCPTHATYKTEEGVVLVDYDKCILCKACMTACPYDA 109


>gi|269968574|ref|ZP_06182576.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           40B]
 gi|269826785|gb|EEZ81117.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           40B]
          Length = 199

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 100


>gi|254451106|ref|ZP_05064543.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus
           238]
 gi|198265512|gb|EDY89782.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus
           238]
          Length = 649

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C+ VCP          ++I P  C  CG C   CP  AI  D      ++ ++
Sbjct: 282 CLNVCPTGAILSAGEVVSIDPLICAGCGACSAVCPSGAISYDAPTVDHIFRRL 334



 Score = 38.8 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP            L      C+ CG+C   CP  AI
Sbjct: 496 VDTDACTLCL--ACVSLCPSGALGDNPDLPQLRFQESACLQCGLCANICPEKAI 547


>gi|24113116|ref|NP_707626.1| nitrate reductase 1, beta subunit [Shigella flexneri 2a str. 301]
 gi|110805708|ref|YP_689228.1| putative cryptic nitrate reductase 2 subunit beta [Shigella
           flexneri 5 str. 8401]
 gi|24052097|gb|AAN43333.1| nitrate reductase 1, beta subunit [Shigella flexneri 2a str. 301]
 gi|110615256|gb|ABF03923.1| putative cryptic nitrate reductase 2, beta subunit [Shigella
           flexneri 5 str. 8401]
 gi|281601163|gb|ADA74147.1| Nitrate reductase 1, beta subunit [Shigella flexneri 2002017]
 gi|313649015|gb|EFS13452.1| nitrate reductase, beta subunit [Shigella flexneri 2a str. 2457T]
 gi|332757053|gb|EGJ87396.1| nitrate reductase, beta subunit [Shigella flexneri 4343-70]
 gi|332758621|gb|EGJ88940.1| nitrate reductase, beta subunit [Shigella flexneri 2747-71]
 gi|332766940|gb|EGJ97140.1| nitrate reductase, beta subunit [Shigella flexneri 2930-71]
 gi|333004004|gb|EGK23539.1| nitrate reductase, beta subunit [Shigella flexneri K-218]
 gi|333018034|gb|EGK37339.1| nitrate reductase, beta subunit [Shigella flexneri K-304]
          Length = 310

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 184 CEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWK 237


>gi|114561242|ref|YP_748755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332535|gb|ABI69917.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 559

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 4   VVTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V ++ C   KH       C+  CP D      + + I P  C   G C   CP  A+  D
Sbjct: 181 VNSDICAHDKHGLNGCNRCLNFCPADAISSVAHKIEIDPYLCHGAGSCTNACPTGALSYD 240

Query: 59  TE 60
             
Sbjct: 241 LP 242



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           M  + +E C LC    CV  CP     +G     L     +C+ CG+CE  CP + I
Sbjct: 421 MVSINSEKCTLCL--SCVATCPTQALKDGGDAPALKFVEQDCVQCGLCEAACPENVI 475


>gi|332090814|gb|EGI95906.1| 4Fe-4S binding domain protein [Shigella boydii 5216-82]
          Length = 206

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|320095345|ref|ZP_08027032.1| respiratory nitrate reductase, beta subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977724|gb|EFW09380.1| respiratory nitrate reductase, beta subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 516

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSACPSGAMYKRTEDGIVLVDQDACRGWRMCVSACPYKKVYF 234


>gi|293977801|ref|YP_003543231.1| Fe-S-cluster-containing hydrogenase components 1 [Candidatus Sulcia
           muelleri DMIN]
 gi|292667732|gb|ADE35367.1| Fe-S-cluster-containing hydrogenase components 1 [Candidatus Sulcia
           muelleri DMIN]
          Length = 979

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C  VCPV     G+     +  + CI    C   CP    + +         
Sbjct: 804 CQHCNNAPCETVCPVGATTHGKQGQNMMTYNRCIGTRYCANNCPYKVRRFNWFNYYNK-E 862

Query: 68  KINSEY 73
           +IN  +
Sbjct: 863 QINFNF 868


>gi|270263094|ref|ZP_06191364.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Serratia odorifera 4Rx13]
 gi|270042782|gb|EFA15876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Serratia odorifera 4Rx13]
          Length = 205

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   CV+VCPV+     +N + ++   C+ C +C   CP  AI
Sbjct: 51 CRQCEDAPCVQVCPVNAITHQDNAIVLNESLCVSCKLCGIACPFGAI 97


>gi|262203569|ref|YP_003274777.1| nitrate reductase subunit beta [Gordonia bronchialis DSM 43247]
 gi|262086916|gb|ACY22884.1| nitrate reductase, beta subunit [Gordonia bronchialis DSM 43247]
          Length = 554

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D C     C   CP   I  
Sbjct: 186 CEHCLNPSCMASCPSGAIYKRAEDGIVLVDQDRCRGWRQCITGCPYKKIYF 236


>gi|189461429|ref|ZP_03010214.1| hypothetical protein BACCOP_02084 [Bacteroides coprocola DSM 17136]
 gi|189431958|gb|EDV00943.1| hypothetical protein BACCOP_02084 [Bacteroides coprocola DSM 17136]
          Length = 490

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C   CP    +  +      I  D CI CG+C   CP  AI     
Sbjct: 113 YEVSNLCRGCVARSCYMNCPKGAVHFDKKTGQAHIDHDTCISCGICHKSCPYHAIVYIPV 172

Query: 61  PGLEL 65
           P  E 
Sbjct: 173 PCEEA 177



 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + EN +  I   +CI CG C
Sbjct: 145 AHIDHDTCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDENNIEHIDESKCIYCGKC 204

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 205 LNACPFGAIF 214


>gi|157148563|ref|YP_001455882.1| hydrogenase 2 protein HybA [Citrobacter koseri ATCC BAA-895]
 gi|157085768|gb|ABV15446.1| hypothetical protein CKO_04390 [Citrobacter koseri ATCC BAA-895]
          Length = 289

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +  + D C  C  C   CP +  K D 
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYNKDVCTGCRYCMVACPYNVPKYDY 125


>gi|152972444|ref|YP_001337590.1| putative electron transport protein Fe-S center [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238897038|ref|YP_002921784.1| electron transport protein [Klebsiella pneumoniae NTUH-K2044]
 gi|330002346|ref|ZP_08304309.1| electron transport protein HydN [Klebsiella sp. MS 92-3]
 gi|150957293|gb|ABR79323.1| putative electron transport protein Fe-S center [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238549366|dbj|BAH65717.1| electron transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537331|gb|EGF63583.1| electron transport protein HydN [Klebsiella sp. MS 92-3]
          Length = 161

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 17/48 (35%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCP        +   +    CI C  C   CP  A+
Sbjct: 57  ACRQCEDAPCASVCPQGAIQRDNDVWWVDQRRCIGCKSCMVACPYGAM 104


>gi|332297422|ref|YP_004439344.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
 gi|332180525|gb|AEE16213.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
          Length = 463

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C  T CV  CP +          I  + CIDCG C   CP  A
Sbjct: 18 CKGC--TICVTGCPAEAIRVRNGKAVIMEERCIDCGECIRHCPNKA 61


>gi|326624573|gb|EGE30918.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
          str. 3246]
          Length = 162

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 39 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 85


>gi|295394365|ref|ZP_06804589.1| formate dehydrogenase-N, beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972717|gb|EFG48568.1| formate dehydrogenase-N, beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 356

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 158 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQNDVCNGCGTCVAGCPFGVIERRDD 213


>gi|291288299|ref|YP_003505115.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Denitrovibrio acetiphilus DSM 12809]
 gi|290885459|gb|ADD69159.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Denitrovibrio acetiphilus DSM 12809]
          Length = 55

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + ++C  C    C + CPV    EG++   I  D C DCG C   CPVDAI
Sbjct: 1  MAYTINDSCTNC--GVCEDECPVGAISEGDDVRVIDADTCTDCGACAEVCPVDAI 53


>gi|11498785|ref|NP_070014.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649398|gb|AAB90058.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 131

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    CV +CP +  Y  G+  +AI+ ++C+ CG C   CP  A+
Sbjct: 80  EKCVHC--GACVSICPTEAIYINGDKRVAINTEKCVHCGSCVKVCPTRAL 127



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDC 25
           + TE C+ C    CV+VCP   
Sbjct: 107 INTEKCVHC--GSCVKVCPTRA 126


>gi|312959250|ref|ZP_07773768.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens WH6]
 gi|311286510|gb|EFQ65073.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens WH6]
          Length = 320

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 74  AYIREAECIGC--TKCIQACPVDAIVGAAKLMHTVISDECTGCDLCVAPCPVDCIEMRPP 131



 Score = 36.9 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           M  V+++ C  C    CV  CPVDC         
Sbjct: 103 MHTVISDECTGCDL--CVAPCPVDCIEMRPPTSV 134


>gi|307133274|ref|YP_003885290.1| Electron transport protein hydN [Dickeya dadantii 3937]
 gi|306530803|gb|ADN00734.1| Electron transport protein hydN [Dickeya dadantii 3937]
          Length = 177

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCP D   + ++ + +    CI C  C   CP  AI   T P  + 
Sbjct: 57  CHQCENAPCASVCPHDALVQHQDSIQVISSRCIGCKSCVIACPFGAINVVTRPSDDE 113


>gi|254443714|ref|ZP_05057190.1| 4Fe-4S binding domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198258022|gb|EDY82330.1| 4Fe-4S binding domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 1100

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 7/82 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C+   C  VCPV+     E  L A+  + CI    C   CP    + +     +  
Sbjct: 875 ACMQCETAPCETVCPVNATVHDEEGLNAMAYNRCIGTRYCANNCPYKVRRFNFFDYQQ-- 932

Query: 67  LKINSEYATQWPNITTKKESLP 88
                +    +      K    
Sbjct: 933 ----RQLDKLYLGPLAPKGMPE 950


>gi|167570550|ref|ZP_02363424.1| nitrate reductase, beta subunit [Burkholderia oklahomensis C6786]
          Length = 517

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|167563382|ref|ZP_02356298.1| nitrate reductase, beta subunit [Burkholderia oklahomensis EO147]
          Length = 517

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|170724611|ref|YP_001758637.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169809958|gb|ACA84542.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 227

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+ T CV+VCP    Y+  +   +++   +C+ C  C   CP  
Sbjct: 95  SCQQCESTPCVDVCPTGAAYKDPDTGIVSVDEWKCVGCQYCIAACPYQ 142


>gi|118431399|ref|NP_147850.2| nitrate reductase, beta subunit [Aeropyrum pernix K1]
 gi|116062723|dbj|BAA80285.2| nitrate reductase, beta subunit [Aeropyrum pernix K1]
          Length = 464

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C+  CP    Y+   +  + I    C     C   CP   +  + +
Sbjct: 171 CNHCLNPSCLAACPRKSVYKRPEDGIVLIDQTRCRGYRQCVQACPYKKVYYNWK 224


>gi|195328615|ref|XP_002031010.1| GM25751 [Drosophila sechellia]
 gi|194119953|gb|EDW41996.1| GM25751 [Drosophila sechellia]
          Length = 217

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|168183587|ref|ZP_02618251.1| electron transfer flavoprotein, alpha subunit/FixB family
          [Clostridium botulinum Bf]
 gi|237796726|ref|YP_002864278.1| electron transfer flavoprotein subunit alpha/FixB family protein
          [Clostridium botulinum Ba4 str. 657]
 gi|182673296|gb|EDT85257.1| electron transfer flavoprotein, alpha subunit/FixB family
          [Clostridium botulinum Bf]
 gi|229261514|gb|ACQ52547.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum Ba4 str. 657]
          Length = 398

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++  +C  CG C   CP DAI
Sbjct: 5  IIKEKCKAC--GICEKQCPFDAIHVVNGLAEVNE-KCTICGACVEACPFDAI 53


>gi|168179067|ref|ZP_02613731.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum NCTC 2916]
 gi|182670138|gb|EDT82114.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum NCTC 2916]
          Length = 398

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++  +C  CG C   CP DAI
Sbjct: 5  IIKEKCKAC--GICEKQCPFDAIHVVNGLAEVNE-KCTICGACVEACPFDAI 53


>gi|169861584|ref|XP_001837426.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coprinopsis cinerea
           okayama7#130]
 gi|116501447|gb|EAU84342.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 245

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C   CPVDAI
Sbjct: 143 EERCIACKL--CEAICPAQAITIESEARQDGSRKTTKYDIDMTKCIYCGFCAEACPVDAI 200

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N E++T+     +  K++ L +  + +  
Sbjct: 201 VE----------TQNQEFSTETREELLYNKEKLLANGDRAEAE 233


>gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 639

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CP D    + +    I+P++C+ CG C  +C   AI  +
Sbjct: 586 IDPDKCKGC--TLCARTCPADAIIGKVKEVHMINPEKCLKCGACMEKCRFGAIYKE 639


>gi|119720314|ref|YP_920809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525434|gb|ABL78806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 286

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           C+ C    C   CPV          + I  +ECI CG CE  CP  
Sbjct: 95  CMHCATAPCSRACPVGAIKVTPEGAVVISKEECIGCGFCETACPFR 140


>gi|119384970|ref|YP_916026.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222]
 gi|156633536|sp|A1B486|NUOI_PARDP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NADH
           dehydrogenase I subunit I; AltName: Full=NADH-quinone
           oxidoreductase subunit 9; Short=NQO9; AltName:
           Full=NDH-1 subunit 9; AltName: Full=NDH-1 subunit I
 gi|119374737|gb|ABL70330.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222]
          Length = 163

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 119 V--EGPNFEYATETREELF------YDKQKLLANGERWEAE 151


>gi|332296822|ref|YP_004438744.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
 gi|332179925|gb|AEE15613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
          Length = 370

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C+ C    C + C            +I+ D+C+ CG C   CP DA+ P  +   ++ 
Sbjct: 197 EACVGC--GMCRKNCAHGAITIEAKKASINHDKCVGCGRCIGACPKDAVHPGADHSGDV- 253

Query: 67  LKINSEYATQ 76
             +N + A  
Sbjct: 254 --LNCKMAEY 261


>gi|322433771|ref|YP_004215983.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidobacterium sp. MP5ACTX9]
 gi|321161498|gb|ADW67203.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidobacterium sp. MP5ACTX9]
          Length = 529

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C   DC++ CPVD + +      +    D CI C  C   CP    + + E
Sbjct: 105 CNHCLDADCLKGCPVDAYTKDPVSGIVLHSADACIGCSYCVWNCPYSVPQYNPE 158



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 9/59 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECID------CGVCEPECPVDAIKPD 58
           + CI C +  CV  CP            +     C           C   CP  AI+ +
Sbjct: 136 DACIGCSY--CVWNCPYSVPQYNPERGVVGKCDMCKGRLDDGLEPACVNACPEGAIEIE 192


>gi|260426977|ref|ZP_05780956.1| NADH-quinone oxidoreductase subunit i [Citreicella sp. SE45]
 gi|260421469|gb|EEX14720.1| NADH-quinone oxidoreductase subunit i [Citreicella sp. SE45]
          Length = 164

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFSTETREELF------YDKQKLLDNGERWEAE 152


>gi|219856694|ref|YP_002473816.1| hypothetical protein CKR_3351 [Clostridium kluyveri NBRC 12016]
 gi|219570418|dbj|BAH08402.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 57

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ C+ C    C   CPV+C  +G+    I    CIDCG C   CPV A
Sbjct: 1  MAYKITDACMNC--GACASECPVECISQGDTQFLIDDGTCIDCGSCASVCPVGA 52


>gi|149176111|ref|ZP_01854727.1| molybdopterin oxidoreductase, iron sulfur subunit [Planctomyces
           maris DSM 8797]
 gi|148844978|gb|EDL59325.1| molybdopterin oxidoreductase, iron sulfur subunit [Planctomyces
           maris DSM 8797]
          Length = 581

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT  C  C    C++ CPV+ + +      +    D+C  C  C   CP D  K  ++
Sbjct: 133 VTTACHHCLDPGCMQACPVNAYEKDPITGIVRHLDDQCFGCQYCTLACPYDVPKYHSK 190


>gi|149191930|ref|ZP_01870162.1| formate dehydrogenase, iron-sulfur subunit [Vibrio shilonii AK1]
 gi|148834235|gb|EDL51240.1| formate dehydrogenase, iron-sulfur subunit [Vibrio shilonii AK1]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|75676070|ref|YP_318491.1| NADH dehydrogenase subunit I [Nitrobacter winogradskyi Nb-255]
 gi|115502535|sp|Q3SRF2|NUOI_NITWN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|74420940|gb|ABA05139.1| NADH dehydrogenase subunit I [Nitrobacter winogradskyi Nb-255]
          Length = 162

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K + L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKAKLLANGDRWEREIAK 153


>gi|325968156|ref|YP_004244348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707359|gb|ADY00846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
          Length = 1137

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C  C    C++ CP           +   P  C  CG C  ECP DAI  +      + 
Sbjct: 928 KCTKC--GLCIKACPYGAIRGVPGKWIEHIPAACQGCGSCVAECPQDAITLEALSDDAIM 985

Query: 67  LKINSEYAT 75
            +I++  A 
Sbjct: 986 AQIDAALAE 994


>gi|315605301|ref|ZP_07880345.1| respiratory nitrate reductase, beta subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312981|gb|EFU61054.1| respiratory nitrate reductase, beta subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 516

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSACPSGAMYKRTEDGIVLVDQDQCRGWRMCVSACPYKKVYF 234


>gi|300698162|ref|YP_003748823.1| nitrate reductase 1, Fe-S (beta) subunit [Ralstonia solanacearum
           CFBP2957]
 gi|299074886|emb|CBJ54455.1| nitrate reductase 1, Fe-S (beta) subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 517

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|257063419|ref|YP_003143091.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256791072|gb|ACV21742.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 214

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPV 52
            Y V+  C  C +  CV  CP     +      +   P+ CI CG C   CP 
Sbjct: 60  AYHVSAACNHCANPACVANCPTGAMQKDPETGIVQSDPEVCIGCGTCANTCPY 112


>gi|218883496|ref|YP_002427878.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765112|gb|ACL10511.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           kamchatkensis 1221n]
          Length = 407

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V  + CI C    C +VC  D  +     G+    ++  +C  CG+C   CP  AI  
Sbjct: 347 PVVDEKKCIGC--GFCEQVCNYDAVHVEESSGKRVARVNIMKCYGCGLCTSVCPTRAIHF 404



 Score = 34.2 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDT 59
             +   +CI CG CE  C  DA+  + 
Sbjct: 347 PVVDEKKCIGCGFCEQVCNYDAVHVEE 373


>gi|212633603|ref|YP_002310128.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212555087|gb|ACJ27541.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 214

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CPV   ++      +  + D+CI C +C   CP DA + DTE
Sbjct: 78  CNHCSEPVCVSTCPVGAMHKEQDTGLVKTNDDKCIGCNMCAQACPYDAPQMDTE 131


>gi|170755508|ref|YP_001782909.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum B1 str. Okra]
 gi|169120720|gb|ACA44556.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum B1 str. Okra]
 gi|322807596|emb|CBZ05171.1| electron transfer flavoprotein, alpha subunit [Clostridium
          botulinum H04402 065]
          Length = 398

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++  +C  CG C   CP DAI
Sbjct: 5  IIKEKCKAC--GICEKQCPFDAIHVVNGLAEVNE-KCTICGACVEACPFDAI 53


>gi|153938285|ref|YP_001392631.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum F str. Langeland]
 gi|152934181|gb|ABS39679.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum F str. Langeland]
 gi|295320617|gb|ADG00995.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum F str. 230613]
          Length = 398

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++  +C  CG C   CP DAI
Sbjct: 5  IIKEKCKAC--GICEKQCPFDAIHVVNGLAEVNE-KCTICGACVEACPFDAI 53


>gi|126736053|ref|ZP_01751797.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2]
 gi|126714610|gb|EBA11477.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2]
          Length = 167

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 65  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 122

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 123 V--EGPNFEFSTETREEL------YYDKEKLLENGDRWESE 155


>gi|189501296|ref|YP_001960766.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides BS1]
 gi|189496737|gb|ACE05285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides BS1]
          Length = 188

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C  C++  CV  CP    +  +N    I+   C  C  C   CP DA     +   +
Sbjct: 58  SERCQHCENAPCVTYCPTRASHYDDNGTVQINRSRCTGCKACLAACPYDARYVHPQGFAD 117

Query: 65  L 65
            
Sbjct: 118 K 118


>gi|303228707|ref|ZP_07315531.1| 4Fe-4S binding domain protein [Veillonella atypica
          ACS-134-V-Col7a]
 gi|302516618|gb|EFL58536.1| 4Fe-4S binding domain protein [Veillonella atypica
          ACS-134-V-Col7a]
          Length = 271

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       EN        CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRC--GLCVADCPTGLLVMSENGPVTGKGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|301027423|ref|ZP_07190760.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300394931|gb|EFJ78469.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
          Length = 162

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|206901578|ref|YP_002250818.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740681|gb|ACI19739.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 266

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++ CI C    C +VCP         F  I  + C  CG+C  +CP  A+
Sbjct: 212 VCSKACIGC--GICEKVCPKGAIKMDGRFPVIDYNLCDGCGICVEKCPTKAL 261



 Score = 41.5 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 10  ILCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
             C    DCV+VCP D  Y GE+ L  I  ++C  CG+C   CP
Sbjct: 140 TGCLGFGDCVKVCPFDAIYMGEDGLPKIDIEKCTGCGLCVKACP 183



 Score = 37.3 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 18/71 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           +  E C  C    CV+ CP                      G     +    CI CG+CE
Sbjct: 167 IDIEKCTGC--GLCVKACPRGILTLLPINIPLLLGCRSELPGPEARKVCSKACIGCGICE 224

Query: 48  PECPVDAIKPD 58
             CP  AIK D
Sbjct: 225 KVCPKGAIKMD 235


>gi|195570536|ref|XP_002103263.1| GD20325 [Drosophila simulans]
 gi|194199190|gb|EDX12766.1| GD20325 [Drosophila simulans]
          Length = 217

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|22213648|emb|CAC86938.1| sulfur reductase FeS subunit [Acidianus ambivalens]
          Length = 227

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            +   C+ C++  C  VCP       +   + +   +C+ C  C   CP  A    T   
Sbjct: 69  FIPRLCMQCENPPCYYVCPTGATQIVDGGIVVVDEYKCMGCLYCVEACPYGARYFYTYDD 128

Query: 63  LEL 65
           ++ 
Sbjct: 129 IQK 131


>gi|85374152|ref|YP_458214.1| NADH dehydrogenase subunit I [Erythrobacter litoralis HTCC2594]
 gi|123409621|sp|Q2NA74|NUOI_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|84787235|gb|ABC63417.1| NADH dehydrogenase I, I subunit [Erythrobacter litoralis HTCC2594]
          Length = 162

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAQAITIESEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  K +
Sbjct: 118 V--EGPNFEYSTETREEL------LYDKAKLLANGDKWE 148


>gi|332704565|ref|ZP_08424653.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554714|gb|EGJ51758.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 266

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C  C    C EVCP        + L I+ + CI C  C   CP +A      P ++
Sbjct: 191 VNDQCTQC--GLCAEVCPTSAVDSQNSSL-INQEICITCCACIKNCPQNARSMKPSPVMD 247

Query: 65  LWLKINSEY 73
             +++N+ +
Sbjct: 248 ASIRLNTLF 256


>gi|323456536|gb|EGB12403.1| hypothetical protein AURANDRAFT_52238 [Aureococcus anophagefferens]
          Length = 214

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 112 EERCIACKL--CEAVCPAQAITIEAEARADGSRKTTRYDIDMTKCIYCGYCQEACPVDAI 169

Query: 56  KPDTEPGLELWLKINSEYAT--QWPNITTKKESLPSAAKMD 94
                         N E+        I  K++ L +  K +
Sbjct: 170 VEGP----------NYEFTAETHEELIYDKEKLLNNGDKWE 200


>gi|302390736|ref|YP_003826557.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302201364|gb|ADL08934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 383

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +   CI C    CV+VCP       ++ + I    C+ CG C   CP  A+
Sbjct: 195 IKARCIRC--GQCVDVCPHKSLQLVDDSIVIDKTVCVKCGRCARVCPEKAL 243


>gi|229588699|ref|YP_002870818.1| putative electron transpor-like protein [Pseudomonas fluorescens
           SBW25]
 gi|229360565|emb|CAY47422.1| putative electron transpor-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 387

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y+    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+  
Sbjct: 74  AYIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMH 129



 Score = 34.6 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 6/73 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+ + C  C    CV  CPVDC               I  G+   +          +
Sbjct: 103 MHTVIIDECTGCDL--CVAPCPVDCIEMHPATRV----LPIVGGLATNDREHHERGLKRD 156

Query: 61  PGLELWLKINSEY 73
                + + N+  
Sbjct: 157 RARRRFEQRNARL 169


>gi|144898861|emb|CAM75725.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 327

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
            + ++C+ C    CV VCPV    + +    +  + D CI C  C   CP    + + + 
Sbjct: 114 FIKKSCMHCVDPSCVSVCPVSAMTKDKQTGIVGYNADICIGCRYCVASCPFGVPQSEFDT 173

Query: 62  GLEL 65
               
Sbjct: 174 PTPK 177


>gi|116747695|ref|YP_844382.1| hypothetical protein Sfum_0246 [Syntrophobacter fumaroxidans MPOB]
 gi|116696759|gb|ABK15947.1| protein of unknown function DUF362 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 396

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C   DC + CP     +  + +    D CI C  C   CP  A++        L+ +
Sbjct: 335 CKAC--GDCRKYCPAGAITQAGSKIEFDYDRCIRCYCCIEVCPHGALRAVEPYPGRLFNR 392

Query: 69  I 69
           I
Sbjct: 393 I 393


>gi|333005113|gb|EGK24633.1| nitrate reductase, beta subunit [Shigella flexneri VA-6]
          Length = 310

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 184 CEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWK 237


>gi|325955354|ref|YP_004239014.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Weeksella virosa DSM 16922]
 gi|323437972|gb|ADX68436.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Weeksella virosa DSM 16922]
          Length = 1059

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + CI    C   CP    + +     +   
Sbjct: 881 CQHCNHAPCETVCPVAATSHGRQGQNMMAYNRCIGTRYCANNCPYKVRRFNWFTYTQ--- 937

Query: 68  KINSEY 73
             N ++
Sbjct: 938 --NDKF 941



 Score = 34.6 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDA------IKPDTEPGLELWLKINSEYATQWPNITTK 83
              L+I  + C  CG C   C  +                  WL+I+  Y+    N  T+
Sbjct: 780 HFKLSIDMNACTGCGACIIACQAENNVPVVGKDEIRMSRDMYWLRIDRYYSDVTDNTLTQ 839

Query: 84  KESLPSAAKMDGVKQKYEK 102
           K +L     MDG      +
Sbjct: 840 KVALEGP-NMDGKGDGLNE 857


>gi|332162149|ref|YP_004298726.1| Fe-S-cluster-containing hydrogenase components 1 [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606201|emb|CBY27699.1| nrfc protein [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666379|gb|ADZ43023.1| Fe-S-cluster-containing hydrogenase components 1 [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864043|emb|CBX74121.1| protein nrfC [Yersinia enterocolitica W22703]
          Length = 223

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    Y  +    + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDKAPCVDVCPTGASYRDKATGIVDVNPDLCVGCQYCIAACPYR 138


>gi|331231867|ref|XP_003328596.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309307586|gb|EFP84177.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 259

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 157 EERCIACKL--CEAICPAQAITIESETREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 214

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EY+T+     +  K++ L +  +M+  
Sbjct: 215 VESQ----------NTEYSTETREELLYNKEKLLANGDRMESE 247


>gi|262402395|ref|ZP_06078956.1| NrfC protein [Vibrio sp. RC586]
 gi|262351177|gb|EEZ00310.1| NrfC protein [Vibrio sp. RC586]
          Length = 212

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           +C  C++  CV VCP    Y+ E    +   +  C+ CG C   CP       
Sbjct: 82  SCQHCENPPCVYVCPTGAAYKDETTGIVDVHKERCVGCGYCIAACPYQVRFFH 134


>gi|257790767|ref|YP_003181373.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474664|gb|ACV54984.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 199

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C  C    CV  CPV  + + EN +   + D CI C  C   CP  A   D + 
Sbjct: 54  SCNHCDEPACVANCPVQAYTKLENGIVQQNHDLCIGCKTCIEACPYHAPCYDEQE 108


>gi|117619687|ref|YP_855869.1| benzylsuccinate synthase activating enzyme [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561094|gb|ABK38042.1| benzylsuccinate synthase activating enzyme [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 328

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
           + CI C   DCV VCP    Y     G     +  ++ CI C  CE  C   A  I    
Sbjct: 71  DKCINC--GDCVNVCPAGVHYRAEENGSMKHFVDRNKDCIGCRKCEEVCTQHALDIMGKD 128

Query: 60  EPGLELWLKINSEY 73
               EL   I  +Y
Sbjct: 129 VTVSELMEIIMQDY 142


>gi|89894195|ref|YP_517682.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219668592|ref|YP_002459027.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89333643|dbj|BAE83238.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219538852|gb|ACL20591.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 190

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
            Y ++  C  C+H  C E CP    Y+ E    + +  D+CI CG C   CP +
Sbjct: 60  AYWLSLGCNHCEHPKCAENCPTGAMYKREEDGIVLVDQDKCIGCGYCTWSCPYE 113


>gi|114567614|ref|YP_754768.1| ferredoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338549|gb|ABI69397.1| ferredoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 58

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M+Y++T+ CI C    CV+ CPV+   EGE+   I P+ C +CG C   CPV+A  P  +
Sbjct: 1  MSYIITDECISC--GICVDECPVEAISEGEDKFEIDPELCTECGSCADVCPVEAPIPADD 58


>gi|312144423|ref|YP_003995869.1| dihydroorotate dehydrogenase family protein [Halanaerobium sp.
           'sapolanicus']
 gi|311905074|gb|ADQ15515.1| dihydroorotate dehydrogenase family protein [Halanaerobium sp.
           'sapolanicus']
          Length = 363

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ ENC  C+   C+  C  D  Y   +  + I  ++C  CG+C   C   A++ + +
Sbjct: 308 IIIENCTGCRL--CITSCVYDANYLNEDKKIVIDKEKCAACGLCVTRCNFAALELNWD 363


>gi|308271661|emb|CBX28269.1| hypothetical protein N47_G35930 [uncultured Desulfobacterium sp.]
          Length = 988

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + C  C    CV  CP      GE     I P +C  CG C  ECP  AI       
Sbjct: 914 VNPDRCAACL--TCVRTCPYGVPRVGEEGYAVIEPSDCHGCGCCVSECPGKAITLKHFTD 971

Query: 63  LELWLKINSE 72
            +    IN++
Sbjct: 972 DQ----INAK 977



 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           Y+ +  C  C    C +VCPV    E +                      I  + CI CG
Sbjct: 81  YIDSVKCTAC--GQCRQVCPVTAVNEFDCRLDLRKATFIKFPQAVPLSYTIDRNVCIGCG 138

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +CE  C   AI    +P    
Sbjct: 139 MCEKACLAGAISYSDQPRFSE 159


>gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 6    TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
             E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 1217 EERCIACKL--CEAVCPAMAITIESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 1274

Query: 56   KPDTEPGLELWL 67
            K         +L
Sbjct: 1275 KFMDAKTGFFYL 1286


>gi|260072606|gb|ACX30505.1| nitrate reductase beta subunit [uncultured SUP05 cluster bacterium]
 gi|269467966|gb|EEZ79694.1| Nitrate reductase beta subunit [uncultured SUP05 cluster bacterium]
          Length = 516

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C+  CP    Y+ E    + +  D+C    +C   CP   +  + E
Sbjct: 182 CNHCLNPSCLASCPSGAIYKREEDGIVLVDQDKCRGWRMCVTGCPYKKVYYNWE 235


>gi|256826549|ref|YP_003150508.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium
          curtum DSM 15641]
 gi|256582692|gb|ACU93826.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium
          curtum DSM 15641]
          Length = 199

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C    C+ VCPV+        + ++   CI C +C   CP  AI P
Sbjct: 51 CHHCAGAPCLAVCPVNAITRENGSIQVNEQTCIGCKLCGIVCPFGAIHP 99


>gi|255264062|ref|ZP_05343404.1| NADH-quinone oxidoreductase, i subunit [Thalassiobium sp. R2A62]
 gi|255106397|gb|EET49071.1| NADH-quinone oxidoreductase, i subunit [Thalassiobium sp. R2A62]
          Length = 164

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFSTETREEL------YYDKDKLLENGDRWEAE 152


>gi|225637765|gb|ACN97369.1| NarH [Halomonas elongata DSM 2581]
          Length = 334

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 169 CEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYNWK 222


>gi|146309813|ref|YP_001174887.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Enterobacter sp. 638]
 gi|145316689|gb|ABP58836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Enterobacter
           sp. 638]
          Length = 153

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       +  +A+    CI C  C   CP  A+
Sbjct: 58  CHHCEDAPCGNVCPTGAIRREQGRIAVDQQRCIGCKSCVIACPFGAM 104


>gi|94264895|ref|ZP_01288669.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454665|gb|EAT04933.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 226

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C +  C   CP    +  +        P  C+ C  C   CP DAI         ++
Sbjct: 53  CNHCDNAPCTRACPTKAMHKVKENGLTLHEPRRCVGCRACMVSCPYDAITFVRYEPHAMF 112

Query: 67  LKINSEY 73
            + N E 
Sbjct: 113 KE-NQEL 118


>gi|15803044|ref|NP_289074.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
          O157:H7 EDL933]
 gi|12516915|gb|AAG57631.1|AE005481_7 putative dimethyl sulfoxide reductase subunit B [Escherichia coli
          O157:H7 str. EDL933]
          Length = 145

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++ +C  C    C + CP    ++  G+  + ++ D+C+ CG C   CP  A + + 
Sbjct: 7  AYTLSVSCNHCADPICTKNCPTMAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMNE 66


>gi|89893786|ref|YP_517273.1| hypothetical protein DSY1040 [Desulfitobacterium hafniense Y51]
 gi|89333234|dbj|BAE82829.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 422

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + CI C    C +VCPV         EG+    +  + C+ CG+C   CP   I
Sbjct: 291 IAQECIGC--GKCEKVCPVLAISMSTNAEGKKIAQVDHEVCLGCGICVRSCPKKVI 344


>gi|312621527|ref|YP_004023140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201994|gb|ADQ45321.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 373

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + T  C+ C    CV+ C        E     I  ++C+ CG C   C   A     +
Sbjct: 189 PVIKTSKCVGC--GMCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFGAATVRWD 246

Query: 61  PGLELWLKINSEY 73
               +  +  +EY
Sbjct: 247 EAASIASEKIAEY 259


>gi|253581030|ref|ZP_04858291.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847693|gb|EES75662.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 57

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+++ C+ C    C   CP +   +G+    I  D C+DCG C   CP +AI P
Sbjct: 1  MAYVISDECVSC--GTCESECPAEAISQGDEHYVIDADACLDCGTCADACPTEAIHP 55


>gi|170760160|ref|YP_001788602.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A3 str. Loch Maree]
 gi|169407149|gb|ACA55560.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A3 str. Loch Maree]
          Length = 398

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++  +C  CG C   CP DAI
Sbjct: 5  IIKEKCKAC--GICEKQCPFDAIHVVNGLAEVNE-KCTICGACVEACPFDAI 53


>gi|153954855|ref|YP_001395620.1| transcription regulator [Clostridium kluyveri DSM 555]
 gi|219855312|ref|YP_002472434.1| hypothetical protein CKR_1969 [Clostridium kluyveri NBRC 12016]
 gi|146347713|gb|EDK34249.1| Predicted transcriptional regulator containing a ferredoxin
          domain [Clostridium kluyveri DSM 555]
 gi|219569036|dbj|BAH07020.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 639

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 3  YVVTENCILCKHTDCVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y+  E C+ C    C+  CPV         EG+N + I+ ++CI CG C   C   A   
Sbjct: 9  YLKEEKCVGCNK--CIVNCPVIGANIAYIVEGKNKVKINGEKCIHCGECIKVCDHFARDF 66

Query: 58 DTEPGL 63
          + +   
Sbjct: 67 NDDTED 72


>gi|39995889|ref|NP_951840.1| hydrogenase 2 protein HybA [Geobacter sulfurreducens PCA]
 gi|39982653|gb|AAR34113.1| nickel-dependent hydrogenase, iron-sulfur cluster-binding protein
           [Geobacter sulfurreducens PCA]
 gi|307634747|gb|ADI83626.2| periplasmically oriented, membrane-bound [NiFe]-hydrogenase
           iron-sulfur cluster-binding subunit [Geobacter
           sulfurreducens KN400]
          Length = 305

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           V  +C+ C    CV  CPV    +      +  + + CI C  C+  CP +  +   +
Sbjct: 110 VKHSCMHCTKPGCVSACPVKAMTKDPVTGVVAYNKNACIGCRYCQVACPYNIPRFQWD 167


>gi|325957922|ref|YP_004289388.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329354|gb|ADZ08416.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 658

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C  C+   C+++CP       +    I+   C  CG C   CP  A+      
Sbjct: 585 ALVDEDVCGGCE--VCIDLCPYGAVERIDEKAHINVALCKGCGTCVGACPSGALDQQHFK 642

Query: 62  GLELWLKINSEY 73
             +++ +I +  
Sbjct: 643 TSQIFAQIEAAM 654



 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLA-----IHPDECIDCG 44
           Y+    C  C    C EVCP             V   Y            I  D CI+C 
Sbjct: 249 YIDESVCTGC--GSCTEVCPIEIPNYFDEGVGMVKATYIPFPQAVPLCATIDKDYCIECK 306

Query: 45  VCEPECPVDAIKPDTEPG 62
           +C+  C   AIK D EP 
Sbjct: 307 LCDQVCGNGAIKHDQEPE 324


>gi|323508175|emb|CBQ68046.1| probable NADH-ubiquinone oxidoreductase 23 kDa subunit precursor
           [Sporisorium reilianum]
          Length = 265

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 163 EERCIACKL--CEAICPAQAITIESEPREDGARRTTRYDIDMTKCIYCGFCQEACPVDAI 220

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EY+T+     +  K++ L +  + +  
Sbjct: 221 VE----------TQNTEYSTETREELLYNKEKLLANGDRAEAE 253


>gi|261823786|ref|YP_003261892.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium wasabiae WPP163]
 gi|261607799|gb|ACX90285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium wasabiae WPP163]
          Length = 169

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCP D      + + +    CI C  C   CP  AI   T+   + 
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAINVVTKASNDE 113


>gi|289812555|ref|ZP_06543184.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 198

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 63  CEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWK 116


>gi|157377178|ref|YP_001475778.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319552|gb|ABV38650.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 190

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  I  D+C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVTIKEDKCVGCMYCVAACPYKVRFVNPE 112


>gi|77918293|ref|YP_356108.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77544376|gb|ABA87938.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 57

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          T+ +TE+CI C    C +VCPVD   E      +    C DCG C+  CPVDAIK D
Sbjct: 3  THYITEDCINC--GACADVCPVDAISEKGELHIVDQPTCTDCGACDEVCPVDAIKWD 57


>gi|71909583|ref|YP_287170.1| hydrogenase 2 protein HybA [Dechloromonas aromatica RCB]
 gi|71849204|gb|AAZ48700.1| Twin-arginine translocation pathway signal [Dechloromonas aromatica
           RCB]
          Length = 351

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV  CPV    +  E  +    PD CI C  C   CP    K   +     
Sbjct: 114 SCMHCADPSCVSACPVSAMTKNLETGIVGYDPDACIGCRYCVAACPFGIPKYQYDSPTGK 173


>gi|253580939|ref|ZP_04858201.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847781|gb|EES75749.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 374

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C+   C + C  D          I  D+C  CG C   C  DA+        
Sbjct: 192 VNEELCRGCR--RCAKECGSDAITYPNKKAVIDYDKCKGCGRCIGACGFDAVYNPNSSAN 249

Query: 64  ELWLKINSEYAT 75
           EL  +  +EYA 
Sbjct: 250 ELLDRKMAEYAQ 261


>gi|166032145|ref|ZP_02234974.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC
           27755]
 gi|166027868|gb|EDR46625.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC
           27755]
          Length = 249

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y V++ CI C    C   CP       +       ++C  C  C   CPV+AI  
Sbjct: 176 AYHVSDECIGC--GLCERKCPAKAIEIQDGKPVWIKEDCYLCMACLNYCPVEAIDY 229


>gi|154491084|ref|ZP_02031025.1| hypothetical protein PARMER_01005 [Parabacteroides merdae ATCC
           43184]
 gi|154088832|gb|EDN87876.1| hypothetical protein PARMER_01005 [Parabacteroides merdae ATCC
           43184]
          Length = 262

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                + C  C++  C++VCPV      ++ +   P  CI C  C  ECP  A   DT  
Sbjct: 187 PVTDEDLCTQCEY--CIDVCPVSAISIVDDRIFSDPATCIKCCACVKECPEGARTFDTPY 244

Query: 62  GLE 64
              
Sbjct: 245 TAM 247


>gi|78357433|ref|YP_388882.1| dissimilatory sulfite reductase subunit alpha and beta-like protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219838|gb|ABB39187.1| Dissimilatory sulfite reductase (desulfoviridin) alpha and beta
           subunits-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 215

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C  C    C   CP D    G    A  P  CIDCG C   CP  A+  
Sbjct: 95  DVCTGC--GRCAAACPDDAIDMGSGVPAFDPLRCIDCGQCLLRCPEKALSC 143


>gi|114567339|ref|YP_754493.1| formate dehydrogenase subunit beta [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338274|gb|ABI69122.1| formate dehydrogenase beta subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 270

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C++ C  +  Y+ E     I  D+CI CG C   CP    K D 
Sbjct: 74  CFHCGDPACMKACSSNAIYKTETGYTLIDKDKCIGCGYCAANCPWGVPKIDE 125


>gi|309389880|gb|ADO77760.1| Fe-S cluster domain protein [Halanaerobium praevalens DSM 2228]
          Length = 445

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E C  C  T+CV+ CP       +    I  D CIDC  C   C   A    T+   +
Sbjct: 11 EEKCEGC--TNCVKGCPTKAIRVHQGKAWIKEDLCIDCAECIRACEYHAKYTQTDHLSQ 67


>gi|310816705|ref|YP_003964669.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25]
 gi|308755440|gb|ADO43369.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25]
          Length = 164

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  K +  
Sbjct: 120 V--EGPNFEFATESREELF------YDKDKLLANGDKWEAE 152


>gi|292492628|ref|YP_003528067.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Nitrosococcus halophilus Nc4]
 gi|291581223|gb|ADE15680.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Nitrosococcus halophilus Nc4]
          Length = 992

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 12/86 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           TY     C+ C++  C  VCP          L +   + CI    C   CP    + +  
Sbjct: 816 TYFQPVPCMHCENAPCELVCPTAATVHDSEGLNLQVYNRCIGTRFCSNNCPYKVRRFN-- 873

Query: 61  PGLELWLKINSEYATQWPNITTKKES 86
                +L+    YA   P +  ++  
Sbjct: 874 -----FLQ----YAKDTPGLAAQRNP 890


>gi|268324149|emb|CBH37737.1| hypothetical protein, containing 4Fe-4S binding domains
          [uncultured archaeon]
          Length = 103

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V  E C+ C    C  VC        +    +  + CI C  C   CP  AI+
Sbjct: 12 AFVNEELCVGC--GKCTGVCWTGAIGIVDKKAVVDFNRCICCTACVRACPKGAIQ 64


>gi|257792649|ref|YP_003183255.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488937|ref|ZP_07947467.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831018|ref|ZP_08164342.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|257476546|gb|ACV56866.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912011|gb|EFV33590.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486939|gb|EGC89385.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 253

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E+C  C    C+  CPV   Y  E      +   +CI CG+C   CP +  + D+E
Sbjct: 150 EHCKQCADPACMNYCPVHAIYADEESGARTVDTKKCIGCGMCSQACPWNMPRVDSE 205



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPG 62
           V T+ CI C    C + CP +              +CI CG C  +CP  AI   D E  
Sbjct: 180 VDTKKCIGC--GMCSQACPWNMPRVDSETGV--STKCISCGRCAEQCPNGAIKFIDWEDI 235

Query: 63  LELWLK 68
            +  + 
Sbjct: 236 AQKVID 241


>gi|212636841|ref|YP_002313366.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212558325|gb|ACJ30779.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 227

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV+VCP    Y  +    +A++ D C+ C  C   CP  
Sbjct: 95  SCQHCEAAPCVKVCPTGAAYIDKETGIVAVNEDRCVGCQYCIAACPYQ 142


>gi|110634791|ref|YP_674999.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110285775|gb|ABG63834.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 198

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|38605511|sp|Q9S1G9|SERB_THASE RecName: Full=Selenate reductase subunit beta; AltName:
           Full=Selenate reductase iron-sulfur subunit
 gi|5764053|emb|CAB53373.1| selenate reductase B [Thauera selenatis]
          Length = 327

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+ E    + +    C     C   CP   +  
Sbjct: 133 CNHCSNPACLAACPTKAIYKREEDGLVVVDQSRCKGYRYCVKACPYGKMYF 183


>gi|85717021|ref|ZP_01047983.1| NADH dehydrogenase subunit I [Nitrobacter sp. Nb-311A]
 gi|85696145|gb|EAQ34041.1| NADH dehydrogenase subunit I [Nitrobacter sp. Nb-311A]
          Length = 162

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K + L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKDKLLANGDRWEREIAK 153


>gi|302343580|ref|YP_003808109.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
 gi|301640193|gb|ADK85515.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
          Length = 1011

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            VV E C  C    CV  CP+   +   +    I P++C+ CG+C  ECP  AI+      
Sbjct: 939  VVGEMCAACL--VCVRACPIGVPFINADGYSQIDPEKCLGCGICAAECPAKAIQLQGYDD 996

Query: 63   LELW 66
             ++ 
Sbjct: 997  DQIM 1000


>gi|261379385|ref|ZP_05983958.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           subflava NJ9703]
 gi|284797832|gb|EFC53179.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           subflava NJ9703]
          Length = 283

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I  D  
Sbjct: 74  ALIDEAVCIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVAPCPVDCI--DMV 129

Query: 61  PGLELWLKINSEYATQWPN 79
           P  + +L     ++T    
Sbjct: 130 PVSQPFLPSARRFSTSAEP 148



 Score = 34.2 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+++ C  C    CV  CPVDC   
Sbjct: 103 MHTVISDECTGC--GLCVAPCPVDCIDM 128


>gi|225405642|ref|ZP_03760831.1| hypothetical protein CLOSTASPAR_04863 [Clostridium asparagiforme
          DSM 15981]
 gi|225042836|gb|EEG53082.1| hypothetical protein CLOSTASPAR_04863 [Clostridium asparagiforme
          DSM 15981]
          Length = 471

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C +  C++ CP +         +I+   CIDCG C   CP  A  
Sbjct: 15 CKGCIN--CIKRCPTEAIRVRGGKASINNKFCIDCGECIRVCPHHAKH 60


>gi|212223426|ref|YP_002306662.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
 gi|212008383|gb|ACJ15765.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
          Length = 165

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
          NC  C+   C+EVCPV+   + ++   +  P +CI C +C   CP    K D 
Sbjct: 45 NCRHCEKAPCMEVCPVNALSKDDDGAVVLDPLKCIGCLMCGLACPFGIPKIDE 97


>gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
            YV+  E C  C    CV+ CP      G++ +  I  ++C  CG C   CP  
Sbjct: 561 AYVIDPEQCRAC--QLCVKKCPAGAIDGGKDLISVIDQEKCTKCGTCFEVCPPR 612


>gi|50123379|ref|YP_052546.1| electron transport protein [Pectobacterium atrosepticum SCRI1043]
 gi|49613905|emb|CAG77358.1| electron transport protein [Pectobacterium atrosepticum SCRI1043]
          Length = 173

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCP D      + + +    CI C  C   CP  AI   T+   + 
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAINVVTKASNDE 113


>gi|327484141|gb|AEA78548.1| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio cholerae
           LMA3894-4]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF +  +  +  + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTADGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|325264637|ref|ZP_08131367.1| conserved domain protein [Clostridium sp. D5]
 gi|324030299|gb|EGB91584.1| conserved domain protein [Clostridium sp. D5]
          Length = 56

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + + + C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI+ +
Sbjct: 1  MAHFINDECVSC--GSCEGECPVGAIAEGDGKYVIDADACVDCGACEGACPTGAIQAE 56


>gi|307297327|ref|ZP_07577133.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916587|gb|EFN46969.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 291

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++++CI C    C + C  D    G    ++ P  C  CG+C   CP DAI        +
Sbjct: 63  ISDSCISC--GICEKYCRFDAVIRGGP-YSVDPYACEGCGMCVAVCPADAITLKDNKSGD 119

Query: 65  LWL 67
            +L
Sbjct: 120 YFL 122


>gi|258405352|ref|YP_003198094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797579|gb|ACV68516.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 189

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  C+ VCPV  +Y+ E    +    D+CI CG C   CP  A      P    
Sbjct: 58  ACNHCENPTCLNVCPVKAYYKREEDGIVVHEQDKCIGCGNCIRSCPYGA------PRYNE 111

Query: 66  WLKINSEYATQWPNITTKKES 86
            LK   + +  W  I    + 
Sbjct: 112 VLKKAEKCSFCWQRIDDGLKP 132


>gi|218263700|ref|ZP_03477727.1| hypothetical protein PRABACTJOHN_03417 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222557|gb|EEC95207.1| hypothetical protein PRABACTJOHN_03417 [Parabacteroides johnsonii
           DSM 18315]
          Length = 268

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ T  CI C    C+++CP+  F   +  L      CI C +C   CP  +I       
Sbjct: 185 FLNTSTCINC--GKCIKICPMHIFALKDTVLPTDEKNCIQCRLCADNCPTSSIYIHESFL 242

Query: 63  LELWLKINSEYATQWPNITTKKE 85
               + +   ++ +  N    ++
Sbjct: 243 NGFRIALRESFSDKLQNSYNNED 265


>gi|7321317|emb|CAB82186.1| nitrate reductase beta-subunit [Shewanella sp. Bok-1-30-2]
          Length = 328

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 169 CEHCINPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWK 222


>gi|332296275|ref|YP_004438198.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermodesulfobium narugense DSM 14796]
 gi|332179378|gb|AEE15067.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermodesulfobium narugense DSM 14796]
          Length = 576

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E C  CK   C+ V CP   F +    + I  D C  C +C   C   AIK 
Sbjct: 523 VDEEKCKGCK--ICLNVACPAMSFNKDIKKVKIRADLCYGCRLCVDACLHGAIKQ 575


>gi|312143185|ref|YP_003994631.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium sp. 'sapolanicus']
 gi|311903836|gb|ADQ14277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium sp. 'sapolanicus']
          Length = 56

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+ ++CILC    C   CPVDC  EG+    I  DECIDC  C   CPVDAI
Sbjct: 1  MAHVINDDCILC--GACAPECPVDCISEGDTKYEIDADECIDCAACVSVCPVDAI 53


>gi|238021504|ref|ZP_04601930.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147]
 gi|237868484|gb|EEP69490.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147]
          Length = 324

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I  
Sbjct: 72  AWIDEAVCIGC--TACIRACPVDAIMGASKQMHTVLADECTGCGLCVAPCPVDCIYM 126



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC Y   
Sbjct: 101 MHTVLADECTGC--GLCVAPCPVDCIYMRP 128


>gi|224542036|ref|ZP_03682575.1| hypothetical protein CATMIT_01209 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525093|gb|EEF94198.1| hypothetical protein CATMIT_01209 [Catenibacterium mitsuokai DSM
           15897]
          Length = 379

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C+   C + C  D          I+ D C  CG C   C  DAI+       E+ 
Sbjct: 200 DLCRGCR--RCAKECGSDAITYENGKAVINQDICKGCGRCIGACAFDAIENQNWNANEIL 257

Query: 67  LKINSEYAT 75
            +  +EY+ 
Sbjct: 258 GRKMAEYSQ 266


>gi|219851494|ref|YP_002465926.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219545753|gb|ACL16203.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 203

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C    C++VCP +  Y   +   +AIH + CIDC VC   CP   I+      ++L
Sbjct: 58  RCRHCDPAPCMQVCPTEALYRDLSTGSVAIHYNRCIDCAVCAMACPFGVIRFQRVRQVDL 117

Query: 66  WLKINSE 72
              +N++
Sbjct: 118 PRDVNAK 124


>gi|157376057|ref|YP_001474657.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157318431|gb|ABV37529.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 211

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y  +  C  C    CV+ CPV   ++   +  + +  D CI C  C   CP DA + D
Sbjct: 63  AYYTSIGCNHCSEPACVKACPVGAMHKRKQDGLVHVASDLCIGCESCARACPYDAPQID 121


>gi|145355484|ref|XP_001421991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582230|gb|ABP00285.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 167

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 65  EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 122

Query: 56  KPDTEPGLELWLKINSEYAT--QWPNITTKKESLPSAAKMDGV 96
                         N EYAT      +  K++ L +  + +  
Sbjct: 123 VEGP----------NFEYATFSHEELLYDKEKLLSNGDRWEKE 155


>gi|119872139|ref|YP_930146.1| putative ATPase RIL [Pyrobaculum islandicum DSM 4184]
 gi|119673547|gb|ABL87803.1| ABC transporter related [Pyrobaculum islandicum DSM 4184]
          Length = 590

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPVD------CFYEGENFLAIHPDECIDCGVCEPECPVD 53
            V  + C    C   +CV+ CPV+         E      I    CI CG+C  +CP  
Sbjct: 5  AVVDRDACQPRKC-GQECVKYCPVNKSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFQ 63

Query: 54 AI 55
          AI
Sbjct: 64 AI 65


>gi|89895375|ref|YP_518862.1| iron-sulfur protein [Desulfitobacterium hafniense Y51]
 gi|89334823|dbj|BAE84418.1| iron-sulfur protein [Desulfitobacterium hafniense Y51]
          Length = 162

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   CV+VCP    Y+ E  + ++ + CI C +C   CP  +I  
Sbjct: 63  CRQCEDAPCVKVCPNGSLYQEEGLVKLNRETCIGCKLCARACPFGSITM 111


>gi|305667525|ref|YP_003863812.1| pyridine nucleotide-disulphide oxidoreductase domain-containing
          protein [Maribacter sp. HTCC2170]
 gi|88709575|gb|EAR01808.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
          [Maribacter sp. HTCC2170]
          Length = 410

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           Y+    CI      C+  CP       EN +   I+   CI  G C   CPV+AI
Sbjct: 23 PYIDLNECIG--SGACITACPEKDILGIENGIATVINTSNCIGHGACFHSCPVEAI 76


>gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 579

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           +CI C    C +VCP             +   +C+ CG C   CP ++I
Sbjct: 524 SCIGC--GQCAKVCPAKAISGEVRKPHVVDALKCVGCGQCMDICPTNSI 570


>gi|282849733|ref|ZP_06259117.1| 4Fe-4S binding domain protein [Veillonella parvula ATCC 17745]
 gi|294794400|ref|ZP_06759536.1| nitroreductase family protein [Veillonella sp. 3_1_44]
 gi|282580670|gb|EFB86069.1| 4Fe-4S binding domain protein [Veillonella parvula ATCC 17745]
 gi|294454730|gb|EFG23103.1| nitroreductase family protein [Veillonella sp. 3_1_44]
          Length = 271

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       +         CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRC--GLCVADCPTGLLVMSDAGPVTGRGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|241759531|ref|ZP_04757634.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114]
 gi|241320088|gb|EER56449.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114]
          Length = 283

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I  D  
Sbjct: 74  ALIDEAICIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMV 129

Query: 61  PGLELWLKINSEYATQWPN 79
           P  + +L     ++T    
Sbjct: 130 PVSQSFLPSARRFSTSAEP 148



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+++ C  C    CV  CPVDC   
Sbjct: 103 MHTVISDECTGC--GLCVTPCPVDCIDM 128


>gi|212224166|ref|YP_002307402.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermococcus
           onnurineus NA1]
 gi|212009123|gb|ACJ16505.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermococcus
           onnurineus NA1]
          Length = 212

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           + V   C  C+   C+E CP       +    + + ++CI C +C   CP    K + E 
Sbjct: 63  FNVPMRCQHCEDAPCMEACPTGAISRTKEGFVVLNANKCIGCLMCVMACPFGHPKFEPEY 122

Query: 62  G 62
            
Sbjct: 123 K 123


>gi|164686429|ref|ZP_02210459.1| hypothetical protein CLOBAR_02867 [Clostridium bartlettii DSM
           16795]
 gi|164602031|gb|EDQ95496.1| hypothetical protein CLOBAR_02867 [Clostridium bartlettii DSM
           16795]
          Length = 594

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C+ CK   C +  CP     +     +I  ++C+ C VC   CP +AI  + +
Sbjct: 539 VDEEKCVGCKK--CTKTGCPAISVDKEAKKASIDRNQCLGCEVCLQVCPKNAIVKEEK 594


>gi|119988|sp|P00198|FER_CLOAC RecName: Full=Ferredoxin
 gi|157831050|pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin
          From Clostridium Acidurici At 1.84 Angstroms Resolution
 gi|157834957|pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
          Length = 55

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV+ E CI C    C   CPV+    G++   I  D CIDCG C   CPVDA
Sbjct: 1  AYVINEACISC--GACEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPVDA 51


>gi|94311013|ref|YP_584223.1| respiratory nitrate reductase subunit beta [Cupriavidus
           metallidurans CH34]
 gi|93354865|gb|ABF08954.1| nitrate reductase 1, beta (Fe-S) subunit [Cupriavidus metallidurans
           CH34]
          Length = 517

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 613

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           V+ + C  C    C   CP       +     I+ + C  CG+C   C  +AI
Sbjct: 549 VLADACKGC--GRCSRECPTGAITGEKKMPFTINQEMCARCGLCISVCKFNAI 599


>gi|226950711|ref|YP_002805802.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A2 str. Kyoto]
 gi|226842543|gb|ACO85209.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A2 str. Kyoto]
          Length = 398

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++  +C  CG C   CP DAI
Sbjct: 5  IIKEKCKAC--GICEKQCPFDAIHVVNGLAEVNE-KCTICGACVEACPFDAI 53


>gi|224368764|ref|YP_002602925.1| iron-sulfur binding hydrogenase [Desulfobacterium autotrophicum
          HRM2]
 gi|223691480|gb|ACN14763.1| iron-sulfur binding hydrogenase [Desulfobacterium autotrophicum
          HRM2]
          Length = 548

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C    CV+VCP       +    +  D CI  G C   CP + I
Sbjct: 18 CNGC--GACVKVCPTKAIRIKDGKSLLLVDNCIGGGECVTVCPQECI 62


>gi|254475969|ref|ZP_05089355.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11]
 gi|214030212|gb|EEB71047.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11]
          Length = 164

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKEKLLSNGERWEAE 152


>gi|187776798|ref|ZP_02993271.1| hypothetical protein CLOSPO_00314 [Clostridium sporogenes ATCC
          15579]
 gi|187775457|gb|EDU39259.1| hypothetical protein CLOSPO_00314 [Clostridium sporogenes ATCC
          15579]
          Length = 398

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++  +C  CG C   CP DAI
Sbjct: 5  IIKEKCKAC--GICEKQCPFDAIHVINGLAEVNE-KCTICGACVEACPFDAI 53


>gi|171058237|ref|YP_001790586.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170775682|gb|ACB33821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 438

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
             +    CI      C + CP D           ++   CI  G C+  CP DAI
Sbjct: 49  PVIDPARCIG--SGSCTKACPEDALGMVGGKAVLVNASACIGHGACQAACPFDAI 101


>gi|167752987|ref|ZP_02425114.1| hypothetical protein ALIPUT_01250 [Alistipes putredinis DSM 17216]
 gi|167659301|gb|EDS03431.1| hypothetical protein ALIPUT_01250 [Alistipes putredinis DSM 17216]
          Length = 271

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP +   +       I+ D CI CG+C   CP  AI     P
Sbjct: 108 YEITNLCKGCVARACATNCPKNAIEFNRAGKAVINHDLCISCGICHSNCPYHAIVYMPVP 167

Query: 62  GLEL 65
             E 
Sbjct: 168 CEEA 171



 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E  +  I   +CI CG C   CP
Sbjct: 144 DLCISCGICHSNCPYHAIVYMPVPCEEACPVKAITKDERGVEHIDESKCIYCGKCINSCP 203

Query: 52  VDAIK 56
             AI 
Sbjct: 204 FGAIF 208


>gi|149908810|ref|ZP_01897470.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp.
           PE36]
 gi|149808084|gb|EDM68025.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp.
           PE36]
          Length = 566

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  T CV+ CP        + + I+P  C   G C   CP +AI        +
Sbjct: 194 GC--TRCVDACPAGALSSNGHAIEINPFLCQGVGTCATACPTEAITYALPEPEK 245



 Score = 40.7 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           T++C LC    CV VCP    +   G   L     +C+ CG+CE  CP  
Sbjct: 431 TDDCTLCMG--CVAVCPTRALHAVGGRPGLQFKEQDCVQCGLCEKACPEQ 478


>gi|148381229|ref|YP_001255770.1| electron transfer flavoprotein alpha-subunit [Clostridium
          botulinum A str. ATCC 3502]
 gi|153933291|ref|YP_001385604.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A str. ATCC 19397]
 gi|153936895|ref|YP_001389010.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A str. Hall]
 gi|148290713|emb|CAL84844.1| electron transfer flavoprotein alpha-subunit [Clostridium
          botulinum A str. ATCC 3502]
 gi|152929335|gb|ABS34835.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A str. ATCC 19397]
 gi|152932809|gb|ABS38308.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A str. Hall]
          Length = 398

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++  +C  CG C   CP DAI
Sbjct: 5  IIKEKCKAC--GICEKQCPFDAIHVVNGLAEVNE-KCTICGACVEACPFDAI 53


>gi|121534160|ref|ZP_01665985.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307263|gb|EAX48180.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 272

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C    CV+VCP    ++ +  +  +  ++CI CG C   CP +
Sbjct: 75  CFHCGEAACVKVCPSGALFKTKTGIVAVDREKCIACGYCHNACPFN 120


>gi|121608149|ref|YP_995956.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121552789|gb|ABM56938.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 496

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCPV               ECI CG+C   C     K    PGL  +  
Sbjct: 287 CIDC--TLCVQVCPVGIDIRKGLQY-----ECIGCGLCVDACNTVMDKMHYPPGLIRYST 339

Query: 69  INS 71
            N+
Sbjct: 340 HNA 342


>gi|213419119|ref|ZP_03352185.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 228

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 166 CEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWK 219


>gi|171184831|ref|YP_001793750.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934043|gb|ACB39304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 221

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP +  Y+  + L  +    CI C  C   CP  A+  D +
Sbjct: 63  CQHCDKPYCVATCPTNALYKDRDGLVKLRESSCIGCKYCLAACPYGAVWWDEK 115


>gi|281358774|ref|ZP_06245249.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC
          BAA-548]
 gi|281314729|gb|EFA98767.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC
          BAA-548]
          Length = 582

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y +   C  C    CV  CPV      +   A+ P+ C+ CG C   CPV A
Sbjct: 8  YTIEAECQDCYK--CVRHCPVKAIRVRDGHAAVIPELCVACGKCVEVCPVKA 57



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGE 30
          V+ E C+ C    CVEVCPV       
Sbjct: 38 VIPELCVAC--GKCVEVCPVKAKQVRN 62


>gi|331647164|ref|ZP_08348258.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M605]
 gi|330911480|gb|EGH39990.1| putative oxidoreductase, Fe-S subunit [Escherichia coli AA86]
 gi|331043947|gb|EGI16083.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M605]
          Length = 208

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|291523456|emb|CBK81749.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus
           catus GD/7]
          Length = 487

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VT NC +C    C+  C             I   +C +CG C   CP +AI
Sbjct: 96  FNVTNNCQMCMAKKCLGACNFGAIKFEGGHAVIDHKKCKECGKCAEACPYNAI 148



 Score = 40.7 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVC 46
             +  + C  C                  C   CPVD      +N + I+ ++CI+CG C
Sbjct: 126 AVIDHKKCKECGKCAEACPYNAIADLMRPCKRSCPVDAITMDEDNIVVINEEKCINCGQC 185

Query: 47  EPECPVDAI 55
              CP  A+
Sbjct: 186 VINCPFGAL 194


>gi|168263386|ref|ZP_02685359.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205347881|gb|EDZ34512.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 223

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPYR 138


>gi|167630565|ref|YP_001681064.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
          [Heliobacterium modesticaldum Ice1]
 gi|167593305|gb|ABZ85053.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
          [Heliobacterium modesticaldum Ice1]
          Length = 60

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          MT+++ ++C+ C    C   CP +   EG +   I  D+CIDCG C   CPV A +P+
Sbjct: 1  MTHIINDDCVNC--GACAPECPTNAISEGPDKYIIDADKCIDCGACADVCPVGAPRPE 56


>gi|15803422|ref|NP_289455.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          EDL933]
 gi|15833012|ref|NP_311785.1| oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|217327883|ref|ZP_03443966.1| 4Fe-4S binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254794837|ref|YP_003079674.1| putative oxidoreductase [Escherichia coli O157:H7 str. TW14359]
 gi|12517409|gb|AAG58014.1|AE005518_8 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. EDL933]
 gi|13363230|dbj|BAB37181.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7
          str. Sakai]
 gi|209760648|gb|ACI78636.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760650|gb|ACI78637.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760652|gb|ACI78638.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760654|gb|ACI78639.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760656|gb|ACI78640.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|217320250|gb|EEC28675.1| 4Fe-4S binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254594237|gb|ACT73598.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|320189228|gb|EFW63887.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. EC1212]
 gi|326339031|gb|EGD62846.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. 1044]
 gi|326343086|gb|EGD66854.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. 1125]
          Length = 131

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 24 CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 78


>gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
          Length = 627

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  E C  C  T C  VCP      E +    I+ D C+ CG C  +C   +I
Sbjct: 573 YINPEKCKGC--TVCSRVCPAGAITGEKKQPHVINVDLCLKCGACMEKCKFGSI 624



 Score = 33.8 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWP 78
           + CP       +    I+P++C  C VC   CP  AI  + +        IN +   +  
Sbjct: 559 KKCPAGACQALKE-YYINPEKCKGCTVCSRVCPAGAITGEKKQPHV----INVDLCLKCG 613

Query: 79  NITTK 83
               K
Sbjct: 614 ACMEK 618


>gi|269956614|ref|YP_003326403.1| nitrate reductase subunit beta [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305295|gb|ACZ30845.1| nitrate reductase, beta subunit [Xylanimonas cellulosilytica DSM
           15894]
          Length = 559

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 182 CEHCLNPACVASCPSGAMYKRSEDGIVLVDQDKCRGWRMCVTGCPYKKVYF 232


>gi|253701244|ref|YP_003022433.1| formate dehydrogenase transmembrane domain protein [Geobacter sp.
           M21]
 gi|251776094|gb|ACT18675.1| Formate dehydrogenase transmembrane domain protein [Geobacter sp.
           M21]
          Length = 263

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + C+ C    C++VCP     Y  +   +  + ++CI C  C   CP +  + D++  +
Sbjct: 78  NQRCMHCGDAGCIKVCPAPGALYRTKEGSVVFNKEKCISCKYCVSACPFNVPRYDSDDKV 137

Query: 64  EL 65
             
Sbjct: 138 AK 139


>gi|240102306|ref|YP_002958614.1| formate dehydrogenase I subunit B (fdh1B) [Thermococcus
          gammatolerans EJ3]
 gi|239909859|gb|ACS32750.1| formate dehydrogenase I subunit B (fdh1B) [Thermococcus
          gammatolerans EJ3]
          Length = 165

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          + V  NC  C+   C+ VCP    +  ++      P +CI C +C   CP    K D E
Sbjct: 40 FTVPFNCRHCEKAPCLNVCPTGALFRDKDGAVAFDPLKCIGCLMCAVACPFGVPKLDEE 98


>gi|225175931|ref|ZP_03729923.1| sigma54 specific transcriptional regulator, Fis family
          [Dethiobacter alkaliphilus AHT 1]
 gi|225168519|gb|EEG77321.1| sigma54 specific transcriptional regulator, Fis family
          [Dethiobacter alkaliphilus AHT 1]
          Length = 739

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 1  MTYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IK 56
          M  V TE+  C  C    CV  CPV      +   ++    CI CG C+  C   A  I+
Sbjct: 1  MPVVRTESNLCKRCY--ACVRNCPVKAIKVEDGQASVTEASCITCGACKNVCSQQAKQIR 58

Query: 57 PDTE 60
           D +
Sbjct: 59 RDVD 62


>gi|225574877|ref|ZP_03783487.1| hypothetical protein RUMHYD_02955 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037900|gb|EEG48146.1| hypothetical protein RUMHYD_02955 [Blautia hydrogenotrophica DSM
           10507]
          Length = 586

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI CK   C++  CP   + +    ++I   +C+ C VC   CP  AI  + +
Sbjct: 531 VDHEKCIGCK--RCIKTGCPALAYDKKTKKVSIDKGQCVACDVCAQVCPKGAIGREEK 586


>gi|254513803|ref|ZP_05125864.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR5-3]
 gi|219676046|gb|EED32411.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR5-3]
          Length = 202

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +++ E+CI C  T C++ CPVD      +    +   EC  C +C   CPVD I+ 
Sbjct: 114 AFIIEEDCIGC--TKCIQACPVDAIVGAAKQMHTVIAAECTGCDLCVDPCPVDCIEM 168


>gi|182413283|ref|YP_001818349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177840497|gb|ACB74749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 179

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGL 63
           +E C  C +  CV  CP    +  +    +   P++CI C  C   CP DA     +   
Sbjct: 55  SERCNHCDNPPCVHCCPTGASHVHDRGGVVLVTPEKCIGCKACLAACPYDARFIHPDGYA 114

Query: 64  EL 65
           + 
Sbjct: 115 DK 116


>gi|150401223|ref|YP_001324989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013926|gb|ABR56377.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 131

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C    CV  CPV      E  +    DECI C  C   CP +A++   E
Sbjct: 79  EDKCIDC--GACVVHCPVKAISVEEYKIIFDYDECIGCKNCVKVCPTNAVEVLDE 131


>gi|114049025|ref|YP_739575.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|117918948|ref|YP_868140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|113890467|gb|ABI44518.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
 gi|117611280|gb|ABK46734.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 235

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +       + +   +C  C  C   CP +A  I  DT+   
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDTDVAD 164

Query: 64  ELWLKINSEYAT 75
                +NS+ A 
Sbjct: 165 NCDFCLNSKLAK 176


>gi|333005345|gb|EGK24864.1| nitrate reductase, beta subunit [Shigella flexneri K-272]
 gi|333018514|gb|EGK37810.1| nitrate reductase, beta subunit [Shigella flexneri K-227]
          Length = 310

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 184 CEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWK 237


>gi|326519500|dbj|BAK00123.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 223

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 121 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  + +  
Sbjct: 179 VEGP----------NFEFSTETHEELLYDKEKLLENGDRWETE 211


>gi|297161370|gb|ADI11082.1| nitrate reductase beta chain NarH3 [Streptomyces bingchenggensis
           BCW-1]
          Length = 560

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV VCP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 189 CEHCLNPSCVAVCPSGAMYKRVEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 239


>gi|257789941|ref|YP_003180547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257473838|gb|ACV54158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 188

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CP    ++      ++++ D CI CG C   CP  A   +    
Sbjct: 67  CNHCENPACVNNCPSGAMHKDPATGIVSVNQDVCIACGYCSWVCPYGAPSMNDVDH 122


>gi|194289959|ref|YP_002005866.1| iron-sulfur 4fe-4S ferredoxin transmembrane protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223794|emb|CAQ69801.1| IRON-SULFUR 4FE-4S FERREDOXIN TRANSMEMBRANE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 490

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI CG C   C     K D   GL  +  
Sbjct: 277 CVNCS--ICVQVCPTGIDIRDGLQY-----ECIGCGACIDACNQVMDKMDYPRGLIRYTS 329

Query: 69  INS 71
            N+
Sbjct: 330 ENA 332


>gi|166030704|ref|ZP_02233533.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC
          27755]
 gi|166029496|gb|EDR48253.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC
          27755]
          Length = 56

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+ ++CI C    C   CPV    EG+    I+ D CIDCG C  +CPV AI
Sbjct: 1  MAHVIGDDCISC--GSCEAECPVSAISEGDGKYEINADACIDCGACAAQCPVGAI 53


>gi|171185947|ref|YP_001794866.1| putative ATPase RIL [Thermoproteus neutrophilus V24Sta]
 gi|170935159|gb|ACB40420.1| ABC transporter related [Thermoproteus neutrophilus V24Sta]
          Length = 590

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPVD------CFYEGENFLAIHPDECIDCGVCEPECPVD 53
            V  + C    C   +CV+ CPV+         E      I    CI CG+C  +CP  
Sbjct: 5  AVVDRDACQPKKC-GQECVKYCPVNRSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFQ 63

Query: 54 AI 55
          AI
Sbjct: 64 AI 65


>gi|73541725|ref|YP_296245.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72119138|gb|AAZ61401.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 490

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI CG C   C     K D   GL  +  
Sbjct: 277 CVNCS--ICVQVCPTGIDIRDGLQY-----ECIGCGACIDACNQVMDKMDYPRGLIRYTS 329

Query: 69  INS 71
            N+
Sbjct: 330 ENA 332


>gi|302694183|ref|XP_003036770.1| hypothetical protein SCHCODRAFT_72253 [Schizophyllum commune H4-8]
 gi|300110467|gb|EFJ01868.1| hypothetical protein SCHCODRAFT_72253 [Schizophyllum commune H4-8]
          Length = 236

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 134 EERCIACKL--CEAICPAQAITIESEARADGSRKTTKYDIDMIKCIYCGFCQEACPVDAI 191

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N E+AT+     +  K++ L +  +M+  
Sbjct: 192 VE----------TQNQEFATETREELLYNKEKLLSNGDRMEAE 224


>gi|284049120|ref|YP_003399459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
 gi|283953341|gb|ADB48144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
          Length = 375

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E C  C    C + C  D   Y   +   I  ++C  CG C   C  DAI+      
Sbjct: 192 VDEELCRGC--GRCAKECGSDAISYGENHKAHIDEEKCAGCGRCIGACGFDAIQSVQWDA 249

Query: 63  LELWLKINSEYA 74
            EL  +  +EYA
Sbjct: 250 NELLDRKMAEYA 261


>gi|257791430|ref|YP_003182036.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317490572|ref|ZP_07949047.1| formate dehydrogenase [Eggerthella sp. 1_3_56FAA]
 gi|325831451|ref|ZP_08164705.1| putative formate dehydrogenase, beta subunit [Eggerthella sp. HGA1]
 gi|257475327|gb|ACV55647.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316910321|gb|EFV31955.1| formate dehydrogenase [Eggerthella sp. 1_3_56FAA]
 gi|325486705|gb|EGC89153.1| putative formate dehydrogenase, beta subunit [Eggerthella sp. HGA1]
          Length = 307

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C  C    C  +CP     + E   F+++   +CI C  C   CP D  +  
Sbjct: 78  SCQHCTDAPCATICPGGALKKDEATGFVSVDESKCIGCRYCSTACPFDVPQYH 130


>gi|227111751|ref|ZP_03825407.1| nitrite reductase complex component [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 223

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAASGIVDVNPDLCVGCQYCLAACPYQ 138


>gi|198275297|ref|ZP_03207828.1| hypothetical protein BACPLE_01456 [Bacteroides plebeius DSM 17135]
 gi|198271880|gb|EDY96150.1| hypothetical protein BACPLE_01456 [Bacteroides plebeius DSM 17135]
          Length = 491

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C   CP    +  +      I  D+CI CG+C   CP  AI     
Sbjct: 114 YEVSNLCRGCVARSCYMNCPKGAVHFNKKTGQAQIDHDKCISCGICHKSCPYHAIVYIPV 173

Query: 61  PGLEL 65
           P  E 
Sbjct: 174 PCEEA 178



 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C E CPV    + E+++  I   +CI CG C  
Sbjct: 148 IDHDKCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHYIEHIDESKCIYCGKCLN 207

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 208 ACPFGAIF 215


>gi|194901136|ref|XP_001980108.1| GG20344 [Drosophila erecta]
 gi|195501171|ref|XP_002097689.1| GE26357 [Drosophila yakuba]
 gi|190651811|gb|EDV49066.1| GG20344 [Drosophila erecta]
 gi|194183790|gb|EDW97401.1| GE26357 [Drosophila yakuba]
          Length = 217

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|115502490|sp|Q0MQI2|NDUS8_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|111661819|gb|ABH12161.1| mitochondrial complex I subunit NDUFS8 [Gorilla gorilla]
          Length = 210

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|15669380|ref|NP_248188.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|41018414|sp|Q58593|VHUB_METJA RecName: Full=Polyferredoxin protein vhuB
 gi|1591821|gb|AAB99195.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 394

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C+ C    CV  CPV+      N   I   +CI C +C   CP +AI 
Sbjct: 138 VTDACVGC--GICVPECPVNAITLENNKAVIDKSKCIYCSICAQTCPWNAIF 187



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E CI C    CVEVCP D      EN + I P  C  C +C   CPVDA+  +
Sbjct: 205 VNAEKCIYCLK--CVEVCPGDMIKVDEENLIVIPPKSCPACKLCVNICPVDALDLE 258


>gi|332671595|ref|YP_004454603.1| nitrate reductase subunit beta [Cellulomonas fimi ATCC 484]
 gi|332340633|gb|AEE47216.1| nitrate reductase, beta subunit [Cellulomonas fimi ATCC 484]
          Length = 576

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D C     C   CP   I  
Sbjct: 186 CEHCLNPSCMASCPSGAIYKRAEDGIVLVDQDRCRGWRQCITGCPYKKIYF 236


>gi|289450529|ref|YP_003475312.1| ferredoxin [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185076|gb|ADC91501.1| ferredoxin [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 56

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +++ CI C    C   CP      G+    I+P+ CIDCG CE  CPV AI  +
Sbjct: 1  MAYKISDMCISC--GTCEMECPTSSISAGDTQYIINPETCIDCGACEGACPVGAISAE 56


>gi|85708744|ref|ZP_01039810.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1]
 gi|85690278|gb|EAQ30281.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1]
          Length = 162

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  K +
Sbjct: 118 V--EGPNFEYATETREEL------LYDKAKLLANGDKWE 148


>gi|324005433|gb|EGB74652.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
          Length = 289

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCPGCRYCMVACPYNVPKYDY 125


>gi|297526831|ref|YP_003668855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297255747|gb|ADI31956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 166

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           +   C+ C+   C+ VCPV+            I+ D+CI C  C   CP  AI
Sbjct: 60  IPTTCMQCEDAPCMRVCPVNAITYNPETGAYIINHDKCIGCYECVYACPFGAI 112



 Score = 40.7 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y++  + CI C    CV  CP            +  D C     C   CP +AI  +  
Sbjct: 89  AYIINHDKCIGCYE--CVYACPFGAIIINRRAQVVKCDLCGGDPECVKVCPTNAIVYEKT 146

Query: 61  PGLE 64
           P   
Sbjct: 147 PYKN 150


>gi|257457555|ref|ZP_05622722.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580]
 gi|257444941|gb|EEV20017.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580]
          Length = 56

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +++ C+ C    C   CPV    E      I  D CI CG C   CP +AI
Sbjct: 1  MAYKISDACVNC--GACEGECPVGAISEANGARVIDADACISCGACAGVCPTEAI 53


>gi|254559063|ref|YP_003066158.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           DM4]
 gi|254266341|emb|CAX22105.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           DM4]
          Length = 665

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 267 TGC--TRCLDVCPTGAISPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPADALMRRL 324



 Score = 38.8 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP            LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLCL--SCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELWLK 68
           E W +
Sbjct: 565 EAWGE 569


>gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
 gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
          Length = 595

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CP D      +    IH D+C+ CG C  +C   AI  +
Sbjct: 542 IDADKCKGC--TLCARTCPNDAISGAVKEPHVIHQDKCVKCGACMEKCRFGAIYKE 595


>gi|160936135|ref|ZP_02083508.1| hypothetical protein CLOBOL_01031 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440945|gb|EDP18669.1| hypothetical protein CLOBOL_01031 [Clostridium bolteae ATCC
          BAA-613]
          Length = 464

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C +  C++ CP +         +I+   CIDCG C   CP  A
Sbjct: 15 CKGCIN--CIKRCPTEAIRVRGGKASINNKFCIDCGECIRVCPHHA 58


>gi|84490254|ref|YP_448486.1| flavoprotein [Methanosphaera stadtmanae DSM 3091]
 gi|84373573|gb|ABC57843.1| predicted flavoprotein [Methanosphaera stadtmanae DSM 3091]
          Length = 235

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y+  E C  C        CP +     E    I+  +CI C  C+  CP  AI  D
Sbjct: 141 PYIDKEKCKKCTPCPAQRSCPTNAIIPPE----INTIKCISCKKCKETCPYHAINTD 193


>gi|89892933|ref|YP_516420.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89332381|dbj|BAE81976.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 190

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C+   CV+ CP    Y+ E    + +  ++C+ CG C   CP  A
Sbjct: 60  AYWLSMSCNHCQEPKCVQNCPAGAMYKREEDGIVLVDQNKCLGCGYCTWSCPYGA 114


>gi|219666198|ref|YP_002456633.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219536458|gb|ACL18197.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 190

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C+   CV+ CP    Y+ E    + +  ++C+ CG C   CP  A
Sbjct: 60  AYWLSMSCNHCQEPKCVQNCPAGAMYKREEDGIVLVDQNKCLGCGYCTWSCPYGA 114


>gi|332973049|gb|EGK10986.1| iron-sulfur cluster-binding protein [Kingella kingae ATCC 23330]
          Length = 285

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I 
Sbjct: 72  AWIDEAVCIGC--TACIRACPVDAIMGASKLMHTVLADECTGCGLCVAPCPVDCIY 125



 Score = 34.2 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF 32
           M  V+ + C  C    CV  CPVDC Y     
Sbjct: 101 MHTVLADECTGC--GLCVAPCPVDCIYLQPTK 130


>gi|296218966|ref|XP_002755672.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Callithrix jacchus]
          Length = 210

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|261211018|ref|ZP_05925308.1| NrfC protein [Vibrio sp. RC341]
 gi|260839993|gb|EEX66593.1| NrfC protein [Vibrio sp. RC341]
          Length = 212

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           +C  C++  CV VCP    Y+ E    +   +  C+ CG C   CP       
Sbjct: 82  SCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACPYQVRFFH 134


>gi|258690614|gb|ACV88069.1| NarH [Halomonas denitrificans]
          Length = 334

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 169 CEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYNWK 222


>gi|226323506|ref|ZP_03799024.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758]
 gi|225208190|gb|EEG90544.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758]
          Length = 56

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV     G + + I    C+DCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSC--GACESECPVGAISMGADHMQIDASACVDCGACESACPTGAISAE 56


>gi|218699761|ref|YP_002407390.1| hypothetical protein ECIAI39_1384 [Escherichia coli IAI39]
 gi|218369747|emb|CAR17518.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli IAI39]
 gi|323968440|gb|EGB63846.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|323978189|gb|EGB73275.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
 gi|327252790|gb|EGE64444.1| 4Fe-4S binding domain protein [Escherichia coli STEC_7v]
          Length = 208

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|212704793|ref|ZP_03312921.1| hypothetical protein DESPIG_02857 [Desulfovibrio piger ATCC 29098]
 gi|212671755|gb|EEB32238.1| hypothetical protein DESPIG_02857 [Desulfovibrio piger ATCC 29098]
          Length = 370

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  E C  CK   C   C       G ++   I  D C  CG C   C  DAI    +  
Sbjct: 192 IDAEKCRGCK--TCTHYCAQSAISIGEDHKARIDHDLCAGCGRCIGVCNFDAISNAFDAE 249

Query: 63  LELWLKINSEYAT 75
             +  +  +EY  
Sbjct: 250 STILNERMAEYTK 262


>gi|167761979|ref|ZP_02434106.1| hypothetical protein BACSTE_00324 [Bacteroides stercoris ATCC
           43183]
 gi|167700211|gb|EDS16790.1| hypothetical protein BACSTE_00324 [Bacteroides stercoris ATCC
           43183]
          Length = 277

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TE C  C +  CV+ CP     +G+       ++CI C  C   CP  A   DT 
Sbjct: 205 VDTELCNHCGY--CVKHCPAGAIVKGDECST-DVEKCIRCCACVKGCPQKARTFDTP 258


>gi|150401708|ref|YP_001325474.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014411|gb|ABR56862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 138

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V   C+ C+   C+ +CP        + + +  DECI C +C   CP  A++ D
Sbjct: 31 VPLKCMHCEDAPCLNICPEGAIKRINDKVVVISDECIGCELCVSACPFGAMRMD 84



 Score = 33.8 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+++ CI C+   CV  CP        +       +C  C   + E    A   +     
Sbjct: 61  VISDECIGCEL--CVSACPFGAMRMDLSSKV--AYKCNGCYELDEEVCKLACPTNALDYS 116

Query: 64  ELWLKINSE 72
           E  ++   +
Sbjct: 117 EKEVEEKQK 125


>gi|126460102|ref|YP_001056380.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249823|gb|ABO08914.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 194

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   CV  CP    Y  ++   + +  + C+ C  C   CP DA   + E     
Sbjct: 71  CQHCEDAPCVRNCPTGASYVDKDGGIVLVDYNLCVGCKYCISSCPYDARWINKEGTPSK 129


>gi|153004662|ref|YP_001378987.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028235|gb|ABS26003.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 295

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C   CPV    +      +  P +C+ C  C   CP D  K + +
Sbjct: 103 CMHCLAPGCASACPVRAMDKSPEGPVVYDPSKCMGCRYCMVACPFDVPKYEYD 155


>gi|91210887|ref|YP_540873.1| hypothetical protein UTI89_C1866 [Escherichia coli UTI89]
 gi|117623855|ref|YP_852768.1| hypothetical protein APECO1_753 [Escherichia coli APEC O1]
 gi|218558543|ref|YP_002391456.1| hypothetical protein ECS88_1722 [Escherichia coli S88]
 gi|237705620|ref|ZP_04536101.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|331657649|ref|ZP_08358611.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA206]
 gi|91072461|gb|ABE07342.1| putative ferredoxin-like protein YdhY [Escherichia coli UTI89]
 gi|115512979|gb|ABJ01054.1| putative ferredoxin-like protein YdhY [Escherichia coli APEC O1]
 gi|218365312|emb|CAR03033.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli S88]
 gi|226900377|gb|EEH86636.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294491081|gb|ADE89837.1| iron-sulfur cluster-binding protein [Escherichia coli IHE3034]
 gi|307626840|gb|ADN71144.1| hypothetical protein UM146_08785 [Escherichia coli UM146]
 gi|315286336|gb|EFU45772.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|323952181|gb|EGB48054.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323956575|gb|EGB52313.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
 gi|331055897|gb|EGI27906.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA206]
          Length = 208

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit
           [uncultured archaeon GZfos26D6]
          Length = 654

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVD 53
           Y+  + C  C+   C++ CP       +     I   +CI CG+C   CP  
Sbjct: 563 YIEPDKCTACRL--CMKNCPEGAIEGDKRVIHVIDQTKCIKCGICYDVCPPK 612


>gi|9651775|gb|AAF91267.1|AF230199_9 pyruvate oxidoreductase cysteine-rich subunit 2 [Methanococcus
          maripaludis]
          Length = 138

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +   C+ C+   C+ VCP D   +  + + +HP++C+ C +C   CPV AI+ D
Sbjct: 31 IPIRCMHCEDAPCLNVCPEDAIEKIADKVVVHPEKCVGCALCAEVCPVGAIQID 84


>gi|269798703|ref|YP_003312603.1| nitroreductase [Veillonella parvula DSM 2008]
 gi|269095332|gb|ACZ25323.1| nitroreductase [Veillonella parvula DSM 2008]
          Length = 271

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       +         CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRC--GLCVADCPTGLLVMSDAGPVTGRGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|261364486|ref|ZP_05977369.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567418|gb|EFC88978.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           mucosa ATCC 25996]
          Length = 282

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C+  CPVD      +    +  DEC  CG+C P CPVD I  D  
Sbjct: 73  ALIDEAACIGC--TACIRACPVDAIMGASKFMHTVISDECTGCGLCLPPCPVDCI--DMI 128

Query: 61  PGLELWLKINSEYAT 75
           P  + +L      + 
Sbjct: 129 PSEKEYLPAARSLSR 143


>gi|212223691|ref|YP_002306927.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
 gi|212008648|gb|ACJ16030.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
          Length = 168

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
          +  NC  C+   C++VCP    Y   +  + I+PD+CI C +C   CP      D
Sbjct: 44 IPINCRHCERAPCMDVCPAGAIYRDSDGAIIINPDKCIGCYMCLAVCPFGVPSFD 98


>gi|171911668|ref|ZP_02927138.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Verrucomicrobium spinosum DSM 4136]
          Length = 1097

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C+   C  VCPV+   +  +   A+  + CI    C   CP  A
Sbjct: 877 ACQQCESAPCETVCPVNATVHTEDGLNAMAYNRCIGTRYCANNCPYTA 924


>gi|168027577|ref|XP_001766306.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682520|gb|EDQ68938.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 123 EERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 180

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   + + E       +  K++ L +  + +  
Sbjct: 181 V--EGPNFEFTTETHEEL------LYDKEKLLENGDRWETE 213


>gi|126460510|ref|YP_001056788.1| respiratory nitrate reductase beta subunit [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250231|gb|ABO09322.1| respiratory nitrate reductase beta subunit [Pyrobaculum
           calidifontis JCM 11548]
          Length = 473

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C+  CP    Y+   +  + +    C     C   CP   +  + +
Sbjct: 172 CNHCLNPSCLAACPRKAIYKREEDGIVLVDQTRCRGYRYCVAACPYKKVYYNWK 225


>gi|45359066|ref|NP_988623.1| pyruvate oxidoreductase-associated [Methanococcus maripaludis S2]
 gi|45047941|emb|CAF31059.1| conserved archaeal protein, pyruvate oxidoreductase-associated
          [Methanococcus maripaludis S2]
          Length = 167

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C+EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91



 Score = 33.8 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+  E+CI C    C   CP    Y  G+           D   C   C    ++     
Sbjct: 69  YLDKESCIGC--GLCAMACPFGAIYISGKTAHKCDLCFGRDEQACVKACSKRCLEVVNVD 126

Query: 62  GLELWLKIN 70
            L +  K+N
Sbjct: 127 ELVMDKKLN 135


>gi|145222745|ref|YP_001133423.1| nitrate reductase, beta subunit [Mycobacterium gilvum PYR-GCK]
 gi|315443212|ref|YP_004076091.1| respiratory nitrate reductase subunit beta [Mycobacterium sp.
           Spyr1]
 gi|145215231|gb|ABP44635.1| respiratory nitrate reductase beta subunit [Mycobacterium gilvum
           PYR-GCK]
 gi|315261515|gb|ADT98256.1| respiratory nitrate reductase beta subunit [Mycobacterium sp.
           Spyr1]
          Length = 550

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|303256134|ref|ZP_07342151.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302861104|gb|EFL84178.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 192

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV+ CP    Y  EN L    P++C+ C  C   CP DA     +
Sbjct: 67  CQHCSDAPCVKTCPFGANYYDENGLVRNDPNKCVGCNYCVASCPYDARWSHPD 119


>gi|295106884|emb|CBL04427.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 261

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVD 53
           C  C +  CVE CPV   +         +   +CI C  C   CP  
Sbjct: 110 CRQCPYPSCVEACPVGAMHADPATGVRLVDEGKCIGCERCVEACPFT 156


>gi|294792618|ref|ZP_06757765.1| nitroreductase family protein [Veillonella sp. 6_1_27]
 gi|294456517|gb|EFG24880.1| nitroreductase family protein [Veillonella sp. 6_1_27]
          Length = 271

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       +         CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRC--GLCVADCPTGLLVMSDAGPVTGRGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|227328565|ref|ZP_03832589.1| electron transport protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 173

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C++  C  VCP D      + + +    CI C  C   CP  AI 
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAIN 104


>gi|117927716|ref|YP_872267.1| respiratory nitrate reductase beta subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648179|gb|ABK52281.1| respiratory nitrate reductase beta subunit [Acidothermus
           cellulolyticus 11B]
          Length = 549

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C     C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDKCRGWRFCVSGCPYKKVYF 232


>gi|330007988|ref|ZP_08306132.1| electron transport protein HydN [Klebsiella sp. MS 92-3]
 gi|328535262|gb|EGF61753.1| electron transport protein HydN [Klebsiella sp. MS 92-3]
          Length = 175

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P +  
Sbjct: 57  ACRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRH 114


>gi|254797156|ref|YP_003081994.1| NADH-quinone oxidoreductase subunit i [Neorickettsia risticii str.
           Illinois]
 gi|254590388|gb|ACT69750.1| NADH-quinone oxidoreductase subunit i [Neorickettsia risticii str.
           Illinois]
          Length = 160

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 21/100 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 57  EERCIACKL--CEVICPAQAITIEAAPRESDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
           I    E     + + N E       +  K++ L + +K +
Sbjct: 115 I---VEGPNFEFARENRE-----DLLYNKEKLLDNGSKWE 146


>gi|239627939|ref|ZP_04670970.1| fe-S cluster domain-containing protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518085|gb|EEQ57951.1| fe-S cluster domain-containing protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 466

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C +  C++ CP +         +I+   CIDCG C   CP  A
Sbjct: 15 CKGCIN--CIKRCPTEAIRVRGGKASINNKFCIDCGECIRVCPHHA 58


>gi|332800160|ref|YP_004461659.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Tepidanaerobacter sp. Re1]
 gi|332697895|gb|AEE92352.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Tepidanaerobacter sp. Re1]
          Length = 593

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C+   C    CP   F        I   +CI C VC   CPV+AI    E
Sbjct: 538 VDEEICNGCR--ACTRTGCPAINFSMNNKKSYIDQAQCIGCSVCAQVCPVNAIHEKGE 593



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE 28
           +Y+    CI C    C +VCPV+  +E
Sbjct: 566 SYIDQAQCIGCS--VCAQVCPVNAIHE 590


>gi|259502937|ref|ZP_05745839.1| respiratory nitrate reductase [Lactobacillus antri DSM 16041]
 gi|312868703|ref|ZP_07728896.1| nitrate reductase, beta subunit [Lactobacillus oris PB013-T2-3]
 gi|259169062|gb|EEW53557.1| respiratory nitrate reductase [Lactobacillus antri DSM 16041]
 gi|311095817|gb|EFQ54068.1| nitrate reductase, beta subunit [Lactobacillus oris PB013-T2-3]
          Length = 519

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNAPCVASCPSGAMYKRDEDGIVLVDQERCRGWRFCMTGCPYKKVYFN 234

Query: 59  TEPGLEL 65
            +     
Sbjct: 235 WKTHKAE 241


>gi|254173494|ref|ZP_04880166.1| RNase L inhibitor [Thermococcus sp. AM4]
 gi|214032186|gb|EEB73016.1| RNase L inhibitor [Thermococcus sp. AM4]
          Length = 589

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E      I    C  CG+C  +CP +AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPVIQEASCTGCGICVHKCPFNAI 66


>gi|158320132|ref|YP_001512639.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158140331|gb|ABW18643.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 226

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEP 61
           ++  C  C    CV  CP      Y+ +N + +H  E CI C  CE  CP   I  +   
Sbjct: 54  ISTLCNHCDDAPCVNACPLNPKAMYKSDNGITMHNHEACIGCRACEKACPYSVISFNETE 113

Query: 62  GLELW 66
               W
Sbjct: 114 PFGEW 118


>gi|320160963|ref|YP_004174187.1| indolepyruvate oxidoreductase subunit IorA [Anaerolinea thermophila
           UNI-1]
 gi|319994816|dbj|BAJ63587.1| indolepyruvate oxidoreductase subunit IorA [Anaerolinea thermophila
           UNI-1]
          Length = 609

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 9/59 (15%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEG------ENFLAIHPDECIDCGVCEPECPVDAI 55
           VV E C  C  T C  V CP     E            I P  C  C +C   CP DAI
Sbjct: 539 VVEEKCNGC--TMCFRVGCPAISKSEKLDPRYQRPLAVIDPSLCTGCEICAQVCPRDAI 595


>gi|319902323|ref|YP_004162051.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417354|gb|ADV44465.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           helcogenes P 36-108]
          Length = 320

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP D I
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQDTI 265



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C     +         +   +C  CG C   CP + I
Sbjct: 142 CLGC--GDCVAACQFGAIHMNPETGLPEVDEAKCTACGACAKACPKNII 188


>gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519]
 gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii]
          Length = 576

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C+ C  T C + CPV C   E +    I+ D CI CG C  +C  DAI
Sbjct: 521 YVIDPEKCVGC--TVCAKACPVSCISGERKEPHLINQDACIKCGQCYQKCKFDAI 573


>gi|303239438|ref|ZP_07325965.1| nitrite and sulphite reductase 4Fe-4S region [Acetivibrio
           cellulolyticus CD2]
 gi|302593001|gb|EFL62722.1| nitrite and sulphite reductase 4Fe-4S region [Acetivibrio
           cellulolyticus CD2]
          Length = 317

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             ++C  CK     + CP++     +  L I+ + C +CG C+ +C  DAI
Sbjct: 170 DEDSCNGCKKCSIEDTCPMNAAKVVDGILEINKEICNNCGRCDGKCHFDAI 220


>gi|259419188|ref|ZP_05743105.1| NADH-quinone oxidoreductase, i subunit [Silicibacter sp. TrichCH4B]
 gi|259345410|gb|EEW57264.1| NADH-quinone oxidoreductase, i subunit [Silicibacter sp. TrichCH4B]
          Length = 164

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKDKLLANGERWEAE 152


>gi|238916582|ref|YP_002930099.1| coenzyme F420 hydrogenase [Eubacterium eligens ATCC 27750]
 gi|238871942|gb|ACR71652.1| coenzyme F420 hydrogenase [Eubacterium eligens ATCC 27750]
          Length = 299

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + + CI C    C + C        +  +A+  D+C  CG C   CP DA
Sbjct: 174 IEDKCIGC--GVCEKACRTGAITMQDGKVAVDYDKCNYCGRCAKSCPTDA 221



 Score = 33.8 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C++ +C++    D   +G   +    D+CI CGVCE  C   AI          + K 
Sbjct: 149 TGCQN-NCLKAEENDVGIKGAADVKWIEDKCIGCGVCEKACRTGAITMQDGKVAVDYDKC 207

Query: 70  N 70
           N
Sbjct: 208 N 208


>gi|163749870|ref|ZP_02157115.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
 gi|161330384|gb|EDQ01363.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
          Length = 186

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ L   + D CI CG C   CP  A
Sbjct: 50  ISVACMHCTDAPCMAVCPANCFYQTEDGLTLHNKDTCIGCGYCLYACPFGA 100


>gi|160895522|ref|YP_001561104.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Delftia
          acidovorans SPH-1]
 gi|160361106|gb|ABX32719.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Delftia
          acidovorans SPH-1]
          Length = 439

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CPV      +    +  ++C  C  C   CP  AI  
Sbjct: 16 IDPEICIRCN--TCEATCPVGAITHDDRNYVVLAEQCNGCMDCVSPCPTGAIDN 67


>gi|254975433|ref|ZP_05271905.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-66c26]
 gi|255092820|ref|ZP_05322298.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile CIP 107932]
 gi|255517237|ref|ZP_05384913.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-97b34]
 gi|255650343|ref|ZP_05397245.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-37x79]
 gi|260683456|ref|YP_003214741.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile CD196]
 gi|260687052|ref|YP_003218185.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile R20291]
 gi|306520306|ref|ZP_07406653.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-32g58]
 gi|260209619|emb|CBA63285.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile CD196]
 gi|260213068|emb|CBE04440.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile R20291]
          Length = 315

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +E C+ CK    VEVCPV       +  L I  + C +CG C   C  D+I
Sbjct: 168 DSELCVGCKKCAVVEVCPVKAAKLTDKGKLEIDSNLCNNCGKCIESCNFDSI 219


>gi|150389143|ref|YP_001319192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149949005|gb|ABR47533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 177

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDA 54
          Y V+ +C  C+   CVE CPV    +G++   +    ++CI C  C   CP  A
Sbjct: 43 YHVSMSCNHCEIPVCVENCPVGAMNKGKDNGVVDIVKEKCIGCQRCVKTCPYGA 96


>gi|304311640|ref|YP_003811238.1| Dimethylsulfide dehydrogenase beta subunit [gamma proteobacterium
           HdN1]
 gi|301797373|emb|CBL45593.1| Dimethylsulfide dehydrogenase beta subunit [gamma proteobacterium
           HdN1]
          Length = 359

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  C E CP       E +  + ++ D C     C   CP   +  DT
Sbjct: 159 CNHCTHPACKEACPRGAIEKREQDGIVVVNQDHCNGYRFCVEACPYKKVYFDT 211


>gi|299531136|ref|ZP_07044548.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni S44]
 gi|298720839|gb|EFI61784.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni S44]
          Length = 433

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I  
Sbjct: 17 IDPEICIRCN--TCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSIDN 68


>gi|262171714|ref|ZP_06039392.1| NrfC protein [Vibrio mimicus MB-451]
 gi|261892790|gb|EEY38776.1| NrfC protein [Vibrio mimicus MB-451]
          Length = 212

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           +C  C++  CV VCP    Y+ E    +   +  C+ CG C   CP       
Sbjct: 82  SCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACPYQVRFFH 134


>gi|239904886|ref|YP_002951624.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
 gi|239794749|dbj|BAH73738.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
          Length = 490

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           TY +    C  C  T C +VCPV+C    +     I   +CI CG C  +C  D+I   
Sbjct: 434 TYTINPAKCTGC--TLCTKVCPVECISGTKKQPHVIDASKCIKCGACYDKCKFDSIIKM 490


>gi|182415742|ref|YP_001820808.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Opitutus terrae PB90-1]
 gi|177842956|gb|ACB77208.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Opitutus terrae PB90-1]
          Length = 1125

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C+ C+   C  VCPV+     E  L A+  + CI    C   CP    + +     +
Sbjct: 890 ACVQCELAPCETVCPVNATVHDEEGLNAMAYNRCIGTRYCANNCPYKVRRFNFFDYNQ 947



 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 16/78 (20%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVD---AIKPDTE---PGLELWLKINSEYATQWPNITT 82
            +  ++I  + CI C  C   C  +    I    +        W++++  Y+        
Sbjct: 810 HQWGMSIDLNTCIGCNACVVACQAENNIPIVGRDQVLRGREMHWIRLDRYYSDGN----- 864

Query: 83  KKESLPSAAKMDGVKQKY 100
                  A    G   K+
Sbjct: 865 -----ADAEAFGGEGNKH 877


>gi|126460291|ref|YP_001056569.1| putative ATPase RIL [Pyrobaculum calidifontis JCM 11548]
 gi|126250012|gb|ABO09103.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548]
          Length = 589

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPVD------CFYEGENFLAIHPDECIDCGVCEPECPVD 53
            V  + C    C H +CV+ CPV+         E      I    CI CG+C  +CP D
Sbjct: 5  AVVDRDACQPRKCGH-ECVKYCPVNKSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFD 63

Query: 54 AI 55
          AI
Sbjct: 64 AI 65


>gi|126699405|ref|YP_001088302.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile 630]
 gi|255100934|ref|ZP_05329911.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-63q42]
 gi|255306823|ref|ZP_05350994.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile ATCC 43255]
 gi|115250842|emb|CAJ68666.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile]
          Length = 315

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +E C+ CK    VEVCPV       +  L I  + C +CG C   C  D+I
Sbjct: 168 DSELCVGCKKCAVVEVCPVKAAKLTDKGKLEIDSNLCNNCGKCIESCNFDSI 219


>gi|20808132|ref|NP_623303.1| Fe-S-cluster-containing hydrogenase components 1
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516720|gb|AAM24907.1| Fe-S-cluster-containing hydrogenase components 1
           [Thermoanaerobacter tengcongensis MB4]
          Length = 161

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   CV VCP    +  E+ L  ++  +CI C +C   CP  A+    
Sbjct: 61  CRHCEDAPCVAVCPTGAMHRREDGLNLVNLPQCIGCWMCALACPFGAVSRGD 112


>gi|113968836|ref|YP_732629.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113883520|gb|ABI37572.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 235

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +       + +   +C  C  C   CP +A  I  DT+   
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDTDVAD 164

Query: 64  ELWLKINSEYAT 75
                +NS+ A 
Sbjct: 165 NCDFCLNSKLAK 176


>gi|326519326|dbj|BAJ96662.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 223

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 121 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  + +  
Sbjct: 179 VEGP----------NFEFSTETHEELLYDKEKLLENGDRWETE 211


>gi|325105337|ref|YP_004274991.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Pedobacter saltans DSM 12145]
 gi|324974185|gb|ADY53169.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Pedobacter saltans DSM 12145]
          Length = 995

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +         
Sbjct: 820 CQHCDHAPCETVCPVLATVHSSDGLNHMAYNRCVGTRYCANNCPFKVRRFNWFNYWNDSR 879

Query: 68  K---INSEYAT--QWPNITTK 83
               +N+E+      P++TT+
Sbjct: 880 FDNYLNNEFTQLVLNPDVTTR 900


>gi|307596381|ref|YP_003902698.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
           distributa DSM 14429]
 gi|307551582|gb|ADN51647.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
           distributa DSM 14429]
          Length = 1129

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C  C    C++ CP           +   P  C  CG C  ECP DAI  D      + 
Sbjct: 920 KCTKC--GLCIKACPYGAIRGVPGKWIEHIPAACQGCGACVAECPQDAITLDAMSDDVIL 977

Query: 67  LKINSEYAT 75
            ++ +  A 
Sbjct: 978 AQVEAALAE 986



 Score = 34.2 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL 33
           VT++C  C    C +VCPV    E E  +
Sbjct: 101 VTDDCTKC--GQCEDVCPVIVPSEFEAGI 127


>gi|270263102|ref|ZP_06191372.1| hypothetical protein SOD_d01180 [Serratia odorifera 4Rx13]
 gi|270042790|gb|EFA15884.1| hypothetical protein SOD_d01180 [Serratia odorifera 4Rx13]
          Length = 198

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCP          + +  + CI C  C   CP  A++  T P +  
Sbjct: 76  CRQCEDAPCANVCPNGAISRQNGMVLVMQERCIGCKTCVVACPYGAMEVITRPVIRQ 132


>gi|258406484|ref|YP_003199226.1| nitroreductase [Desulfohalobium retbaense DSM 5692]
 gi|257798711|gb|ACV69648.1| nitroreductase [Desulfohalobium retbaense DSM 5692]
          Length = 273

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + CI C   +C   CP  C         IH   CI C  C   CP  A+    +   
Sbjct: 6  IDEDRCIQC--GECAADCPAMCISLDNGLPEIHEKRCIRCQHCLAVCPTAALSILDKDPD 63

Query: 64 E 64
          +
Sbjct: 64 D 64


>gi|212691452|ref|ZP_03299580.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855]
 gi|237726262|ref|ZP_04556743.1| ferredoxin [Bacteroides sp. D4]
 gi|212666062|gb|EEB26634.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855]
 gi|229434788|gb|EEO44865.1| ferredoxin [Bacteroides dorei 5_1_36/D4]
          Length = 315

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +  +
Sbjct: 223 SCIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 68  KI 69
           ++
Sbjct: 281 EV 282



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCVEVC  D  +         +  ++C  CG C   CP   I
Sbjct: 145 CLGC--GDCVEVCQFDAIHMNPETGLPEVDEEKCTACGACSKACPRKII 191


>gi|145590743|ref|YP_001152745.1| nitrate reductase, beta subunit [Pyrobaculum arsenaticum DSM 13514]
 gi|145282511|gb|ABP50093.1| respiratory nitrate reductase beta subunit [Pyrobaculum arsenaticum
           DSM 13514]
          Length = 473

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C+  CP    Y+ E    + +  + C     C   CP   +  + +
Sbjct: 172 CNHCLNPSCLAACPRKAIYKREEDGIVLVDQNRCRGYRYCVAACPYKKVYYNWK 225


>gi|32477643|ref|NP_870637.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rhodopirellula baltica SH 1]
 gi|32448197|emb|CAD77714.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rhodopirellula baltica SH 1]
          Length = 1205

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           +V E   C+ C+   C +VCPV    +  E   A+  + CI    C   CP  
Sbjct: 947 IVQEPVTCMHCETAPCEQVCPVAATVHTNEGLNAMTYNRCIGTRYCANNCPYK 999


>gi|331698077|ref|YP_004334316.1| nitrate reductase subunit beta [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952766|gb|AEA26463.1| nitrate reductase, beta subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 580

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 186 CEHCLNPSCVASCPSGAMYKRTEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 236


>gi|323478595|gb|ADX83833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 627

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCAFACPVGITDMRGWFIKKGEFKSFKCVGIGECVNACPYDNIYFYDVRQWIK 622


>gi|323475832|gb|ADX86438.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
          Length = 627

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCAFACPVGITDMRGWFIKKGEFKSFKCVGIGECVNACPYDNIYFYDVRQWIK 622


>gi|300855183|ref|YP_003780167.1| Fe-S-cluster-containing hydrogenase component [Clostridium
           ljungdahlii DSM 13528]
 gi|300435298|gb|ADK15065.1| Fe-S-cluster-containing hydrogenase component [Clostridium
           ljungdahlii DSM 13528]
          Length = 190

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V   C  C  + C  VCPV      EN + +  + CI C +C   CP  A+  
Sbjct: 55  VPIQCRQCDDSPCANVCPVGAIVHQENKVVVKTELCIGCKICMLACPFGAMDM 107


>gi|238620977|ref|YP_002915803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|238382047|gb|ACR43135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 627

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCAFACPVGITDMRGWFIKKGEFKSFKCVGIGECVNACPYDNIYFYDVRQWIK 622


>gi|296129608|ref|YP_003636858.1| nitrate reductase, beta subunit [Cellulomonas flavigena DSM 20109]
 gi|296021423|gb|ADG74659.1| nitrate reductase, beta subunit [Cellulomonas flavigena DSM 20109]
          Length = 566

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRVEDGIVLVDQDKCRGWRMCVTGCPYKKVYF 232


>gi|229585992|ref|YP_002844494.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|228021042|gb|ACP56449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 627

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCAFACPVGITDMRGWFIKKGEFKSFKCVGIGECVNACPYDNIYFYDVRQWIK 622


>gi|229580466|ref|YP_002838866.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284999070|ref|YP_003420838.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|228011182|gb|ACP46944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284446966|gb|ADB88468.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
          Length = 627

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCAFACPVGITDMRGWFIKKGEFKSFKCVGIGECVNACPYDNIYFYDVRQWIK 622


>gi|227828785|ref|YP_002830565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|227460581|gb|ACP39267.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
          Length = 627

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCAFACPVGITDMRGWFIKKGEFKSFKCVGIGECVNACPYDNIYFYDVRQWIK 622


>gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
 gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
          Length = 589

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +  E C+ C  T C   CPV C       +  I   +CI CG C+  C  +A+  +
Sbjct: 536 INPEKCVGC--TLCARKCPVSCISGRTKQVHKIDQSKCIKCGACQNVCKFNAVIKE 589


>gi|229580884|ref|YP_002839283.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|228011600|gb|ACP47361.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
          Length = 627

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP D I          
Sbjct: 563 CVNCKTVDCAFACPVGITDMRGWFIKKGEFKSFKCVGIGECVNACPYDNIYFYDVRQWIK 622


>gi|62897789|dbj|BAD96834.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) variant [Homo sapiens]
          Length = 210

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|304391410|ref|ZP_07373352.1| NADH-quinone oxidoreductase subunit i [Ahrensia sp. R2A130]
 gi|303295639|gb|EFL89997.1| NADH-quinone oxidoreductase subunit i [Ahrensia sp. R2A130]
          Length = 163

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L + A+ +  
Sbjct: 118 IV--EGPNFEFSTETREEL------YYDKDKLLENGARWERE 151


>gi|253682180|ref|ZP_04862977.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum D str. 1873]
 gi|253561892|gb|EES91344.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum D str. 1873]
          Length = 315

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           CI C    CV  CPV       +   I+ D  CI CG C+  C   AI
Sbjct: 64  CINC--GACVSACPVGIHTIYNSKHVINRDIDCIGCGKCKEVCLKSAI 109


>gi|257064545|ref|YP_003144217.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792198|gb|ACV22868.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 173

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVD 53
            C  C    CV VCPV      E +  +   P+ CI C  C+  CP D
Sbjct: 53  ACNHCTAPACVAVCPVGALTKREDDGIVVHDPEICIGCLSCQQACPYD 100


>gi|258653819|ref|YP_003202975.1| nitrate reductase subunit beta [Nakamurella multipartita DSM 44233]
 gi|258557044|gb|ACV79986.1| nitrate reductase, beta subunit [Nakamurella multipartita DSM
           44233]
          Length = 561

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDKCRGWRMCVSGCPYKKVYF 232


>gi|237729667|ref|ZP_04560148.1| electron transporter HydN [Citrobacter sp. 30_2]
 gi|226908273|gb|EEH94191.1| electron transporter HydN [Citrobacter sp. 30_2]
          Length = 181

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|195108159|ref|XP_001998660.1| GI24093 [Drosophila mojavensis]
 gi|193915254|gb|EDW14121.1| GI24093 [Drosophila mojavensis]
          Length = 216

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 114 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 171

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 172 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 204


>gi|123142348|sp|Q0QLF7|HNR_EUBBA RecName: Full=6-hydroxynicotinate reductase
 gi|86278261|gb|ABC88393.1| 6-hydroxynicotinate reductase [Eubacterium barkeri]
          Length = 499

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M  +  E C  C+   CV+ CPV   Y   + +  +    ++C++CG+C+  C   AI+ 
Sbjct: 1  MFKIDEEKCKKCRM--CVKECPVHAVYYEKKDKGAIVEITEKCVECGICKRVCKFGAIEN 58

Query: 58 DTE 60
          D  
Sbjct: 59 DAP 61


>gi|89902847|ref|YP_525318.1| hydrogenase 2 protein HybA [Rhodoferax ferrireducens T118]
 gi|89347584|gb|ABD71787.1| Twin-arginine translocation pathway signal [Rhodoferax
           ferrireducens T118]
          Length = 331

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV  CPV    +      +A  P  C+ C  C   CP    K   +     
Sbjct: 114 SCMHCADPSCVSACPVSAMTKDPATGIVAYDPGACVGCRYCVVACPFGIPKYQYDSPTGK 173


>gi|26247923|ref|NP_753963.1| hypothetical protein c2068 [Escherichia coli CFT073]
 gi|110641795|ref|YP_669525.1| hypothetical protein ECP_1621 [Escherichia coli 536]
 gi|191173451|ref|ZP_03034979.1| iron-sulfur cluster-binding protein [Escherichia coli F11]
 gi|215486849|ref|YP_002329280.1| hypothetical protein E2348C_1759 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218689616|ref|YP_002397828.1| hypothetical protein ECED1_1873 [Escherichia coli ED1a]
 gi|227885910|ref|ZP_04003715.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|300987853|ref|ZP_07178404.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300995332|ref|ZP_07181029.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301050997|ref|ZP_07197842.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|306815073|ref|ZP_07449229.1| hypothetical protein ECNC101_23563 [Escherichia coli NC101]
 gi|312966827|ref|ZP_07781045.1| 4Fe-4S binding domain protein [Escherichia coli 2362-75]
 gi|26108326|gb|AAN80528.1|AE016761_103 Putative ferredoxin-like protein ydhY [Escherichia coli CFT073]
 gi|110343387|gb|ABG69624.1| putative ferredoxin-like protein YdhY [Escherichia coli 536]
 gi|190906293|gb|EDV65904.1| iron-sulfur cluster-binding protein [Escherichia coli F11]
 gi|215264921|emb|CAS09307.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|218427180|emb|CAR07969.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli ED1a]
 gi|222033430|emb|CAP76171.1| Uncharacterized ferredoxin-like protein ydhy [Escherichia coli
           LF82]
 gi|227837089|gb|EEJ47555.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|300297330|gb|EFJ53715.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300306001|gb|EFJ60521.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300406165|gb|EFJ89703.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|305851721|gb|EFM52174.1| hypothetical protein ECNC101_23563 [Escherichia coli NC101]
 gi|307553695|gb|ADN46470.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli ABU
           83972]
 gi|312288291|gb|EFR16193.1| 4Fe-4S binding domain protein [Escherichia coli 2362-75]
 gi|312946274|gb|ADR27101.1| hypothetical protein NRG857_08385 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315290552|gb|EFU49926.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|315299685|gb|EFU58927.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|320195430|gb|EFW70055.1| putative oxidoreductase, Fe-S subunit [Escherichia coli WV_060327]
 gi|324007025|gb|EGB76244.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
 gi|324011430|gb|EGB80649.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
          Length = 208

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|282855938|ref|ZP_06265229.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
 gi|282586157|gb|EFB91434.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
          Length = 596

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK       CP   F + E  ++I   +C+ C VC   CPV AI
Sbjct: 543 EKCIGCKKCL-QTGCPALSFDKYERKVSIDRMQCVGCTVCAQVCPVKAI 590


>gi|317152504|ref|YP_004120552.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316942755|gb|ADU61806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 302

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
              V   C+ C+   CV  C      + EN       D+CI C  C   CP +    +  
Sbjct: 105 PTYVKVQCMHCQDPACVSACITGALTKKENGTVHYDVDKCIGCRYCMAACPFEIPAYEYH 164

Query: 61  PG 62
             
Sbjct: 165 EP 166


>gi|169351160|ref|ZP_02868098.1| hypothetical protein CLOSPI_01939 [Clostridium spiroforme DSM 1552]
 gi|169292222|gb|EDS74355.1| hypothetical protein CLOSPI_01939 [Clostridium spiroforme DSM 1552]
          Length = 770

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 7   ENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C  C    C  +CP  C       EG  +  I   +CI CG C+ +CPV     +   
Sbjct: 399 DQCTGC--GACSVICPKQCISMKKNDEGFLYPVIDYHKCIHCGNCQRKCPVKNKYKEDNK 456

Query: 62  GLELWLKINSE 72
             E +  +N +
Sbjct: 457 EPETYACMNKD 467


>gi|126465150|ref|YP_001040259.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           marinus F1]
 gi|126013973|gb|ABN69351.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           marinus F1]
          Length = 406

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + CI C    C +VC  +        EG+    ++ D C  CG+C   CP  AI 
Sbjct: 343 PVVDPKKCIGC--GFCEQVCDYNAVKVVPNEEGKRIAQVNYDLCYGCGLCTSVCPTRAIH 400

Query: 57  PDTE 60
            + E
Sbjct: 401 FEEE 404



 Score = 35.0 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNIT 81
             + P +CI CG CE  C  +A+K       +   ++N +        T
Sbjct: 343 PVVDPKKCIGCGFCEQVCDYNAVKVVPNEEGKRIAQVNYDLCYGCGLCT 391


>gi|121535967|ref|ZP_01667761.1| aldo/keto reductase [Thermosinus carboxydivorans Nor1]
 gi|121305459|gb|EAX46407.1| aldo/keto reductase [Thermosinus carboxydivorans Nor1]
          Length = 315

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V + C+ C    C   CP+      +    +   +C+ CG C   CP   +
Sbjct: 264 VEDWCVGC--GRCAGKCPMQAITIVDGMAVVDHSKCVLCGYCGAHCPEFCL 312


>gi|89901118|ref|YP_523589.1| RnfABCDGE type electron transport complex subunit B [Rhodoferax
           ferrireducens T118]
 gi|89345855|gb|ABD70058.1| electron transport complex, RnfABCDGE type, B subunit [Rhodoferax
           ferrireducens T118]
          Length = 232

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            ++  + CI C  T C+E CP D      +    +    C  C +C P CPVD IK +
Sbjct: 77  AFIDEDWCIGC--TLCIEACPTDAILGSNKLMHTVIEAYCTGCELCLPVCPVDCIKLE 132


>gi|78223461|ref|YP_385208.1| electron transfer flavoprotein subunit alpha [Geobacter
          metallireducens GS-15]
 gi|78194716|gb|ABB32483.1| Electron transfer flavoprotein, alpha subunit [Geobacter
          metallireducens GS-15]
          Length = 442

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +   CI C    C  VCPV+C    +     ++  +CI C  C   CP  A++    P  
Sbjct: 18 IAGACIAC-GARCQSVCPVNCVDMNDAGEPVVNSAKCIGCQKCVKICPATALEMYFTPEE 76

Query: 64 ELWLKINSEYATQWPNITTKKES 86
             L    E A Q   +  + + 
Sbjct: 77 RKILD---ELAAQGDPVEEEIDP 96


>gi|39934299|ref|NP_946575.1| putative indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Rhodopseudomonas palustris CGA009]
 gi|39648147|emb|CAE26667.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris CGA009]
          Length = 608

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++T  C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 545 IITSQCTAC--QSCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 602

Query: 59  TEPGLE 64
           T    +
Sbjct: 603 TPAVTQ 608


>gi|127510995|ref|YP_001092192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636290|gb|ABO21933.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 196

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP +CFY+ E+ L   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|194336423|ref|YP_002018217.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308900|gb|ACF43600.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 199

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++T C+  CP       ++ +  ++ D CI C  C   CP DA        ++   
Sbjct: 60  CMHCENTPCLSACPTGATSITKDGIVLVNYDRCIGCYACCIACPYDARYAYESEDVDTEK 119

Query: 68  KINSEYATQ 76
           ++  + +T 
Sbjct: 120 ELYGDLSTH 128


>gi|323251808|gb|EGA35672.1| respiratory nitrate reductase 1 subunit beta [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
          Length = 259

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 184 CEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWK 237


>gi|319944665|ref|ZP_08018932.1| respiratory nitrate reductase, beta subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742104|gb|EFV94524.1| respiratory nitrate reductase, beta subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 522

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPTCVASCPSGSVYKREEDGIVLVDQDKCRGWRMCISGCPYKKIYFN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|237712108|ref|ZP_04542589.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|229453429|gb|EEO59150.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
          Length = 315

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +  +
Sbjct: 223 SCIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 68  KI 69
           ++
Sbjct: 281 EV 282



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCVE C  D  +         +  ++C  CG C   CP   I
Sbjct: 145 CLGC--GDCVEACQFDAIHMNPETGLPEVDEEKCTACGACSKACPRKII 191


>gi|225017215|ref|ZP_03706407.1| hypothetical protein CLOSTMETH_01141 [Clostridium methylpentosum
          DSM 5476]
 gi|224949990|gb|EEG31199.1| hypothetical protein CLOSTMETH_01141 [Clostridium methylpentosum
          DSM 5476]
          Length = 57

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y++ ++CI C    C   CPV+   EG+    I  D CI+CG C   CPV+A  P+
Sbjct: 1  MAYIINDDCISC--GACEAECPVNAITEGDGKYCIDKDTCIECGACAGVCPVNAPNPE 56


>gi|7321321|emb|CAB82185.1| nitrate reductase beta-subunit [Serratia proteamaculans]
          Length = 306

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  + +
Sbjct: 168 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWK 221


>gi|78221551|ref|YP_383298.1| respiratory nitrate reductase beta subunit [Geobacter
           metallireducens GS-15]
 gi|78192806|gb|ABB30573.1| respiratory nitrate reductase beta subunit [Geobacter
           metallireducens GS-15]
          Length = 484

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C     C   CP   +  + 
Sbjct: 180 CNHCANPACVASCPSRAIYKRGEDGVVLVDQEVCKGWRFCTSACPYKKVYFNW 232


>gi|116748266|ref|YP_844953.1| response regulator receiver modulated FAD-dependent pyridine
           nucleotide-disulfide oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697330|gb|ABK16518.1| response regulator receiver modulated FAD-dependent pyridine
           nucleotide-disulphide oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1139

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 20/75 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGV 45
           +  E C  C   +C  VCPV+   E                        I  D C  CG 
Sbjct: 113 IDPERCNGC--GECTRVCPVEVPDEFNAGLATRKAVYLPVPHNLPNSYVIDTDACNHCGA 170

Query: 46  CEPECPVDAIKPDTE 60
           C+  CP  AI  + E
Sbjct: 171 CQNACPTGAIDLNLE 185



 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
            C LC+   CV  CP    +  E E  + +    C  CG C   CP  A
Sbjct: 1074 CSLCE--RCVVACPFHARWYDEEEERIVVDEFVCQGCGACSAACPNGA 1119


>gi|332878346|ref|ZP_08446072.1| Tat pathway signal sequence domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332683797|gb|EGJ56668.1| Tat pathway signal sequence domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 935

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   C  VCPV    +  +    +  + C+    C   CP    + +     +
Sbjct: 756 CQHCEKAPCETVCPVGATVHGAQGQNQMAYNRCVGTRYCANNCPYKVRRFNWFDYSQ 812


>gi|264676201|ref|YP_003276107.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni CNB-2]
 gi|262206713|gb|ACY30811.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni CNB-2]
          Length = 433

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I  
Sbjct: 17 IDPEICIRCN--TCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSIDN 68


>gi|326202931|ref|ZP_08192798.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325987008|gb|EGD47837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 56

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +++ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA
Sbjct: 1  MAYSISDACISC--GACESECPVSCITAGDSVYVIDEDTCIECGACANVCPVDA 52


>gi|255009761|ref|ZP_05281887.1| ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 56

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+   +I P++C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVGAISEGD-IYSIDPEQCTDCGTCADVCPSEAIHP 54


>gi|221633945|ref|YP_002523171.1| putative [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit
           [Thermomicrobium roseum DSM 5159]
 gi|221157195|gb|ACM06322.1| putative [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 282

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPV 52
           ++ C  C H  C+E CP       E   + I  D C  CG C P CP 
Sbjct: 96  SDVCKHCVHAGCMEACPTGAIIRTEFDTVVIQQDICNGCGYCVPACPF 143


>gi|150402670|ref|YP_001329964.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033700|gb|ABR65813.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 138

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +   C+ C+   C+  CP D   + ++ + I P++CI C +C   CPV AI+ D
Sbjct: 31 IPIRCMHCEDAPCLNACPEDAIKKIDDKVIIEPEKCIGCALCAEVCPVGAIQID 84


>gi|77463081|ref|YP_352585.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides 2.4.1]
 gi|126461953|ref|YP_001043067.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17029]
 gi|221638937|ref|YP_002525199.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides KD131]
 gi|332557954|ref|ZP_08412276.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
 gi|115502510|sp|Q3J3F0|NUOI1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|156632691|sp|A3PIX9|NUOI1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|77387499|gb|ABA78684.1| Subunit of NADH-ubiquinone oxidoreductase (Complex I) that contains
           2 Fe-S centers [Rhodobacter sphaeroides 2.4.1]
 gi|126103617|gb|ABN76295.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159718|gb|ACM00698.1| NADH-quinone oxidoreductase subunit I 1 [Rhodobacter sphaeroides
           KD131]
 gi|332275666|gb|EGJ20981.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
          Length = 167

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 65  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 122

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K   L + A+ +  
Sbjct: 123 V--EGPNFEFSTETREELF------YNKDRLLENGARWEAE 155


>gi|261403601|ref|YP_003247825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370594|gb|ACX73343.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 391

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT++C+ C    CV  CPV      +    I   +C+ C +C   CP +AI 
Sbjct: 134 VVTDDCVGC--GVCVPECPVGAITLEDGKAVIDKSKCVYCSICAQTCPWNAIF 184



 Score = 33.8 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E C+ C    CVE+CP D     E N + + P  C  C +C   CPV+A+  +
Sbjct: 202 VDAEKCVYCLK--CVEICPGDMIKVDENNMIVVPPKSCPACKLCVNTCPVNALDLE 255


>gi|153814772|ref|ZP_01967440.1| hypothetical protein RUMTOR_00987 [Ruminococcus torques ATCC 27756]
 gi|317501321|ref|ZP_07959524.1| hypothetical protein HMPREF1026_01467 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088354|ref|ZP_08337273.1| hypothetical protein HMPREF1025_00856 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847803|gb|EDK24721.1| hypothetical protein RUMTOR_00987 [Ruminococcus torques ATCC 27756]
 gi|316897285|gb|EFV19353.1| hypothetical protein HMPREF1026_01467 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408598|gb|EGG88064.1| hypothetical protein HMPREF1025_00856 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 204

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + + CI CK   C  VCP  C       + I+ + C+ CG C   CP   I
Sbjct: 148 YFIGKECIGCKL--CYSVCPQKCIDISSVPVTINQNHCLHCGRCAEICPKQCI 198


>gi|170729126|ref|YP_001763152.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814473|gb|ACA89057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 189

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP +CFY+ E+ L   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|158319129|ref|YP_001511636.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139328|gb|ABW17640.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
          Length = 592

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C++  CP   F +    + I   +C+ C VC   CPV AI
Sbjct: 540 EKCIGCKM--CIKTGCPALRFDKETKKVTIDKTQCVGCTVCLQVCPVKAI 587


>gi|317484980|ref|ZP_07943864.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316923785|gb|EFV44987.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 622

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C+ C    CV+   CP   F   +  ++I P +CI C VC   CP +AI
Sbjct: 569 IDGERCVNC--HTCVDTFGCP--AFQLRDGKVSIDPVQCIGCAVCAQVCPNNAI 618


>gi|258624435|ref|ZP_05719382.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM603]
 gi|258583282|gb|EEW08084.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM603]
          Length = 212

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           +C  C++  CV VCP    Y+ E    +   +  C+ CG C   CP       
Sbjct: 82  SCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCLAACPYQVRFFH 134


>gi|261402831|ref|YP_003247055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369824|gb|ACX72573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 391

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT++C+ C    CV  CPV      +    I   +C+ C +C   CP +AI 
Sbjct: 134 VVTDDCVGC--GVCVPECPVGAITLEDGKAVIDKSKCVYCSICAQTCPWNAIF 184



 Score = 33.8 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E C+ C    CVE+CP D     E N + + P  C  C +C   CPV+A+  +
Sbjct: 202 VDAEKCVYCLK--CVEICPGDMIKVDENNMIVVPPKSCPACKLCVNTCPVNALDLE 255


>gi|218779007|ref|YP_002430325.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760391|gb|ACL02857.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 362

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  + CI C   +C++ C V       +   I  + CI CG C   CP +AI  
Sbjct: 291 IDGDLCIGC--GECLDRCQVAAISLDGDAAVIAGEYCIGCGNCATVCPQEAISM 342


>gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 624

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +    C  C    C +VCPV     + +    I  ++CI CG C   CP  AIK D
Sbjct: 571 IDPSMCKGCSK--CSKVCPVGAISGKIKEPFVIDQNKCIKCGACLETCPFKAIKED 624


>gi|82703818|ref|YP_413384.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|82411883|gb|ABB75992.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira
           multiformis ATCC 25196]
          Length = 259

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C  T C++VCPVD           +   EC  C +C   CPVD I+    
Sbjct: 79  ALIDEQACIGC--TVCIQVCPVDAIVGAARQMHTVISGECTGCSLCLEPCPVDCIQMVLP 136

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  +I ++ A      T       +  K++ V++K 
Sbjct: 137 KEHSPCAEIGAQIA-----WTEPDHQDFAVEKVERVEKKK 171


>gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
 gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
          Length = 597

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C   CP +      G+    I  ++CI CG C   C    I
Sbjct: 543 IDEDKCRKC--GLCARQCPANAIDGELGKVPYRIDQNKCIKCGNCMTACHFGVI 594


>gi|291523914|emb|CBK89501.1| Uncharacterized conserved protein [Eubacterium rectale DSM 17629]
 gi|291528625|emb|CBK94211.1| Uncharacterized conserved protein [Eubacterium rectale M104/1]
          Length = 202

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V ++CI CK   C  VCP  C       + I+ + C+ CG C   CP   I
Sbjct: 148 YFVGKDCIGCKL--CYSVCPQKCIDISSVPVTINQNHCLHCGRCAEICPKQCI 198


>gi|260448069|gb|ACX38491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|315137485|dbj|BAJ44644.1| conserved hypothetical protein [Escherichia coli DH1]
          Length = 162

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|238749713|ref|ZP_04611218.1| Protein nrfC [Yersinia rohdei ATCC 43380]
 gi|238712368|gb|EEQ04581.1| Protein nrfC [Yersinia rohdei ATCC 43380]
          Length = 212

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    Y  +    + ++PD C+ C  C   CP  
Sbjct: 80  SCQHCDRAPCVDVCPTGASYRDKATGIVDVNPDLCVGCQYCIAACPYR 127


>gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
 gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
          Length = 659

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           TY +  + C  C  T C   CPV C          I    CI CG C   C   A+
Sbjct: 603 TYRIDADKCRGC--TLCARRCPVGCITGKPREAYAIDETRCIKCGACLECCKFGAV 656


>gi|4505371|ref|NP_002487.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Homo sapiens]
 gi|115392037|ref|NP_001065248.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Pan troglodytes]
 gi|2499325|sp|O00217|NDUS8_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; AltName: Full=TYKY
           subunit; Flags: Precursor
 gi|115502491|sp|Q0MQI3|NDUS8_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|269969396|sp|P0CB98|NDUS8_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|1935056|gb|AAB51776.1| mitochondrial NADH dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa
           subunit precursor [Homo sapiens]
 gi|3523123|gb|AAC34273.1| NADH dehydrogenase-ubiquinone Fe-S protein 8 23 kDa subunit [Homo
           sapiens]
 gi|110645822|gb|AAI19755.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Homo sapiens]
 gi|111661817|gb|ABH12160.1| mitochondrial complex I subunit NDUFS8 [Pan troglodytes]
 gi|111661821|gb|ABH12162.1| mitochondrial complex I subunit NDUFS8 [Pongo pygmaeus]
 gi|119595093|gb|EAW74687.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_c [Homo
           sapiens]
 gi|189069467|dbj|BAG37133.1| unnamed protein product [Homo sapiens]
          Length = 210

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|257064441|ref|YP_003144113.1| glycyl-radical enzyme activator family protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256792094|gb|ACV22764.1| glycyl-radical enzyme activator family protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 311

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           NCI C   +CV VCPV       +  + I    C  C  C  +C   A++   +P     
Sbjct: 58  NCIGC--GECVNVCPVGAIRMDSDEGVVIDRASCTLCLACADQCYAKALRAVAKPMTIDE 115

Query: 67  LKINSE 72
           +  ++E
Sbjct: 116 ILADAE 121


>gi|218705172|ref|YP_002412691.1| hypothetical protein ECUMN_1963 [Escherichia coli UMN026]
 gi|293405172|ref|ZP_06649164.1| hypothetical protein ECGG_00509 [Escherichia coli FVEC1412]
 gi|298380815|ref|ZP_06990414.1| hypothetical protein ECFG_00523 [Escherichia coli FVEC1302]
 gi|300901517|ref|ZP_07119588.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|331663151|ref|ZP_08364061.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA143]
 gi|218432269|emb|CAR13159.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli UMN026]
 gi|291427380|gb|EFF00407.1| hypothetical protein ECGG_00509 [Escherichia coli FVEC1412]
 gi|298278257|gb|EFI19771.1| hypothetical protein ECFG_00523 [Escherichia coli FVEC1302]
 gi|300355047|gb|EFJ70917.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|331058950|gb|EGI30927.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA143]
          Length = 208

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|198243858|ref|YP_002216546.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197938374|gb|ACH75707.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 653

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGVIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|83592898|ref|YP_426650.1| NADH dehydrogenase subunit I [Rhodospirillum rubrum ATCC 11170]
 gi|115502542|sp|Q2RU32|NUOI_RHORT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|83575812|gb|ABC22363.1| NADH-quinone oxidoreductase, chain I [Rhodospirillum rubrum ATCC
           11170]
          Length = 162

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG CE  CPVDAI
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K + L +  + +  
Sbjct: 118 V--EGPNFEFAAETREEL------LYNKAKLLANGDRWEPE 150


>gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 600

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  E CI C    C   CPV     E +   +I    CI CG C  +C   A++
Sbjct: 547 IDREKCIGC--GICARSCPVGAIDGEKKQPHSIDIKACIKCGNCLQKCKFGAVQ 598



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           + CP            I  ++CI CG+C   CPV AI  D E      + I +
Sbjct: 532 KRCPAGVC-PNLLVYTIDREKCIGCGICARSCPVGAI--DGEKKQPHSIDIKA 581


>gi|15802086|ref|NP_288108.1| hypothetical protein Z2702 [Escherichia coli O157:H7 EDL933]
 gi|15831635|ref|NP_310408.1| hypothetical protein ECs2381 [Escherichia coli O157:H7 str. Sakai]
 gi|16129630|ref|NP_416189.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|24113062|ref|NP_707572.1| hypothetical protein SF1702 [Shigella flexneri 2a str. 301]
 gi|30063186|ref|NP_837357.1| hypothetical protein S1834 [Shigella flexneri 2a str. 2457T]
 gi|74312001|ref|YP_310420.1| hypothetical protein SSON_1482 [Shigella sonnei Ss046]
 gi|89108514|ref|AP_002294.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. W3110]
 gi|110805650|ref|YP_689170.1| hypothetical protein SFV_1696 [Shigella flexneri 5 str. 8401]
 gi|157161139|ref|YP_001458457.1| hypothetical protein EcHS_A1755 [Escherichia coli HS]
 gi|168752360|ref|ZP_02777382.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168765131|ref|ZP_02790138.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771662|ref|ZP_02796669.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168778033|ref|ZP_02803040.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783947|ref|ZP_02808954.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790500|ref|ZP_02815507.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168802699|ref|ZP_02827706.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC508]
 gi|170019976|ref|YP_001724930.1| hypothetical protein EcolC_1957 [Escherichia coli ATCC 8739]
 gi|170081334|ref|YP_001730654.1| 4Fe-4S ferridoxin-type protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170680484|ref|YP_001743581.1| hypothetical protein EcSMS35_1523 [Escherichia coli SMS-3-5]
 gi|188493243|ref|ZP_03000513.1| iron-sulfur cluster-binding protein [Escherichia coli 53638]
 gi|191169564|ref|ZP_03031289.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
 gi|193064913|ref|ZP_03045989.1| iron-sulfur cluster-binding protein [Escherichia coli E22]
 gi|193071598|ref|ZP_03052505.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|194440079|ref|ZP_03072134.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|195940385|ref|ZP_03085767.1| hypothetical protein EscherichcoliO157_28980 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810434|ref|ZP_03252310.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817059|ref|ZP_03258179.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820861|ref|ZP_03261181.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400156|ref|YP_002270742.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209918987|ref|YP_002293071.1| hypothetical protein ECSE_1796 [Escherichia coli SE11]
 gi|217328764|ref|ZP_03444845.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554240|ref|YP_002387153.1| hypothetical protein ECIAI1_1725 [Escherichia coli IAI1]
 gi|218695235|ref|YP_002402902.1| hypothetical protein EC55989_1841 [Escherichia coli 55989]
 gi|238900889|ref|YP_002926685.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli BW2952]
 gi|253773369|ref|YP_003036200.1| hypothetical protein ECBD_1971 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161735|ref|YP_003044843.1| hypothetical protein ECB_01643 [Escherichia coli B str. REL606]
 gi|254793291|ref|YP_003078128.1| hypothetical protein ECSP_2241 [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018132|ref|ZP_05431997.1| hypothetical protein ShiD9_04403 [Shigella sp. D9]
 gi|256022663|ref|ZP_05436528.1| hypothetical protein E4_04769 [Escherichia sp. 4_1_40B]
 gi|260843980|ref|YP_003221758.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O103:H2
           str. 12009]
 gi|260855498|ref|YP_003229389.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O26:H11
           str. 11368]
 gi|260868165|ref|YP_003234567.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O111:H-
           str. 11128]
 gi|261227881|ref|ZP_05942162.1| hypothetical protein EscherichiacoliO157_25232 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258385|ref|ZP_05950918.1| hypothetical protein EscherichiacoliO157EcO_21542 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282804|ref|YP_003499622.1| hypothetical protein G2583_2069 [Escherichia coli O55:H7 str.
           CB9615]
 gi|293409986|ref|ZP_06653562.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414990|ref|ZP_06657633.1| ferredoxin-like protein ydhY [Escherichia coli B185]
 gi|293446048|ref|ZP_06662470.1| ferredoxin-like protein ydhY [Escherichia coli B088]
 gi|297521080|ref|ZP_06939466.1| hypothetical protein EcolOP_25827 [Escherichia coli OP50]
 gi|300820064|ref|ZP_07100240.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300918042|ref|ZP_07134664.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300939005|ref|ZP_07153702.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300958551|ref|ZP_07170683.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301026858|ref|ZP_07190258.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|307138332|ref|ZP_07497688.1| hypothetical protein EcolH7_09401 [Escherichia coli H736]
 gi|307310755|ref|ZP_07590401.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|331642271|ref|ZP_08343406.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H736]
 gi|331653072|ref|ZP_08354077.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M718]
 gi|331668357|ref|ZP_08369205.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA271]
 gi|331673233|ref|ZP_08374001.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA280]
 gi|331677544|ref|ZP_08378219.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H591]
 gi|332279177|ref|ZP_08391590.1| conserved hypothetical protein [Shigella sp. D9]
 gi|77416660|sp|P0AAL7|YDHY_ECO57 RecName: Full=Uncharacterized ferredoxin-like protein ydhY
 gi|77416661|sp|P0AAL6|YDHY_ECOLI RecName: Full=Uncharacterized ferredoxin-like protein ydhY
 gi|77416662|sp|P0AAL8|YDHY_SHIFL RecName: Full=Uncharacterized ferredoxin-like protein ydhY
 gi|12515673|gb|AAG56661.1|AE005390_8 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|1549285|gb|AAB47950.1| hypothetical protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1742752|dbj|BAA15444.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str. K12
           substr. W3110]
 gi|1787963|gb|AAC74744.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13361848|dbj|BAB35804.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|24052035|gb|AAN43279.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|30041438|gb|AAP17166.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|73855478|gb|AAZ88185.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|110615198|gb|ABF03865.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|157066819|gb|ABV06074.1| iron-sulfur cluster-binding protein [Escherichia coli HS]
 gi|169754904|gb|ACA77603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|169889169|gb|ACB02876.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170518202|gb|ACB16380.1| iron-sulfur cluster-binding protein [Escherichia coli SMS-3-5]
 gi|187766872|gb|EDU30716.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013783|gb|EDU51905.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188488442|gb|EDU63545.1| iron-sulfur cluster-binding protein [Escherichia coli 53638]
 gi|188998803|gb|EDU67789.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359622|gb|EDU78041.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365013|gb|EDU83429.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370045|gb|EDU88461.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189375377|gb|EDU93793.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC508]
 gi|190900400|gb|EDV60224.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
 gi|192927400|gb|EDV82018.1| iron-sulfur cluster-binding protein [Escherichia coli E22]
 gi|192955096|gb|EDV85592.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|194421001|gb|EDX37033.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|208724950|gb|EDZ74657.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731402|gb|EDZ80091.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740984|gb|EDZ88666.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161556|gb|ACI38989.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209769248|gb|ACI82936.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769250|gb|ACI82937.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769252|gb|ACI82938.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769254|gb|ACI82939.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769256|gb|ACI82940.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209912246|dbj|BAG77320.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11]
 gi|217318111|gb|EEC26538.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351967|emb|CAU97699.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli 55989]
 gi|218361008|emb|CAQ98582.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli IAI1]
 gi|238862105|gb|ACR64103.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli BW2952]
 gi|253324413|gb|ACT29015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973636|gb|ACT39307.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli B str.
           REL606]
 gi|253977831|gb|ACT43501.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli
           BL21(DE3)]
 gi|254592691|gb|ACT72052.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O157:H7
           str. TW14359]
 gi|257754147|dbj|BAI25649.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O26:H11
           str. 11368]
 gi|257759127|dbj|BAI30624.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O103:H2
           str. 12009]
 gi|257764521|dbj|BAI36016.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O111:H-
           str. 11128]
 gi|260449203|gb|ACX39625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|281601109|gb|ADA74093.1| putative ferredoxin-like protein YdhY [Shigella flexneri 2002017]
 gi|284921596|emb|CBG34668.1| putative oxidoreductase Fe-S subunit [Escherichia coli 042]
 gi|290762677|gb|ADD56638.1| Uncharacterized ferredoxin-like protein ydhY [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322878|gb|EFE62306.1| ferredoxin-like protein ydhY [Escherichia coli B088]
 gi|291432638|gb|EFF05617.1| ferredoxin-like protein ydhY [Escherichia coli B185]
 gi|291470454|gb|EFF12938.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300314796|gb|EFJ64580.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300395298|gb|EFJ78836.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300414784|gb|EFJ98094.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300456075|gb|EFK19568.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300527369|gb|EFK48431.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|306908933|gb|EFN39429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309701899|emb|CBJ01211.1| putative oxidoreductase Fe-S subunit [Escherichia coli ETEC H10407]
 gi|313648954|gb|EFS13391.1| 4Fe-4S binding domain protein [Shigella flexneri 2a str. 2457T]
 gi|313848653|emb|CAQ32150.2| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           BL21(DE3)]
 gi|315060979|gb|ADT75306.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli W]
 gi|315136315|dbj|BAJ43474.1| hypothetical protein ECDH1ME8569_1618 [Escherichia coli DH1]
 gi|320188361|gb|EFW63023.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EC1212]
 gi|320197856|gb|EFW72464.1| putative oxidoreductase, Fe-S subunit [Escherichia coli EC4100B]
 gi|320641889|gb|EFX11257.1| hypothetical protein ECO5101_07342 [Escherichia coli O157:H7 str.
           G5101]
 gi|320647345|gb|EFX16153.1| hypothetical protein ECO9389_09078 [Escherichia coli O157:H- str.
           493-89]
 gi|320652639|gb|EFX20908.1| hypothetical protein ECO2687_03570 [Escherichia coli O157:H- str. H
           2687]
 gi|320653024|gb|EFX21220.1| hypothetical protein ECO7815_12500 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658708|gb|EFX26385.1| hypothetical protein ECO5905_08434 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668698|gb|EFX35503.1| hypothetical protein ECOSU61_21183 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152820|gb|EFZ39090.1| 4Fe-4S binding domain protein [Escherichia coli EPECa14]
 gi|323180989|gb|EFZ66527.1| 4Fe-4S binding domain protein [Escherichia coli 1180]
 gi|323186053|gb|EFZ71409.1| 4Fe-4S binding domain protein [Escherichia coli 1357]
 gi|323378449|gb|ADX50717.1| hypothetical protein EKO11_2101 [Escherichia coli KO11]
 gi|323937277|gb|EGB33556.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323940659|gb|EGB36850.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323948031|gb|EGB44023.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|323962165|gb|EGB57760.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323973947|gb|EGB69119.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|324016537|gb|EGB85756.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|324119158|gb|EGC13046.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|326342040|gb|EGD65821.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. 1044]
 gi|326343592|gb|EGD67354.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. 1125]
 gi|331039069|gb|EGI11289.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H736]
 gi|331049170|gb|EGI21242.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M718]
 gi|331063551|gb|EGI35462.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA271]
 gi|331069431|gb|EGI40818.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA280]
 gi|331074004|gb|EGI45324.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H591]
 gi|332101529|gb|EGJ04875.1| conserved hypothetical protein [Shigella sp. D9]
 gi|332756992|gb|EGJ87335.1| 4Fe-4S binding domain protein [Shigella flexneri 4343-70]
 gi|332757758|gb|EGJ88087.1| 4Fe-4S binding domain protein [Shigella flexneri 2747-71]
 gi|332758513|gb|EGJ88834.1| 4Fe-4S binding domain protein [Shigella flexneri K-671]
 gi|333003831|gb|EGK23366.1| 4Fe-4S binding domain protein [Shigella flexneri K-218]
 gi|333017936|gb|EGK37241.1| 4Fe-4S binding domain protein [Shigella flexneri K-304]
          Length = 208

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|299138041|ref|ZP_07031221.1| DMSO reductase anchor subunit (DmsC) [Acidobacterium sp. MP5ACTX8]
 gi|298599971|gb|EFI56129.1| DMSO reductase anchor subunit (DmsC) [Acidobacterium sp. MP5ACTX8]
          Length = 532

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 2   TYVVTEN------CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           TY  T+       C  C   +C++ CPVD + +      +    D CI C  C   CP  
Sbjct: 92  TYPNTDRFYLSMGCNHCLSAECIKGCPVDAYTKDSITGIVLHSADACIGCQYCVWNCPYS 151

Query: 54  AIKPDTE 60
             + + E
Sbjct: 152 VPQFNPE 158



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIKPDT 59
           + CI C++  CV  CP            +   +     +       C   CP  AI+ + 
Sbjct: 136 DACIGCQY--CVWNCPYSVPQFNPERGVVGKCDMCHGRLTDGLEPACVNACPEAAIEIEI 193

Query: 60  EPGLEL 65
              LE 
Sbjct: 194 VDQLEW 199


>gi|288819016|ref|YP_003433364.1| nitrate reductase beta subunit [Hydrogenobacter thermophilus TK-6]
 gi|288788416|dbj|BAI70163.1| nitrate reductase beta subunit [Hydrogenobacter thermophilus TK-6]
 gi|308752601|gb|ADO46084.1| selenate reductase [Hydrogenobacter thermophilus TK-6]
          Length = 369

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           C  C +  CV  CP    Y+ E    + I P+ C     C   CP  
Sbjct: 145 CNHCTYPACVAACPRQAIYKREEDGIVLIDPERCEGYQECVKACPYK 191


>gi|258690616|gb|ACV88070.1| NarH [Halomonas sp. C8]
          Length = 334

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 169 CEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYYNWK 222


>gi|224539450|ref|ZP_03679989.1| hypothetical protein BACCELL_04355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518955|gb|EEF88060.1| hypothetical protein BACCELL_04355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 325

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I     P  + 
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTIIALNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KAE 278



 Score = 36.9 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCVE C  D  +         +   +C  CG C   CP + I
Sbjct: 142 CLGC--GDCVEACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKNII 188


>gi|194434716|ref|ZP_03066969.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
 gi|194417054|gb|EDX33170.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
          Length = 208

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|189485593|ref|YP_001956534.1| hypothetical protein TGRD_590 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287552|dbj|BAG14073.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 378

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + E  C+ C    C   CP +     G  +  I  ++CI C  C   CP  A+K      
Sbjct: 313 INEKICVKC--MLCARACPAEAIRAAGNQYPHIDAEKCISCFCCHEMCPHKAVKFKKSML 370

Query: 63  LELWLKIN 70
            ++++K N
Sbjct: 371 AKIFIKEN 378


>gi|229542881|ref|ZP_04431941.1| nitrate reductase, beta subunit [Bacillus coagulans 36D1]
 gi|229327301|gb|EEN92976.1| nitrate reductase, beta subunit [Bacillus coagulans 36D1]
          Length = 501

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +       
Sbjct: 182 CEHCLNPSCVASCPTGALYKRDEDGIVLVDHEACRGWRFCMNGCPYHKVYYNWNTHKAE 240


>gi|71083590|ref|YP_266309.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91761989|ref|ZP_01263954.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|115502537|sp|Q4FM83|NUOI_PELUB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71062703|gb|AAZ21706.1| NADH Dehydrogenase I Chain I [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717791|gb|EAS84441.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 161

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVDAI
Sbjct: 59  EERCIACKL--CEAVCPAQAITIESSERADGSRKTTRYDIDMMKCIYCGLCEESCPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + + V
Sbjct: 117 VQ--GPNFEFSTETREEL------YYNKEKLLDNGDRWENV 149


>gi|310827887|ref|YP_003960244.1| hypothetical protein ELI_2298 [Eubacterium limosum KIST612]
 gi|308739621|gb|ADO37281.1| conserved domain protein [Eubacterium limosum KIST612]
          Length = 56

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+++  CI C    CV  CPV+   +G++   I+ DEC+DCGVCE  CP  AI  +
Sbjct: 1  MAYIISGECIAC--GGCVTECPVEAISKGDDRYIINADECVDCGVCEETCPTGAIISE 56


>gi|291287581|ref|YP_003504397.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884741|gb|ADD68441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 184

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++T C  VCP    Y  +  +  I    CI C  C   CP DA
Sbjct: 63  CQHCENTPCATVCPTSATYRTDEGVVLIDYKRCIICKACMTACPYDA 109


>gi|198243613|ref|YP_002216814.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938129|gb|ACH75462.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 181

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|152971571|ref|YP_001336680.1| electron transport protein HydN [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896169|ref|YP_002920905.1| electron transport protein HydN [Klebsiella pneumoniae NTUH-K2044]
 gi|150956420|gb|ABR78450.1| electron transport protein (formate to hydrogen), Fe-S center
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548487|dbj|BAH64838.1| electron transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 175

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P +  
Sbjct: 57  ACRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRH 114


>gi|148285163|ref|YP_001249253.1| NADH dehydrogenase subunit I [Orientia tsutsugamushi str. Boryong]
 gi|189184497|ref|YP_001938282.1| NADH dehydrogenase subunit I [Orientia tsutsugamushi str. Ikeda]
 gi|156633535|sp|A5CFN6|NUOI_ORITB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737406|sp|B3CUK1|NUOI_ORITI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146740602|emb|CAM81256.1| NADH dehydrogenase I chain I [Orientia tsutsugamushi str. Boryong]
 gi|189181268|dbj|BAG41048.1| NADH dehydrogenase I chain I [Orientia tsutsugamushi str. Ikeda]
          Length = 161

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 24/112 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAKEQPNGSRRTTKYDIDMTKCIYCGLCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQKYEKYFS 105
                         N E+AT+     +  K++ L +    + V  K  K  S
Sbjct: 117 VEGP----------NLEFATETHQELLYNKEKLLRNGDMWEHVIAKNLKVDS 158


>gi|157963673|ref|YP_001503707.1| dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
 gi|157848673|gb|ABV89172.1| Dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
          Length = 205

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y  + +C  C    C   CP    ++   +  + IH D CI C  C   CP DA + D 
Sbjct: 59  AYYTSISCNHCNTPACTTACPTGAMHKRAEDGLVMIHDDICIGCSSCSQACPYDAPQLDE 118


>gi|1911244|gb|AAB50621.1| beta-subunit of nitrate reductase [Pseudomonas fluorescens]
          Length = 354

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 183 CEHCLNPTCAAACPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFNWK 236


>gi|15604627|ref|NP_221145.1| NADH dehydrogenase subunit I [Rickettsia prowazekii str. Madrid E]
 gi|6647675|sp|Q9ZCF8|NUOI_RICPR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|3861322|emb|CAA15221.1| NADH DEHYDROGENASE I CHAIN I (nuoI) [Rickettsia prowazekii]
 gi|292572444|gb|ADE30359.1| NADH dehydrogenase I chain I [Rickettsia prowazekii Rp22]
          Length = 159

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 25/110 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIESDERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV-KQKYEK 102
                         N E+A  T    I  K+  L +  K +     K  K
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKERLLNNGDKWEQALANKLHK 154


>gi|312876635|ref|ZP_07736616.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796588|gb|EFR12936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 373

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+ C        E     I  ++C+ CG C   C  +A     +    + 
Sbjct: 195 KCVGC--GMCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFEAATVKWDEAASIA 252

Query: 67  LKINSEYA 74
            +  +EYA
Sbjct: 253 SEKIAEYA 260


>gi|183985165|ref|YP_001853456.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium marinum M]
 gi|183178491|gb|ACC43601.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium marinum M]
          Length = 296

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+     
Sbjct: 115 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIERREGD 171


>gi|89896472|ref|YP_519959.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335920|dbj|BAE85515.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 217

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           Y ++ +C  C + +C  +CP   + +  + + +    +C  CG C   CP +A
Sbjct: 68  YYLSSSCNHCLNPECFRLCPNHAYRKRRDGIVVFDEGKCKGCGTCIRSCPFEA 120


>gi|121997517|ref|YP_001002304.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588922|gb|ABM61502.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 681

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C+  CPVD     +     +  DEC  C +C   CP+D I  
Sbjct: 103 AFIDESQCIGC--TRCLPACPVDAIVGAQRQVHTVLADECTGCRLCVDACPMDCITM 157


>gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 645

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           V    CI C    C + C V      +     I   +CI CG C+  CP +AI 
Sbjct: 570 VDPAKCISC--GICAKACGVGAISGEKKKPFYIDRQKCIKCGACQARCPKEAIF 621



 Score = 36.9 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CP     E  +F  + P +CI CG+C   C V AI  +
Sbjct: 555 KTCPAGVCRELTDF-VVDPAKCISCGICAKACGVGAISGE 593


>gi|312794392|ref|YP_004027315.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181532|gb|ADQ41702.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 373

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+ C        E     I  ++C+ CG C   C  +A     +    + 
Sbjct: 195 KCVGC--GMCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFEAATVKWDEAASIA 252

Query: 67  LKINSEYA 74
            +  +EYA
Sbjct: 253 SEKIAEYA 260


>gi|271963458|ref|YP_003337654.1| nitrate reductase subunit beta [Streptosporangium roseum DSM 43021]
 gi|270506633|gb|ACZ84911.1| nitrate reductase (beta subunit) [Streptosporangium roseum DSM
           43021]
          Length = 543

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCINPACVAACPSGALYKRSEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 233


>gi|256832468|ref|YP_003161195.1| nitrate reductase, beta subunit [Jonesia denitrificans DSM 20603]
 gi|256685999|gb|ACV08892.1| nitrate reductase, beta subunit [Jonesia denitrificans DSM 20603]
          Length = 507

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   + 
Sbjct: 182 CEHCLNPACVSACPSSAMYKRVEDGIVLVDQDACRGWRMCVSACPYKKVY 231


>gi|205353787|ref|YP_002227588.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273568|emb|CAR38555.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628895|gb|EGE35238.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 181

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|153002651|ref|YP_001368332.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151367269|gb|ABS10269.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 228

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  +    ++++  +C+ C  C   CP  
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVNAWKCVGCQYCIAACPYK 143


>gi|116754209|ref|YP_843327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116665660|gb|ABK14687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 152

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   CV  CP      + +  +    D C  CG C   C + AI  D+E     
Sbjct: 73  CHACEDPACVRACPTGALSRKEDGSVVFDRDLCDGCGRCVDACLIGAISLDSEGKAVK 130


>gi|89109665|ref|AP_003445.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. W3110]
 gi|90111508|ref|NP_417362.4| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157154983|ref|YP_001464223.1| 4Fe-4S binding protein [Escherichia coli E24377A]
 gi|170018868|ref|YP_001723822.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli ATCC 8739]
 gi|170680835|ref|YP_001745038.1| 4Fe-4S binding protein [Escherichia coli SMS-3-5]
 gi|193063562|ref|ZP_03044651.1| 4Fe-4S binding protein [Escherichia coli E22]
 gi|194426426|ref|ZP_03058981.1| 4Fe-4S binding protein [Escherichia coli B171]
 gi|218555434|ref|YP_002388347.1| putative oxidoreductase [Escherichia coli IAI1]
 gi|218696481|ref|YP_002404148.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli 55989]
 gi|238902011|ref|YP_002927807.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BW2952]
 gi|256024605|ref|ZP_05438470.1| putative oxidoreductase [Escherichia sp. 4_1_40B]
 gi|260845553|ref|YP_003223331.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|260857008|ref|YP_003230899.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|260869562|ref|YP_003235964.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O111:H- str. 11128]
 gi|293449208|ref|ZP_06663629.1| oxidoreductase [Escherichia coli B088]
 gi|300815664|ref|ZP_07095888.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300820688|ref|ZP_07100839.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300906566|ref|ZP_07124257.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300947605|ref|ZP_07161777.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300954276|ref|ZP_07166739.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301027818|ref|ZP_07191123.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301303042|ref|ZP_07209169.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301327285|ref|ZP_07220541.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|301643766|ref|ZP_07243804.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307139572|ref|ZP_07498928.1| putative oxidoreductase [Escherichia coli H736]
 gi|307310496|ref|ZP_07590144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|331669619|ref|ZP_08370465.1| putative electron transport protein YgfS [Escherichia coli TA271]
 gi|331684510|ref|ZP_08385102.1| putative electron transport protein YgfS [Escherichia coli H299]
 gi|6920085|sp|Q46819|YGFS_ECOLI RecName: Full=Putative electron transport protein ygfS
 gi|85675698|dbj|BAE76951.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K12 substr. W3110]
 gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157077013|gb|ABV16721.1| 4Fe-4S binding protein [Escherichia coli E24377A]
 gi|169753796|gb|ACA76495.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|170518553|gb|ACB16731.1| 4Fe-4S binding protein [Escherichia coli SMS-3-5]
 gi|192930839|gb|EDV83444.1| 4Fe-4S binding protein [Escherichia coli E22]
 gi|194415734|gb|EDX32001.1| 4Fe-4S binding protein [Escherichia coli B171]
 gi|218353213|emb|CAU99126.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli 55989]
 gi|218362202|emb|CAQ99820.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli IAI1]
 gi|238862761|gb|ACR64759.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BW2952]
 gi|257755657|dbj|BAI27159.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|257760700|dbj|BAI32197.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|257765918|dbj|BAI37413.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O111:H- str. 11128]
 gi|291322298|gb|EFE61727.1| oxidoreductase [Escherichia coli B088]
 gi|299879080|gb|EFI87291.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300318737|gb|EFJ68521.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300401605|gb|EFJ85143.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300452802|gb|EFK16422.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300526952|gb|EFK48021.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300531593|gb|EFK52655.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300841706|gb|EFK69466.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|300846148|gb|EFK73908.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|301077865|gb|EFK92671.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|306909391|gb|EFN39886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309703246|emb|CBJ02581.1| putative oxidoreductase, 4Fe-4S subunit [Escherichia coli ETEC
           H10407]
 gi|315062189|gb|ADT76516.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli W]
 gi|315256767|gb|EFU36735.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|315614960|gb|EFU95598.1| hydrogenase-4 component A [Escherichia coli 3431]
 gi|320202544|gb|EFW77114.1| putative oxidoreductase, Fe-S subunit [Escherichia coli EC4100B]
 gi|323154765|gb|EFZ40963.1| hydrogenase-4 component A [Escherichia coli EPECa14]
 gi|323162525|gb|EFZ48375.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323167911|gb|EFZ53601.1| hydrogenase-4 component A [Shigella sonnei 53G]
 gi|323173882|gb|EFZ59511.1| hydrogenase-4 component A [Escherichia coli LT-68]
 gi|323180328|gb|EFZ65880.1| hydrogenase-4 component A [Escherichia coli 1180]
 gi|323183438|gb|EFZ68835.1| hydrogenase-4 component A [Escherichia coli 1357]
 gi|323377227|gb|ADX49495.1| putative oxidoreductase, Fe-S subunit [Escherichia coli KO11]
 gi|323935883|gb|EGB32182.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941594|gb|EGB37774.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323946629|gb|EGB42652.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324119926|gb|EGC13805.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|331063287|gb|EGI35200.1| putative electron transport protein YgfS [Escherichia coli TA271]
 gi|331078125|gb|EGI49331.1| putative electron transport protein YgfS [Escherichia coli H299]
          Length = 162

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|325474291|gb|EGC77479.1| ferredoxin [Treponema denticola F0402]
          Length = 58

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++  C  C    C   CPV+   E      I  D CI CG C   CPV+AI  +
Sbjct: 3  MAYKISNECTNC--AACESECPVNAISEAGGKHVIDADTCISCGACAGVCPVEAISEE 58


>gi|300904523|ref|ZP_07122363.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300403550|gb|EFJ87088.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
          Length = 208

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|255324416|ref|ZP_05365533.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Corynebacterium
           tuberculostearicum SK141]
 gi|311740730|ref|ZP_07714557.1| 4Fe-4S ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
 gi|255298322|gb|EET77622.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Corynebacterium
           tuberculostearicum SK141]
 gi|311304250|gb|EFQ80326.1| 4Fe-4S ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 352

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 122 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDD 177


>gi|237728156|ref|ZP_04558637.1| cytochrome c-type biogenesis protein [Citrobacter sp. 30_2]
 gi|226910167|gb|EEH96085.1| cytochrome c-type biogenesis protein [Citrobacter sp. 30_2]
          Length = 223

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|209695456|ref|YP_002263385.1| cytochrome c-type biogenesis protein NrfC [Aliivibrio salmonicida
           LFI1238]
 gi|208009408|emb|CAQ79684.1| cytochrome c-type biogenesis protein NrfC [Aliivibrio salmonicida
           LFI1238]
          Length = 228

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y+ E    +     +C+ CG C   CP  
Sbjct: 98  SCQHCENAPCVMVCPTGAAYKDEATGIVDVHNEKCVGCGYCLAACPYQ 145


>gi|83309275|ref|YP_419539.1| ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1]
 gi|82944116|dbj|BAE48980.1| Ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1]
          Length = 393

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          CI C    C E CPVD          +  D+C  C  C   CP  AI  
Sbjct: 14 CIRCN--TCEEACPVDAITHDGTNYVVSYDKCTGCRTCVSPCPTGAIDN 60


>gi|74313444|ref|YP_311863.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|209920340|ref|YP_002294424.1| putative oxidoreductase [Escherichia coli SE11]
 gi|254037929|ref|ZP_04871987.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|331643574|ref|ZP_08344705.1| putative electron transport protein YgfS [Escherichia coli H736]
 gi|331678870|ref|ZP_08379544.1| putative electron transport protein YgfS [Escherichia coli H591]
 gi|887836|gb|AAA83067.1| ORF_f163 [Escherichia coli]
 gi|73856921|gb|AAZ89628.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|209913599|dbj|BAG78673.1| putative oxidoreductase [Escherichia coli SE11]
 gi|226839553|gb|EEH71574.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|331037045|gb|EGI09269.1| putative electron transport protein YgfS [Escherichia coli H736]
 gi|331073700|gb|EGI45021.1| putative electron transport protein YgfS [Escherichia coli H591]
          Length = 163

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|306835751|ref|ZP_07468755.1| 4Fe-4S ferredoxin [Corynebacterium accolens ATCC 49726]
 gi|304568382|gb|EFM43943.1| 4Fe-4S ferredoxin [Corynebacterium accolens ATCC 49726]
          Length = 352

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 122 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDD 177


>gi|303247133|ref|ZP_07333408.1| response regulator receiver protein [Desulfovibrio fructosovorans
           JJ]
 gi|302491559|gb|EFL51444.1| response regulator receiver protein [Desulfovibrio fructosovorans
           JJ]
          Length = 1162

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 20/82 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF------------------YEGENFLAIHPDECIDC 43
            +V    C+ C    C +VCPV                     +   N   +  D C  C
Sbjct: 110 PFVDATKCVGC--GACAKVCPVSVPNEFNAGLTSRGAVYLPVPHAIPNHYVVDLDACQRC 167

Query: 44  GVCEPECPVDAIKPDTEPGLEL 65
             C   CP  AI    +     
Sbjct: 168 WQCYEACPTGAIDFKLDERERH 189



 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDA 54
            C  C    C++VCP          + + +    C  CG C   CP  A
Sbjct: 1080 CTRC--GKCLDVCPYGARTLDTEHDRIVVDDILCQGCGSCASACPNSA 1125


>gi|224368549|ref|YP_002602712.1| iron-sulfur cluster-binding protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223691265|gb|ACN14548.1| iron-sulfur cluster-binding protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 422

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           C+ C+   C+  CPV    +G++ +  I+P  C  CG+C   CP  A  
Sbjct: 76  CLHCQEPLCIPACPVRAIEKGKDGIVRINPALCTGCGICALACPEAAPM 124


>gi|164686673|ref|ZP_02210701.1| hypothetical protein CLOBAR_00268 [Clostridium bartlettii DSM
           16795]
 gi|164604063|gb|EDQ97528.1| hypothetical protein CLOBAR_00268 [Clostridium bartlettii DSM
           16795]
          Length = 184

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   C + CP D      N + +   +CI C  C   CP+ AI  + 
Sbjct: 59  CRQCEDAPCAKACPQDAISRKNNAIIVDQKKCIGCKNCMLACPLGAINLND 109


>gi|160934810|ref|ZP_02082196.1| hypothetical protein CLOLEP_03685 [Clostridium leptum DSM 753]
 gi|156866263|gb|EDO59635.1| hypothetical protein CLOLEP_03685 [Clostridium leptum DSM 753]
          Length = 206

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T  C  C   DC  VCP  C         I    C+ CG C   CP  AI
Sbjct: 153 YFITTGCTGC--GDCETVCPQSCIDLISVPAVIKQAHCLHCGNCYEICPAKAI 203


>gi|119719107|ref|YP_919602.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524227|gb|ABL77599.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 180

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           V  NC  C+   C+ VCPV           I     CI C +C   CP      D E
Sbjct: 59  VPLNCRHCEEAPCMAVCPVKAIKRDAEGAVIVDSLRCIGCRLCVLACPFGIPTVDKE 115


>gi|83590717|ref|YP_430726.1| ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
 gi|83573631|gb|ABC20183.1| Ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
          Length = 460

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDT 59
          M Y+  + C  C+   C E+CP       +    I   E C++CG C   C   A     
Sbjct: 1  MIYIDRDLCTGCR--RCAEICPTGAIEGNQGEPQIINREICVNCGQCVQICSAYASPY-- 56

Query: 60 EPGLELWLKINSE 72
              E     N E
Sbjct: 57 TTSPETMAAKNRE 69


>gi|53711888|ref|YP_097880.1| ferredoxin [Bacteroides fragilis YCH46]
 gi|52214753|dbj|BAD47346.1| ferredoxin [Bacteroides fragilis YCH46]
          Length = 56

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++E+CI C    C++ CPV    EG+   +I P++C DCG C   CP +AI P
Sbjct: 1  MAYVISEDCIAC--GTCIDECPVGAISEGD-IYSIDPEQCTDCGTCADVCPSEAIHP 54


>gi|326798962|ref|YP_004316781.1| iron-sulfur binding oxidoreductase [Sphingobacterium sp. 21]
 gi|326549726|gb|ADZ78111.1| putative iron-sulfur binding oxidoreductase [Sphingobacterium sp.
           21]
          Length = 1007

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  E    +  + C     C   CP    + +         
Sbjct: 834 CQHCDHAPCETVCPVLATVHSSEGLNHMAYNRCFGTRYCANNCPYKVRRFNWFNYWNDSR 893

Query: 68  K---INSEYAT--QWPNITTK 83
               +N+E+      P++T++
Sbjct: 894 FDNYLNNEFTQLVLNPDVTSR 914


>gi|313113355|ref|ZP_07798947.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624331|gb|EFQ07694.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 256

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            + VT+ CI C    CVE+CP++               C  C  C   CP +AI+   + 
Sbjct: 182 AFRVTDACIGC--GKCVELCPLNNIRLENGKPV-WGKNCTHCMACICYCPKEAIEYGKKS 238

Query: 62  GLE---LWLKINSE 72
             +    + ++  +
Sbjct: 239 KGKPRYHFEELERK 252


>gi|224373083|ref|YP_002607455.1| iron-sulfur cluster-binding protein CooF [Nautilia profundicola
           AmH]
 gi|223589422|gb|ACM93158.1| iron-sulfur cluster-binding protein CooF [Nautilia profundicola
           AmH]
          Length = 172

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C+ C+   CV  CP+D      N++ I+ D+CI C  C   CP  AI  
Sbjct: 63  CMQCEDAPCVNACPIDIIKYENNYVKIYEDDCIGCRSCAMVCPFGAIVM 111


>gi|95931411|ref|ZP_01314119.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95132529|gb|EAT14220.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 165

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + ++ CI C    CV+VCP +   EG +   ++   CI C VC+ ECPV+AI+  TE
Sbjct: 56  IDSQMCINC--QTCVDVCPTNAIVEGNDTCVVNATLCIGCQVCDAECPVEAIEEGTE 110



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           CI C    C   CPV+   EG   +   ++ DEC+ CG C  ECP +AI
Sbjct: 90  CIGC--QVCDAECPVEAIEEGTEIIAPTVYTDECVACGACTNECPTNAI 136



 Score = 35.7 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
             V T+ C+ C    C   CP +    GE    I  + C  C  C   CP
Sbjct: 114 PTVYTDECVAC--GACTNECPTNAISVGEY-AVITINACSGCRKCVDSCP 160


>gi|18311429|ref|NP_563363.1| ferredoxin [Clostridium perfringens str. 13]
 gi|110800097|ref|YP_697135.1| putative ferredoxin [Clostridium perfringens ATCC 13124]
 gi|168206841|ref|ZP_02632846.1| putative ferredoxin [Clostridium perfringens E str. JGS1987]
 gi|168211231|ref|ZP_02636856.1| putative ferredoxin [Clostridium perfringens B str. ATCC 3626]
 gi|168214736|ref|ZP_02640361.1| putative ferredoxin [Clostridium perfringens CPE str. F4969]
 gi|168217940|ref|ZP_02643565.1| putative ferredoxin [Clostridium perfringens NCTC 8239]
 gi|169344118|ref|ZP_02865101.1| putative ferredoxin [Clostridium perfringens C str. JGS1495]
 gi|182626000|ref|ZP_02953763.1| putative ferredoxin [Clostridium perfringens D str. JGS1721]
 gi|20141076|sp|P22846|FER_CLOPE RecName: Full=Ferredoxin
 gi|18146113|dbj|BAB82153.1| ferredoxin [Clostridium perfringens str. 13]
 gi|110674744|gb|ABG83731.1| putative ferredoxin [Clostridium perfringens ATCC 13124]
 gi|169297729|gb|EDS79828.1| putative ferredoxin [Clostridium perfringens C str. JGS1495]
 gi|170661735|gb|EDT14418.1| putative ferredoxin [Clostridium perfringens E str. JGS1987]
 gi|170710749|gb|EDT22931.1| putative ferredoxin [Clostridium perfringens B str. ATCC 3626]
 gi|170713813|gb|EDT25995.1| putative ferredoxin [Clostridium perfringens CPE str. F4969]
 gi|177908707|gb|EDT71218.1| putative ferredoxin [Clostridium perfringens D str. JGS1721]
 gi|182380036|gb|EDT77515.1| putative ferredoxin [Clostridium perfringens NCTC 8239]
          Length = 56

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  MAYKILDTCVSC--GACAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGAPVQE 56


>gi|312879724|ref|ZP_07739524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310783015|gb|EFQ23413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 375

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ +  C+ C    CV  C       G +    I  + C+ CG C   C   A +   E 
Sbjct: 189 VIRDKHCVGC--GACVAHCAHGAVTLGPDRIARIDEERCVGCGQCIVSCAFGAAQVVWEH 246

Query: 62  GLELWLKINSEYA 74
                 +  +EYA
Sbjct: 247 SGAALGERIAEYA 259


>gi|302391251|ref|YP_003827071.1| dihydroorotate dehydrogenase family protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203328|gb|ADL12006.1| dihydroorotate dehydrogenase family protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 409

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+ E CI C    C+  C  D       +GE    + PD+C  CG+C   CP +A+  + 
Sbjct: 339 VIPEECIGC--GMCLNWCFYDAISLYEEDGETKAKVDPDKCDHCGLCVSLCPKEALNMEY 396

Query: 60  EPGLEL 65
           E   E 
Sbjct: 397 EDKDEK 402


>gi|265751809|ref|ZP_06087602.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|263236601|gb|EEZ22071.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
          Length = 309

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CEPECP  AI+    P  +  +
Sbjct: 223 SCIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCEPECPKGAIQAINFPPRKPKV 280

Query: 68  K 68
           +
Sbjct: 281 E 281



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCVEVC  D  +         +  ++C  CG C   CP   I
Sbjct: 145 CLGC--GDCVEVCQFDAIHMNPETGLPEVDEEKCTACGACSKACPRKII 191


>gi|224024973|ref|ZP_03643339.1| hypothetical protein BACCOPRO_01704 [Bacteroides coprophilus DSM
           18228]
 gi|224018209|gb|EEF76207.1| hypothetical protein BACCOPRO_01704 [Bacteroides coprophilus DSM
           18228]
          Length = 462

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C   CP    +  +      I  D CI CG+C   CP  AI     
Sbjct: 114 YEVSNLCRGCVARSCYMNCPKGAVHFDKKTGQAHIDHDTCISCGICHKSCPYHAIVYIPV 173

Query: 61  PGLEL 65
           P  E 
Sbjct: 174 PCEEA 178



 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 15/70 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E+ +  I+ D+CI CG C
Sbjct: 146 AHIDHDTCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHNIEHINEDKCIYCGKC 205

Query: 47  EPECPVDAIK 56
              CP  AI 
Sbjct: 206 LNACPFGAIF 215


>gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4]
 gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           3_1_33FAA]
 gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei
           5_1_36/D4]
 gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           3_1_33FAA]
          Length = 302

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    C++VCP          +     +C+ CG C  ECP  AI+         +L
Sbjct: 52  KCLGC--GTCLKVCPNGALTLTPEGIVTDKQKCVLCGRCAEECPAMAIEISGTEYTAEYL 109


>gi|170741277|ref|YP_001769932.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195551|gb|ACA17498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 198

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|47215704|emb|CAG04788.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 212

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 110 EERCIACKL--CEAICPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E++  T    +  K++ L +  + +
Sbjct: 168 VQGP----------NFEFSTETHEELLYNKEKLLNNGDQWE 198


>gi|126172436|ref|YP_001048585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|160877386|ref|YP_001556702.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|217971392|ref|YP_002356143.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|304412297|ref|ZP_07393905.1| twin-arginine translocation pathway signal [Shewanella baltica
           OS183]
 gi|307306081|ref|ZP_07585826.1| twin-arginine translocation pathway signal [Shewanella baltica
           BA175]
 gi|125995641|gb|ABN59716.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
 gi|160862908|gb|ABX51442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|217496527|gb|ACK44720.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
 gi|304349332|gb|EFM13742.1| twin-arginine translocation pathway signal [Shewanella baltica
           OS183]
 gi|306910954|gb|EFN41381.1| twin-arginine translocation pathway signal [Shewanella baltica
           BA175]
 gi|315269590|gb|ADT96443.1| twin-arginine translocation pathway signal [Shewanella baltica
           OS678]
          Length = 228

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  +    ++++  +C+ C  C   CP  
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVNAWKCVGCQYCIAACPYK 143


>gi|269215798|ref|ZP_06159652.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269130748|gb|EEZ61824.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 206

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ ++  C  C +  CV VCPV   Y  E +       + CI C +C   CP    K D 
Sbjct: 65  TFHLSMTCNNCANPACVAVCPVGAMYIDEEDGTTQHDDEMCIGCQMCINACPYGVPKFDD 124


>gi|255657273|ref|ZP_05402682.1| electron transport protein [Clostridium difficile QCD-23m63]
 gi|296451874|ref|ZP_06893592.1| electron transporter [Clostridium difficile NAP08]
 gi|296879730|ref|ZP_06903705.1| electron transporter [Clostridium difficile NAP07]
 gi|296259291|gb|EFH06168.1| electron transporter [Clostridium difficile NAP08]
 gi|296429319|gb|EFH15191.1| electron transporter [Clostridium difficile NAP07]
          Length = 183

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C+  CP     +  N ++++ ++CI C  C   CP  AI    +      ++
Sbjct: 65  CRHCEDAPCLNSCPQKAIIKENNIMSVNEEKCIGCKTCLLACPFGAIDLLPQYQDGKEVE 124


>gi|212637351|ref|YP_002313876.1| formate-dependent nitrite reductase subunit NrfC [Shewanella
           piezotolerans WP3]
 gi|212558835|gb|ACJ31289.1| Formate-dependent nitrite reductase, nrfC protein [Shewanella
           piezotolerans WP3]
          Length = 238

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 108 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIGACPYDARFINKETDVAD 167

Query: 64  ELWLKINSEYAT 75
                +N++ + 
Sbjct: 168 NCDFCLNTKLSK 179


>gi|195454170|ref|XP_002074119.1| GK14477 [Drosophila willistoni]
 gi|194170204|gb|EDW85105.1| GK14477 [Drosophila willistoni]
          Length = 217

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|91204918|ref|YP_537273.1| NADH dehydrogenase subunit I [Rickettsia bellii RML369-C]
 gi|157827755|ref|YP_001496819.1| NADH dehydrogenase subunit I [Rickettsia bellii OSU 85-389]
 gi|110287771|sp|Q1RKD0|NUOI_RICBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737412|sp|A8GY32|NUOI_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91068462|gb|ABE04184.1| NADH dehydrogenase I chain I [Rickettsia bellii RML369-C]
 gi|157803059|gb|ABV79782.1| NADH dehydrogenase subunit I [Rickettsia bellii OSU 85-389]
          Length = 159

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 25/110 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV-KQKYEK 102
                         N E+A  T    I  K++ L +  + +     K  K
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKEKLLQNGDRWEQALANKLHK 154


>gi|52549176|gb|AAU83025.1| heterodisulfide reductase catalytic chain A [uncultured archaeon
           GZfos26D6]
          Length = 287

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C+ C    C  +CP D        + ++   C  CG C   CP  AI      
Sbjct: 214 AFVNEGICVGC--GTCEAICPFDALSLEAGVMHVNEVVCKGCGSCGSACPSGAITMRHFK 271

Query: 62  GLELWLKINS 71
             +++ +I +
Sbjct: 272 DEQIFAQIEA 281


>gi|312137470|ref|YP_004004807.1| nil domain protein [Methanothermus fervidus DSM 2088]
 gi|311225189|gb|ADP78045.1| NIL domain protein [Methanothermus fervidus DSM 2088]
          Length = 134

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             E CI C    CV +CPV     + +  + I  ++C+ CG C   CP+ A+   
Sbjct: 75  DKEKCIDC--GACVSICPVGAISIKDDWTVEIDDEKCVGCGCCVITCPMKAVNYY 127


>gi|297623262|ref|YP_003704696.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Truepera
           radiovictrix DSM 17093]
 gi|297164442|gb|ADI14153.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Truepera
           radiovictrix DSM 17093]
          Length = 1010

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           C  C+   C  VCPV         L  +  + C+    C   CP  
Sbjct: 835 CQHCEKAPCEPVCPVAATVHDHEGLNVMVYNRCVGTRYCSNNCPYK 880


>gi|295107537|emb|CBL05080.1| formate dehydrogenase beta subunit [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 307

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    C  +CP      +E    + +   +CI C  C   CP D
Sbjct: 78  SCQHCTDAACATICPAGAITKHEATGLVTVDDSKCIGCQYCSTACPFD 125


>gi|239636026|ref|ZP_04677040.1| nitrate reductase, beta subunit [Staphylococcus warneri L37603]
 gi|239598297|gb|EEQ80780.1| nitrate reductase, beta subunit [Staphylococcus warneri L37603]
          Length = 517

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + I  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLIDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|283797938|ref|ZP_06347091.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|291074405|gb|EFE11769.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|295091868|emb|CBK77975.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [Clostridium cf. saccharolyticum K10]
          Length = 209

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ CI CK   C   CP  C    +  +AI  + C+ CG C   CP  A++    P
Sbjct: 153 YFVTDKCIGCKL--CYSKCPQKCIDITQKPVAIEQEHCLHCGNCFEICPAGAVERRQSP 209


>gi|220925126|ref|YP_002500428.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219949733|gb|ACL60125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 198

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|119489835|ref|ZP_01622590.1| Transcriptional Regulator, XRE family protein [Lyngbya sp. PCC
          8106]
 gi|119454263|gb|EAW35414.1| Transcriptional Regulator, XRE family protein [Lyngbya sp. PCC
          8106]
          Length = 532

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC 43
          M Y + ENC  C    C   CP     E E  L I P  C  C
Sbjct: 1  MPYSIPENCSGC--GTCKPNCPTGAIQEVEGQLWIDPALCNHC 41


>gi|310658148|ref|YP_003935869.1| periplasmic [fe] hydrogenase large subunit [Clostridium
          sticklandii DSM 519]
 gi|308824926|emb|CBH20964.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
          [Clostridium sticklandii]
          Length = 456

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          +  E C  CK   C +VCPVD           I  ++C+ CG C   C   A   D E
Sbjct: 5  IDQELCTGCKM--CSDVCPVDAISGDAGKPQSIDENKCVLCGQCVQMCSSFASVFDEE 60


>gi|311278319|ref|YP_003940550.1| electron transport protein HydN [Enterobacter cloacae SCF1]
 gi|308747514|gb|ADO47266.1| electron transport protein HydN [Enterobacter cloacae SCF1]
          Length = 175

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 57  ACRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|299135397|ref|ZP_07028587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298589805|gb|EFI50010.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 198

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  ISMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|291515570|emb|CBK64780.1| 4Fe-4S binding domain [Alistipes shahii WAL 8301]
          Length = 55

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++C+ C    C+  CPV+    G+    I  D+CIDCG C   CP +AI  +
Sbjct: 1  MAYKITDSCVAC--GSCIGECPVEAISAGD-IYVIDADKCIDCGTCAGVCPSEAIVSE 55


>gi|317152862|ref|YP_004120910.1| putative ferredoxin [Desulfovibrio aespoeensis Aspo-2]
 gi|316943113|gb|ADU62164.1| putative ferredoxin [Desulfovibrio aespoeensis Aspo-2]
          Length = 266

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+E C  C    C E CP+      ++   I  ++CI C  C   CP +A      P  +
Sbjct: 191 VSEKCAQC--GVCAETCPMGAIDLNDS-AVIDKEKCITCCACIKICPQEARSMKPGPVKD 247

Query: 65  LWLKINSEY 73
              ++N  +
Sbjct: 248 AAKRLNEFF 256


>gi|258651145|ref|YP_003200301.1| nitrate reductase subunit beta [Nakamurella multipartita DSM 44233]
 gi|258554370|gb|ACV77312.1| nitrate reductase, beta subunit [Nakamurella multipartita DSM
           44233]
          Length = 561

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDKCRGWRMCVSGCPYKKVYF 232


>gi|258406380|ref|YP_003199122.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
 gi|257798607|gb|ACV69544.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 807

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E CI C+   C  VCP       E  +   P  C  CG+C   CP  A
Sbjct: 598 ETCIQCRM--CETVCPHGAIRLTEEGMVADPAFCQACGLCAAACPTHA 643



 Score = 38.0 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 23/79 (29%), Gaps = 20/79 (25%)

Query: 4   VVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECIDCGV 45
           V    C+ C    C  VCP                   D      +   I  D C  CG 
Sbjct: 247 VDPAACVAC--GACSAVCPEFGHSGFNEGLFARKAIDKDAPRAVPDAYTILDDVCTRCGA 304

Query: 46  CEPECPVDAIKPDTEPGLE 64
           CE  CP  AI    EP   
Sbjct: 305 CEEVCPAGAIDLKAEPEER 323


>gi|206575763|ref|YP_002236942.1| electron transport protein HydN [Klebsiella pneumoniae 342]
 gi|288933898|ref|YP_003437957.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|290511021|ref|ZP_06550390.1| electron transporter HydN [Klebsiella sp. 1_1_55]
 gi|206564821|gb|ACI06597.1| electron transport protein HydN [Klebsiella pneumoniae 342]
 gi|288888627|gb|ADC56945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|289776014|gb|EFD84013.1| electron transporter HydN [Klebsiella sp. 1_1_55]
          Length = 175

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P +  
Sbjct: 57  ACRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRH 114


>gi|189464155|ref|ZP_03012940.1| hypothetical protein BACINT_00491 [Bacteroides intestinalis DSM
          17393]
 gi|189437945|gb|EDV06930.1| hypothetical protein BACINT_00491 [Bacteroides intestinalis DSM
          17393]
          Length = 56

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG+   +I P+ C DCG C   CP +AI P
Sbjct: 1  MAYVINDSCVAC--GTCIDECPVGAISEGD-IYSIDPETCTDCGTCADVCPSEAIHP 54


>gi|115455639|ref|NP_001051420.1| Os03g0774200 [Oryza sativa Japonica Group]
 gi|31745233|gb|AAP68893.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
 gi|108711316|gb|ABF99111.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549891|dbj|BAF13334.1| Os03g0774200 [Oryza sativa Japonica Group]
 gi|215686857|dbj|BAG89707.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767445|dbj|BAG99673.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 223

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 121 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 179 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 211


>gi|323700274|ref|ZP_08112186.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio sp. ND132]
 gi|323460206|gb|EGB16071.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans ND132]
          Length = 704

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            E C+      CV  CP D  + G   L  I P+ C  CG C   CP   I
Sbjct: 135 PEGCLG--LGSCVRACPFDAIHMGPEGLPVIDPNRCKACGNCVDACPRGVI 183


>gi|297538836|ref|YP_003674605.1| cytochrome c oxidase accessory protein CcoG [Methylotenera sp. 301]
 gi|297258183|gb|ADI30028.1| cytochrome c oxidase accessory protein CcoG [Methylotenera sp. 301]
          Length = 482

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCPV               ECI CG+C   C     K D   GL  +  
Sbjct: 267 CIDCSF--CVQVCPVGIDIRDGLQY-----ECISCGLCIDACDSVMDKMDYPRGLIKFST 319

Query: 69  IN 70
           +N
Sbjct: 320 LN 321


>gi|296116527|ref|ZP_06835137.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976739|gb|EFG83507.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC
           23769]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP +                    I   +CI CG+CE  CPVDAI
Sbjct: 60  EERCIACKL--CEATCPAEAITIEAEPRDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K + L +  + + V
Sbjct: 118 V--EGPNYEFATETREEL------MYNKDKLLANGDRWESV 150


>gi|260434168|ref|ZP_05788139.1| NADH-quinone oxidoreductase subunit i [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417996|gb|EEX11255.1| NADH-quinone oxidoreductase subunit i [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 164

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKQKLLENGDRWEAE 152


>gi|240169393|ref|ZP_04748052.1| nitrate reductase, beta subunit [Mycobacterium kansasii ATCC 12478]
          Length = 549

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|168235874|ref|ZP_02660932.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734890|ref|YP_002115795.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710392|gb|ACF89613.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290742|gb|EDY30096.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 181

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+     P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMDVVVRP 110


>gi|157377546|ref|YP_001476146.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319920|gb|ABV39018.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 189

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP +CFY+ E+ L   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|146303585|ref|YP_001190901.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701835|gb|ABP94977.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 489

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C+  DC + CPV       +F+        +CI  G C   CP D I  + 
Sbjct: 422 CLQCRTVDCAKACPVGLTDMRASFIKKQEFKAFKCIGAGGCIEACPHDNIFIED 475


>gi|127510999|ref|YP_001092196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636294|gb|ABO21937.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 189

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP +CFY+ E+ L   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|223985321|ref|ZP_03635396.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM
           12042]
 gi|223962708|gb|EEF67145.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM
           12042]
          Length = 202

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+NC  C    C+  C  D    G +   I   +C +CG C   CP +AI
Sbjct: 105 ITDNCRKCMAKACLASCKFDAISMGLHRAQIDYTKCKECGACARSCPYNAI 155



 Score = 38.0 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           VVTE         C + CPVD     EN +  I   +CI+CG C+  CP  AI
Sbjct: 156 VVTER-------PCSQHCPVDAIRWDENGIAQIDETKCINCGACQAACPFGAI 201


>gi|170743890|ref|YP_001772545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168198164|gb|ACA20111.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 947

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
            C+ C+H  C  VCPV    ++GE       + CI    CE  CP  
Sbjct: 768 PCMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCIGTRFCEANCPYK 814


>gi|220931054|ref|YP_002507962.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
 gi|219992364|gb|ACL68967.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
          Length = 571

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  V+T    C  C    C+  CPV      +    +  D CI CG C   CP +A K +
Sbjct: 1  MGLVITSEAKCRDCYK--CIRYCPVKAIGIKDGQAWVDEDRCILCGRCIEACPQNAKKTE 58


>gi|323183237|gb|EFZ68634.1| hydrogenase-4 component A [Escherichia coli 1357]
          Length = 153

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 36 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 82


>gi|161615745|ref|YP_001589710.1| electron transport protein HydN [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|161365109|gb|ABX68877.1| hypothetical protein SPAB_03536 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 39 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 85


>gi|78355521|ref|YP_386970.1| electron transport protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217926|gb|ABB37275.1| electron transport protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 201

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 17/47 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP       +  L +    C+ C  C   CP  A+
Sbjct: 65  CRHCEDAPCAASCPAGAIRRKDGALVVEEARCVGCKTCMLACPFGAV 111


>gi|11498235|ref|NP_069461.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649992|gb|AAB90612.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 340

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV  + CI C    C E CP +     +    +  ++C  CGVC   C  +AI
Sbjct: 277 AYVDEDMCIAC--GVCEERCPFEAITLEDV-AKVDEEKCFGCGVCVVGCEQEAI 327


>gi|88802104|ref|ZP_01117632.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Polaribacter irgensii 23-P]
 gi|88782762|gb|EAR13939.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Polaribacter irgensii 23-P]
          Length = 1019

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT---EPGLE 64
           C  C H  C  VCPV     G      +  + C+    C   CP    + +        E
Sbjct: 846 CQHCNHAPCETVCPVAATTHGRQGQNQMTYNRCVGTRYCANNCPYRVRRFNWFKYADNNE 905

Query: 65  LWLKINSEYATQWPN 79
               +N+EY     N
Sbjct: 906 FDFNMNNEYGKMVLN 920


>gi|322614338|gb|EFY11269.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621597|gb|EFY18450.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624458|gb|EFY21291.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628789|gb|EFY25572.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633484|gb|EFY30226.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635940|gb|EFY32648.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639648|gb|EFY36333.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646831|gb|EFY43334.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650599|gb|EFY47004.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654789|gb|EFY51108.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659009|gb|EFY55262.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664424|gb|EFY60618.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668327|gb|EFY64484.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673693|gb|EFY69794.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677754|gb|EFY73817.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681416|gb|EFY77448.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683818|gb|EFY79828.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193793|gb|EFZ78996.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200263|gb|EFZ85345.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203234|gb|EFZ88263.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205519|gb|EFZ90484.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212807|gb|EFZ97618.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216333|gb|EGA01060.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221081|gb|EGA05512.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226902|gb|EGA11084.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230814|gb|EGA14932.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234835|gb|EGA18921.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238874|gb|EGA22924.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241574|gb|EGA25605.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248279|gb|EGA32215.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251137|gb|EGA35010.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256020|gb|EGA39758.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263155|gb|EGA46693.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264340|gb|EGA47846.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271167|gb|EGA54595.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 181

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|307545319|ref|YP_003897798.1| electron transporter RnfB [Halomonas elongata DSM 2581]
 gi|307217343|emb|CBV42613.1| K03616 electron transport complex protein RnfB [Halomonas elongata
           DSM 2581]
          Length = 325

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I     P  +
Sbjct: 80  EDECIGC--TKCIQACPVDAILGAAKQMHTVIESECTGCELCVAPCPVDCIDLLPHPEWQ 137

Query: 65  L 65
            
Sbjct: 138 A 138


>gi|256810428|ref|YP_003127797.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens
           AG86]
 gi|256793628|gb|ACV24297.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens
           AG86]
          Length = 247

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V    C LC    C++ CP     + + F+ I   +C+ CG C+  CP +AI    E
Sbjct: 154 VDKSKCKLCLK--CIDACPNGAIIKRDGFVEISIHKCLGCGNCKKICPYNAIVEGKE 208


>gi|291287134|ref|YP_003503950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884294|gb|ADD67994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 318

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    CV  CPV    + +    +    ++CI C  C+  CP +  K         
Sbjct: 110 CMHCIKPSCVSACPVSAMEQEKERGIVFYDKNKCIGCRYCQIACPFNIPKFGWPETFPK 168


>gi|298528242|ref|ZP_07015646.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511894|gb|EFI35796.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 593

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           + E C  C    C  VCP D           I  + C+ CG C   C   AI  +
Sbjct: 541 IEETCTGC--GMCKRVCPADAIRGTRKKPHFIDQELCVKCGSCFDSCKFGAILKE 593


>gi|189425709|ref|YP_001952886.1| nitrate reductase subunit beta [Geobacter lovleyi SZ]
 gi|189421968|gb|ACD96366.1| nitrate reductase, beta subunit [Geobacter lovleyi SZ]
          Length = 483

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C   CP    Y+ GE+ +  +  + C     C   CP   +  + 
Sbjct: 180 CNHCLNPACAASCPSRAIYKRGEDGVVLVDQNICKGWRFCTSACPYKKVYYNW 232


>gi|89896304|ref|YP_519791.1| hypothetical protein DSY3558 [Desulfitobacterium hafniense Y51]
 gi|89335752|dbj|BAE85347.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 273

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  + +E CI C    CV  C        E    I   +C+ CG C   CP DA+     
Sbjct: 1  MVNIDSEKCIGC--GLCVRDCFPGKIVIVEGKAQIKNKQCMQCGHCIAICPQDAVSMIEY 58

Query: 61 PGLELWLKINSEYA 74
             E+      E++
Sbjct: 59 NMAEVKAYDRREFS 72


>gi|16761620|ref|NP_457237.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766149|ref|NP_461764.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143104|ref|NP_806446.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56414795|ref|YP_151870.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181346|ref|YP_217763.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161502111|ref|YP_001569223.1| electron transport protein HydN [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|167550318|ref|ZP_02344075.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167994146|ref|ZP_02575238.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230903|ref|ZP_02655961.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168242572|ref|ZP_02667504.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168262044|ref|ZP_02684017.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464032|ref|ZP_02697949.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168820470|ref|ZP_02832470.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443395|ref|YP_002042084.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449046|ref|YP_002046803.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472394|ref|ZP_03078378.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197250119|ref|YP_002147740.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262354|ref|ZP_03162428.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197363723|ref|YP_002143360.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200386541|ref|ZP_03213153.1| protein AegA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928162|ref|ZP_03219362.1| protein AegA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|207858107|ref|YP_002244758.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213027481|ref|ZP_03341928.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213052203|ref|ZP_03345081.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426136|ref|ZP_03358886.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213613006|ref|ZP_03370832.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648112|ref|ZP_03378165.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852356|ref|ZP_03381888.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238909610|ref|ZP_04653447.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289823882|ref|ZP_06543488.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25285319|pir||AG0845 electron transport protein hydN [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16421389|gb|AAL21723.1| electron transport protein (FeS center) from formate to hydrogen
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16503921|emb|CAD05950.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138737|gb|AAO70306.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129052|gb|AAV78558.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128979|gb|AAX66682.1| electron transport protein (FeS senter) from formate to hydrogen
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|160863458|gb|ABX20081.1| hypothetical protein SARI_00128 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|194402058|gb|ACF62280.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194407350|gb|ACF67569.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458758|gb|EDX47597.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195633632|gb|EDX52046.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197095200|emb|CAR60751.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213822|gb|ACH51219.1| protein AegA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197240609|gb|EDY23229.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199603639|gb|EDZ02184.1| protein AegA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322484|gb|EDZ07681.1| protein AegA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205324768|gb|EDZ12607.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205327919|gb|EDZ14683.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334616|gb|EDZ21380.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205338064|gb|EDZ24828.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205342881|gb|EDZ29645.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349297|gb|EDZ35928.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206709910|emb|CAR34263.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247979|emb|CBG25812.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994965|gb|ACY89850.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159403|emb|CBW18921.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913861|dbj|BAJ37835.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087246|emb|CBY97011.1| Frd operon probable iron-sulfur subunit A Flags: Fragment
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223395|gb|EFX48461.1| Electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322715829|gb|EFZ07400.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|332989715|gb|AEF08698.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 181

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|323180986|gb|EFZ66524.1| hypothetical protein ECOK1180_0282 [Escherichia coli 1180]
          Length = 184

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|283833325|ref|ZP_06353066.1| putative oxidoreductase, Fe-S subunit [Citrobacter youngae ATCC
           29220]
 gi|291070963|gb|EFE09072.1| putative oxidoreductase, Fe-S subunit [Citrobacter youngae ATCC
           29220]
          Length = 208

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C++VCP+    + + +  +A+    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKDPQCMKVCPIGAITWKQEDGCIAVDHKRCIGCSACTTACPWIMATVNTE 176


>gi|283786740|ref|YP_003366605.1| electron transport protein [Citrobacter rodentium ICC168]
 gi|282950194|emb|CBG89830.1| electron transport protein [Citrobacter rodentium ICC168]
          Length = 181

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|195395498|ref|XP_002056373.1| GJ10912 [Drosophila virilis]
 gi|194143082|gb|EDW59485.1| GJ10912 [Drosophila virilis]
          Length = 217

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|171060331|ref|YP_001792680.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Leptothrix cholodnii
           SP-6]
 gi|170777776|gb|ACB35915.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Leptothrix cholodnii
           SP-6]
          Length = 431

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 22/108 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP------ 57
           +  E CI C    C  +CPV           +   +C  C  C   CP  +I        
Sbjct: 15  IDPEICIRCN--TCEAICPVQAITHDSRNYVVDAVKCNLCMACISPCPTGSIDNWRTMPR 72

Query: 58  ---DTEPGLELWLKINSEY-----------ATQWPNITTKKESLPSAA 91
               +      W ++ +E            A   P +     SLP+AA
Sbjct: 73  VVAYSIEDQFGWDELPAELTADQLAEAGVSADAAPALEPVTPSLPAAA 120



 Score = 33.8 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 22 PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNIT 81
          P D          I P+ CI C  CE  CPV AI  D+   +   +K N   A   P  T
Sbjct: 4  PTDAAVI--KQHLIDPEICIRCNTCEAICPVQAITHDSRNYVVDAVKCNLCMACISPCPT 61

Query: 82 TKKE 85
             +
Sbjct: 62 GSID 65


>gi|170749608|ref|YP_001755868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656130|gb|ACB25185.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 198

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGCGYCFYACPFGAPQY 104


>gi|167758024|ref|ZP_02430151.1| hypothetical protein CLOSCI_00361 [Clostridium scindens ATCC
          35704]
 gi|167664456|gb|EDS08586.1| hypothetical protein CLOSCI_00361 [Clostridium scindens ATCC
          35704]
          Length = 141

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
          M+Y +TE CI C  T C ++CPV       +    I+   C++CGVC   C   AI
Sbjct: 1  MSYFITEKCIGC--TLCKKLCPVGAVEGTLKERHRINEKRCVECGVCGRACGQGAI 54


>gi|110679688|ref|YP_682695.1| nitrate reductase, beta subunit [Roseobacter denitrificans OCh 114]
 gi|109455804|gb|ABG32009.1| nitrate reductase, beta subunit [Roseobacter denitrificans OCh 114]
          Length = 506

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  C   CP    Y+ E    + I  ++C    +C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCVSGCPYKKVYYN 234

Query: 59  TE 60
            E
Sbjct: 235 WE 236


>gi|89893987|ref|YP_517474.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89333435|dbj|BAE83030.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 192

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    CV+ CP    +  E+       ++CI C  C   CP  A +   E
Sbjct: 57  ACNHCAEAKCVKGCPTGAMHYAEDGTVQHDKNKCIGCKYCIWNCPYGAPQFLEE 110


>gi|14520613|ref|NP_126088.1| electron transport protein [Pyrococcus abyssi GE5]
 gi|5457829|emb|CAB49319.1| Electron transport protein, containing 4Fe-4S binding domain
          [Pyrococcus abyssi GE5]
          Length = 166

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C    C+E CP          L +  +EC  CG C   CP  A+
Sbjct: 53 CRQCDPAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAV 99


>gi|297526580|ref|YP_003668604.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           hellenicus DSM 12710]
 gi|297255496|gb|ADI31705.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           hellenicus DSM 12710]
          Length = 406

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
             V    CI C    C +VC  +        EG+    ++ D C  CG+C   CP  AI 
Sbjct: 343 PVVDPRKCIGC--GFCEQVCDYNAVKVLPSEEGKRIAQVNHDLCYGCGLCTSVCPTRAIH 400

Query: 57  PDTE 60
            + E
Sbjct: 401 FEEE 404



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNIT 81
             + P +CI CG CE  C  +A+K       +   ++N +        T
Sbjct: 343 PVVDPRKCIGCGFCEQVCDYNAVKVLPSEEGKRIAQVNHDLCYGCGLCT 391


>gi|281358583|ref|ZP_06245062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
 gi|281314931|gb|EFA98965.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
          Length = 369

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V    CI      C  +C        E    I   +C+ CG C   CP DAI+P    
Sbjct: 191 PTVDRTLCIG--SRACARICAHGAPTFSEGKAEIDHAKCVGCGRCIGVCPKDAIQPSWGQ 248

Query: 62  GLELWLKINSEYA 74
              L  +  +EYA
Sbjct: 249 QEGLLDRKMAEYA 261


>gi|260772822|ref|ZP_05881738.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP
           69.14]
 gi|260611961|gb|EEX37164.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP
           69.14]
          Length = 553

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 6   TENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVD 53
           T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP +
Sbjct: 173 TDLCAHSSRGVKGCE--RCVDACPAGALSSEGSAQTGHRIEINPYLCQGIGTCATACPTE 230

Query: 54  AIKPD--TEPGLELWLK--INSEY 73
           AI          + +++  +N  +
Sbjct: 231 AIHYALPNPTDTQKFVERLLNHYF 254



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDA------IKP 57
           +++C LC    CV VCP    +   +  A+H  E  C+ CG+C   CP         I  
Sbjct: 417 SQDCTLC--MSCVAVCPTRALHHSGDIPALHFTEQDCVQCGLCVTACPEKVLTAVPRINW 474

Query: 58  DTEPGL 63
           D +   
Sbjct: 475 DHDERQ 480


>gi|255526305|ref|ZP_05393221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296185227|ref|ZP_06853637.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510018|gb|EET86342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296050061|gb|EFG89485.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 417

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
            + E+CI C    C + CP+D               + C+ CG+C   CP  +I 
Sbjct: 287 FIEESCIGC--GKCAKACPIDAIKIDPVTKKARTDENICLGCGICVRNCPKKSIY 339


>gi|258655376|ref|YP_003204532.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258558601|gb|ACV81543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 332

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + I  D C  CG C   CP   ++   +
Sbjct: 126 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVIQADVCNGCGTCVAGCPFGVVERRDD 181


>gi|222832215|gb|EEE70692.1| predicted protein [Populus trichocarpa]
          Length = 320

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+    C  C +  CV  CP    Y+ E    + +  D+C    +C   CP   I  +
Sbjct: 20 MMYL-PRLCEHCLNPTCVASCPSGSVYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFN 78

Query: 59 T 59
           
Sbjct: 79 W 79


>gi|161505794|ref|YP_001572906.1| hypothetical protein SARI_03970 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867141|gb|ABX23764.1| hypothetical protein SARI_03970 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 157

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV   +     + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIHRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|150400325|ref|YP_001324092.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150013028|gb|ABR55480.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Methanococcus vannielii SB]
          Length = 579

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 2   TYVVTEN-CILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           TYV+ EN C  CK   C+++ CP   F        I+   C+ CG+C+  C   AI  +
Sbjct: 522 TYVIDENNCNGCKL--CLKIGCPAISF--DGKIARINTALCVGCGLCKDVCKFSAIDIE 576


>gi|118467237|ref|YP_884190.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104]
 gi|118168524|gb|ABK69421.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104]
          Length = 511

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEYATQWPNITTKKES 86
            L I P  C+DCG C   CPVDAI+ + E   E   +  IN+ Y    P        
Sbjct: 10 PMLYIDPQACVDCGACVEVCPVDAIRHEDELTDEQARFKDINAAYFAAQPLTVRPMSP 67


>gi|170728793|ref|YP_001762819.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814140|gb|ACA88724.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 236

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 106 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETDVAD 165

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 166 NCDFCLNSKLA 176


>gi|9651774|gb|AAF91266.1|AF230199_8 pyruvate oxidoreductase cysteine-rich subunit 1 [Methanococcus
          maripaludis]
          Length = 167

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C++VCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMDVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91



 Score = 33.8 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+  E+CI C    C   CP    Y  G+           D   C   C    ++     
Sbjct: 69  YLDKESCIGC--GLCAMACPFGAIYISGKTAHKCDLCFGRDEQACVKACSKRCLEVVNVD 126

Query: 62  GLELWLKIN 70
            L +  K+N
Sbjct: 127 ELVMDKKLN 135


>gi|326383207|ref|ZP_08204895.1| nitrate reductase subunit beta [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197957|gb|EGD55143.1| nitrate reductase subunit beta [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 554

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+ E    + +  D C     C   CP   I  
Sbjct: 186 CEHCLNPSCMASCPSGAIYKREEDGIVLVDQDRCRGWRQCITGCPYKKIYF 236


>gi|303326491|ref|ZP_07356934.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864407|gb|EFL87338.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 329

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C +  C  +C      +  +    I    C+  G C+  CP  
Sbjct: 128 RCMHCTNPPCANLCSTGAARQRASGAVYIDHGSCMGDGQCDRACPWM 174


>gi|294011317|ref|YP_003544777.1| NADH dehydrogenase I chain I [Sphingobium japonicum UT26S]
 gi|292674647|dbj|BAI96165.1| NADH dehydrogenase I chain I [Sphingobium japonicum UT26S]
          Length = 161

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAQPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       I  K + L +  K +
Sbjct: 117 V--EGPNFEFSTETREEL------IYDKAKLLENGDKWE 147


>gi|291280064|ref|YP_003496899.1| iron-sulfur cluster-binding protein [Deferribacter desulfuricans
           SSM1]
 gi|290754766|dbj|BAI81143.1| iron-sulfur cluster-binding protein [Deferribacter desulfuricans
           SSM1]
          Length = 288

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C+ C    C EVC  D      +   I    C  CG C  EC  +AI    +   E +
Sbjct: 67  ERCVKCN--RCYEVCEFDAVNFDGDTYLIDKLSCEGCGFCSYECKAEAINSYEKLTGEKY 124

Query: 67  LKI 69
           + I
Sbjct: 125 ISI 127


>gi|253582041|ref|ZP_04859265.1| dihydroorotate dehydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836390|gb|EES64927.1| dihydroorotate dehydrogenase [Fusobacterium varium ATCC 27725]
          Length = 365

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V TE CI C+   C  VC        E    I+ ++C  CGVC  +CP  A+
Sbjct: 310 PVVTTEKCIGCR--VCKTVCGYKAIEIIEKKAVINKEKCFGCGVCVSKCPTKAM 361


>gi|238921129|ref|YP_002934644.1| 4Fe-4S binding domain protein [Edwardsiella ictaluri 93-146]
 gi|238870698|gb|ACR70409.1| 4Fe-4S binding domain protein [Edwardsiella ictaluri 93-146]
          Length = 204

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI
Sbjct: 51 CHHCEDAPCALVCPVNAITRQDGAIQLNESLCVGCKLCGIACPFGAI 97


>gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           9_1_42FAA]
 gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           9_1_42FAA]
          Length = 300

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    C++VCP          +     +C+ CG C  ECP  AI+         +L
Sbjct: 50  KCLGC--GTCLKVCPNGALTLTPEGIVTDKQKCVLCGRCAEECPAMAIEISGTEYTAEYL 107


>gi|164687084|ref|ZP_02211112.1| hypothetical protein CLOBAR_00710 [Clostridium bartlettii DSM
          16795]
 gi|164603969|gb|EDQ97434.1| hypothetical protein CLOBAR_00710 [Clostridium bartlettii DSM
          16795]
          Length = 56

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y++ + CI C    C   CPV+C   G++   I  D CI+CG C   CPV+A   +
Sbjct: 1  MAYIIGDACISC--GACESECPVECISAGDDKYVIDADSCIECGSCADVCPVEAPCAE 56


>gi|159901983|gb|ABX10713.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [uncultured planctomycete 13FN]
          Length = 1064

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C  C++  C +VCPV    +  E    +  + C+    C   CP    + +       +
Sbjct: 874 ACHHCENAPCEQVCPVAATVHSDEGLNDMVYNRCVGTRYCANNCPYKVRRFN-------F 926

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              N+  A     +     +     +  GV +K
Sbjct: 927 FDYNAPLAEPENVLQKMILNPEVTVRSRGVMEK 959


>gi|118468429|ref|YP_889385.1| nitrate reductase subunit beta [Mycobacterium smegmatis str. MC2
           155]
 gi|118169716|gb|ABK70612.1| nitrate reductase, beta subunit [Mycobacterium smegmatis str. MC2
           155]
          Length = 548

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|118090950|ref|XP_001232780.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) [Gallus
           gallus]
          Length = 209

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 107 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 164

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 165 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 197


>gi|325964852|ref|YP_004242758.1| respiratory nitrate reductase subunit beta [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470939|gb|ADX74624.1| respiratory nitrate reductase beta subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 564

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D+C     C   CP   I  
Sbjct: 186 CEHCLNPSCMASCPSGAIYKRVEDGIVLVDQDKCRGWRQCVTGCPYKKIYF 236


>gi|310823998|ref|YP_003956356.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397070|gb|ADO74529.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Stigmatella aurantiaca DW4/3-1]
          Length = 1088

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C+   C  VCPV+   +  E    +  + CI    C   CP  
Sbjct: 910 CVHCEKAPCEYVCPVNATVHSDEGLNDMVYNRCIGTRYCANNCPYK 955


>gi|255525440|ref|ZP_05392378.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296187867|ref|ZP_06856261.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510907|gb|EET87209.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296047824|gb|EFG87264.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 268

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP--- 61
           E CI C    CV  CP+     GEN    I+ D C+ CG C   CP +AI     P   
Sbjct: 8  KEKCIKC--GACVMECPISILRMGENGPEEIYEDRCMSCGHCVAVCPKEAIDNKKSPLSM 65

Query: 62 --GLELWLKINSEYATQW 77
              +   ++N+E A  +
Sbjct: 66 QVNAKNLTRLNAEEAENF 83


>gi|251790305|ref|YP_003005026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Dickeya zeae Ech1591]
 gi|247538926|gb|ACT07547.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae
           Ech1591]
          Length = 180

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        + + +  ++CI C  C   CP  A+   ++P
Sbjct: 57  CRHCEDAPCANVCPNGAIVHAGDHIRVQQEKCIGCKTCVVACPYGAMTVISKP 109


>gi|213420829|ref|ZP_03353895.1| electron transport protein HydN [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 132

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 9  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 55


>gi|157377550|ref|YP_001476150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319924|gb|ABV39022.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 196

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C  VCP +CFY+ E+ L   + D CI CG C   CP  A
Sbjct: 56  ACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|225181056|ref|ZP_03734503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168253|gb|EEG77057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 416

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V E C  C    CV+ CPVD      + E    I  + C+ CGVC  +CP  A+
Sbjct: 286 VLEGCTGC--GKCVQACPVDAIGVTDKEEKKAQIDTEYCLGCGVCTVQCPTKAL 337


>gi|154494844|ref|ZP_02033849.1| hypothetical protein PARMER_03888 [Parabacteroides merdae ATCC
          43184]
 gi|218262678|ref|ZP_03477036.1| hypothetical protein PRABACTJOHN_02715 [Parabacteroides johnsonii
          DSM 18315]
 gi|154085394|gb|EDN84439.1| hypothetical protein PARMER_03888 [Parabacteroides merdae ATCC
          43184]
 gi|218223229|gb|EEC95879.1| hypothetical protein PRABACTJOHN_02715 [Parabacteroides johnsonii
          DSM 18315]
          Length = 56

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+   +I P+ C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVGAISEGD-KYSIDPEMCTDCGTCADACPTEAIHP 54


>gi|114771827|ref|ZP_01449220.1| NADH dehydrogenase subunit I [alpha proteobacterium HTCC2255]
 gi|114547643|gb|EAU50534.1| NADH dehydrogenase subunit I [alpha proteobacterium HTCC2255]
          Length = 163

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 119 V--EGPNFEFATETREELF------YNKNKLLSNGDRWEAE 151


>gi|222055601|ref|YP_002537963.1| nitroreductase [Geobacter sp. FRC-32]
 gi|221564890|gb|ACM20862.1| nitroreductase [Geobacter sp. FRC-32]
          Length = 303

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAI 55
            V TE C+ C    C  +CPV      +  + I  +    CI CG C   CP  +I
Sbjct: 14 PVVETERCLHC--GKCAAICPVGVLQLKDENIKIDNNIHFGCIACGQCMMVCPNGSI 68


>gi|163849840|ref|YP_001637883.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|188579726|ref|YP_001923171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|218528470|ref|YP_002419286.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240137064|ref|YP_002961533.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens AM1]
 gi|254559072|ref|YP_003066167.1| formate dehydrogenase iron-sulfur subunit beta [Methylobacterium
           extorquens DM4]
 gi|27902653|gb|AAO24617.1| formate dehydrogenase beta subunit [Methylobacterium extorquens]
 gi|163661445|gb|ABY28812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
 gi|179343224|gb|ACB78636.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|218520773|gb|ACK81358.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240007030|gb|ACS38256.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens AM1]
 gi|254266350|emb|CAX22114.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens DM4]
          Length = 198

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGCGYCFYACPFGAPQY 104


>gi|302348411|ref|YP_003816049.1| Indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Acidilobus saccharovorans 345-15]
 gi|302328823|gb|ADL19018.1| Indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Acidilobus saccharovorans 345-15]
          Length = 633

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 3   YVVTE-NCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V +  C  C    C     CP     + +    I P  C  CGVC   CP  AI
Sbjct: 566 YQVEDDKCTAC--GICYNAFSCPAIFV-KDDRKAWIDPSLCTGCGVCAEICPYKAI 618


>gi|296132284|ref|YP_003639531.1| sigma54 specific transcriptional regulator, Fis family
          [Thermincola sp. JR]
 gi|296030862|gb|ADG81630.1| sigma54 specific transcriptional regulator, Fis family
          [Thermincola potens JR]
          Length = 734

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 1  MTYV--VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  V  + E C  C    C+  CP       E    +  + C+ CG C   C   A   D
Sbjct: 1  MAVVQTIKERCQTCY--SCIRNCPAKAIKVVEGQATVVEERCVSCGNCVRVCAQKAKVVD 58

Query: 59 TEPGL 63
          +    
Sbjct: 59 SRDMD 63


>gi|169335113|ref|ZP_02862306.1| hypothetical protein ANASTE_01520 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257851|gb|EDS71817.1| hypothetical protein ANASTE_01520 [Anaerofustis stercorihominis DSM
           17244]
          Length = 273

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V   C  CK   C EVCP+    + +         CI CG C  +CP++A   D E  L 
Sbjct: 200 VNHRCNDCKL--CAEVCPMGSIDKDDIRKY--NGICIKCGACIKKCPMNARYYDDEGYLY 255

Query: 65  LWLKINSEYATQWPN 79
              ++   YA +  +
Sbjct: 256 HKKELEEMYARRAED 270


>gi|157373490|ref|YP_001472090.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157315864|gb|ABV34962.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 211

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D 
Sbjct: 63  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAADLCIGCESCARACPYDAPQIDK 122

Query: 60  E 60
           +
Sbjct: 123 D 123


>gi|92117735|ref|YP_577464.1| NADH dehydrogenase subunit I [Nitrobacter hamburgensis X14]
 gi|123265191|sp|Q1QL93|NUOI_NITHX RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91800629|gb|ABE63004.1| NADH dehydrogenase subunit I [Nitrobacter hamburgensis X14]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K + L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKAKLLANGDRWEREIAK 153


>gi|39995452|ref|NP_951403.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA]
 gi|39982215|gb|AAR33676.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA]
 gi|298504451|gb|ADI83174.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400]
          Length = 591

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           VV E C+ C    C + CPVD     +  +AI   ++C  C  C   C   AI
Sbjct: 540 VVEEKCVKC--GACFKACPVDAIIWEKGQIAILDKEKCTKCKSCYDACRFMAI 590


>gi|78355704|ref|YP_387153.1| Iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218109|gb|ABB37458.1| Iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 356

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C +  C  +CP    Y+  +    I  D C+    C   CP D
Sbjct: 141 IPRRCMHCDNPLCANLCPWGAAYKENSGTVRIDDDICLGGAKCRQVCPWD 190


>gi|327401443|ref|YP_004342282.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316951|gb|AEA47567.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 659

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++  E C  C+   C+ +CP       E      ++P  C  CG C   CP  A +   
Sbjct: 587 AFIREERCSGCR--ICIGMCPYGAISFDEEKGVAVVNPAMCRGCGTCVAACPSKAAQQYL 644

Query: 60  EPGLELWLKI 69
               +++ +I
Sbjct: 645 FRDEQIYAEI 654


>gi|313896777|ref|ZP_07830325.1| putative formate dehydrogenase, beta subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974694|gb|EFR40161.1| putative formate dehydrogenase, beta subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 274

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC  C +  C   CP +      N  + I+ D+CI C  CE  CP    K D 
Sbjct: 76  NCFHCGNPACAAGCPANAIDRNPNGTVVINEDKCIGCHYCEHNCPWHIPKIDE 128


>gi|303258432|ref|ZP_07344435.1| nitrate reductase, beta subunit [Burkholderiales bacterium 1_1_47]
 gi|330999767|ref|ZP_08323475.1| nitrate reductase, beta subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|302858878|gb|EFL81966.1| nitrate reductase, beta subunit [Burkholderiales bacterium 1_1_47]
 gi|329573929|gb|EGG55509.1| nitrate reductase, beta subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 534

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ E    + +  ++C    +C   CP   +  + 
Sbjct: 182 CEHCLNPACVASCPSGSIYKREEDGIVLVDQNKCKGWRMCMSGCPYKKVYYNW 234


>gi|303247436|ref|ZP_07333708.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302491132|gb|EFL51024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 266

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V + C  C    CV  CPV C +  ++ +      CI C  C   CP  A
Sbjct: 190 VADECERC--GQCVTACPVGCVHLEDSGVVTDKAACIRCCACVKGCPTGA 237



 Score = 33.8 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGE 30
           VVT+   CI C    CV+ CP       +
Sbjct: 216 VVTDKAACIRC--CACVKGCPTGARVMTD 242


>gi|291521594|emb|CBK79887.1| Iron only hydrogenase large subunit, C-terminal domain
          [Coprococcus catus GD/7]
          Length = 477

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
          Y+    C  C +  C++ CP            I    CIDCG C   C   A  I  D+ 
Sbjct: 10 YLDESLCKGCIN--CIKRCPTQAIRVRNGKARITSQFCIDCGECVRTCSHHAKKIHIDSL 67

Query: 61 PGLELW 66
            L  +
Sbjct: 68 DILNNY 73


>gi|268324259|emb|CBH37847.1| conserved hypothetical protein, 4Fe-4S binding domain family
           [uncultured archaeon]
          Length = 154

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C   DCV +CPV    + E+ + +    +CI C +C   CP  A+    +      
Sbjct: 54  SCMHCSEPDCVAICPVTAITQREDGIVLGDKTKCIGCRLCVTACPF-AVPQYPQDLQGDL 112

Query: 67  LKINSEYAT 75
            + N +   
Sbjct: 113 AEWNGKLDK 121


>gi|218262823|ref|ZP_03477181.1| hypothetical protein PRABACTJOHN_02861 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223118|gb|EEC95768.1| hypothetical protein PRABACTJOHN_02861 [Parabacteroides johnsonii
           DSM 18315]
          Length = 262

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ VT+ CI C    C  +CP               + C+ C  C   CPV AI+ 
Sbjct: 189 SFRVTDACISC--GLCERICPTGTISLQGGKPV-WANTCVQCVACIHRCPVRAIEY 241


>gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
 gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
          Length = 597

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 2   TYVVTE-NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           TY + +  C  C  T C   CPV       +   +I   +CI CG C  +C   AI  +
Sbjct: 541 TYKIIDLKCKGC--TACARGCPVGAISGTVKQPHSIDTAKCIKCGACMAKCKFGAIIKE 597


>gi|326402523|ref|YP_004282604.1| polysulfide reductase chain B [Acidiphilium multivorum AIU301]
 gi|325049384|dbj|BAJ79722.1| polysulfide reductase chain B [Acidiphilium multivorum AIU301]
          Length = 180

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +E C  C H  CV+ CP     ++ G N + +    C  C  C   CP D+      
Sbjct: 55  SERCNHCSHATCVDACPTGASQYWNGSNIVVVDATRCTGCKACIAACPYDSRLIMEP 111


>gi|310658331|ref|YP_003936052.1| iron-sulfur-binding protein [Clostridium sticklandii DSM 519]
 gi|308825109|emb|CBH21147.1| putative iron-sulfur-binding protein [Clostridium sticklandii]
          Length = 340

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + CI C    CV+ C V+   E +    IH ++C+ C  C   CPV AI  D     
Sbjct: 185 VIEKKCISC--GLCVKKCDVEAI-EMKEKAFIHSEKCVGCAGCIAVCPVGAIVNDWSEVN 241

Query: 64  ELWLKINSEYA 74
             + +  +EYA
Sbjct: 242 --FKEKLAEYA 250


>gi|297493958|gb|ADI40701.1| NADH dehydrogenase Fe-S protein 8 [Miniopterus schreibersii]
          Length = 166

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 77  EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 134

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E++  T    +  K++ L +  K +
Sbjct: 135 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWE 165


>gi|295115164|emb|CBL36011.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [butyrate-producing bacterium SM4/1]
          Length = 209

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ CI CK   C   CP  C    +  +AI  + C+ CG C   CP  A++    P
Sbjct: 153 YFVTDKCIGCKL--CYSKCPQKCIDITQKPVAIEQEHCLHCGNCFEICPAGAVERRQSP 209


>gi|282857149|ref|ZP_06266393.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Pyramidobacter piscolens W5455]
 gi|282584935|gb|EFB90259.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Pyramidobacter piscolens W5455]
          Length = 390

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E CI C    C   CP           G+    IH + C+ C  C   CP  A+   
Sbjct: 200 VDEEKCIGC--GRCFRNCPGHAITMEKDAAGKTTSHIHAEPCLGCCECMTVCPTQAVGMI 257

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESL 87
                +     N   A   W  I  K   L
Sbjct: 258 WTADEDK-SSFNCRMAEYAWGAIKDKTRPL 286


>gi|227501590|ref|ZP_03931639.1| possible formate dehydrogenase beta subunit [Corynebacterium
           accolens ATCC 49725]
 gi|227077615|gb|EEI15578.1| possible formate dehydrogenase beta subunit [Corynebacterium
           accolens ATCC 49725]
          Length = 352

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 122 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDD 177


>gi|194745003|ref|XP_001954982.1| GF16476 [Drosophila ananassae]
 gi|190628019|gb|EDV43543.1| GF16476 [Drosophila ananassae]
          Length = 217

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|37679436|ref|NP_934045.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           vulnificus YJ016]
 gi|37198180|dbj|BAC94016.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           vulnificus YJ016]
          Length = 265

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 135 SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 191


>gi|323966686|gb|EGB62118.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327251647|gb|EGE63333.1| hydrogenase-4 component A [Escherichia coli STEC_7v]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|291280457|ref|YP_003497292.1| nitrate reductase subunit beta [Deferribacter desulfuricans SSM1]
 gi|290755159|dbj|BAI81536.1| nitrate reductase, beta subunit [Deferribacter desulfuricans SSM1]
          Length = 480

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + ++ ++C     C   CP   +  + 
Sbjct: 181 CNHCLNPACVASCPSGAIYKRGEDGIVLVNQEKCKSWRYCISACPYKKVYFNW 233


>gi|289549969|ref|YP_003470873.1| Respiratory nitrate reductase beta chain [Staphylococcus
           lugdunensis HKU09-01]
 gi|289179501|gb|ADC86746.1| Respiratory nitrate reductase beta chain [Staphylococcus
           lugdunensis HKU09-01]
          Length = 479

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 139 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 197

Query: 59  TEPGLEL 65
            +     
Sbjct: 198 WKTNKAE 204


>gi|257790213|ref|YP_003180819.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474110|gb|ACV54430.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 178

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           V   C+ C++  C +VCP    Y  ++ +  +  ++CI C  C   CP 
Sbjct: 54  VPVQCMHCENAPCQQVCPTHATYTTDSGVVLVDEEKCIGCKYCMAACPY 102


>gi|325300099|ref|YP_004260016.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides salanitronis DSM 18170]
 gi|324319652|gb|ADY37543.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides salanitronis DSM 18170]
          Length = 55

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+   +I+PD C +CG C   CP +AI  
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVGAISEGD-KYSINPDMCTECGTCADVCPSEAIHQ 54


>gi|156379274|ref|XP_001631383.1| predicted protein [Nematostella vectensis]
 gi|156218422|gb|EDO39320.1| predicted protein [Nematostella vectensis]
          Length = 182

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 80  EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 137

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 138 VEGP----------NFEFATETHEELLYNKEKLLNNGDRWEAE 170


>gi|121534272|ref|ZP_01666096.1| electron transfer flavoprotein, alpha subunit [Thermosinus
          carboxydivorans Nor1]
 gi|121307042|gb|EAX47960.1| electron transfer flavoprotein, alpha subunit [Thermosinus
          carboxydivorans Nor1]
          Length = 399

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V+ + C+ C    CV  CP        +  A   + C  CG C   CPV AI  + E  
Sbjct: 5  VIKDQCVSC--GACVSTCPFGAIIMESDNKAFITEACTACGACIDACPVGAIIREEEEK 61


>gi|114798298|ref|YP_760457.1| NADH dehydrogenase subunit I [Hyphomonas neptunium ATCC 15444]
 gi|123128794|sp|Q0C1D6|NUOI_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114738472|gb|ABI76597.1| NADH-quinone oxidoreductase, I subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 161

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAEPREDGARRTTRYDIDMVKCIYCGFCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P  E   +   E          K+  L +  + + +  K
Sbjct: 117 V--EGPNFEFATETREELF------YDKERLLANGDRWERLIAK 152


>gi|83942660|ref|ZP_00955121.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36]
 gi|83846753|gb|EAP84629.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36]
          Length = 164

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFSTETREELF------YDKAKLLDNGERWEAE 152


>gi|191166000|ref|ZP_03027836.1| 4Fe-4S binding protein [Escherichia coli B7A]
 gi|256019317|ref|ZP_05433182.1| putative oxidoreductase [Shigella sp. D9]
 gi|309793956|ref|ZP_07688381.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|190903948|gb|EDV63661.1| 4Fe-4S binding protein [Escherichia coli B7A]
 gi|308122363|gb|EFO59625.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMISIQSLPGD 109


>gi|116668883|ref|YP_829816.1| respiratory nitrate reductase subunit beta [Arthrobacter sp. FB24]
 gi|116608992|gb|ABK01716.1| respiratory nitrate reductase beta subunit [Arthrobacter sp. FB24]
          Length = 557

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D+C     C   CP   I  
Sbjct: 186 CEHCLNPSCMASCPSGAIYKRVEDGIVLVDQDKCRGWRQCVTGCPYKKIYF 236


>gi|332280430|ref|ZP_08392843.1| 4Fe-4S binding protein [Shigella sp. D9]
 gi|332102782|gb|EGJ06128.1| 4Fe-4S binding protein [Shigella sp. D9]
          Length = 163

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMISIQSLPGD 110


>gi|312830742|emb|CBX35584.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 481

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 139 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 197

Query: 59  TEPGLEL 65
            +     
Sbjct: 198 WKTNKAE 204


>gi|294101675|ref|YP_003553533.1| Fe-S cluster domain protein [Aminobacterium colombiense DSM
          12261]
 gi|293616655|gb|ADE56809.1| Fe-S cluster domain protein [Aminobacterium colombiense DSM
          12261]
          Length = 432

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C   +C++ CP +        + I  D CIDCG C  +C   AI  + + 
Sbjct: 11 RCRGC--ANCIKTCPTEAMRVLTGCVHIISDLCIDCGECIRKCKEKAIILNEDE 62


>gi|187251887|ref|YP_001876369.1| electron transfer flavoprotein subunit alpha [Elusimicrobium
          minutum Pei191]
 gi|186972047|gb|ACC99032.1| Electron transfer flavoprotein alpha subunit [Elusimicrobium
          minutum Pei191]
          Length = 397

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  NCI C  T CV +CP            ++   C  CG C PECPV  I  
Sbjct: 4  IGSNCIGC--TKCVRICPFGALSMDGKKAVVNSA-CTLCGACIPECPVKCISM 53


>gi|320156811|ref|YP_004189190.1| NrfC protein [Vibrio vulnificus MO6-24/O]
 gi|319932123|gb|ADV86987.1| NrfC protein [Vibrio vulnificus MO6-24/O]
          Length = 228

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 154


>gi|56479031|ref|YP_160620.1| nitrate reductase, beta subunit [Aromatoleum aromaticum EbN1]
 gi|56315074|emb|CAI09719.1| Nitrate reductase, beta subunit [Aromatoleum aromaticum EbN1]
          Length = 516

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    +    D C    +C   CP   +  + E
Sbjct: 182 CNHCINPACVASCPSGALYKREEDGIVLADQDRCRGWRMCISGCPYKKVFFNWE 235


>gi|327400962|ref|YP_004341801.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316470|gb|AEA47086.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 753

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           VTENCI C+   C EVC  +     E      I  + C  CG C   CPVDAI  
Sbjct: 554 VTENCIGCRL--CAEVCRFNAVVIDERSGKAKIDANACAMCGACVAACPVDAIDM 606



 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 18/80 (22%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--------------GENFLAIHPDECIDCGVCEPEC 50
           V ENC  C   DC  VCPVD F                   + AI  + CI C +C   C
Sbjct: 235 VNENCKGCIE-DCSSVCPVDVFDGVGIRKAVYIPFPQATPLYAAIDWENCIRCELCVKAC 293

Query: 51  PVDAIKPDTEPGLELWLKIN 70
             +AI  +     +  + IN
Sbjct: 294 KPNAIDFN---QKQEEIDIN 310


>gi|301062088|ref|ZP_07202789.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
 gi|300443814|gb|EFK07878.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
          Length = 1394

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V  E C  C    CV  CP +      + +  I P  C  CG+C  ECP   I+      
Sbjct: 1322 VDQEKCAACL--VCVRSCPYNVPKINADGVSEIDPALCRGCGICVSECPAKVIQLGWYED 1379

Query: 63   LELWLKINS 71
             ++  K+ +
Sbjct: 1380 DQVMSKVEA 1388


>gi|237706667|ref|ZP_04537148.1| electron transporter hydN [Escherichia sp. 3_2_53FAA]
 gi|226899707|gb|EEH85966.1| electron transporter hydN [Escherichia sp. 3_2_53FAA]
          Length = 182

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 65  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 111


>gi|184153593|ref|YP_001841934.1| nitrate reductase beta subunit [Lactobacillus reuteri JCM 1112]
 gi|325682220|ref|ZP_08161737.1| respiratory nitrate reductase, beta subunit [Lactobacillus reuteri
           MM4-1A]
 gi|183224937|dbj|BAG25454.1| nitrate reductase beta subunit [Lactobacillus reuteri JCM 1112]
 gi|324978059|gb|EGC15009.1| respiratory nitrate reductase, beta subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 519

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNAPCVASCPSGAMYKRDEDGIVLVDQERCRGWRFCMTGCPYKKVYFN 234

Query: 59  TEPGLEL 65
            +     
Sbjct: 235 WKTHKAE 241


>gi|219668366|ref|YP_002458801.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538626|gb|ACL20365.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 192

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    CV+ CP    +  E+       ++CI C  C   CP  A +   E
Sbjct: 57  ACNHCAEAKCVKGCPTGAMHYAEDGTVQHDKNKCIGCKYCIWNCPYGAPQFLEE 110


>gi|303241136|ref|ZP_07327645.1| methyl-accepting chemotaxis sensory transducer [Acetivibrio
          cellulolyticus CD2]
 gi|302591396|gb|EFL61135.1| methyl-accepting chemotaxis sensory transducer [Acetivibrio
          cellulolyticus CD2]
          Length = 632

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 6  TENCILCKHTDCVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C+ C    C+ VCPV+        +G+++  I   +CI CG C   C   A     +
Sbjct: 10 EEKCVGCNK--CIYVCPVEGANISYIKDGKSYTKIDESKCITCGSCINACDHQARSYQDD 67


>gi|283853883|ref|ZP_06371097.1| nitroreductase [Desulfovibrio sp. FW1012B]
 gi|283570725|gb|EFC18771.1| nitroreductase [Desulfovibrio sp. FW1012B]
          Length = 300

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  E C  C    CV +CP          L      CI CG CE  CP  A+
Sbjct: 8  IDAEACQGC--GACVALCPSGVLAFAGGRLVARQTGCIGCGHCEAVCPAGAV 57


>gi|317054480|ref|YP_004118505.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pantoea sp. At-9b]
 gi|316952475|gb|ADU71949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pantoea sp.
           At-9b]
          Length = 181

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|256810207|ref|YP_003127576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793407|gb|ACV24076.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 657

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECIDCG 44
           YV  + C  C    C  VCP                  V           I  + CI CG
Sbjct: 239 YVDEDVCTGC--GACAAVCPIEVPNEFDLGLGTRKAIYVPFPQAVPLIYTIDMEHCIRCG 296

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +CE  C   AI+ D +P    
Sbjct: 297 LCEKACGPGAIRYDQKPEEIK 317



 Score = 37.3 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + C  C    C ++CP +        G     ++   C  CG C   CP  A++
Sbjct: 576 AVVDEDVCGGC--QVCAKMCPYNAISYVEKDGHLVAQVNDVACKGCGACAGACPSGAMQ 632


>gi|296108767|ref|YP_003615716.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295433581|gb|ADG12752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 150

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C+ C+   C+E+CPVD  Y  E    ++ ++CI C +C   CP+ AI    
Sbjct: 42 CMQCEKAPCMEICPVDAIYLEEGIPIVNKEKCIGCAMCVIACPIGAIFVKD 92


>gi|269925977|ref|YP_003322600.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789637|gb|ACZ41778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 270

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           ++ C  C    C+E CP       E   + I PD C  CG C P CP 
Sbjct: 88  SDVCKHCAVAGCLEACPTGAIIRTEFGTVYIQPDICNGCGYCVPACPF 135


>gi|170692904|ref|ZP_02884066.1| Nitrate reductase [Burkholderia graminis C4D1M]
 gi|170142560|gb|EDT10726.1| Nitrate reductase [Burkholderia graminis C4D1M]
          Length = 249

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +   
Sbjct: 183 CEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWKSRQ 239


>gi|323720325|gb|EGB29421.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis CDC1551A]
          Length = 555

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|307301099|ref|ZP_07580868.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
 gi|307317833|ref|ZP_07597271.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306896595|gb|EFN27343.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306904054|gb|EFN34640.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
          Length = 163

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFSTETREEL------YYDKEKLLANGDRWERE 151


>gi|257459788|ref|ZP_05624895.1| anaeroBic dimethyl sulfoxide reductase chain B [Campylobacter
           gracilis RM3268]
 gi|257442804|gb|EEV17940.1| anaeroBic dimethyl sulfoxide reductase chain B [Campylobacter
           gracilis RM3268]
          Length = 193

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C++C+ + CV+VCP    ++ ++ +  I    C+ C  C   CP DA   D
Sbjct: 62  SCVMCEDSPCVDVCPTGASFKTKDGVTLIDERLCVSCKYCILACPYDARFVD 113


>gi|240172913|ref|ZP_04751572.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium kansasii
           ATCC 12478]
          Length = 293

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I      
Sbjct: 113 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIDRREGD 169


>gi|238752180|ref|ZP_04613661.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC
           43380]
 gi|238709551|gb|EEQ01788.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC
           43380]
          Length = 207

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  ENCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIEM 164


>gi|254037752|ref|ZP_04871810.1| electron transporter hydN [Escherichia sp. 1_1_43]
 gi|332280633|ref|ZP_08393046.1| electron transporter hydN [Shigella sp. D9]
 gi|226839376|gb|EEH71397.1| electron transporter hydN [Escherichia sp. 1_1_43]
 gi|332102985|gb|EGJ06331.1| electron transporter hydN [Shigella sp. D9]
          Length = 182

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 65  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 111


>gi|213582546|ref|ZP_03364372.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 122

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|213424374|ref|ZP_03357198.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 261

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|163859311|ref|YP_001633609.1| nitrate reductase, beta chain [Bordetella petrii DSM 12804]
 gi|163263039|emb|CAP45342.1| nitrate reductase, beta chain [Bordetella petrii]
          Length = 521

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y  E +  + +  D+C    +C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKVYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|325830137|ref|ZP_08163594.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|325487604|gb|EGC90042.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 178

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           V   C+ C++  C +VCP    Y  ++ +  +  ++CI C  C   CP 
Sbjct: 54  VPVQCMHCENAPCQQVCPTHATYTTDSGVVLVDEEKCIGCKYCMAACPY 102


>gi|298524660|ref|ZP_07012069.1| respiratory nitrate reductase beta subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308370641|ref|ZP_07666985.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu003]
 gi|308373058|ref|ZP_07667501.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu005]
 gi|308374238|ref|ZP_07667742.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu006]
 gi|308375385|ref|ZP_07668010.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu007]
 gi|308379997|ref|ZP_07669092.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu011]
 gi|298494454|gb|EFI29748.1| respiratory nitrate reductase beta subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308331320|gb|EFP20171.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu003]
 gi|308338943|gb|EFP27794.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu005]
 gi|308342611|gb|EFP31462.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu006]
 gi|308346500|gb|EFP35351.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu007]
 gi|308362950|gb|EFP51801.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu011]
          Length = 555

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|296283848|ref|ZP_06861846.1| NADH dehydrogenase subunit I [Citromicrobium bathyomarinum JL354]
          Length = 161

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAVCPAQAITIESEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  K +
Sbjct: 117 V--EGPNFEYSTETREEL------LYDKAKLLANGDKWE 147


>gi|284006931|emb|CBA72203.1| electron transport protein [Arsenophonus nasoniae]
          Length = 181

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A++  + P
Sbjct: 58  CRQCEDAPCANVCPNGAITRESDFVHVHQARCIGCKTCVVACPYGAMEVVSRP 110


>gi|269215524|ref|ZP_06159378.1| indolepyruvate ferredoxin oxidoreductase, IorA subunit [Slackia
           exigua ATCC 700122]
 gi|269131011|gb|EEZ62086.1| indolepyruvate ferredoxin oxidoreductase, IorA subunit [Slackia
           exigua ATCC 700122]
          Length = 580

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V  +C  CK   CV++ CP   F    N  +I P  C+ C  C   CP   I  ++E
Sbjct: 522 YAVKPDCRGCKM--CVQIGCPSISFDLSSNVASIDPALCVGCSQCAQVCPFSVIVKESE 578


>gi|261402830|ref|YP_003247054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369823|gb|ACX72572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 654

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           Y+    C  C    C EVCP++   E +                      I  + CIDCG
Sbjct: 240 YIDETKCTGC--GQCAEVCPIEVPNEFDMGLGMRKAIYKPFPQAVPSKYTIDKEHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   C  +AI  D +P  
Sbjct: 298 LCAKVCGPNAIDYDQKPEF 316



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIH--PDECIDCGVCEPECPVDAIKP 57
             V  E C  C    CV+ CP       E +  L        C  CG C   CP  A++ 
Sbjct: 577 ATVNKEICGGC--GVCVKQCPYGAPRLIEEDGKLVCDVIAALCKGCGTCVAGCPSGALEQ 634

Query: 58  DTEPGLELWLKI 69
           +    ++L+ +I
Sbjct: 635 NHFKTIQLYKQI 646


>gi|197122277|ref|YP_002134228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172126|gb|ACG73099.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 300

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           C+ C    C   CPV    +      + +P+ C+ C  C   CP D  K + 
Sbjct: 104 CMHCLAPGCASACPVKAMSKSPEGPVVYNPNRCMGCRYCMIACPFDVPKYEY 155


>gi|195037807|ref|XP_001990352.1| GH18285 [Drosophila grimshawi]
 gi|193894548|gb|EDV93414.1| GH18285 [Drosophila grimshawi]
          Length = 217

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|153954158|ref|YP_001394923.1| hypothetical protein CKL_1533 [Clostridium kluyveri DSM 555]
 gi|219854767|ref|YP_002471889.1| hypothetical protein CKR_1424 [Clostridium kluyveri NBRC 12016]
 gi|146347039|gb|EDK33575.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219568491|dbj|BAH06475.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 376

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +++ E C  C    C   C  +  +  +    + I+ + C+ CG C   C  DAI+   
Sbjct: 190 PHIIEEQCRGC--QRCQRECANNGLFFDDVKKKMTINIENCVGCGRCLGACNFDAIEF-- 245

Query: 60  EPGLELWLKINSEYATQ 76
                   ++N   A  
Sbjct: 246 -ANWSASEELNCRMAEY 261


>gi|307720654|ref|YP_003891794.1| nitrate reductase (quinol-dependent), transmembrane subunit
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978747|gb|ADN08782.1| nitrate reductase (quinol-dependent), transmembrane subunit
           [Sulfurimonas autotrophica DSM 16294]
          Length = 521

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C   +C+  CP + + +      +    D CI C  C   CP        E
Sbjct: 88  SCNHCIDPECLIGCPTESYIKIAETGIVVHDDDTCIGCQYCTWNCPYGVPVFHEE 142



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 17/91 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPVDAIKPDT 59
           + CI C++  C   CP       E    +         +       C   CP  AI+ + 
Sbjct: 120 DTCIGCQY--CTWNCPYGVPVFHEERNIVTKCHMCHERLDVEESPACVQACPAGAIEIEV 177

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSA 90
              +E W  +N +   Q          LP A
Sbjct: 178 -VNVEEW--LNRDIDEQANMPF-----LPDA 200


>gi|283471618|emb|CAQ50829.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 481

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 139 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 197

Query: 59  TEPGLEL 65
            +     
Sbjct: 198 WKTNKAE 204


>gi|262195926|ref|YP_003267135.1| oxidoreductase, iron-sulfur binding protein [Haliangium ochraceum
           DSM 14365]
 gi|262079273|gb|ACY15242.1| putative oxidoreductase, iron-sulfur binding protein [Haliangium
           ochraceum DSM 14365]
          Length = 974

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+H  C   CPV       + L  +  + CI    C   CP    + +      
Sbjct: 807 CQHCEHAPCEYACPVYATTHSPDGLNEMTYNRCIGTRFCSNNCPYKVRRFNWFEFQN 863


>gi|253573620|ref|ZP_04850963.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847148|gb|EES75153.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 335

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA----------IHPDECIDCGVCEPEC 50
           M +   E+CI C    C  VCP +CF   E              I    C  C  C   C
Sbjct: 249 MPHFKEESCIHC--AQCDNVCPDNCFVWEERPDKKGRPQMFLKGIDYQYCKGCLKCIHAC 306

Query: 51  PVDAIKPDTEPG 62
           P DA+  + E  
Sbjct: 307 PTDALSGEREEE 318


>gi|239907309|ref|YP_002954050.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239797175|dbj|BAH76164.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 223

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   C+ VCP        + + +  P  C   G C   CP      D+
Sbjct: 95  CNQCREAPCLAVCPNGAVRREADGIVVTDPKRCTGAGACVTACPYGMRFIDS 146


>gi|254455959|ref|ZP_05069388.1| NADH dehydrogenase i chain i [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082961|gb|EDZ60387.1| NADH dehydrogenase i chain i [Candidatus Pelagibacter sp. HTCC7211]
          Length = 161

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 37/101 (36%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVDAI
Sbjct: 59  EERCIACKL--CEAVCPAQAITIESAAREDGSRKTTRYDIDMMKCIYCGLCEESCPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E         TK++ L +  + + V
Sbjct: 117 VQ--GPNFEFSTETREEL------YYTKEKLLDNGDRWENV 149


>gi|168187953|ref|ZP_02622588.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|169294213|gb|EDS76346.1| conserved domain protein [Clostridium botulinum C str. Eklund]
          Length = 57

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + ++C+ C    C   CPV    +G++   I    CIDCG C   CPV AI
Sbjct: 1  MAFKIGDSCVSC--GSCASECPVGAISQGDSQFDIDASACIDCGNCANVCPVGAI 53


>gi|84489021|ref|YP_447253.1| Fe-S center containing protein [Methanosphaera stadtmanae DSM 3091]
 gi|84372340|gb|ABC56610.1| predicted Fe-S center containing protein [Methanosphaera stadtmanae
           DSM 3091]
          Length = 367

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++    C+ C    C++ CP +      +   I+ ++CI C  C   CP +AIK +   
Sbjct: 189 PFISKIACLACN--VCIDACPENAITVDTH-AHINYEKCIGCNDCIGACPKNAIKLNKI- 244

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
             E +++   EYA                     VK K +K  
Sbjct: 245 NSEEFIESMMEYA------------------YGSVKDKDDKVL 269


>gi|56696676|ref|YP_167037.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56678413|gb|AAV95079.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 649

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             C +  C+++CP        + +AI P  C  CG C   CP  AI  +  
Sbjct: 276 RGCSN--CLDICPTGAITSAGDHVAIDPMVCAGCGACAALCPSTAITYEAP 324



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   ++  E  C+ CG+C   CP  AI
Sbjct: 496 VNTDACTLCL--SCVSLCPSGALIDNPDLPQLNFQEDACLQCGICRTICPEQAI 547


>gi|219668159|ref|YP_002458594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538419|gb|ACL20158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 421

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + CI C    C +VCPV         EG+    +  + C+ CG+C   CP   I
Sbjct: 290 IAQECIGC--GKCEKVCPVLAISMSTNAEGKKVAQVDHEVCLGCGICVRSCPKKVI 343


>gi|327538927|gb|EGF25565.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rhodopirellula baltica WH47]
          Length = 1135

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           +V E   C+ C+   C +VCPV    +  E   A+  + CI    C   CP  
Sbjct: 877 IVQEPVTCMHCETAPCEQVCPVAATVHTNEGLNAMTYNRCIGTRYCANNCPYK 929


>gi|322433726|ref|YP_004215938.1| Fe-S-cluster-containing hydrogenase [Acidobacterium sp. MP5ACTX9]
 gi|321161453|gb|ADW67158.1| Fe-S-cluster-containing hydrogenase [Acidobacterium sp. MP5ACTX9]
          Length = 1071

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
            +     C  C++  C +VCPV         +  +  + C+    C   CP  
Sbjct: 896 AHFQPMACQHCENAGCEQVCPVGATVHTPEGINTMVYNRCVGTRYCSNNCPYK 948


>gi|239908498|ref|YP_002955240.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798365|dbj|BAH77354.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 321

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVD 53
           +   C+ C H  C E+CP        +  + I  + C+    C   CP  
Sbjct: 117 IPRRCMHCVHPPCAELCPWGSAVRHDDGAVVIDSNICLGGSKCRDVCPWH 166


>gi|219667887|ref|YP_002458322.1| nitroreductase [Desulfitobacterium hafniense DCB-2]
 gi|219538147|gb|ACL19886.1| nitroreductase [Desulfitobacterium hafniense DCB-2]
          Length = 278

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  + +E CI C    CV  C        E    I   +C+ CG C   CP DA+     
Sbjct: 6  MVNIDSEKCIGC--GLCVRDCFPGKIVIVEGKAQIKNKQCMQCGHCIAICPQDAVSMIEY 63

Query: 61 PGLELWLKINSEYA 74
             E+      E++
Sbjct: 64 NMAEVKAYDRREFS 77


>gi|221069698|ref|ZP_03545803.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni KF-1]
 gi|220714721|gb|EED70089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni KF-1]
          Length = 433

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I  
Sbjct: 17 IDPEICIRCN--TCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSIDN 68


>gi|117625117|ref|YP_854105.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli APEC O1]
 gi|218559878|ref|YP_002392791.1| oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli
           S88]
 gi|227888433|ref|ZP_04006238.1| 4Fe-4S binding protein [Escherichia coli 83972]
 gi|300980322|ref|ZP_07174976.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301049332|ref|ZP_07196302.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|306812213|ref|ZP_07446411.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli NC101]
 gi|115514241|gb|ABJ02316.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli APEC O1]
 gi|218366647|emb|CAR04401.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli S88]
 gi|227834702|gb|EEJ45168.1| 4Fe-4S binding protein [Escherichia coli 83972]
 gi|281179891|dbj|BAI56221.1| putative oxidoreductase [Escherichia coli SE15]
 gi|294493750|gb|ADE92506.1| 4Fe-4S binding protein [Escherichia coli IHE3034]
 gi|300298931|gb|EFJ55316.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300409330|gb|EFJ92868.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|305854251|gb|EFM54689.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli NC101]
 gi|307554862|gb|ADN47637.1| putative electron transport protein YgfS [Escherichia coli ABU
           83972]
 gi|307625542|gb|ADN69846.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli UM146]
 gi|315289453|gb|EFU48848.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|315293883|gb|EFU53235.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|323951676|gb|EGB47551.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957394|gb|EGB53116.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|126179637|ref|YP_001047602.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125862431|gb|ABN57620.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 424

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           Y++ + C  C   DC+ +CPV+ +   +                    +    + CI+CG
Sbjct: 98  YILEDECNGC--GDCIAICPVEVYNRFDAGIGVRKAIYKPHAQAVPDIVVKDNEHCIECG 155

Query: 45  VCEPECPVDAIKPDTEPG 62
           +C   C  +AI  + E  
Sbjct: 156 LCYDVCGKEAILREDEER 173


>gi|194466371|ref|ZP_03072358.1| nitrate reductase, beta subunit [Lactobacillus reuteri 100-23]
 gi|227544537|ref|ZP_03974586.1| nitrate reductase [Lactobacillus reuteri CF48-3A]
 gi|300908126|ref|ZP_07125595.1| respiratory nitrate reductase, beta subunit [Lactobacillus reuteri
           SD2112]
 gi|183398023|gb|ACC62477.1| nitrate reductase beta subunit [Lactobacillus reuteri]
 gi|194453407|gb|EDX42304.1| nitrate reductase, beta subunit [Lactobacillus reuteri 100-23]
 gi|227185489|gb|EEI65560.1| nitrate reductase [Lactobacillus reuteri CF48-3A]
 gi|300894742|gb|EFK88095.1| respiratory nitrate reductase, beta subunit [Lactobacillus reuteri
           SD2112]
          Length = 519

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNAPCVASCPSGAMYKRDEDGIVLVDQERCRGWRFCMTGCPYKKVYFN 234

Query: 59  TEPGLEL 65
            +     
Sbjct: 235 WKTHKAE 241


>gi|15965027|ref|NP_385380.1| NADH dehydrogenase subunit I [Sinorhizobium meliloti 1021]
 gi|81634769|sp|Q92QP4|NUOI1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|15074206|emb|CAC45853.1| Probable NADH-ubiquinone oxidoreductase chain I [Sinorhizobium
           meliloti 1021]
          Length = 164

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 61  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 118

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 119 IV--EGPNFEFSTETREEL------YYDKEKLLANGDRWERE 152


>gi|83953899|ref|ZP_00962620.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1]
 gi|83841844|gb|EAP81013.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1]
          Length = 164

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFSTETREELF------YDKAKLLDNGERWEAE 152


>gi|157162346|ref|YP_001459664.1| 4Fe-4S binding protein [Escherichia coli HS]
 gi|188491838|ref|ZP_02999108.1| 4Fe-4S binding protein [Escherichia coli 53638]
 gi|194436779|ref|ZP_03068879.1| 4Fe-4S binding protein [Escherichia coli 101-1]
 gi|253772274|ref|YP_003035105.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|293412244|ref|ZP_06654967.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|297516963|ref|ZP_06935349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli OP50]
 gi|300925135|ref|ZP_07141049.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|312972874|ref|ZP_07787047.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|157068026|gb|ABV07281.1| 4Fe-4S binding protein [Escherichia coli HS]
 gi|188487037|gb|EDU62140.1| 4Fe-4S binding protein [Escherichia coli 53638]
 gi|194424261|gb|EDX40248.1| 4Fe-4S binding protein [Escherichia coli 101-1]
 gi|242378418|emb|CAQ33197.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BL21(DE3)]
 gi|253323318|gb|ACT27920.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|291469015|gb|EFF11506.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|300418737|gb|EFK02048.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|310332816|gb|EFQ00030.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|323960818|gb|EGB56439.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971677|gb|EGB66906.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|332344780|gb|AEE58114.1| hydrogenase-4 component A [Escherichia coli UMNK88]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|327401152|ref|YP_004341991.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316660|gb|AEA47276.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 372

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ E C  C    C E+CP++                 I  ++CI C  C   C   AI 
Sbjct: 197 VINEKCDGC--GRCTEICPINAISCHVAGDTGNRTIYTIDRNKCIGCTGCYEVCRKRAID 254

Query: 57  PDT 59
            + 
Sbjct: 255 VEW 257


>gi|313205341|ref|YP_004043998.1| ferredoxin [Paludibacter propionicigenes WB4]
 gi|312444657|gb|ADQ81013.1| ferredoxin [Paludibacter propionicigenes WB4]
          Length = 56

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++E+CI C    C+  CPV+   EG+    I  D C DCG C   CP +AI
Sbjct: 1  MAYVISEDCIAC--GSCISECPVEAISEGD-IYVIDADVCTDCGTCADVCPSEAI 52


>gi|312072386|ref|XP_003139042.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa]
 gi|307765791|gb|EFO25025.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa]
          Length = 206

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 104 EERCIACKL--CEAICPAQAITIEAEARPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 161

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  + +  
Sbjct: 162 VEGP----------NFEYSTETHEELLYNKEKLLLNGDRWEPE 194


>gi|302389738|ref|YP_003825559.1| hypothetical protein Toce_1178 [Thermosediminibacter oceani DSM
           16646]
 gi|302200366|gb|ADL07936.1| conserved hypothetical protein [Thermosediminibacter oceani DSM
           16646]
          Length = 378

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
              VT  C+ C   +C   CP            +   +CI C  C   CP  A+
Sbjct: 314 PVFVTRKCLGC--GECYATCPAKAITIKNKKAVVDLKKCIRCYCCHELCPEKAV 365


>gi|269140235|ref|YP_003296936.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Edwardsiella tarda EIB202]
 gi|267985896|gb|ACY85725.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Edwardsiella tarda EIB202]
 gi|304560065|gb|ADM42729.1| Formate hydrogenlyase subunit 2 [Edwardsiella tarda FL6-60]
          Length = 204

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI
Sbjct: 51 CHHCEDAPCALVCPVNAITRQDGAIQLNESLCVGCKLCGIACPFGAI 97


>gi|238757228|ref|ZP_04618415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia aldovae ATCC
          35236]
 gi|238704606|gb|EEP97136.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia aldovae ATCC
          35236]
          Length = 158

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 35 CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGAMNVVTKQVEVMF 92


>gi|238762649|ref|ZP_04623619.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC
           33638]
 gi|238699294|gb|EEP92041.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC
           33638]
          Length = 207

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  ENCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIEM 164


>gi|254439636|ref|ZP_05053130.1| cytochrome c oxidase accessory protein CcoG [Octadecabacter
           antarcticus 307]
 gi|198255082|gb|EDY79396.1| cytochrome c oxidase accessory protein CcoG [Octadecabacter
           antarcticus 307]
          Length = 477

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCPV               ECI CG+C   C     K     GL  +L 
Sbjct: 259 CIDC--MACVNVCPVGIDIRDGQ-----QMECITCGLCIDACDDIMAKIGKPRGLVDYLS 311

Query: 69  INSEYATQWPNITTK 83
           ++ E A +    T +
Sbjct: 312 LDDEEAERNAQPTKR 326


>gi|118359716|ref|XP_001013096.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Tetrahymena thermophila]
 gi|89294863|gb|EAR92851.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Tetrahymena thermophila SB210]
          Length = 324

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 35/113 (30%), Gaps = 20/113 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP                      I   +CI CG C+  CPVDAI
Sbjct: 221 EERCIACKL--CQSACPARAITIETEPRPDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 278

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                     +L  +  Y           + L +  K +    +  +Y    P
Sbjct: 279 VEGPNYEQTAYLHEDLFYDKY--------KLLENGDKWEPQIARNIEYLINQP 323


>gi|87162020|ref|YP_494977.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88196320|ref|YP_501142.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|282917747|ref|ZP_06325497.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|87127994|gb|ABD22508.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87203878|gb|ABD31688.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|269941979|emb|CBI50391.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318032|gb|EFB48392.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|323439620|gb|EGA97339.1| nitrate reductase beta chain [Staphylococcus aureus O11]
 gi|323442714|gb|EGB00341.1| nitrate reductase beta chain [Staphylococcus aureus O46]
 gi|329315082|gb|AEB89495.1| Nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 481

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 139 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 197

Query: 59  TEPGLEL 65
            +     
Sbjct: 198 WKTNKAE 204


>gi|15840605|ref|NP_335642.1| nitrate reductase, beta subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|254231433|ref|ZP_04924760.1| respiratory nitrate reductase (beta chain) narH [Mycobacterium
           tuberculosis C]
 gi|254364065|ref|ZP_04980111.1| respiratory nitrate reductase (beta chain) narH [Mycobacterium
           tuberculosis str. Haarlem]
 gi|13880786|gb|AAK45456.1| nitrate reductase, beta subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|124600492|gb|EAY59502.1| respiratory nitrate reductase (beta chain) narH [Mycobacterium
           tuberculosis C]
 gi|134149579|gb|EBA41624.1| respiratory nitrate reductase (beta chain) narH [Mycobacterium
           tuberculosis str. Haarlem]
          Length = 558

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 185 CEHCLNPSCVASCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 235


>gi|331001428|ref|ZP_08325048.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329568310|gb|EGG50121.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 238

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    C+ VCPV    +   +  + +   +CI CG C   CP DA +   +   E
Sbjct: 105 CNHCSEPACIPVCPVKAISKEAKYGAVRVDSSKCISCGACRAACPWDAPQYYKDLQAE 162


>gi|288559375|ref|YP_003422861.1| CoB--CoM heterodisulfide reductase subunit A HdrA
           [Methanobrevibacter ruminantium M1]
 gi|288542085|gb|ADC45969.1| CoB--CoM heterodisulfide reductase subunit A HdrA
           [Methanobrevibacter ruminantium M1]
          Length = 660

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLA-----IHPDECIDCG 44
           YV  ++C  C    C EVCP             V   Y            I  + CIDCG
Sbjct: 246 YVKEDDCTGC--GQCQEVCPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKNYCIDCG 303

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +CE  C  DAI  D EP    
Sbjct: 304 LCETVCGPDAIDRDMEPEEIE 324



 Score = 38.0 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            T  C  C+   CVE+CP           +   AI+   C  CG C   CP  A+  +  
Sbjct: 585 DTTVCGACE--VCVELCPFGAVSIEGEGADKHAAINVALCKGCGTCVGACPSGAMNQNHF 642

Query: 61  PGLELWLKINSEY 73
              ++  +I +  
Sbjct: 643 KTEQIMAQIAAAL 655


>gi|242238712|ref|YP_002986893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
 gi|242130769|gb|ACS85071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 180

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        + + +  ++CI C  C   CP  A+   ++P
Sbjct: 57  CRHCEDAPCANVCPNGAIVRAGDHIKVQQEKCIGCKTCVVACPYGAMTVISKP 109


>gi|213865515|ref|ZP_03387634.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
          subsp. enterica serovar Typhi str. M223]
          Length = 209

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + +
Sbjct: 45 CEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWK 98


>gi|304314565|ref|YP_003849712.1| polyferredoxin [Methanothermobacter marburgensis str. Marburg]
 gi|6996551|emb|CAB75573.1| polyferredoxin [Methanothermobacter thermautotrophicus]
 gi|302588024|gb|ADL58399.1| polyferredoxin [Methanothermobacter marburgensis str. Marburg]
          Length = 251

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT+ C  C    C   CP      GE         CI CG C   CP DAIK + E
Sbjct: 129 VTDKCTAC--GTCERFCPTGAIRVGETAAV-DRSICIGCGACVNVCPSDAIKLERE 181



 Score = 40.0 bits (92), Expect = 0.098,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C+ C    C E CP       +  + +  D+CI C VC  +CPV A+K +
Sbjct: 193 VDQDACVECL--VCEENCPTGAIRIEDGEVVVDGDKCILCEVCSSKCPVAALKLE 245



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAI-------HPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    CV VCP D    E E    I         D C++C VCE  CP  AI+ +  
Sbjct: 161 CIGC--GACVNVCPSDAIKLERELGPVIETRRLMVDQDACVECLVCEENCPTGAIRIEDG 218

Query: 61  P 61
            
Sbjct: 219 E 219


>gi|110643034|ref|YP_670764.1| putative electron transport protein YgfS [Escherichia coli 536]
 gi|191173216|ref|ZP_03034747.1| 4Fe-4S binding protein [Escherichia coli F11]
 gi|300995684|ref|ZP_07181212.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|331659014|ref|ZP_08359956.1| putative electron transport protein YgfS [Escherichia coli TA206]
 gi|110344626|gb|ABG70863.1| putative electron transport protein YgfS [Escherichia coli 536]
 gi|190906467|gb|EDV66075.1| 4Fe-4S binding protein [Escherichia coli F11]
 gi|300304792|gb|EFJ59312.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|315295672|gb|EFU54992.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|324011766|gb|EGB80985.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
 gi|331053596|gb|EGI25625.1| putative electron transport protein YgfS [Escherichia coli TA206]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|114563171|ref|YP_750684.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334464|gb|ABI71846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 190

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           +C  C+   CV VCP    Y  EN L  IH D+C+ C  C   CP      
Sbjct: 59  SCQQCEDAPCVSVCPTGAAYIDENGLVSIHNDKCVGCMYCVAACPYKVRFM 109


>gi|15608302|ref|NP_215678.1| respiratory nitrate reductase subunit beta NarH [Mycobacterium
           tuberculosis H37Rv]
 gi|31792356|ref|NP_854849.1| respiratory nitrate reductase subunit beta NarH [Mycobacterium
           bovis AF2122/97]
 gi|121637094|ref|YP_977317.1| putative respiratory nitrate reductase subunit beta narH
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660950|ref|YP_001282473.1| putative respiratory nitrate reductase subunit beta NarH
           [Mycobacterium tuberculosis H37Ra]
 gi|148822378|ref|YP_001287132.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis F11]
 gi|167970132|ref|ZP_02552409.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis H37Ra]
 gi|215403000|ref|ZP_03415181.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis 02_1987]
 gi|215410790|ref|ZP_03419598.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215426470|ref|ZP_03424389.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis T92]
 gi|215430045|ref|ZP_03427964.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis EAS054]
 gi|215445338|ref|ZP_03432090.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis T85]
 gi|218752856|ref|ZP_03531652.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis GM 1503]
 gi|219557052|ref|ZP_03536128.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis T17]
 gi|224989567|ref|YP_002644254.1| putative respiratory nitrate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253799794|ref|YP_003032795.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis KZN 1435]
 gi|260186095|ref|ZP_05763569.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis CPHL_A]
 gi|260200210|ref|ZP_05767701.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis T46]
 gi|260204413|ref|ZP_05771904.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis K85]
 gi|289442595|ref|ZP_06432339.1| nitrate reductase, beta subunit [Mycobacterium tuberculosis T46]
 gi|289446752|ref|ZP_06436496.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555049|ref|ZP_06444259.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis KZN 605]
 gi|289569166|ref|ZP_06449393.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis T17]
 gi|289573820|ref|ZP_06454047.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis K85]
 gi|289744906|ref|ZP_06504284.1| respiratory nitrate reductase subunit beta NarH [Mycobacterium
           tuberculosis 02_1987]
 gi|289749705|ref|ZP_06509083.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis T92]
 gi|289753232|ref|ZP_06512610.1| respiratory nitrate reductase subunit beta NarH [Mycobacterium
           tuberculosis EAS054]
 gi|289757258|ref|ZP_06516636.1| respiratory nitrate reductase subunit beta NarH [Mycobacterium
           tuberculosis T85]
 gi|289761308|ref|ZP_06520686.1| respiratory nitrate reductase (beta chain) narH [Mycobacterium
           tuberculosis GM 1503]
 gi|294993351|ref|ZP_06799042.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis 210]
 gi|297633709|ref|ZP_06951489.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730696|ref|ZP_06959814.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis KZN R506]
 gi|306775332|ref|ZP_07413669.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu001]
 gi|306781760|ref|ZP_07420097.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu002]
 gi|306788246|ref|ZP_07426568.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu004]
 gi|306802855|ref|ZP_07439523.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu008]
 gi|306967243|ref|ZP_07479904.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu009]
 gi|306971426|ref|ZP_07484087.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu010]
 gi|307083715|ref|ZP_07492828.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu012]
 gi|313658026|ref|ZP_07814906.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis KZN V2475]
 gi|2117200|emb|CAB09021.1| PROBABLE RESPIRATORY NITRATE REDUCTASE (BETA CHAIN) NARH
           [Mycobacterium tuberculosis H37Rv]
 gi|31617944|emb|CAD94055.1| PROBABLE RESPIRATORY NITRATE REDUCTASE (BETA CHAIN) NARH
           [Mycobacterium bovis AF2122/97]
 gi|121492741|emb|CAL71211.1| Probable respiratory nitrate reductase (beta chain) narH
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148505102|gb|ABQ72911.1| putative respiratory nitrate reductase subunit beta NarH
           [Mycobacterium tuberculosis H37Ra]
 gi|148720905|gb|ABR05530.1| respiratory nitrate reductase beta subunit narH [Mycobacterium
           tuberculosis F11]
 gi|224772680|dbj|BAH25486.1| putative respiratory nitrate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253321297|gb|ACT25900.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415514|gb|EFD12754.1| nitrate reductase, beta subunit [Mycobacterium tuberculosis T46]
 gi|289419710|gb|EFD16911.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis CPHL_A]
 gi|289439681|gb|EFD22174.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis KZN 605]
 gi|289538251|gb|EFD42829.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis K85]
 gi|289542920|gb|EFD46568.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis T17]
 gi|289685434|gb|EFD52922.1| respiratory nitrate reductase subunit beta NarH [Mycobacterium
           tuberculosis 02_1987]
 gi|289690292|gb|EFD57721.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis T92]
 gi|289693819|gb|EFD61248.1| respiratory nitrate reductase subunit beta NarH [Mycobacterium
           tuberculosis EAS054]
 gi|289708814|gb|EFD72830.1| respiratory nitrate reductase (beta chain) narH [Mycobacterium
           tuberculosis GM 1503]
 gi|289712822|gb|EFD76834.1| respiratory nitrate reductase subunit beta NarH [Mycobacterium
           tuberculosis T85]
 gi|308216135|gb|EFO75534.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu001]
 gi|308325514|gb|EFP14365.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu002]
 gi|308335137|gb|EFP23988.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu004]
 gi|308350420|gb|EFP39271.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu008]
 gi|308355067|gb|EFP43918.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu009]
 gi|308359022|gb|EFP47873.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu010]
 gi|308366600|gb|EFP55451.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis SUMu012]
 gi|326902786|gb|EGE49719.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis W-148]
 gi|328459539|gb|AEB04962.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis KZN 4207]
          Length = 558

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 185 CEHCLNPSCVASCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 235


>gi|255530204|ref|YP_003090576.1| iron-sulfur binding oxidoreductase [Pedobacter heparinus DSM 2366]
 gi|255343188|gb|ACU02514.1| putative iron-sulfur binding oxidoreductase [Pedobacter heparinus
           DSM 2366]
          Length = 1026

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +         
Sbjct: 850 CQHCDHAPCETVCPVLATVHSSDGLNHMAYNRCVGTRYCANNCPYKVRRFNWFNYWNDSR 909

Query: 68  K---INSEYAT--QWPNITTK 83
               +N+E+      P++TT+
Sbjct: 910 FDNYLNNEFTQLVLNPDVTTR 930


>gi|149277155|ref|ZP_01883297.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pedobacter sp. BAL39]
 gi|149232032|gb|EDM37409.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pedobacter sp. BAL39]
          Length = 1035

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +         
Sbjct: 859 CQHCDHAPCETVCPVLATVHSSDGLNHMAYNRCVGTRYCANNCPYKVRRFNWFNYWNDSR 918

Query: 68  K---INSEYAT--QWPNITTK 83
               +N+E+      P++TT+
Sbjct: 919 FDNYLNNEFTQLVLNPDVTTR 939


>gi|152999082|ref|YP_001364763.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160873678|ref|YP_001552994.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|217971766|ref|YP_002356517.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|151363700|gb|ABS06700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160859200|gb|ABX47734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|217496901|gb|ACK45094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
 gi|315265908|gb|ADT92761.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 188

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH ++C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPYKVRFMNPE 112


>gi|15920962|ref|NP_376631.1| indolepyruvate oxidoreductase subunit A [Sulfolobus tokodaii str.
           7]
 gi|15621746|dbj|BAB65740.1| 598aa long hypothetical indolepyruvate oxidoreductase subunit A
           [Sulfolobus tokodaii str. 7]
          Length = 598

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V    C  C  T C +   CP     E +    I P  CI CG C P CP +AI    E 
Sbjct: 532 VDINKCTGC--TICYDYFTCPAIIPREDK-KAIIDPVLCIGCGACIPICPYNAISLKGE- 587

Query: 62  GLELWLKI 69
             + W ++
Sbjct: 588 IPKGWDEL 595


>gi|146296316|ref|YP_001180087.1| hypothetical protein Csac_1294 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409892|gb|ABP66896.1| protein of unknown function DUF362 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 375

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C   +C   CP            +   +CI C  C   CP  AI 
Sbjct: 317 ACIGC--AECFNACPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAIM 363


>gi|114566570|ref|YP_753724.1| signal transduction histidine kinase regulating C4-dicarboxylate
          transport system-like protein [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
 gi|114337505|gb|ABI68353.1| Signal transduction histidine kinase regulating C4-dicarboxylate
          transport system-like protein [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
          Length = 696

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPEC 50
           ENCI C    C+ VCPV    +G   +   H   CI CG C   C
Sbjct: 12 EENCINC--HQCIAVCPVKICSDGSGNVVKFHNHLCIGCGRCIEAC 55


>gi|46200681|ref|ZP_00207795.1| COG0369: Sulfite reductase, alpha subunit (flavoprotein)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 393

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          CI C    C E CPVD          +  D+C  C  C   CP  AI  
Sbjct: 14 CIRCN--TCEEACPVDAITHDGTNYVVSFDKCTGCRTCVSPCPTGAIDN 60


>gi|324005536|gb|EGB74755.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
          Length = 162

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|323169237|gb|EFZ54913.1| hypothetical protein SS53G_0407 [Shigella sonnei 53G]
          Length = 184

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|320662092|gb|EFX29493.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 303

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 111


>gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 595

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           V  + C  C    C +VCPV      +  +  I   +C+ C  C   CP +AI
Sbjct: 544 VAEDRCKKC--GICFKVCPVGAITWEKGKVAYIDKSKCVKCRECIVNCPFNAI 594


>gi|304411591|ref|ZP_07393204.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307306633|ref|ZP_07586375.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304350118|gb|EFM14523.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910601|gb|EFN41030.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 188

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH ++C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPYKVRFMNPE 112


>gi|291544581|emb|CBL17690.1| Iron only hydrogenase large subunit, C-terminal domain
          [Ruminococcus sp. 18P13]
          Length = 431

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELW 66
          C  C  T+C++ CP            I  + CIDCG C   CP  A     D+   ++ +
Sbjct: 16 CKGC--TNCIKRCPTQAIRVRNRKAEITNECCIDCGECIRICPHHAKEATYDSPDVMKQY 73


>gi|255993975|ref|ZP_05427110.1| conserved domain protein [Eubacterium saphenum ATCC 49989]
 gi|255993643|gb|EEU03732.1| conserved domain protein [Eubacterium saphenum ATCC 49989]
          Length = 55

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C+  CPV+   EG    +I P+ CIDCG C   C   AI
Sbjct: 1  MAYEITDACVAC--GACISECPVEAISEGSP-YSIDPNTCIDCGACASVCGAAAI 52


>gi|256078647|ref|XP_002575606.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238660848|emb|CAZ31839.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Schistosoma
           mansoni]
          Length = 206

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 104 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N EY+  T    +  K++ L +  + +
Sbjct: 162 VEGP----------NFEYSTETHEELLYNKEKLLQNGDRWE 192


>gi|167622495|ref|YP_001672789.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352517|gb|ABZ75130.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 235

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETDVAD 164

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 165 NCDFCLNSKLA 175


>gi|13471398|ref|NP_102964.1| NADH dehydrogenase subunit I [Mesorhizobium loti MAFF303099]
 gi|75543506|sp|Q98KR4|NUOI_RHILO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|14022140|dbj|BAB48750.1| NADH-ubiquinone dehydrogenase chain 9 [Mesorhizobium loti
           MAFF303099]
          Length = 164

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 61  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 118

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +  + +  
Sbjct: 119 IV--EGPNFEFATETREEL------YYDKDKLLANGDRWERE 152


>gi|158520317|ref|YP_001528187.1| iron-sulfur cluster-binding protein [Desulfococcus oleovorans Hxd3]
 gi|158509143|gb|ABW66110.1| iron-sulfur cluster-binding protein [Desulfococcus oleovorans Hxd3]
          Length = 328

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C++  C ++CP    Y+ +N +  I PD C+    C+  CP  
Sbjct: 124 IPRRCMHCENPPCSKLCPFGAAYQQDNGIVAISPDICMGGAKCKAVCPWH 173


>gi|158522074|ref|YP_001529944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510900|gb|ABW67867.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 385

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    CVE CPVD    G           CI CG+C   CP  AI
Sbjct: 317 IDEDTCTGC--GICVERCPVDAIVLGSEGTAVREEKYCIGCGICARFCPEGAI 367


>gi|26249298|ref|NP_755338.1| putative electron transport protein ygfS [Escherichia coli CFT073]
 gi|91212263|ref|YP_542249.1| putative electron transport protein YgfS [Escherichia coli UTI89]
 gi|237706472|ref|ZP_04536953.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|26109705|gb|AAN81908.1|AE016765_310 Putative electron transport protein ygfS [Escherichia coli CFT073]
 gi|91073837|gb|ABE08718.1| putative electron transport protein YgfS [Escherichia coli UTI89]
 gi|226899512|gb|EEH85771.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 163

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|119989|sp|P00196|FER_CLOBU RecName: Full=Ferredoxin
          Length = 55

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  AFVINDSCVSC--GACAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGAPNQE 55


>gi|317489675|ref|ZP_07948179.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911269|gb|EFV32874.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 178

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           V   C+ C++  C +VCP    Y  E+ +  +  ++CI C  C   CP 
Sbjct: 54  VPVQCMHCENAPCQQVCPTHATYTTESGVVLVDEEKCIGCKYCMAACPY 102


>gi|291548594|emb|CBL24856.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus torques L2-14]
          Length = 56

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+++ C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI
Sbjct: 1  MAHVISDECVSC--GTCEGECPVGAISEGDGKYEIDADACVDCGACEAACPTGAI 53


>gi|284162362|ref|YP_003400985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012359|gb|ADB58312.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 420

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 23/87 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGV 45
            V ENC  C   +C +VCPV+   + +                      I PD C  CG 
Sbjct: 111 FVNENCTAC--GECEKVCPVERPNDFDFGMDKTKAIYLPHDMAFPPIYVIDPDVCNKCGE 168

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE 72
           C   C  DAI  D +P     L IN++
Sbjct: 169 CVKVCKYDAINLDEQPQE---LTINAK 192


>gi|153872014|ref|ZP_02001030.1| Thiosulfate reductase subunit B [Beggiatoa sp. PS]
 gi|152071520|gb|EDN68970.1| Thiosulfate reductase  subunit B [Beggiatoa sp. PS]
          Length = 247

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    C+E CP    Y+ E+ + +     C  C +C P CP DA   + E
Sbjct: 59  RCQHCDDAPCIEACPSGAAYKREDGMVLQDDAICSGCELCVPACPYDARWLNPE 112


>gi|42527242|ref|NP_972340.1| ferredoxin, 2(4Fe-4S) [Treponema denticola ATCC 35405]
 gi|41817666|gb|AAS12251.1| ferredoxin, 2(4Fe-4S) [Treponema denticola ATCC 35405]
          Length = 56

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++  C  C    C   CPV+   E      I  D CI CG C   CPV+AI  +
Sbjct: 1  MAYKISNECTNC--AACESECPVNAISEAGGKHVIDADTCISCGACAGVCPVEAISEE 56


>gi|194437237|ref|ZP_03069335.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           101-1]
 gi|194423793|gb|EDX39782.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           101-1]
          Length = 223

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYH 138


>gi|326919862|ref|XP_003206196.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Meleagris gallopavo]
          Length = 209

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 107 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 164

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 165 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 197


>gi|323188717|gb|EFZ74002.1| hydrogenase-4 component A [Escherichia coli RN587/1]
          Length = 162

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|307130305|ref|YP_003882321.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Dickeya
           dadantii 3937]
 gi|306527834|gb|ADM97764.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Dickeya
           dadantii 3937]
          Length = 180

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        + + +  ++CI C  C   CP  A+   ++P
Sbjct: 57  CRHCEDAPCANVCPNGAIVHAGDHIRVQQEKCIGCKTCVVACPYGAMTVISKP 109


>gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus torques L2-14]
          Length = 622

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C + CPV+    + ++   I   +CI CG C   CP  A+  +
Sbjct: 569 IDPEKCKGCSK--CAKNCPVNAITGKIKSPFTIDNSKCIKCGSCIDNCPFGAVYTE 622


>gi|296123295|ref|YP_003631073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
 gi|296015635|gb|ADG68874.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
          Length = 594

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M + VT  C  C    C+  CPV+ + +      +    D+C  C  C   CP +  K  
Sbjct: 133 MQH-VTAACHHCLEPACMTACPVNAYEKDAFTGIVRHLDDQCFGCQYCTLACPYNVPKYH 191


>gi|291284040|ref|YP_003500858.1| Electron transport protein hydN [Escherichia coli O55:H7 str.
           CB9615]
 gi|209761974|gb|ACI79299.1| electron transport protein HydN [Escherichia coli]
 gi|290763913|gb|ADD57874.1| Electron transport protein hydN [Escherichia coli O55:H7 str.
           CB9615]
 gi|320662296|gb|EFX29693.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 175

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP      G+ F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRGKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|239627105|ref|ZP_04670136.1| nitroreductase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517251|gb|EEQ57117.1| nitroreductase [Clostridiales bacterium 1_7_47FAA]
          Length = 264

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CP            I    CI CG C   CP  A+  
Sbjct: 9  INPETCIGC--GLCKRDCPAGNIQIENKKAKILTQSCIMCGHCVAICPKAAVTM 60


>gi|220917060|ref|YP_002492364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954914|gb|ACL65298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 300

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           C+ C    C   CPV    +      + +P+ C+ C  C   CP D  K + 
Sbjct: 104 CMHCLAPGCASACPVKAMSKSPEGPVVYNPNRCMGCRYCMIACPFDVPKYEY 155


>gi|56697608|ref|YP_167977.1| NADH dehydrogenase subunit I [Ruegeria pomeroyi DSS-3]
 gi|81676166|sp|Q5LPS9|NUOI_SILPO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56679345|gb|AAV96011.1| NADH dehydrogenase I, I subunit [Ruegeria pomeroyi DSS-3]
          Length = 164

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKEKLLSNGDRWEAE 152


>gi|39936007|ref|NP_948283.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris CGA009]
 gi|192291662|ref|YP_001992267.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris TIE-1]
 gi|81562357|sp|Q6N5N2|NUOI1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|39649861|emb|CAE28383.1| NADH-ubiquinone dehydrogenase chain I [Rhodopseudomonas palustris
           CGA009]
 gi|192285411|gb|ACF01792.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           TIE-1]
          Length = 162

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 33/105 (31%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K   L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKARLLANGDRWEREIAK 153


>gi|320156338|ref|YP_004188717.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O]
 gi|319931650|gb|ADV86514.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O]
          Length = 552

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 171 DTDLCAHSSRGVKGCE--RCVDACPAGALTSQGSDKTGHHIEINPYLCQGVGTCATSCPT 228

Query: 53  DAIKPDTEPGLE--LWLK 68
           +AI        E   +++
Sbjct: 229 EAIHYALPNPQETQKFIE 246



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           T  C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 416 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACPEQ 463


>gi|294494960|ref|YP_003541453.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292665959|gb|ADE35808.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 638

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  +    C  C    C E+C  +          I+ D C +CG C   CP +A   D
Sbjct: 510 MPVIDETKCTGC--GRCTELCKFNAISIEGGKAVINRDLCGNCGWCVRGCPHEAALED 565



 Score = 37.3 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C +  CV V   D    G+    I   +C  CG C   C  +AI  +
Sbjct: 490 GCPN-SCVRVRDHDIGIMGQLMPVIDETKCTGCGRCTELCKFNAISIE 536


>gi|224536879|ref|ZP_03677418.1| hypothetical protein BACCELL_01755 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224521503|gb|EEF90608.1| hypothetical protein BACCELL_01755 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG+   AI P+ C DCG C   CP +AI P
Sbjct: 1  MAYVINDSCVAC--GTCIDECPVGAISEGD-IYAIDPETCTDCGTCADVCPSEAIHP 54


>gi|223984301|ref|ZP_03634445.1| hypothetical protein HOLDEFILI_01739 [Holdemania filiformis DSM
           12042]
 gi|223963734|gb|EEF68102.1| hypothetical protein HOLDEFILI_01739 [Holdemania filiformis DSM
           12042]
          Length = 384

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E C  C    C ++C      ++  + + I    C+ CG C   C  DAI+P  +  
Sbjct: 207 VNPEQCRSC--GMCQKICAHSALNFDENHKMHIDHSRCVGCGRCIGMCNFDAIEPMNDEA 264

Query: 63  LELWLKINSEYA 74
            ++  +  +EY+
Sbjct: 265 NDILNEKIAEYS 276


>gi|195953852|ref|YP_002122142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933464|gb|ACG58164.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 165

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y +  NC  C    CV  CP     + ++ L  +  + CI C  C   CP  AI  + E
Sbjct: 46  SYFMPMNCFHCDVAPCVYACPTSAMTKRDDGLVFVRDNLCIGCKACIIACPYGAISFNPE 105


>gi|184155537|ref|YP_001843877.1| nitrate reductase beta subunit [Lactobacillus fermentum IFO 3956]
 gi|183226881|dbj|BAG27397.1| nitrate reductase beta subunit [Lactobacillus fermentum IFO 3956]
          Length = 519

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 183 CEHCLNAPCVASCPSGAMYKRDEDGIVLVDQERCRGWRFCMTGCPYKKVYFNWKTHKAE 241


>gi|162452792|ref|YP_001615159.1| putative oxidoreductase, iron-sulfur binding [Sorangium cellulosum
           'So ce 56']
 gi|161163374|emb|CAN94679.1| putative oxidoreductase, iron-sulfur binding [Sorangium cellulosum
           'So ce 56']
          Length = 1011

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   C  VCPV+      + L  +  + C+    C   CP    + +     E
Sbjct: 838 CQHCEKAPCEYVCPVNATTHSPDGLNEMTYNRCVGTRFCSNNCPYKVRRFNWFDYGE 894


>gi|149370935|ref|ZP_01890530.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [unidentified eubacterium SCB49]
 gi|149355721|gb|EDM44279.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [unidentified eubacterium SCB49]
          Length = 1014

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     E   
Sbjct: 843 CQHCNHAPCETVCPVAATSHSRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYAE--- 899

Query: 68  KINSEY 73
             N E+
Sbjct: 900 --NDEF 903


>gi|118443510|ref|YP_878766.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT]
 gi|118133966|gb|ABK61010.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT]
          Length = 304

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C  C     +E C +   Y+ +N + I  ++CI+CG C   C  +A++ + E  
Sbjct: 170 DKCKSCGKCGVIEKCRMKAAYKEDNKVVIDREKCINCGKCIENCYFNAMETNQEGM 225


>gi|193064953|ref|ZP_03046029.1| iron-sulfur cluster-binding protein [Escherichia coli E22]
 gi|194430516|ref|ZP_03062989.1| iron-sulfur cluster-binding protein [Escherichia coli B171]
 gi|194440073|ref|ZP_03072128.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|301027651|ref|ZP_07190969.1| thiosulfate reductase electron transport protein phsb
          [Escherichia coli MS 196-1]
 gi|192927440|gb|EDV82058.1| iron-sulfur cluster-binding protein [Escherichia coli E22]
 gi|194411442|gb|EDX27791.1| iron-sulfur cluster-binding protein [Escherichia coli B171]
 gi|194420995|gb|EDX37027.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|299879222|gb|EFI87433.1| thiosulfate reductase electron transport protein phsb
          [Escherichia coli MS 196-1]
 gi|323152823|gb|EFZ39093.1| hypothetical protein ECEPECA14_5180 [Escherichia coli EPECa14]
 gi|323163480|gb|EFZ49306.1| hypothetical protein ECE128010_0331 [Escherichia coli E128010]
 gi|323937274|gb|EGB33553.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323962162|gb|EGB57757.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323973950|gb|EGB69122.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|110633384|ref|YP_673592.1| NADH dehydrogenase subunit I [Mesorhizobium sp. BNC1]
 gi|122966121|sp|Q11JJ8|NUOI_MESSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|110284368|gb|ABG62427.1| NADH dehydrogenase subunit I [Chelativorans sp. BNC1]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKDKLLANGDRWERE 151


>gi|331648630|ref|ZP_08349718.1| putative electron transport protein YgfS [Escherichia coli M605]
 gi|331042377|gb|EGI14519.1| putative electron transport protein YgfS [Escherichia coli M605]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|331006635|ref|ZP_08329919.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC1989]
 gi|330419550|gb|EGG93932.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC1989]
          Length = 216

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I     
Sbjct: 115 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVDECTGCDLCVEPCPVDCIDMLPV 172

Query: 58  DTEPGLELWLKINS 71
           +       W   N 
Sbjct: 173 EQTLQEWKWTAPNK 186


>gi|317478673|ref|ZP_07937828.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316905184|gb|EFV26983.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+    I P+ C +CG C   CP +AI P
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVGAISEGD-IYHIDPETCTECGTCADVCPSEAIHP 54


>gi|312602256|ref|YP_004022101.1| ferredoxin--NADP reductase [Burkholderia rhizoxinica HKI 454]
 gi|312169570|emb|CBW76582.1| Ferredoxin--NADP reductase (EC 1.18.1.2) [Burkholderia
          rhizoxinica HKI 454]
          Length = 406

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + CI C    C E CP D      N   ++   C  C  C P CP  AI    +   
Sbjct: 9  IDPQVCIRCN--TCEETCPNDAITHDANNYVVNAQVCNGCMACVPPCPTGAIDNWHQVLE 66

Query: 64 ELWLKINSEYATQWPNITTKKES 86
               I+++ A  W  +  ++  
Sbjct: 67 ADAYSIDAQLA--WEELPPRQSP 87


>gi|225166493|ref|ZP_03728134.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Opitutaceae bacterium TAV2]
 gi|224799266|gb|EEG17852.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Opitutaceae bacterium TAV2]
          Length = 630

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           C  C+   C  VCPV+        L  +  + CI    C   CP  
Sbjct: 417 CQHCELAPCETVCPVNATVHDNEGLNTMAYNRCIGTRYCANNCPYK 462


>gi|213021403|ref|ZP_03335850.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 207

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 13 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 69


>gi|198276095|ref|ZP_03208626.1| hypothetical protein BACPLE_02282 [Bacteroides plebeius DSM
          17135]
 gi|224026834|ref|ZP_03645200.1| hypothetical protein BACCOPRO_03591 [Bacteroides coprophilus DSM
          18228]
 gi|198270907|gb|EDY95177.1| hypothetical protein BACPLE_02282 [Bacteroides plebeius DSM
          17135]
 gi|224020070|gb|EEF78068.1| hypothetical protein BACCOPRO_03591 [Bacteroides coprophilus DSM
          18228]
          Length = 55

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C++ CPV    EG+   +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVGAISEGD-KYSINPDACTECGTCADVCPSEAIH 53


>gi|167762908|ref|ZP_02435035.1| hypothetical protein BACSTE_01272 [Bacteroides stercoris ATCC
           43183]
 gi|167699248|gb|EDS15827.1| hypothetical protein BACSTE_01272 [Bacteroides stercoris ATCC
           43183]
          Length = 330

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP   I     P  + 
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEVCPQGTIIALNFPPRKP 275

Query: 66  WLKINS---EYATQWPNITT-KKESLPSAAKMDGVKQK 99
             +  +   + A     +    K+ + + AK     +K
Sbjct: 276 KAEGEAVAPKVAEPVKKVAEAAKKPVETPAKPAEAPKK 313



 Score = 34.6 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C               +   +C  CG C   CP + I
Sbjct: 142 CLGC--GDCVSACQFGAIRMNPETGLPEVDESKCTACGACVKACPRNII 188


>gi|34541097|ref|NP_905576.1| ferredoxin, 4Fe-4S [Porphyromonas gingivalis W83]
 gi|188994759|ref|YP_001929011.1| ferredoxin 4Fe-4S [Porphyromonas gingivalis ATCC 33277]
 gi|34397412|gb|AAQ66475.1| ferredoxin, 4Fe-4S [Porphyromonas gingivalis W83]
 gi|188594439|dbj|BAG33414.1| ferredoxin 4Fe-4S [Porphyromonas gingivalis ATCC 33277]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG     I  D CIDCG C   CP +AI P
Sbjct: 1  MAYVINDSCVAC--GSCIDECPVSAISEGS-IYKIDADTCIDCGTCAAACPSEAIHP 54


>gi|260060672|ref|YP_003193752.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Robiginitalea biformata HTCC2501]
 gi|88784802|gb|EAR15971.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Robiginitalea biformata HTCC2501]
          Length = 1043

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLE 64
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +        E
Sbjct: 870 CQHCNHAPCETVCPVAATAHSRQGHNHMAYNRCVGTRYCANNCPYKVRRFNWFLYSDNEE 929

Query: 65  LWLKINSEYATQWPN 79
               +N++      N
Sbjct: 930 FDYHMNNDLGKMVLN 944


>gi|193070563|ref|ZP_03051502.1| 4Fe-4S binding protein [Escherichia coli E110019]
 gi|192956146|gb|EDV86610.1| 4Fe-4S binding protein [Escherichia coli E110019]
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|317405896|gb|EFV86178.1| ferredoxin-NADP oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 415

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D      N   + PD C  C  C P CP  +I  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDSNNYVVDPDICNSCMACVPPCPTGSIDN 66


>gi|299149444|ref|ZP_07042501.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_23]
 gi|298512631|gb|EFI36523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_23]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|283851307|ref|ZP_06368589.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio sp. FW1012B]
 gi|283573257|gb|EFC21235.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio sp. FW1012B]
          Length = 325

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C++  C  +CP        N    I P  C+    C   CP  
Sbjct: 120 IPRRCMHCQNPPCAGLCPWGAATRAGNGAVAIDPAICLGGAKCRTVCPWH 169


>gi|271502700|ref|YP_003335726.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270346255|gb|ACZ79020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 177

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCP D     ++ + +    CI C  C   CP  AI   T      
Sbjct: 57  CHQCENAPCASVCPHDALVRHQDSIQVISSRCIGCKSCVIACPFGAIDVVTPAFDGE 113


>gi|227514982|ref|ZP_03945031.1| nitrate reductase [Lactobacillus fermentum ATCC 14931]
 gi|260662940|ref|ZP_05863833.1| nitrate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN]
 gi|227086681|gb|EEI21993.1| nitrate reductase [Lactobacillus fermentum ATCC 14931]
 gi|260552561|gb|EEX25561.1| nitrate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN]
 gi|299783301|gb|ADJ41299.1| Nitrate reductase beta subunit [Lactobacillus fermentum CECT 5716]
          Length = 519

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 183 CEHCLNAPCVASCPSGAMYKRDEDGIVLVDQERCRGWRFCMTGCPYKKVYFNWKTHKAE 241


>gi|153812235|ref|ZP_01964903.1| hypothetical protein RUMOBE_02634 [Ruminococcus obeum ATCC 29174]
 gi|149831642|gb|EDM86729.1| hypothetical protein RUMOBE_02634 [Ruminococcus obeum ATCC 29174]
          Length = 311

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPV-----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            Y+  E CI C    CV+ CPV     D     EN       +CI C  C+  CP  AI+
Sbjct: 252 PYIEPERCIRC--GICVKSCPVPDKAVDFRKGRENPPVYDYKKCIRCFCCQEMCPEKAIQ 309


>gi|170728773|ref|YP_001762799.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814120|gb|ACA88704.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 240

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 110 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKETDVAD 169

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 170 NCDFCLNSKLA 180


>gi|18977101|ref|NP_578458.1| mulitcopper oxidase domain-containing protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892744|gb|AAL80853.1| multi domain protein containing corrinoid/iron-sulfur region
           [Pyrococcus furiosus DSM 3638]
          Length = 388

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIKPDTEP 61
             E C  C    CV+VCP  C+        +      +C+ CG C  +CP +A++ +   
Sbjct: 302 DGERCTGC--GVCVDVCPRACYEVDGENHTVMMPRADKCVQCGACIVQCPFEALRFEAPD 359


>gi|323492673|ref|ZP_08097817.1| formate dehydrogenase, iron-sulfur subunit [Vibrio brasiliensis LMG
           20546]
 gi|323313048|gb|EGA66168.1| formate dehydrogenase, iron-sulfur subunit [Vibrio brasiliensis LMG
           20546]
          Length = 202

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCKAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|315921831|ref|ZP_07918071.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695706|gb|EFS32541.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 343

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + C  C    CV  CP     +G+        +CI C  C   C   A   +T 
Sbjct: 272 DEDLCTHC--GLCVVRCPAGAITKGDELHT-DEAKCIKCCACVKACVRKARVYETP 324


>gi|271962239|ref|YP_003336435.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I)-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270505414|gb|ACZ83692.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I)-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 417

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 38/133 (28%), Gaps = 33/133 (24%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-------------------IHPDECIDCGV 45
           V ENC +C    C   CP  C Y   +                      I    C+ CG+
Sbjct: 47  VEENCTVC--MLCARECPDWCIYIDSHKETLPAPEGGRPRARNMLDRFAIDFSLCMYCGI 104

Query: 46  CEPECPVDAIKP-----DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
           C   CP DA+         E  +   +    + A     +       P A + +    K 
Sbjct: 105 CIEVCPFDALFWSPEFEYAEGDIRNLVHEKDKLAAWAQTV-----PPPPAHEPNADPPKE 159

Query: 101 EKYFSP--NPGGK 111
               S    PG  
Sbjct: 160 LAAASRPVRPGPG 172


>gi|222444678|ref|ZP_03607193.1| hypothetical protein METSMIALI_00291 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434243|gb|EEE41408.1| hypothetical protein METSMIALI_00291 [Methanobrevibacter smithii
           DSM 2375]
          Length = 768

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E CI+C   +CVE C        ++ + I P  C  CG C   C   AI
Sbjct: 572 IDEEKCIVC--GECVERCKFKSMSIQDDEIYIDPMSCTGCGKCLVGCKQFAI 621



 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV TE CI C    C EVC V+   +  +                     +  + C  CG
Sbjct: 238 YVDTEKCIAC--GKCAEVCEVEVPDDWNDGLSNRKAIYRPFGQSYPEAYVVDMEHCDRCG 295

Query: 45  VCEPECPVDAIKPDTEPG 62
            C+ +C ++AI+   +P 
Sbjct: 296 DCKRQCSMNAIRFKVKPE 313


>gi|218265299|ref|ZP_03478757.1| hypothetical protein PRABACTJOHN_04467 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221524|gb|EEC94174.1| hypothetical protein PRABACTJOHN_04467 [Parabacteroides johnsonii
           DSM 18315]
          Length = 252

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                + C  C++  C++VCPV      ++ +   P  CI C  C  ECP  A   DT  
Sbjct: 177 PVTDEDLCTQCEY--CIDVCPVSAISIVDDRMFSDPATCIKCCACVKECPEGARTFDTPY 234

Query: 62  GLE 64
              
Sbjct: 235 TAM 237


>gi|197335878|ref|YP_002156366.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio fischeri MJ11]
 gi|197317368|gb|ACH66815.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio fischeri MJ11]
          Length = 228

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y+ E    +     +C+ CG C   CP  
Sbjct: 98  SCQHCENAPCVMVCPTGAAYKDETTGIVDVHNEKCVGCGYCLVACPYQ 145


>gi|171463232|ref|YP_001797345.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192770|gb|ACB43731.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 228

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
            ++  + CI C  T C++ CPVD      +    +  D C  C +C P CPVD I   D 
Sbjct: 88  AFIDPKKCIGC--TLCIQACPVDAIVGASKQMHVVLSDWCTGCNLCIPPCPVDCISMIDV 145

Query: 60  EPGLELWLKINSEYATQWPNITTKKE 85
             G   W   + + A         +E
Sbjct: 146 TGGQTGWDAWSQDLADFARKRYHNRE 171


>gi|148642142|ref|YP_001272655.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551159|gb|ABQ86287.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
          Length = 768

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E CI+C   +CVE C        ++ + I P  C  CG C   C   AI
Sbjct: 572 IDEEKCIVC--GECVERCKFKSMSIQDDEIYIDPMSCTGCGKCLVGCKQFAI 621



 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV TE CI C    C EVC V+   +  +                     +  + C  CG
Sbjct: 238 YVDTEKCIAC--GKCAEVCEVEVPDDWNDGLSNRKAIYRPFGQSYPEAYVVDMEHCDRCG 295

Query: 45  VCEPECPVDAIKPDTEPG 62
            C+ +C ++AI+   +P 
Sbjct: 296 DCKRQCSMNAIRFKVKPE 313


>gi|197101747|ref|NP_001125353.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Pongo abelii]
 gi|269969395|sp|P0CB97|NDUS8_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|55727800|emb|CAH90653.1| hypothetical protein [Pongo abelii]
          Length = 210

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 166 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWEAE 198


>gi|148259363|ref|YP_001233490.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|146401044|gb|ABQ29571.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
          Length = 180

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +E C  C +  CV+ CP     ++ G N + +    C  C  C   CP D+      
Sbjct: 55  SERCNHCSNATCVDACPTGASQYWNGSNIVVVDATRCTGCKACIAACPYDSRLIMEP 111


>gi|321460435|gb|EFX71477.1| hypothetical protein DAPPUDRAFT_93364 [Daphnia pulex]
          Length = 183

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 81  EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 138

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 139 VEGP----------NFEFSTETHEELMYNKEKLLNNGDKWEAE 171


>gi|222034581|emb|CAP77323.1| electron transport protein ygfS [Escherichia coli LF82]
 gi|312947418|gb|ADR28245.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|150396121|ref|YP_001326588.1| NADH dehydrogenase subunit I [Sinorhizobium medicae WSM419]
 gi|150027636|gb|ABR59753.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium medicae WSM419]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFSTETREEL------YYDKEKLLANGDRWERE 151


>gi|332029694|gb|EGI69573.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Acromyrmex echinatior]
          Length = 197

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 95  EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMSKCIYCGFCQEACPVDAI 152

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 153 VEGP----------NFEFSTETHEEMLYNKEKLLNNGDKWESE 185


>gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5]
 gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5]
          Length = 597

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CP D      +    I+P++C+ CG C  +C   AI  +
Sbjct: 544 IDADKCKGC--TLCARTCPSDAIIGSVKEPHMINPEKCVKCGACMEKCRFGAIYKE 597


>gi|254774181|ref|ZP_05215697.1| nitrate reductase, beta subunit [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 538

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|254550167|ref|ZP_05140614.1| respiratory nitrate reductase subunit beta narH [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
          Length = 542

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 185 CEHCLNPSCVASCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 235


>gi|218550855|ref|YP_002384646.1| hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           fergusonii ATCC 35469]
 gi|218358396|emb|CAQ91043.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           fergusonii ATCC 35469]
          Length = 197

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C+   C  VCPV         + +    CI C  C   CP  A++   +      +
Sbjct: 97  ACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQESQVQAI 156

Query: 68  K 68
           K
Sbjct: 157 K 157


>gi|254488246|ref|ZP_05101451.1| NADH-quinone oxidoreductase chain i [Roseobacter sp. GAI101]
 gi|214045115|gb|EEB85753.1| NADH-quinone oxidoreductase chain i [Roseobacter sp. GAI101]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFSTETREEL------YYDKAKLLENGDRWEAE 152


>gi|118466032|ref|YP_880549.1| nitrate reductase, beta subunit [Mycobacterium avium 104]
 gi|118167319|gb|ABK68216.1| nitrate reductase, beta subunit [Mycobacterium avium 104]
          Length = 538

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|85703194|ref|ZP_01034298.1| NADH dehydrogenase subunit I [Roseovarius sp. 217]
 gi|85672122|gb|EAQ26979.1| NADH dehydrogenase subunit I [Roseovarius sp. 217]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKAKLLANGDRWEAE 152


>gi|329961451|ref|ZP_08299556.1| ferredoxin [Bacteroides fluxus YIT 12057]
 gi|328531799|gb|EGF58625.1| ferredoxin [Bacteroides fluxus YIT 12057]
          Length = 315

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I     P  + 
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTIIALNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KAE 278



 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP + I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACAKACPKNII 188


>gi|315187269|gb|EFU21025.1| ferredoxin [Spirochaeta thermophila DSM 6578]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+T++C+ C    C+  CPV+   EG     I PD+C DCG C   CP +AI P
Sbjct: 1  MAYVITDDCVAC--GTCLPECPVEAISEGNP-YVIDPDKCTDCGSCAEVCPAEAIHP 54


>gi|227832792|ref|YP_002834499.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182719|ref|ZP_06042140.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453808|gb|ACP32561.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 347

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 117 SDVCKHCTNAGCLDVCPTGALFRSEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDD 172


>gi|220929030|ref|YP_002505939.1| electron transfer flavoprotein subunit alpha [Clostridium
          cellulolyticum H10]
 gi|219999358|gb|ACL75959.1| Electron transfer flavoprotein alpha subunit [Clostridium
          cellulolyticum H10]
          Length = 399

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          ++++ C+ C    C+ VCP +     +N + I  + C  CG+C P+C   AI  +     
Sbjct: 6  ILSDKCVKCL--QCINVCPCNAIKNDKNVVYID-NTCTLCGICIPKCSFSAISYNENFTK 62

Query: 64 ELW 66
            +
Sbjct: 63 SKF 65


>gi|41408717|ref|NP_961553.1| NarH [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397075|gb|AAS04936.1| NarH [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 538

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|254773900|ref|ZP_05215416.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 546

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYA 74
          C+   P +  +     L I P  C+DCG C   CPV AI PD   +     +++IN+ + 
Sbjct: 3  CIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDNRLDDKQLPFVEINASFY 62

Query: 75 TQWPNITTKKESL 87
           + P    +K   
Sbjct: 63 PKRP--AGQKLPP 73


>gi|257069022|ref|YP_003155277.1| respiratory nitrate reductase beta subunit [Brachybacterium faecium
           DSM 4810]
 gi|256559840|gb|ACU85687.1| respiratory nitrate reductase beta subunit [Brachybacterium faecium
           DSM 4810]
          Length = 544

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+ E    + +  D C    +C   CP   I  
Sbjct: 183 CEHCLNPTCVASCPSGAIYKREEDGIVLVDQDTCRGWRMCITGCPYKKIYF 233


>gi|220904100|ref|YP_002479412.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868399|gb|ACL48734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 290

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +++C  C    C+  CP       E   +    D C  C  C   CP   I  + + G  
Sbjct: 109 SDSCKHCDDAPCMRACPTGALVRTEVGGVYPQADICNGCASCVAACPFGVIARNEKSGHS 168

Query: 65  L 65
            
Sbjct: 169 H 169


>gi|206896550|ref|YP_002247823.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
           enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
           3) [Coprothermobacter proteolyticus DSM 5265]
 gi|206739167|gb|ACI18245.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
           enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
           3) [Coprothermobacter proteolyticus DSM 5265]
          Length = 306

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C    C EVCP D     +  + I   +C  CGVC   CP  A
Sbjct: 57  RCMRC--GTCQEVCPQDALELTQGGVVIDRTQCTRCGVCAHYCPTTA 101


>gi|288819160|ref|YP_003433508.1| fumarate reductase subunit E [Hydrogenobacter thermophilus TK-6]
 gi|197724767|dbj|BAG70313.1| fumarate reductase, E subunit [Hydrogenobacter thermophilus]
 gi|288788560|dbj|BAI70307.1| fumarate reductase subunit E [Hydrogenobacter thermophilus TK-6]
 gi|308752744|gb|ADO46227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 183

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            + +  NC  C+   CV  CP     + ++ +  +    CI C  C   CP  AI  
Sbjct: 52  AFFLPMNCFHCEPAPCVFACPTSAMRKRDDGIVYLQEMLCIGCKACIIACPYGAITF 108


>gi|167392731|ref|XP_001740273.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165895662|gb|EDR23298.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 504

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C   CP  C   GE+    I+ ++CI CG C   CP  AI   + P
Sbjct: 113 YFVTQSCEGCTSRPCSVNCPKKCISFGEDGRALINQNDCIKCGRCFKFCPYGAIIHKSIP 172



 Score = 41.5 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 15/62 (24%)

Query: 9   CILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           CI C                  CV+ CP     +    +  I  ++CI+CG C   CP  
Sbjct: 151 CIKCGRCFKFCPYGAIIHKSIPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCMRACPFG 210

Query: 54  AI 55
            I
Sbjct: 211 TI 212


>gi|160886328|ref|ZP_02067331.1| hypothetical protein BACOVA_04337 [Bacteroides ovatus ATCC 8483]
 gi|299146812|ref|ZP_07039880.1| putative ferredoxin [Bacteroides sp. 3_1_23]
 gi|156108213|gb|EDO09958.1| hypothetical protein BACOVA_04337 [Bacteroides ovatus ATCC 8483]
 gi|298517303|gb|EFI41184.1| putative ferredoxin [Bacteroides sp. 3_1_23]
          Length = 343

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + C  C    CV  CP     +G+        +CI C  C   C   A   +T 
Sbjct: 272 DEDLCTHC--GLCVVRCPAGAITKGDELHT-DEAKCIKCCACVKACVRKARVYETP 324


>gi|150399563|ref|YP_001323330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150012266|gb|ABR54718.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 166

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCSEVCPVSAIESKDGVIYLDKETCIGCGLCAMACPFGAIY 91


>gi|118463699|ref|YP_880273.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium avium 104]
 gi|118164986|gb|ABK65883.1| probable ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          avium 104]
          Length = 546

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYA 74
          C+   P +  +     L I P  C+DCG C   CPV AI PD   +     +++IN+ + 
Sbjct: 3  CIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDNRLDDKQLPFVEINASFY 62

Query: 75 TQWPNITTKKESL 87
           + P    +K   
Sbjct: 63 PKRP--AGQKLPP 73


>gi|303249089|ref|ZP_07335331.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
 gi|1914864|emb|CAA72423.1| cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans JJ]
 gi|302489504|gb|EFL49448.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
          Length = 421

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
          V    CI C    C+  CP        GE    + P  CI+CG C   CPV AI 
Sbjct: 30 VDETKCIGCD--TCMGYCPTGAITGESGEPHKVVDPAACINCGQCLTHCPVAAIY 82


>gi|2147664|pir||S61307 nitrate reductase (EC 1.7.99.4) beta chain - Thiosphaera
           pantotropha
 gi|541762|emb|CAA81215.1| narH [Paracoccus denitrificans]
          Length = 505

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ E      I  D+C    +C   CP   I  +
Sbjct: 176 MMYL-PRLCEHCLNPACVASCPSGAIYKREEDGEELIDQDKCRGWRMCVSGCPYKKIYYN 234

Query: 59  T 59
            
Sbjct: 235 W 235


>gi|127511541|ref|YP_001092738.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636836|gb|ABO22479.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 190

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C++  CV VCP    Y G++ L  I  D+C+ C  C   CP      + E
Sbjct: 59  SCQQCENAPCVTVCPTGAAYVGDDGLVSIKEDKCVGCMYCVAACPYKVRFINPE 112


>gi|332998146|gb|EGK17750.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           VA-6]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C+H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCEHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|323702453|ref|ZP_08114117.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfotomaculum nigrificans DSM 574]
 gi|323532592|gb|EGB22467.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfotomaculum nigrificans DSM 574]
          Length = 448

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
          M   V+  C+ C    C+  CP +  +  +N +  +  D+C++CG C   CPV+A+
Sbjct: 1  MAVNVSPACMGC--QACITTCPYEALFINDNGVCEVIKDKCVECGKCVEVCPVEAL 54


>gi|240171702|ref|ZP_04750361.1| NarH [Mycobacterium kansasii ATCC 12478]
          Length = 529

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|238921030|ref|YP_002934545.1| cytochrome c nitrite reductase, Fe-S protein, [Edwardsiella
           ictaluri 93-146]
 gi|238870599|gb|ACR70310.1| cytochrome c nitrite reductase, Fe-S protein, putative
           [Edwardsiella ictaluri 93-146]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV  CP    +       + + PD C+ C  C   CP  
Sbjct: 91  SCQHCDDAPCVNACPTGASFRDAASGIVDVDPDLCVGCQYCIAACPYR 138


>gi|163849670|ref|YP_001637713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|163661275|gb|ABY28642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
          Length = 936

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL--E 64
            C+ C+H  C  VCPV    ++GE       + C+    CE  CP    + +       +
Sbjct: 759 PCMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCPYKVRRFNFFGYADGQ 818

Query: 65  LWLKINSE--YATQWPNITTK 83
            +  + +E   A + PN+T +
Sbjct: 819 PYANLGAESVKAQRNPNVTVR 839


>gi|222053966|ref|YP_002536328.1| molybdopterin oxidoreductase Fe4S4 region [Geobacter sp. FRC-32]
 gi|221563255|gb|ACM19227.1| molybdopterin oxidoreductase Fe4S4 region [Geobacter sp. FRC-32]
          Length = 973

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C  VCPV      E  L A   + CI    C   CP    + +       W+
Sbjct: 810 CQHCDAAPCEPVCPVFAAMHNEEGLNAQIYNRCIGTRYCSNNCPYKVRRFN-------WV 862

Query: 68  KIN 70
            IN
Sbjct: 863 NIN 865


>gi|84516725|ref|ZP_01004083.1| NADH dehydrogenase subunit I [Loktanella vestfoldensis SKA53]
 gi|84509193|gb|EAQ05652.1| NADH dehydrogenase subunit I [Loktanella vestfoldensis SKA53]
          Length = 166

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 64  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 121

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 122 V--EGPNFEFSTETREEL------YYDKAKLLENGDRWESE 154


>gi|332343389|gb|AEE56723.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|293372702|ref|ZP_06619084.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292632511|gb|EFF51107.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 278

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + C  C    CV  CP     +G+        +CI C  C   C   A   DT 
Sbjct: 207 DEDLCTHC--GLCVVRCPAGAITKGDELHT-DEAKCIKCCACVKACVRKARVYDTP 259


>gi|260173332|ref|ZP_05759744.1| putative hydrogenase [Bacteroides sp. D2]
 gi|315921605|ref|ZP_07917845.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695480|gb|EFS32315.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|119433768|gb|ABL74928.1| Orf37 [Streptoalloteichus hindustanus]
          Length = 523

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 186 CEHCLNPSCVASCPSGAMYKRVEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 236


>gi|114707377|ref|ZP_01440274.1| NADH dehydrogenase subunit I [Fulvimarina pelagi HTCC2506]
 gi|114537258|gb|EAU40385.1| NADH dehydrogenase subunit I [Fulvimarina pelagi HTCC2506]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 21/101 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                       I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRQNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 119 V--EGPNFEFATETREEL------YYDKEKLLANGDRWERE 151


>gi|37679887|ref|NP_934496.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|37198632|dbj|BAC94467.1| ferredoxin [Vibrio vulnificus YJ016]
          Length = 557

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 176 DTDLCAHSSRGVKGCE--RCVDACPAGALTSQGSDKTGHHIEINPYLCQGVGTCATSCPT 233

Query: 53  DAIKPDTEPGLE--LWLK 68
           +AI        E   +++
Sbjct: 234 EAIHYALPNPQETQKFIE 251



 Score = 35.7 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           T  C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 421 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACPEQ 468


>gi|34558142|ref|NP_907957.1| hydrogenase-3 small subunit [Wolinella succinogenes DSM 1740]
 gi|34483860|emb|CAE10857.1| HYDROGENASE-3 SMALL SUBUNIT [Wolinella succinogenes]
          Length = 216

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELW 66
           C  C    C  VCP          + +  + CI C +C   CP  A  I+ +  P +   
Sbjct: 54  CRQCDDAPCANVCPTGALRISNQTVELCEEICIGCKLCTIACPYGAVVIEAEVPPSIVGE 113

Query: 67  LKINSE 72
            + N E
Sbjct: 114 FERNLE 119


>gi|304319939|ref|YP_003853582.1| NADH dehydrogenase I, I subunit [Parvularcula bermudensis HTCC2503]
 gi|303298842|gb|ADM08441.1| NADH dehydrogenase I, I subunit [Parvularcula bermudensis HTCC2503]
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMVKCIYCGLCQESCPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P L++  +   E       +  K   L +  + + +  K
Sbjct: 118 V--EGPTLQIATETREEL------LYDKDRLLANGDRWERLIAK 153


>gi|320195433|gb|EFW70058.1| NrfC-like protein [Escherichia coli WV_060327]
 gi|323187095|gb|EFZ72411.1| hypothetical protein ECRN5871_4682 [Escherichia coli RN587/1]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|300728139|ref|ZP_07061510.1| nitroreductase family protein [Prevotella bryantii B14]
 gi|299774565|gb|EFI71186.1| nitroreductase family protein [Prevotella bryantii B14]
          Length = 269

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTE 60
          + T+ CI+C    C +VCP   F + E         P+ CIDCG C   CP  +I+    
Sbjct: 6  INTDTCIMC--GKCTQVCPPHIFMQREKKTPIRVFKPERCIDCGHCVDVCPTHSIEHSNI 63

Query: 61 PGLE 64
          P  +
Sbjct: 64 PYEK 67


>gi|238799475|ref|ZP_04642883.1| Electron transport protein hydN [Yersinia mollaretii ATCC 43969]
 gi|238716677|gb|EEQ08585.1| Electron transport protein hydN [Yersinia mollaretii ATCC 43969]
          Length = 158

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 35 CRHCEDAPCANVCPNGAIIRAADSIQVLQEKCIGCKTCVVACPYGAMNVVTKQVEVMF 92


>gi|227356178|ref|ZP_03840567.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
 gi|227163642|gb|EEI48558.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
          Length = 192

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  EN +  +  + CI C  C   CP  
Sbjct: 63  SCQHCEDAPCVSVCPTGASFIDENGIVQVKKELCIGCDYCVGACPYH 109


>gi|242278519|ref|YP_002990648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242121413|gb|ACS79109.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 260

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C H  CV VCPV    + E    +      CI C  C   CP  A        +  
Sbjct: 73  PCMQCGHPACVPVCPVVATTKDEEGGIVSQIYPRCIGCRYCMAACPYHARYFGWLDPVWP 132


>gi|160886568|ref|ZP_02067571.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483]
 gi|156108453|gb|EDO10198.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|154253657|ref|YP_001414481.1| NADH dehydrogenase subunit I [Parvibaculum lavamentivorans DS-1]
 gi|171769682|sp|A7HY41|NUOI_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|154157607|gb|ABS64824.1| NADH-quinone oxidoreductase, chain I [Parvibaculum lavamentivorans
           DS-1]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPALAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGLCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E       +  K   L +  + +    K
Sbjct: 118 IV--EGPNFEFATETREEL------MYDKNRLLANGDRWEREIAK 154


>gi|51245676|ref|YP_065560.1| pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila
           LSv54]
 gi|50876713|emb|CAG36553.1| related to pyruvate formate-lyase activating enzyme [Desulfotalea
           psychrophila LSv54]
          Length = 310

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHP-DECIDCGVCEPECPVDAI 55
           + CI C   DCV VCPV       G     I+   ECI CG CE  C   A+
Sbjct: 55  DRCIDC--GDCVPVCPVGIHRLLPGSKKHEINQKIECIGCGKCEAACKQGAL 104


>gi|191169559|ref|ZP_03031284.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
 gi|190900395|gb|EDV60219.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|312879841|ref|ZP_07739641.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783132|gb|EFQ23530.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
          Length = 434

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 1  MTYVV---TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M++ V      C  C +  C++ CP +        + I P+ CIDCG C   C   A+  
Sbjct: 1  MSHSVKVFEAACKGCVN--CLKSCPTEAIRVVNGSIRILPELCIDCGECLRTCGKKALGL 58

Query: 58 DTEP 61
          + + 
Sbjct: 59 EEDD 62


>gi|302344259|ref|YP_003808788.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301640872|gb|ADK86194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 175

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C  C    C+ VCP     +   +  + I    CI C  C   CP  A + 
Sbjct: 58  PCFHCTEASCLAVCPTGAVIKRPSDGIVYIDQARCIGCKSCIAACPWGACQW 109


>gi|295108848|emb|CBL22801.1| Uncharacterized Fe-S center protein [Ruminococcus obeum A2-162]
          Length = 374

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E C  C+   C + C  D          I  D+C  CG C   C  DA+        
Sbjct: 192 INEEVCRGCR--RCAKECGSDAITYVNKKAVIDYDKCKGCGRCIGACSFDAVYNPNSSAN 249

Query: 64  ELWLKINSEYAT 75
           EL  +  +EYA 
Sbjct: 250 ELLDRKMAEYAQ 261


>gi|291284206|ref|YP_003501024.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. CB9615]
 gi|293416139|ref|ZP_06658779.1| electron transporter ygfS [Escherichia coli B185]
 gi|290764079|gb|ADD58040.1| Putative electron transport protein ygfS [Escherichia coli O55:H7
           str. CB9615]
 gi|291432328|gb|EFF05310.1| electron transporter ygfS [Escherichia coli B185]
 gi|320662090|gb|EFX29491.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|284049169|ref|YP_003399508.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM
          20731]
 gi|283953390|gb|ADB48193.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM
          20731]
          Length = 433

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPG 62
          V T +C  C    CV+ C V           I  D CIDCG C   CP  A++       
Sbjct: 11 VNTRHCTGCL--ICVKDCLVQAIRVRNGKAVILSDRCIDCGECIRCCPTRAMEGWADPLT 68

Query: 63 LELWLKINSEYATQ 76
               K+N   AT 
Sbjct: 69 ELKKYKVNIALATP 82


>gi|240136885|ref|YP_002961352.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium
           extorquens AM1]
 gi|240006849|gb|ACS38075.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium
           extorquens AM1]
          Length = 941

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL--E 64
            C+ C+H  C  VCPV    ++GE       + C+    CE  CP    + +       +
Sbjct: 764 PCMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCPYKVRRFNFFGYADGQ 823

Query: 65  LWLKINSE--YATQWPNITTK 83
            +  + +E   A + PN+T +
Sbjct: 824 PYANLGAESVKAQRNPNVTVR 844


>gi|237723391|ref|ZP_04553872.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447913|gb|EEO53704.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|229821285|ref|YP_002882811.1| nitrate reductase, beta subunit [Beutenbergia cavernae DSM 12333]
 gi|229567198|gb|ACQ81049.1| nitrate reductase, beta subunit [Beutenbergia cavernae DSM 12333]
          Length = 558

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDQCRGWRMCVTGCPYKKVYF 232


>gi|288549934|ref|ZP_05968681.2| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316]
 gi|288317249|gb|EFC56187.1| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316]
          Length = 290

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 5  VTENC-----ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C            C +VCP   F   +  + I P  CI+CG C   CP DAI    
Sbjct: 11 VTQACVRRRFRHASCHACADVCPAQAFSVTDGQVTIDPSRCIECGDCLFVCPTDAISGVV 70

Query: 60 E 60
           
Sbjct: 71 P 71



 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            TE CILC    C   CP       +N L +    C  CG CE  CP  AIK     
Sbjct: 188 DTEKCILC--GACWRSCPEKAIRFEDNALVMENARCTGCGGCEAVCPSHAIKVMPAE 242


>gi|159043871|ref|YP_001532665.1| NADH dehydrogenase subunit I [Dinoroseobacter shibae DFL 12]
 gi|226737390|sp|A8LIV0|NUOI_DINSH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157911631|gb|ABV93064.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKEKLLDNGERWEAE 152


>gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 582

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           E CI C    C   CPV+        +  I+ + CI CG C   C   A+  D
Sbjct: 532 EKCIGC--GLCRRNCPVEAISGETKKVHSINQELCIQCGKCYEVCKFGAVIVD 582


>gi|91203919|emb|CAJ71572.1| similar to proton-translocating NADH dehydrogenase I, 51 kDa
           subunit (NuoF) [Candidatus Kuenenia stuttgartiensis]
          Length = 616

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + C  C    C+  CPV      +     I   +CI C VC  +C   AI
Sbjct: 565 VIPDKCTKC--QVCIRNCPVKAISGSKTEVAFIDKAKCIKCNVCYEKCNFLAI 615


>gi|332704784|ref|ZP_08424872.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554933|gb|EGJ51977.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 263

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C++  CV VCPV    + E    +      CI C  C   CP      +       
Sbjct: 74  PCMQCENPSCVPVCPVVATTKDEEGGIVSQIYPRCIGCRYCMAACPYHVRYFNWFDPQWP 133


>gi|294495379|ref|YP_003541872.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
 gi|292666378|gb|ADE36227.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
          Length = 286

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + + C  C    C   CPVD      + L    ++C  CG C   CP  A   + + G  
Sbjct: 165 IDDKCTRC--GLCETTCPVDAIKIENDTLYFDEEKCNLCGDCVFVCPTSA-WIEVKSGYT 221

Query: 65  LWL 67
           +W+
Sbjct: 222 IWV 224



 Score = 36.9 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH 36
           Y   E C LC   DCV VCP   + E ++   I 
Sbjct: 192 YFDEEKCNLC--GDCVFVCPTSAWIEVKSGYTIW 223


>gi|293373213|ref|ZP_06619575.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631861|gb|EFF50477.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|291548248|emb|CBL21356.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus sp. SR1/5]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C   CP +   +G+    I  D C+DCG C   CPV AI  +
Sbjct: 1  MAYVISDECVSC--GTCEGECPNEAISQGDEHYVIDADACVDCGTCAEACPVGAISAE 56


>gi|255690239|ref|ZP_05413914.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii
           DSM 17565]
 gi|260624258|gb|EEX47129.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii
           DSM 17565]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCLN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|255101316|ref|ZP_05330293.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-63q42]
 gi|255307192|ref|ZP_05351363.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           ATCC 43255]
          Length = 140

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C+ VCP +CF + E F+ +    CI C +CE  C   A+    +     
Sbjct: 54  ACIHCNEPKCLGVCPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGALIYGNDGKANK 111


>gi|315231247|ref|YP_004071683.1| Fe-hydrogenase subunit beta [Thermococcus barophilus MP]
 gi|315184275|gb|ADT84460.1| Fe-hydrogenase subunit beta [Thermococcus barophilus MP]
          Length = 190

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ + C  C  T C   CP +        +  I P++C+ CG+C   C   AI+   E
Sbjct: 135 IIPDKCKGC--TLCARNCPQNAITGAPGKVHKIDPNKCVGCGICASVCRFGAIEEYEE 190



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 7  ENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CI CK   CV VCP  V  F      +      C+ C  C   CPV+A++   E
Sbjct: 44 DKCIGCKL--CVTVCPAGVIEFVPEIKKVTFWLGRCVFCAQCVDVCPVNALEMSKE 97


>gi|51244330|ref|YP_064214.1| Fe-S-cluster-containing oxidoreductase [Desulfotalea psychrophila
           LSv54]
 gi|50875367|emb|CAG35207.1| related to Fe-S-cluster-containing oxidoreductase [Desulfotalea
           psychrophila LSv54]
          Length = 200

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V   C  C+ + C   CPV    + E+ + +  + C+ C  C   CP  AI+       +
Sbjct: 56  VPVQCRQCEDSPCANACPVGAIVQRESHIDVIAELCVGCKSCLLACPFGAIQIVETTRNQ 115


>gi|331654382|ref|ZP_08355382.1| putative electron transport protein YgfS [Escherichia coli M718]
 gi|331047764|gb|EGI19841.1| putative electron transport protein YgfS [Escherichia coli M718]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|312137910|ref|YP_004005246.1| nitrate reductase beta subunit narh [Rhodococcus equi 103S]
 gi|311887249|emb|CBH46558.1| putative nitrate reductase beta subunit NarH [Rhodococcus equi
           103S]
          Length = 560

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 186 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDQCRGWRMCVTGCPYKKVYF 236


>gi|298480728|ref|ZP_06998924.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22]
 gi|298273162|gb|EFI14727.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLEL 65
             E 
Sbjct: 174 CEEA 177



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHGIEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|325673315|ref|ZP_08153007.1| respiratory nitrate reductase, beta subunit [Rhodococcus equi ATCC
           33707]
 gi|325555905|gb|EGD25575.1| respiratory nitrate reductase, beta subunit [Rhodococcus equi ATCC
           33707]
          Length = 560

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 186 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDQCRGWRMCVTGCPYKKVYF 236


>gi|255014270|ref|ZP_05286396.1| ferredoxin [Bacteroides sp. 2_1_7]
 gi|256841512|ref|ZP_05547019.1| ferredoxin [Parabacteroides sp. D13]
 gi|262383318|ref|ZP_06076454.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|298376261|ref|ZP_06986217.1| hypothetical protein HMPREF0104_02443 [Bacteroides sp. 3_1_19]
 gi|301309369|ref|ZP_07215311.1| conserved domain protein [Bacteroides sp. 20_3]
 gi|256737355|gb|EEU50682.1| ferredoxin [Parabacteroides sp. D13]
 gi|262294216|gb|EEY82148.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|298267298|gb|EFI08955.1| hypothetical protein HMPREF0104_02443 [Bacteroides sp. 3_1_19]
 gi|300832458|gb|EFK63086.1| conserved domain protein [Bacteroides sp. 20_3]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+   +I+P+ C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVGAISEGD-KYSINPEMCTDCGTCADACPTEAIHP 54


>gi|226327967|ref|ZP_03803485.1| hypothetical protein PROPEN_01849 [Proteus penneri ATCC 35198]
 gi|225203671|gb|EEG86025.1| hypothetical protein PROPEN_01849 [Proteus penneri ATCC 35198]
          Length = 192

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  EN +  +  + CI C  C   CP  
Sbjct: 63  SCQHCEDAPCVSVCPTGASFIDENGIVQVKKELCIGCDYCVGACPYH 109


>gi|206901296|ref|YP_002251606.1| hypothetical protein DICTH_1795 [Dictyoglomus thermophilum H-6-12]
 gi|206740399|gb|ACI19457.1| conserved protein [Dictyoglomus thermophilum H-6-12]
          Length = 378

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V+ +  CI C+   C   CP          + I   +CI C  C   CP  AI+ +    
Sbjct: 315 VIEDKKCIKCR--ICENSCPNKAITYTPEGMIIDYKKCISCFCCHELCPQKAIRLEKSLL 372

Query: 63  LEL 65
              
Sbjct: 373 ARK 375


>gi|197104152|ref|YP_002129529.1| respiratory nitrate reductase, beta subunit [Phenylobacterium
           zucineum HLK1]
 gi|196477572|gb|ACG77100.1| respiratory nitrate reductase, beta subunit [Phenylobacterium
           zucineum HLK1]
          Length = 508

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C+  CP    Y+   +  + I  + C    +C   CP   +  + 
Sbjct: 183 CEHCLNPSCLAACPSGAIYKRAEDGIVLIDQERCRGWRMCVSGCPYKKVYYNW 235


>gi|184200425|ref|YP_001854632.1| putative formate dehydrogenase iron-sulfur subunit [Kocuria
           rhizophila DC2201]
 gi|183580655|dbj|BAG29126.1| putative formate dehydrogenase iron-sulfur protein [Kocuria
           rhizophila DC2201]
          Length = 404

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   +  +E
Sbjct: 201 SDVCKHCTHAGCLDVCPTGALFRTEYGTVVVQEDICNGCGTCVAGCPFGVIERRNDGLVE 260

Query: 65  L 65
            
Sbjct: 261 P 261


>gi|150008480|ref|YP_001303223.1| putative pyruvate formate-lyase 3 activating enzyme
           [Parabacteroides distasonis ATCC 8503]
 gi|149936904|gb|ABR43601.1| putative pyruvate formate-lyase 3 activating enzyme
           [Parabacteroides distasonis ATCC 8503]
          Length = 309

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK   E
Sbjct: 59  IKNKCIGC--GRCEAICPRGNISIQDHFPVFNRQACVACKACERICPQNAIKFVGE 112


>gi|145592049|ref|YP_001154051.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145283817|gb|ABP51399.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum arsenaticum DSM 13514]
          Length = 604

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E CI C    C  +  C        +    I P  C+ CG+C   CPVDAIK D   
Sbjct: 538 VEPEKCIGC--GICYNLLKCSAIQARP-DRKAYIDPALCVGCGMCAEVCPVDAIKGD--G 592

Query: 62  GLELWLKI 69
               WL++
Sbjct: 593 ARVKWLEV 600



 Score = 37.3 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
            Y+    C+ C    C EVCPVD        +
Sbjct: 566 AYIDPALCVGC--GMCAEVCPVDAIKGDGARV 595


>gi|331663148|ref|ZP_08364058.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA143]
 gi|331058947|gb|EGI30924.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA143]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|312966566|ref|ZP_07780786.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
          2362-75]
 gi|312288676|gb|EFR16576.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
          2362-75]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|304315176|ref|YP_003850323.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
 gi|302588635|gb|ADL59010.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
          Length = 128

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C  C    C+  C V  F        I P+ C+ C +C   CP   I  + 
Sbjct: 40 CRQCSDAPCLRACRVGAFKIINKIPVIDPERCVGCRLCLEACPEGCIIFED 90


>gi|288957563|ref|YP_003447904.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288909871|dbj|BAI71360.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 688

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             C  T C++VCP        + +AI P  C  CG C   CP  A      P
Sbjct: 289 TGC--TRCLDVCPTGAVTPNGDHVAIDPHVCAGCGSCAAVCPTGAATYALPP 338



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C LC    CV  CP         +  L+   D C+ CG+C   CP   I    E
Sbjct: 521 VDVEGCTLCL--ACVGACPTGALLDNADKPMLSFAQDACVQCGLCRTTCPEKVISLVPE 577


>gi|311746073|ref|ZP_07719858.1| putative iron-sulfur binding oxidoreductase [Algoriphagus sp. PR1]
 gi|126576291|gb|EAZ80569.1| putative iron-sulfur binding oxidoreductase [Algoriphagus sp. PR1]
          Length = 1028

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C  VCPV         L  +  + CI    C   CP    + +     +   
Sbjct: 837 CQQCNNAPCETVCPVAATTHSSEGLNQMTYNRCIGTRYCANNCPYKVRRFNWFKYHD--- 893

Query: 68  KINSEYATQWPNITTKKE 85
             N ++A    NI    +
Sbjct: 894 --NKDFAGV--NIAQNDD 907


>gi|260905039|ref|ZP_05913361.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Brevibacterium linens BL2]
          Length = 381

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 180 SDVCKHCTHAGCLDVCPTGALFRTEFDTVVVQNDVCNGCGTCVAGCPFGVIERRDD 235


>gi|26249108|ref|NP_755148.1| electron transport protein HydN [Escherichia coli CFT073]
 gi|91212072|ref|YP_542058.1| electron transport protein HydN [Escherichia coli UTI89]
 gi|26109515|gb|AAN81718.1|AE016765_120 Electron transport protein hydN [Escherichia coli CFT073]
 gi|91073646|gb|ABE08527.1| electron transport protein HydN [Escherichia coli UTI89]
 gi|323377429|gb|ADX49697.1| electron transport protein HydN [Escherichia coli KO11]
          Length = 180

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 63  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 109


>gi|193071591|ref|ZP_03052498.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|312969693|ref|ZP_07783876.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
          1827-70]
 gi|192955089|gb|EDV85585.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|310337978|gb|EFQ03067.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
          1827-70]
 gi|320197853|gb|EFW72461.1| NrfC-like protein [Escherichia coli EC4100B]
 gi|323186056|gb|EFZ71412.1| hypothetical protein ECOK1357_0518 [Escherichia coli 1357]
 gi|323948034|gb|EGB44026.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|332096031|gb|EGJ01036.1| hypothetical protein SB359474_1636 [Shigella boydii 3594-74]
 gi|332756987|gb|EGJ87330.1| hypothetical protein SF434370_1951 [Shigella flexneri 4343-70]
 gi|333003867|gb|EGK23402.1| hypothetical protein SFK218_2582 [Shigella flexneri K-218]
 gi|333005332|gb|EGK24852.1| hypothetical protein SFVA6_2053 [Shigella flexneri VA-6]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|324119155|gb|EGC13043.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|323978823|gb|EGB73904.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|323965964|gb|EGB61407.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327251228|gb|EGE62921.1| protein aegA domain protein [Escherichia coli STEC_7v]
          Length = 157

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|297519363|ref|ZP_06937749.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           OP50]
          Length = 314

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++   
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVD 106


>gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 622

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDC-FYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           TY ++ + C  C+   CV+ CP     + G+    I     C  CG+C   C +DA+
Sbjct: 565 TYRIINDRCTGCRL--CVKACPAQAITFAGKRRPVILDEAVCNRCGICREVCRLDAV 619


>gi|288937368|ref|YP_003441427.1| glycyl-radical enzyme activating protein family [Klebsiella
           variicola At-22]
 gi|288892077|gb|ADC60395.1| glycyl-radical enzyme activating protein family [Klebsiella
           variicola At-22]
          Length = 315

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
           + CI C   DCV VCP    Y     GE    +  ++ CI C  CE  C  +A  I    
Sbjct: 58  DKCINC--GDCVNVCPAGIHYRAEENGEMKHFVDRNKDCIGCRKCEEICTQNALDIMGKD 115

Query: 60  EPGLELWLKINSEY 73
               EL   I  +Y
Sbjct: 116 VTVSELMEIIMQDY 129


>gi|218130960|ref|ZP_03459764.1| hypothetical protein BACEGG_02562 [Bacteroides eggerthii DSM 20697]
 gi|317476271|ref|ZP_07935521.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986832|gb|EEC53164.1| hypothetical protein BACEGG_02562 [Bacteroides eggerthii DSM 20697]
 gi|316907545|gb|EFV29249.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 286

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP   I     P  + 
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEVCPQGTIIALNFPPRKP 275

Query: 66  WLKINSEYAT 75
             +  +  A 
Sbjct: 276 KTEGEAPKAE 285



 Score = 35.7 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP + I
Sbjct: 142 CLGC--GDCVTACQFDAIHMNPETGLPEVDESKCTACGACAKACPRNII 188


>gi|189404540|ref|ZP_02790135.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4501]
 gi|189405452|ref|ZP_02815504.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC869]
 gi|217328744|ref|ZP_03444825.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. TW14588]
 gi|189365011|gb|EDU83427.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4501]
 gi|189370046|gb|EDU88462.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC869]
 gi|217318091|gb|EEC26518.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. TW14588]
 gi|320188358|gb|EFW63020.1| NrfC-like protein [Escherichia coli O157:H7 str. EC1212]
 gi|326342037|gb|EGD65818.1| NrfC-like protein [Escherichia coli O157:H7 str. 1044]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|317054472|ref|YP_004118497.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pantoea sp. At-9b]
 gi|316952467|gb|ADU71941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pantoea sp.
          At-9b]
          Length = 201

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++ + C+ C +C   CP  AI+ 
Sbjct: 51 CRHCEDAPCASVCPVNAITRVDGAVQLNANLCVSCKLCGIACPFGAIEF 99


>gi|303245127|ref|ZP_07331443.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302484510|gb|EFL47458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 386

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV +NC+ C    CV  CPV+     +N   I   +CI C +C   CP +AI
Sbjct: 127 VVMDNCVGC--GVCVPECPVEAITIEDNKAVIDKTKCIYCSICGQTCPWNAI 176



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          C LC    CVEVCP     E +  +  +P +C+ CG C   CP    + D       
Sbjct: 34 CTLC--MQCVEVCPTGALSEIDGKIDYNPVKCMKCGKCAEACPTKIKRVDNTYPYSK 88


>gi|237713804|ref|ZP_04544285.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409289|ref|ZP_06085832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644700|ref|ZP_06722449.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294805939|ref|ZP_06764806.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446251|gb|EEO52042.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352741|gb|EEZ01838.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639963|gb|EFF58232.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446821|gb|EFG15421.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295085089|emb|CBK66612.1| Iron only hydrogenase large subunit, C-terminal domain [Bacteroides
           xylanisolvens XB1A]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLEL 65
             E 
Sbjct: 174 CEEA 177



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHGIEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|167646786|ref|YP_001684449.1| NADH dehydrogenase subunit I [Caulobacter sp. K31]
 gi|167349216|gb|ABZ71951.1| NADH-quinone oxidoreductase, chain I [Caulobacter sp. K31]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIEAEPRDDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P +E  ++   E          K++ L +  + + +  K
Sbjct: 120 V--EGPNIEFAVETREEL------YYDKEKLLDNGDRWERLIAK 155


>gi|126438164|ref|YP_001073855.1| formate dehydrogenase beta subunit [Mycobacterium sp. JLS]
 gi|126237964|gb|ABO01365.1| formate dehydrogenase beta subunit [Mycobacterium sp. JLS]
          Length = 300

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+     
Sbjct: 121 SDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIERREGD 177


>gi|108802182|ref|YP_642379.1| formate dehydrogenase beta subunit [Mycobacterium sp. MCS]
 gi|119871335|ref|YP_941287.1| formate dehydrogenase beta subunit [Mycobacterium sp. KMS]
 gi|108772601|gb|ABG11323.1| formate dehydrogenase beta subunit [Mycobacterium sp. MCS]
 gi|119697424|gb|ABL94497.1| formate dehydrogenase beta subunit [Mycobacterium sp. KMS]
          Length = 300

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+     
Sbjct: 121 SDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIERREGD 177


>gi|27365883|ref|NP_761411.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6]
 gi|27362032|gb|AAO10938.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6]
          Length = 552

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 171 DTDLCAHSSRGVKGCE--RCVDACPAGALSSQGSEKTGHRIEINPYLCQGVGTCATSCPT 228

Query: 53  DAIKPDTEPGLE--LWLK 68
           +AI        E   +++
Sbjct: 229 EAIHYALPNPQETQKFIE 246



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           T  C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 416 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACPEQ 463


>gi|85859984|ref|YP_462186.1| exported Fe-S-cluster-containing protein [Syntrophus aciditrophicus
           SB]
 gi|85723075|gb|ABC78018.1| exported Fe-S-cluster-containing protein [Syntrophus aciditrophicus
           SB]
          Length = 336

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           V   C+ C +  C  +CP    ++  N  + I  D C     C   CP +
Sbjct: 126 VPRRCMHCDNPACATICPFSANHKQRNGAVVIDQDFCFGGAKCRTVCPWE 175


>gi|70607531|ref|YP_256401.1| 4Fe-4S binding protein [Sulfolobus acidocaldarius DSM 639]
 gi|68568179|gb|AAY81108.1| conserved Archaeal 4Fe-4S binding protein [Sulfolobus
           acidocaldarius DSM 639]
          Length = 641

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             E C+ C+   C + CPV       NF+         CI  G C   CP D I      
Sbjct: 570 DPELCVKCETKACSKACPVGNTDLPGNFIKKGEFKSSRCIGVGDCAEACPYDNIMFYDVR 629

Query: 62  GLEL 65
               
Sbjct: 630 SWLK 633


>gi|317479124|ref|ZP_07938264.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316904696|gb|EFV26510.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 300

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTI 265



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +  ++C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEEKCTACGACAKACPKSII 188


>gi|309786205|ref|ZP_07680833.1| aegA domain protein [Shigella dysenteriae 1617]
 gi|308925950|gb|EFP71429.1| aegA domain protein [Shigella dysenteriae 1617]
          Length = 134

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 17 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 63


>gi|270296900|ref|ZP_06203099.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272887|gb|EFA18750.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 300

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTI 265



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +  ++C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEEKCTACGACAKACPKSII 188


>gi|258515481|ref|YP_003191703.1| aldo/keto reductase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779186|gb|ACV63080.1| aldo/keto reductase [Desulfotomaculum acetoxidans DSM 771]
          Length = 317

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + C  C   +CV+ C       G + + ++ D+C  CG C   CP   I
Sbjct: 266 IEDWCKNC--GECVQRCQAGALSIGIDRVQVNQDKCRLCGYCASVCPEFCI 314


>gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2]
 gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2]
          Length = 595

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E C  C    C + CP D   ++ +    I  ++CI C  C   CP DAI 
Sbjct: 544 VDPELCKRC--GLCHKGCPADAIIWKKKQVAVIDKEKCIKCMSCYARCPFDAIF 595


>gi|254481239|ref|ZP_05094484.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [marine gamma proteobacterium HTCC2148]
 gi|214038402|gb|EEB79064.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [marine gamma proteobacterium HTCC2148]
          Length = 203

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+  + CI C  T C++ CPVD      ++   +   EC  C +C   CPVD I   +E
Sbjct: 114 AYIREDECIGC--TKCIQACPVDAILGAAKHMHTVIVSECTGCDLCVEPCPVDCIDMISE 171


>gi|222054450|ref|YP_002536812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563739|gb|ACM19711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 251

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 17/88 (19%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C    CV  CPV                  + ++  +CI CG C P CP  A   D
Sbjct: 79  PCMQCDKPPCVAACPVKGPDGATWKETKGIGNGIVPVNYAKCIGCGNCVPACPYQARTMD 138

Query: 59  T-------EPGLELWLKINS-EYATQWP 78
                    P L+++  + + EY  +WP
Sbjct: 139 DGSFHTAGTPQLQVYETLPAFEYGKKWP 166


>gi|94264660|ref|ZP_01288442.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454891|gb|EAT05135.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 189

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV+VCP        + L  I    CI C  C   CP DA
Sbjct: 68  CQHCQNAPCVKVCPTTASRYTPDGLVAIDYKRCIVCAACILACPYDA 114


>gi|330013710|ref|ZP_08307773.1| glycyl-radical enzyme activating protein family protein [Klebsiella
           sp. MS 92-3]
 gi|328533376|gb|EGF60118.1| glycyl-radical enzyme activating protein family protein [Klebsiella
           sp. MS 92-3]
          Length = 325

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
           + CI C   DCV VCP    Y     GE    +  ++ CI C  CE  C  +A  I    
Sbjct: 68  DKCINC--GDCVSVCPAGIHYRAEENGEMKHFVDRNKDCIGCRKCEEICTQNALDIMGKD 125

Query: 60  EPGLELWLKINSEY 73
               EL   I  +Y
Sbjct: 126 VTVSELMEIIMQDY 139


>gi|323975014|gb|EGB70123.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 157

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|319940782|ref|ZP_08015121.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805664|gb|EFW02445.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sutterella wadsworthensis 3_1_45B]
          Length = 197

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           Y +   C  CK   CV+VCP    Y  ++  + ++ ++CI C +C   CP  A
Sbjct: 53  YFLPSICQCCKDAPCVKVCPTGATYRTDDGQILVNKEKCIGCKMCMAACPYGA 105


>gi|301309380|ref|ZP_07215322.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300832469|gb|EFK63097.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 309

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK   E
Sbjct: 59  IKNKCIGC--GRCEAICPRGNISIQDHFPVFNRQACVACKACERICPQNAIKFVGE 112


>gi|240102884|ref|YP_002959193.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
 gi|239910438|gb|ACS33329.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
          Length = 174

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
          V  NC  C    C+ VCP    Y  E+    IH D+CI C  C   CP 
Sbjct: 44 VPINCKHCDDAPCLRVCPTHAIYRDEDGAVRIHEDKCIGCLACLQVCPY 92


>gi|217968829|ref|YP_002354063.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217506156|gb|ACK53167.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 236

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  CPV+  ++ E+   +    + CI C  C   CP +A   
Sbjct: 75  CNHCDDPPCVRNCPVEATFKVEDGGFVLQRYERCIGCRSCMAACPYNARFM 125


>gi|118474328|ref|YP_891343.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413554|gb|ABK81974.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. fetus
           82-40]
          Length = 211

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C  C    C  VCP         ++ +H   CI C +C   CP  AI  D+
Sbjct: 49  VMPNQCRQCDDAPCALVCPSSALRNENGYVEMHEQLCIGCALCVNACPYGAIHLDS 104


>gi|59712159|ref|YP_204935.1| formate-dependent nitrite reductase, 4Fe4S subunit [Vibrio fischeri
           ES114]
 gi|59480260|gb|AAW86047.1| formate-dependent nitrite reductase, 4Fe4S subunit [Vibrio fischeri
           ES114]
          Length = 228

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y+ E    +     +C+ CG C   CP  
Sbjct: 98  SCQHCENAPCVMVCPTGAAYKDETTGIVDVHNEKCVGCGYCLAACPYQ 145


>gi|108805515|ref|YP_645452.1| formate dehydrogenase subunit beta [Rubrobacter xylanophilus DSM
           9941]
 gi|108766758|gb|ABG05640.1| formate dehydrogenase beta subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 312

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           ++ C  C    C++VCP    +  E   + +  D C  CG C P CP 
Sbjct: 134 SDVCKHCTEAPCLDVCPTGAIFRTEFGTVVVQEDVCNGCGYCIPACPF 181


>gi|332295968|ref|YP_004437891.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179071|gb|AEE14760.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 259

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           C  C    CV+ CP    ++ EN +     ++CI CG C   CP 
Sbjct: 73  CFHCGEPACVKACPSGALFQAENGIVAFDVNKCIACGYCHSACPF 117


>gi|329955029|ref|ZP_08296010.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|328526319|gb|EGF53334.1| ferredoxin [Bacteroides clarus YIT 12056]
          Length = 321

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP   I     P  + 
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEVCPQGTIIALNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KAE 278



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVVACQFDAIHMNPETGLPEVDEAKCTACGACAKACPRSII 188


>gi|320179068|gb|EFW54027.1| NrfC protein [Shigella boydii ATCC 9905]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|300853894|ref|YP_003778878.1| putative 4Fe-4S ferredoxin [Clostridium ljungdahlii DSM 13528]
 gi|300434009|gb|ADK13776.1| putative 4Fe-4S ferredoxin [Clostridium ljungdahlii DSM 13528]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C+  CPV+   E +  + I+   CI C  C   CPV A+
Sbjct: 64  CRHCEDAPCLNACPVNAIVEKDGSIIINESACIGCQTCTIVCPVGAV 110


>gi|298387444|ref|ZP_06996996.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           1_1_14]
 gi|298259651|gb|EFI02523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           1_1_14]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|261252995|ref|ZP_05945568.1| iron-sulfur cluster-binding protein [Vibrio orientalis CIP 102891]
 gi|260936386|gb|EEX92375.1| iron-sulfur cluster-binding protein [Vibrio orientalis CIP 102891]
          Length = 553

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPDTEPGL--ELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPQDTQKFIE 247



 Score = 38.0 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C LC    CV VCP    +       L     +CI CG+C   CP   +  
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGSSPSLQFIEQDCIQCGLCTKACPEQVLSM 468


>gi|271966746|ref|YP_003340942.1| nitrate reductase subunit beta [Streptosporangium roseum DSM 43021]
 gi|270509921|gb|ACZ88199.1| nitrate reductase (beta subunit) [Streptosporangium roseum DSM
           43021]
          Length = 553

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 233


>gi|237653652|ref|YP_002889966.1| electron transport complex, RnfABCDGE type subunit beta [Thauera
           sp. MZ1T]
 gi|237624899|gb|ACR01589.1| electron transport complex, RnfABCDGE type, B subunit [Thauera sp.
           MZ1T]
          Length = 179

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T+ CI C    C++ CP D      +    +  + CI CG C   CP   I  +
Sbjct: 107 VRTDACIGCS--RCIKSCPTDAILGATKQLHVVLEEACIGCGACAEVCPTGGIDLE 160


>gi|191173453|ref|ZP_03034981.1| iron-sulfur cluster-binding protein [Escherichia coli F11]
 gi|190906295|gb|EDV65906.1| iron-sulfur cluster-binding protein [Escherichia coli F11]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|164687856|ref|ZP_02211884.1| hypothetical protein CLOBAR_01500 [Clostridium bartlettii DSM
           16795]
 gi|164603131|gb|EDQ96596.1| hypothetical protein CLOBAR_01500 [Clostridium bartlettii DSM
           16795]
          Length = 333

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   C + CPV       N   I   +C+ C VC   CP   IK D     ++ + 
Sbjct: 214 CIGCKK--CEKSCPVGAITVENNLATIDYSKCVGCKVCADVCPKKVIKADLSDRRKVSID 271



 Score = 41.1 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C+ CK   C +VCP   +         ++I   +CI C  C   CP  AI+ + +   +
Sbjct: 242 KCVGCK--VCADVCPKKVIKADLSDRRKVSIDESKCIGCTACARTCPFGAIEGEKKQPHK 299

Query: 65  LWLK 68
           + L+
Sbjct: 300 VDLE 303



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +    CI C  T C   CP      E +    +  ++C  C +C  +C  DAIK      
Sbjct: 270 IDESKCIGC--TACARTCPFGAIEGEKKQPHKVDLEKCKGCHLCMKKCKKDAIKLVDSKE 327

Query: 63  LEL 65
              
Sbjct: 328 ESK 330



 Score = 33.8 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C     CV VC        +    +  D+C+ CG C   CP   I+
Sbjct: 139 GCLGLGTCVSVCAFGALSIVDGVAVVDEDKCVLCGKCIDTCPKGLIQ 185


>gi|157960336|ref|YP_001500370.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157845336|gb|ABV85835.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 236

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 106 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKETDVAD 165

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 166 NCDFCLNSKLA 176


>gi|126700934|ref|YP_001089831.1| electron transport protein [Clostridium difficile 630]
 gi|115252371|emb|CAJ70212.1| putative oxidoreductase, Fe-S subunit [Clostridium difficile]
          Length = 183

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C+  CP     +  N ++++ ++CI C  C   CP  AI    +      ++
Sbjct: 65  CRHCEDAPCLNSCPQKAIVKENNIMSVNEEKCIGCKTCLLACPFGAIDLLPQYEDGKEVE 124


>gi|254976914|ref|ZP_05273386.1| electron transport protein [Clostridium difficile QCD-66c26]
 gi|255094300|ref|ZP_05323778.1| electron transport protein [Clostridium difficile CIP 107932]
 gi|255102482|ref|ZP_05331459.1| electron transport protein [Clostridium difficile QCD-63q42]
 gi|255308387|ref|ZP_05352558.1| electron transport protein [Clostridium difficile ATCC 43255]
 gi|255316054|ref|ZP_05357637.1| electron transport protein [Clostridium difficile QCD-76w55]
 gi|255518711|ref|ZP_05386387.1| electron transport protein [Clostridium difficile QCD-97b34]
 gi|255651833|ref|ZP_05398735.1| electron transport protein [Clostridium difficile QCD-37x79]
 gi|260684859|ref|YP_003216144.1| electron transport protein [Clostridium difficile CD196]
 gi|260688517|ref|YP_003219651.1| electron transport protein [Clostridium difficile R20291]
 gi|306521620|ref|ZP_07407967.1| electron transport protein [Clostridium difficile QCD-32g58]
 gi|260211022|emb|CBA66342.1| electron transport protein [Clostridium difficile CD196]
 gi|260214534|emb|CBE07057.1| electron transport protein [Clostridium difficile R20291]
          Length = 183

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C+  CP     +  N ++++ ++CI C  C   CP  AI    +      ++
Sbjct: 65  CRHCEDAPCLNSCPQKAIVKENNIMSVNEEKCIGCKTCLLACPFGAIDLLPQYEDGKEVE 124


>gi|315186755|gb|EFU20513.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
          thermophila DSM 6578]
          Length = 706

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 1  MTY------VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          M Y      V    C+ C    C+ VCPV    +G   +  + P+ CI CG C   C   
Sbjct: 1  MVYSQPLIDVDPARCVSC--HRCIAVCPVKYANDGSGEVVEVRPELCIGCGECLKACTHG 58

Query: 54 AIKPDTE 60
          A +   +
Sbjct: 59 ARRVVDD 65


>gi|307719316|ref|YP_003874848.1| transcriptional regulator containing a ferredoxin domain
          [Spirochaeta thermophila DSM 6192]
 gi|306533041|gb|ADN02575.1| putative transcriptional regulator containing a ferredoxin domain
          [Spirochaeta thermophila DSM 6192]
          Length = 706

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 1  MTY------VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          M Y      V    C+ C    C+ VCPV    +G   +  + P+ CI CG C   C   
Sbjct: 1  MVYSQPLIDVDPARCVSC--HRCIAVCPVKYANDGSGEVVEVRPELCIGCGECLKACTHG 58

Query: 54 AIKPDTE 60
          A +   +
Sbjct: 59 ARRVVDD 65


>gi|303248865|ref|ZP_07335114.1| Fe-S cluster domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489734|gb|EFL49667.1| Fe-S cluster domain protein [Desulfovibrio fructosovorans JJ]
          Length = 582

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y +   C  C    C+  CPV           + P+ CI CG C   CP  A
Sbjct: 8  YTIETECQDCY--RCLRHCPVKAIQVENGRATVVPELCIACGQCVAACPAHA 57



 Score = 33.8 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI 35
            VV E CI C    CV  CP        +  A+
Sbjct: 36 ATVVPELCIAC--GQCVAACPAHAKQVRSDLFAV 67


>gi|256838495|ref|ZP_05544005.1| flavodoxin [Parabacteroides sp. D13]
 gi|256739414|gb|EEU52738.1| flavodoxin [Parabacteroides sp. D13]
          Length = 268

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ T  CI C+   C+++CP+  F   +  L      CI C +C   CP  +I       
Sbjct: 185 FLNTSTCINCEK--CIKICPMHIFARRDTVLPTDEKNCIQCRLCADNCPTSSIYIHESFL 242

Query: 63  LELWLKINSEYATQWPNITTKKE 85
             L + I   ++ +  N    ++
Sbjct: 243 NGLRIAIRESFSDKLQNSYNAED 265


>gi|253571979|ref|ZP_04849384.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838576|gb|EES66662.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 489

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 173

Query: 62  GLE 64
             E
Sbjct: 174 CEE 176



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 147 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMN 206

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 207 ACPFGAIF 214


>gi|298530775|ref|ZP_07018177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510149|gb|EFI34053.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 307

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C   +C + CP            +  D C+ CGVC   CPV  +K   +      
Sbjct: 239 ELCIKC--GECAQACPFQAIAMSREGPVVSQDLCMGCGVCVSRCPVQGLKLKRQKDKSPP 296

Query: 67  LKIN 70
           L++N
Sbjct: 297 LEVN 300


>gi|167552275|ref|ZP_02346028.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323057|gb|EDZ10896.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAANGIVDVNPDLCVGCQYCIAACPYR 138


>gi|160881916|ref|YP_001560884.1| Fe-S cluster domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160430582|gb|ABX44145.1| Fe-S cluster domain protein [Clostridium phytofermentans ISDg]
          Length = 427

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELW 66
          C  C +  C++ CP +          I  + CIDCG C   CP  A     D+   ++ +
Sbjct: 17 CKGCIN--CIKRCPTEAIRVRNQKAVITKEFCIDCGECIRICPHHAKNATYDSMDMIKQF 74


>gi|92114243|ref|YP_574171.1| electron transport complex, RnfABCDGE type, B subunit
           [Chromohalobacter salexigens DSM 3043]
 gi|91797333|gb|ABE59472.1| electron transport complex, RnfABCDGE type, B subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 335

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +   EC  C +C   CPVD I     
Sbjct: 77  AFIREAECIGC--TKCIQACPVDAILGAAKQMHTVIAGECTGCELCVAPCPVDCIDILPH 134

Query: 61  PGL 63
           P  
Sbjct: 135 PEW 137


>gi|331675602|ref|ZP_08376349.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA280]
 gi|331067210|gb|EGI38618.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA280]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|304313910|ref|YP_003849057.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587369|gb|ADL57744.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 620

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y++  E C  C    C++ CP D      +    I  + C+ CG C   C  DA+   
Sbjct: 553 MHYLIEAEKCDGC--MACLKTCPADAIEGSKDEVHVIDQESCLKCGSCLDTCKRDAVLRV 610

Query: 59  TEPG 62
             P 
Sbjct: 611 PGPY 614


>gi|302348178|ref|YP_003815816.1| NADH-quinone oxidoreductase subunit I [Acidilobus saccharovorans
           345-15]
 gi|302328590|gb|ADL18785.1| NADH-quinone oxidoreductase subunit I [Acidilobus saccharovorans
           345-15]
          Length = 196

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 20/100 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--------------GENFLAIHPDECIDCGVCEPECPV 52
           + CI C    C  +CP                     + +  I+ + CI CG C   CP 
Sbjct: 64  DKCISC--ASCARICPARAMKMVTMEVKDKKLNRAMKKKYPVINYNRCIFCGYCVDVCPT 121

Query: 53  DAI----KPDTEPGLELWLKINSEYATQWPNITTKKESLP 88
           +A+      D        + +N E   + P   T KE +P
Sbjct: 122 EALYHVPYHDLVYLNMQDMILNVEEFQKEPEFVTAKEGVP 161


>gi|258542714|ref|YP_003188147.1| NADH dehydrogenase subunit I [Acetobacter pasteurianus IFO 3283-01]
 gi|256633792|dbj|BAH99767.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636851|dbj|BAI02820.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639904|dbj|BAI05866.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642960|dbj|BAI08915.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646015|dbj|BAI11963.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649068|dbj|BAI15009.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652055|dbj|BAI17989.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655112|dbj|BAI21039.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-12]
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP +                    I   +CI CG+CE  CPVDAI
Sbjct: 60  EERCIACKL--CEATCPAEAITIEAEERDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  + +
Sbjct: 118 V--EGPNYEFATETREEL------MYDKDKLLANGDRWE 148


>gi|261821988|ref|YP_003260094.1| cytochrome C nitrite reductase, Fe-S protein [Pectobacterium
           wasabiae WPP163]
 gi|261606001|gb|ACX88487.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           wasabiae WPP163]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYQ 138


>gi|254558744|ref|YP_003065839.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           DM4]
 gi|254266022|emb|CAX21772.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium
           extorquens DM4]
          Length = 936

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL--E 64
            C+ C+H  C  VCPV    ++GE       + C+    CE  CP    + +       +
Sbjct: 759 PCMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCPYKVRRFNFFGYADGQ 818

Query: 65  LWLKINSE--YATQWPNITTK 83
            +  + +E   A + PN+T +
Sbjct: 819 PYANLGAESVKAQRNPNVTVR 839


>gi|238784037|ref|ZP_04628052.1| Electron transport protein hydN [Yersinia bercovieri ATCC 43970]
 gi|238715014|gb|EEQ07011.1| Electron transport protein hydN [Yersinia bercovieri ATCC 43970]
          Length = 158

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 35 CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGAMTVVTKQVEVMF 92


>gi|254037077|ref|ZP_04871154.1| formate-dependent nitrite reductase [Escherichia sp. 1_1_43]
 gi|226840183|gb|EEH72185.1| formate-dependent nitrite reductase [Escherichia sp. 1_1_43]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|289828862|ref|ZP_06546605.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 220

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|218132108|ref|ZP_03460912.1| hypothetical protein BACEGG_03736 [Bacteroides eggerthii DSM
          20697]
 gi|317477110|ref|ZP_07936351.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|319900101|ref|YP_004159829.1| ferredoxin [Bacteroides helcogenes P 36-108]
 gi|329956776|ref|ZP_08297345.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|329964134|ref|ZP_08301300.1| ferredoxin [Bacteroides fluxus YIT 12057]
 gi|217985758|gb|EEC52099.1| hypothetical protein BACEGG_03736 [Bacteroides eggerthii DSM
          20697]
 gi|316906653|gb|EFV28366.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|319415132|gb|ADV42243.1| ferredoxin [Bacteroides helcogenes P 36-108]
 gi|328523815|gb|EGF50902.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|328525654|gb|EGF52683.1| ferredoxin [Bacteroides fluxus YIT 12057]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+   +I P+ C +CG C   CP +AI P
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVGAISEGD-IYSIDPETCTECGTCADVCPSEAIHP 54


>gi|254172052|ref|ZP_04878728.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
 gi|214033948|gb|EEB74774.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
          Length = 174

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
          V  NC  C    C+ VCP    Y  E+    IH ++CI C  C   CP 
Sbjct: 44 VPINCKHCDDAPCLRVCPTHAIYRDEDGAVRIHEEKCIGCLACLQVCPY 92


>gi|212690928|ref|ZP_03299056.1| hypothetical protein BACDOR_00416 [Bacteroides dorei DSM 17855]
 gi|237712588|ref|ZP_04543069.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|237726898|ref|ZP_04557379.1| ferredoxin [Bacteroides sp. D4]
 gi|254882246|ref|ZP_05254956.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|265752267|ref|ZP_06088060.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|294776421|ref|ZP_06741899.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|319643192|ref|ZP_07997820.1| ferredoxin [Bacteroides sp. 3_1_40A]
 gi|212666160|gb|EEB26732.1| hypothetical protein BACDOR_00416 [Bacteroides dorei DSM 17855]
 gi|229435424|gb|EEO45501.1| ferredoxin [Bacteroides dorei 5_1_36/D4]
 gi|229453909|gb|EEO59630.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|254835039|gb|EET15348.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|263237059|gb|EEZ22529.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|294449747|gb|EFG18269.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|317385096|gb|EFV66047.1| ferredoxin [Bacteroides sp. 3_1_40A]
          Length = 55

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C++ CPV+   EG+   +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVEAISEGD-KYSINPDLCTECGTCADACPSEAIH 53


>gi|126729567|ref|ZP_01745380.1| NADH dehydrogenase subunit I [Sagittula stellata E-37]
 gi|126709686|gb|EBA08739.1| NADH dehydrogenase subunit I [Sagittula stellata E-37]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFSTETREELF------YDKAKLLENGDRWEAE 152


>gi|330836748|ref|YP_004411389.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta coccoides DSM 17374]
 gi|329748651|gb|AEC02007.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta coccoides DSM 17374]
          Length = 55

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPV+   EG+    I  D CIDCG C   CP  AI  +
Sbjct: 1  MAHKITDACIAC--GTCQPECPVNAISEGD-IYVIDADACIDCGACASACPTSAIIAE 55


>gi|314934461|ref|ZP_07841820.1| nitrate reductase, beta subunit [Staphylococcus caprae C87]
 gi|313652391|gb|EFS16154.1| nitrate reductase, beta subunit [Staphylococcus caprae C87]
          Length = 509

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 169 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 227

Query: 59  TEPGLEL 65
            +     
Sbjct: 228 WKTNKAE 234


>gi|310643286|ref|YP_003948044.1| nitrate reductase, beta subunit [Paenibacillus polymyxa SC2]
 gi|309248236|gb|ADO57803.1| Nitrate reductase, beta subunit [Paenibacillus polymyxa SC2]
          Length = 491

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 145 CEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFNWQTNKAE 203


>gi|296241805|ref|YP_003649292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296094389|gb|ADG90340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 169

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +  +C+ C    C++VCP       +     + P +CI C  C   CP    + D
Sbjct: 53  IPVSCLHCAKAPCIDVCPTGAMTRDKEGAVYVIPSKCIGCMACLYACPFGIPQLD 107


>gi|300088669|ref|YP_003759191.1| nitrite and sulphite reductase 4Fe-4S region [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528402|gb|ADJ26870.1| nitrite and sulphite reductase 4Fe-4S region [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 516

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    CV VC      +  + + I  + C  CG C   CP DA+
Sbjct: 393 DACTNC--GLCVPVCKRRAITQAGDNIVIDRESCRQCGQCVAVCPFDAL 439



 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +  E+C  C    CV VCP D   E     A+                 D +  D 
Sbjct: 419 IDRESCRQC--GQCVAVCPFDALTETRRGFAVLAGGRGGWDTRLGRIIADCVTEDE 472


>gi|237753343|ref|ZP_04583823.1| iron-sulfur protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229375610|gb|EEO25701.1| iron-sulfur protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 345

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            +   C+ C    C ++CP     + EN    I    C     C   CP 
Sbjct: 125 FIPRRCMHCDDPTCQKICPFGVISKDENGAVSIDDTFCFGGAKCRDVCPW 174


>gi|255314562|ref|ZP_05356145.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-76w55]
          Length = 278

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +E C+ CK    VEVCPV       +  L I  + C +CG C   C  D+I
Sbjct: 131 DSELCVGCKKCAVVEVCPVKAAKLTDKGKLEIDSNLCNNCGKCIESCNFDSI 182


>gi|242309592|ref|ZP_04808747.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
 gi|239523593|gb|EEQ63459.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
          Length = 189

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           V  +C +C+HT CV VCP    +  E+ +  I  ++C+ C  C   CP +A   + E
Sbjct: 55  VRHSCEMCEHTPCVTVCPTHASFMDEDGIVDIDANKCVGCLYCVVACPYNARYVNPE 111


>gi|189466149|ref|ZP_03014934.1| hypothetical protein BACINT_02519 [Bacteroides intestinalis DSM
           17393]
 gi|189434413|gb|EDV03398.1| hypothetical protein BACINT_02519 [Bacteroides intestinalis DSM
           17393]
          Length = 324

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEVCPQNTI 265



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCVE C  D  +         +   +C  CG C   CP + I
Sbjct: 142 CLGC--GDCVEACQFDAIHMNPETGLPEVDEAKCTACGACAKACPKNII 188


>gi|188579304|ref|YP_001922749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179342802|gb|ACB78214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 936

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL--E 64
            C+ C+H  C  VCPV    ++GE       + C+    CE  CP    + +       +
Sbjct: 759 PCMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCPYKVRRFNFFGYADGQ 818

Query: 65  LWLKINSE--YATQWPNITTK 83
            +  + +E   A + PN+T +
Sbjct: 819 PYANLGAESVKAQRNPNVTVR 839


>gi|160935395|ref|ZP_02082777.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441753|gb|EDP19453.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC
           BAA-613]
          Length = 244

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C   +C+  CP  C    +    I  + CI CG C   CP  A+    E 
Sbjct: 173 YFITRQCRGC--GNCLSKCPQTCITTAQVPFEIQKEHCIRCGNCLEVCPFGAVVRREED 229


>gi|218528219|ref|YP_002419035.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|218520522|gb|ACK81107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 936

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL--E 64
            C+ C+H  C  VCPV    ++GE       + C+    CE  CP    + +       +
Sbjct: 759 PCMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCPYKVRRFNFFGYADGQ 818

Query: 65  LWLKINSE--YATQWPNITTK 83
            +  + +E   A + PN+T +
Sbjct: 819 PYANLGAESVKAQRNPNVTVR 839


>gi|120434530|ref|YP_860225.1| iron-sulfur binding oxidoreductase [Gramella forsetii KT0803]
 gi|117576680|emb|CAL65149.1| iron-sulfur binding oxidoreductase [Gramella forsetii KT0803]
          Length = 1020

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     +   
Sbjct: 847 CQHCNHAPCETVCPVAATSHGRQGQNQMIYNRCVGTRYCANNCPYKVRRFNWFNYTK--- 903

Query: 68  KINSEY 73
             N E+
Sbjct: 904 --NDEF 907


>gi|312136492|ref|YP_004003829.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224211|gb|ADP77067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  CK+  CVE CP            +  D+CI CG C  ECP  AI        +  L 
Sbjct: 44  CHHCKNAPCVEACPTGAMKIN----YVDTDKCIGCGSCALECPFGAISIKNNVAHKCNLC 99

Query: 69  INSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
            N +Y        TK  +L    K   +K+K E+Y + 
Sbjct: 100 DNLDYPACVRACPTKALTLIDVEKF--IKRKKEEYLNK 135



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YV T+ CI C    C   CP      +       +  + +D   C   CP  A+      
Sbjct: 65  YVDTDKCIGC--GSCALECPFGAISIKNNVAHKCNLCDNLDYPACVRACPTKALTLID-- 120

Query: 62  GLELWLKINSE 72
            +E ++K   E
Sbjct: 121 -VEKFIKRKKE 130


>gi|239618433|ref|YP_002941755.1| dihydroorotate dehydrogenase family protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239507264|gb|ACR80751.1| dihydroorotate dehydrogenase family protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 361

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +    C+ C    CVEVCP       E  +    + C  CG+C+ +CP  AI
Sbjct: 308 IDHSKCVKC--GVCVEVCPYFALSMEEQVIV-DEEACFGCGLCQTKCPTKAI 356


>gi|220915962|ref|YP_002491266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953816|gb|ACL64200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 985

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
            C+ C+   C  VCPV+     E  L  +  + C+    C   CP    + + 
Sbjct: 816 ACVHCEAAPCEYVCPVNATVHSEEGLNEMVYNRCVGTRYCSNNCPYKVRRFNW 868


>gi|197121258|ref|YP_002133209.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196171107|gb|ACG72080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 985

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
            C+ C+   C  VCPV+     E  L  +  + C+    C   CP    + + 
Sbjct: 816 ACVHCEAAPCEYVCPVNATVHSEEGLNEMVYNRCVGTRYCSNNCPYKVRRFNW 868


>gi|86157223|ref|YP_464008.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773734|gb|ABC80571.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 985

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
            C+ C+   C  VCPV+     E  L  +  + C+    C   CP    + + 
Sbjct: 816 ACVHCEAAPCEYVCPVNATVHSEEGLNEMVYNRCVGTRYCSNNCPYKVRRFNW 868


>gi|83590721|ref|YP_430730.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573635|gb|ABC20187.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
          Length = 592

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  + C  C  T C   CP      E      I  + C  CG C   C   AI  +
Sbjct: 538 HIDPDKCNGC--TRCRRRCPAGAISGEAREPHTIDLELCARCGTCLDLCRQKAIYVE 592



 Score = 37.3 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           CP     E      I PD+C  C  C   CP  AI  +      + L++
Sbjct: 526 CPAKSCRE-LLTYHIDPDKCNGCTRCRRRCPAGAISGEAREPHTIDLEL 573


>gi|325660837|ref|ZP_08149465.1| hypothetical protein HMPREF0490_00197 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085429|ref|ZP_08334514.1| hypothetical protein HMPREF0987_00817 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472911|gb|EGC76121.1| hypothetical protein HMPREF0490_00197 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407667|gb|EGG87165.1| hypothetical protein HMPREF0987_00817 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 207

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T  C  CK   C  VCP +C         I  + C+ CG C   CP  A+
Sbjct: 153 YEITHKCNGCK--ACQSVCPQNCIDFTIIPAVIRQENCLHCGNCLSICPQKAV 203


>gi|281601106|gb|ADA74090.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2002017]
 gi|332757739|gb|EGJ88068.1| hypothetical protein SF274771_2148 [Shigella flexneri 2747-71]
 gi|332758509|gb|EGJ88830.1| hypothetical protein SFK671_2125 [Shigella flexneri K-671]
 gi|332766874|gb|EGJ97074.1| 4Fe-4S ferredoxin-type protein [Shigella flexneri 2930-71]
 gi|333018063|gb|EGK37368.1| hypothetical protein SFK304_2329 [Shigella flexneri K-304]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPY 98


>gi|261403596|ref|YP_003247820.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370589|gb|ACX73338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 658

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV  + C  C    C  VCP++   E +                      I  + CI CG
Sbjct: 239 YVDEDICTGC--GACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAIPLVYTIDMEHCIRCG 296

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +CE  C   AI+ D +P    
Sbjct: 297 LCEKACGPGAIRYDQKPEEIK 317



 Score = 38.0 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C  C    C ++CP +        G     ++   C  CG C   CP  A++
Sbjct: 578 VDEDVCGGC--QVCAKMCPYNAITYVEKDGHLIAQVNDVACKGCGACAGACPSGAMQ 632


>gi|271499405|ref|YP_003332430.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270342960|gb|ACZ75725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 232

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           ++C  C +  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 98  QSCQHCDNPPCVSVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 146


>gi|271501151|ref|YP_003334176.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270344706|gb|ACZ77471.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 180

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        + + +  ++CI C  C   CP  A+   ++P
Sbjct: 57  CRHCEDAPCANVCPNGAIVHAGDHIRVQQEKCIGCKTCVVACPYGAMTVISKP 109


>gi|182413557|ref|YP_001818623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177840771|gb|ACB75023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 551

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
           +T  C  C    C+  CPV  + +      +    D+CI C  C  +CP DA
Sbjct: 107 ITTACHHCADPACLNGCPVLAYEKDPLTGIVRHLDDQCIGCQYCILKCPYDA 158


>gi|170769899|ref|ZP_02904352.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia albertii
           TW07627]
 gi|170121193|gb|EDS90124.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia albertii
           TW07627]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|188585138|ref|YP_001916683.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349825|gb|ACB84095.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 268

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C +VCPVD      N   I   EC++CG C+ +CP D I  D E   + 
Sbjct: 214 CIGC--GVCAKVCPVDAITIENNLAYIDSHECVNCGKCKEKCPRDCITSDLEYTTKA 268



 Score = 34.6 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 18/73 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD----------------CFYEGENFLAIHPDECIDCGV 45
            ++  E C  C    C   CP D                   +G+    +    CI CGV
Sbjct: 162 PHIDPEKCTGCNK--CANTCPKDVIKMINANTKHHVRCNSCDKGKTVRQVCEVGCIGCGV 219

Query: 46  CEPECPVDAIKPD 58
           C   CPVDAI  +
Sbjct: 220 CAKVCPVDAITIE 232


>gi|157149191|ref|YP_001456510.1| hypothetical protein CKO_05031 [Citrobacter koseri ATCC BAA-895]
 gi|157086396|gb|ABV16074.1| hypothetical protein CKO_05031 [Citrobacter koseri ATCC BAA-895]
          Length = 157

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 18/55 (32%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +     C  C+   C  VCP          + +    CI C  C   CP  A+ 
Sbjct: 51  AFTTAAACRQCEDAPCANVCPTQAIRRDHGHIFVEQARCIGCKSCMLACPFGAMN 105


>gi|126699794|ref|YP_001088691.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           630]
 gi|115251231|emb|CAJ69062.1| putative oxidoreductase, Fe-S subunit [Clostridium difficile]
          Length = 140

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C+ VCP +CF + E F+ +    CI C +CE  C   A+    +     
Sbjct: 54  ACIHCNEPKCLGVCPKNCFKKEEGFIVLDNQNCIGCKLCEKACEYGALIYGNDGKANK 111


>gi|120405497|ref|YP_955326.1| nitrate reductase subunit beta [Mycobacterium vanbaalenii PYR-1]
 gi|119958315|gb|ABM15320.1| respiratory nitrate reductase beta subunit [Mycobacterium
           vanbaalenii PYR-1]
          Length = 550

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|37526279|ref|NP_929623.1| electron transport complex protein RnfB [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785710|emb|CAE14694.1| Electron transport complex protein RnfB [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 210

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  ENCI C  T C++ CPVD           I  D C  C +C   CP D I  
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIVGATRAMHTIVEDLCTGCDLCVAPCPTDCITM 164


>gi|86135088|ref|ZP_01053670.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Polaribacter sp. MED152]
 gi|85821951|gb|EAQ43098.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Polaribacter sp. MED152]
          Length = 1020

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL---E 64
           C  C H  C  VCPV     G      +  + C+    C   CP    + +        +
Sbjct: 847 CQHCNHAPCETVCPVAATTHGRQGQNQMTYNRCVGTRYCANNCPYRVRRFNWFEYANNNQ 906

Query: 65  LWLKINSEYATQWPN 79
               +N+EY     N
Sbjct: 907 FDFNMNNEYGKMVLN 921


>gi|323492677|ref|ZP_08097821.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546]
 gi|323313052|gb|EGA66172.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546]
          Length = 554

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 173 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 230

Query: 53  DAIKPDTEPGLE--LWLK 68
           +AI        E   +++
Sbjct: 231 EAIHYALPNPQETQKFVE 248



 Score = 37.3 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C LC    CV VCP    +       L     +CI CG+C   CP   +  
Sbjct: 421 CTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCTKACPEQVLTM 469


>gi|320656571|gb|EFX24467.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|313898502|ref|ZP_07832039.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312956884|gb|EFR38515.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 257

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C + CP       +    I   ECI CG C   CP  A+
Sbjct: 13 CIGC--GQCAKDCPTSNIQLKDKKAEILEAECIMCGHCAAICPKKAV 57


>gi|307299068|ref|ZP_07578870.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915493|gb|EFN45878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 356

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VV E  C+ C    C + CP            I  + CI CG C   C   A+       
Sbjct: 188 VVREKNCVAC--GMCEKNCPTGAITVDRV-ARIDYEVCIGCGQCIAMCNYGAMSAGAGGT 244

Query: 63  LELWLKINSEYA 74
            E   K  +EYA
Sbjct: 245 PESLSKKIAEYA 256


>gi|291548339|emb|CBL21447.1| Uncharacterized Fe-S center protein [Ruminococcus sp. SR1/5]
          Length = 374

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            + C  C+   C + C  D          I  D+C  CG C   C  DA+        EL
Sbjct: 194 EDVCRGCR--RCAKECGSDAITYVNKKAVIDYDKCKGCGRCIGACSYDAVYNPNSSANEL 251

Query: 66  WLKINSEYAT 75
             +  +EYA 
Sbjct: 252 LDRKMAEYAQ 261


>gi|291521285|emb|CBK79578.1| C_GCAxxG_C_C family probable redox protein [Coprococcus catus GD/7]
          Length = 452

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           TE C  CK       CP+      +  + I PD+C  CG C  +CP  
Sbjct: 313 TELCKGCKKCQLEAACPISLPKVVDGKVFIDPDKCNRCGRCLHKCPFH 360


>gi|242243803|ref|ZP_04798247.1| nitrate reductase [Staphylococcus epidermidis W23144]
 gi|242232739|gb|EES35051.1| nitrate reductase [Staphylococcus epidermidis W23144]
          Length = 517

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|160890331|ref|ZP_02071334.1| hypothetical protein BACUNI_02772 [Bacteroides uniformis ATCC 8492]
 gi|156860063|gb|EDO53494.1| hypothetical protein BACUNI_02772 [Bacteroides uniformis ATCC 8492]
          Length = 300

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGC--GKCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTI 265



 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +  ++C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEEKCTACGACAKACPKSII 188


>gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 634

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C  T C   CPV     + +    I  D+CI CG C+  C   A+
Sbjct: 585 KCKGC--TACARKCPVGAITGKVKEVHVIDADKCIKCGACKAACKFGAV 631


>gi|148555900|ref|YP_001263482.1| NADH dehydrogenase subunit I [Sphingomonas wittichii RW1]
 gi|148501090|gb|ABQ69344.1| NADH-quinone oxidoreductase, chain I [Sphingomonas wittichii RW1]
          Length = 161

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       I  K + L +  + +
Sbjct: 117 V--EGPNFEYSTETREEL------IYDKAKLLANGDRWE 147


>gi|145299279|ref|YP_001142120.1| formate-dependent nitrite reductase, 4Fe4S subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142852051|gb|ABO90372.1| formate-dependent nitrite reductase, 4Fe4S subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 226

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    +    +  + + PD C+ C  C   CP  
Sbjct: 96  SCQHCDNAPCVHVCPTGASHIRAEDGIVDVDPDLCVGCMYCLAACPYQ 143


>gi|78188921|ref|YP_379259.1| polysulfide reductase, subunit B, putative [Chlorobium
           chlorochromatii CaD3]
 gi|78171120|gb|ABB28216.1| polysulfide reductase, subunit B, putative [Chlorobium
           chlorochromatii CaD3]
          Length = 199

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++T C+  CP    ++ ++ +  ++ D CI C  C   CP DA        +E   
Sbjct: 60  CMHCENTPCMSACPTGATWKNKDGVILVNYDRCIGCYACCIACPYDARYAYNNHDVEEAE 119

Query: 68  KINSEYATQW 77
           K+  + ++  
Sbjct: 120 KLYGKLSSHT 129


>gi|90426048|ref|YP_534418.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
 gi|90108062|gb|ABD90099.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 188

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   C++ CP    Y     + +    C+ C  C   CP   ++  T P    +
Sbjct: 58  CHHCEEAPCLKACPSGAIYYKAGTVQVDQSHCLGCKTCVVACPFGVMEVITHPTYRTF 115


>gi|332346076|gb|AEE59410.1| cytochrome c nitrite reductase, Fe-S protein NrfC [Escherichia coli
           UMNK88]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|298674635|ref|YP_003726385.1| nitrite and sulphite reductase [Methanohalobium evestigatum Z-7303]
 gi|298287623|gb|ADI73589.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium
           evestigatum Z-7303]
          Length = 623

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V +NC  C    C +VC ++           + + CI CG C   CP DA   + E  +
Sbjct: 493 VNDNCNGC--GRCADVCKLEAISVRGTTSYTNYNVCIGCGKCIKACPNDARDIEKEGYM 549


>gi|242372056|ref|ZP_04817630.1| nitrate reductase [Staphylococcus epidermidis M23864:W1]
 gi|242350168|gb|EES41769.1| nitrate reductase [Staphylococcus epidermidis M23864:W1]
          Length = 517

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|268678911|ref|YP_003303342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616942|gb|ACZ11307.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 188

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C++C++  CV VCP    ++    L  I    CI C  C   CP  A
Sbjct: 58  ACVMCENPPCVSVCPTFASFQDAQGLVHIDERVCITCKYCILACPYHA 105


>gi|254439108|ref|ZP_05052602.1| NADH-quinone oxidoreductase, chain I subfamily [Octadecabacter
           antarcticus 307]
 gi|198254554|gb|EDY78868.1| NADH-quinone oxidoreductase, chain I subfamily [Octadecabacter
           antarcticus 307]
          Length = 168

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 66  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 123

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 124 V--EGPNFEFSTETREEL------YYDKEKLLDNGDRWEAE 156


>gi|194446804|ref|YP_002043530.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405467|gb|ACF65689.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAANGIVDVNPDLCVGCQYCIAACPYR 138


>gi|7321231|emb|CAB82174.1| nitrate reductase beta-subunit [Pseudomonas sp. SK-1-3-1]
          Length = 321

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFNWK 221


>gi|27468892|ref|NP_765529.1| nitrate reductase beta chain narH [Staphylococcus epidermidis ATCC
           12228]
 gi|57865453|ref|YP_189542.1| respiratory nitrate reductase, beta subunit [Staphylococcus
           epidermidis RP62A]
 gi|251811899|ref|ZP_04826372.1| nitrate reductase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875189|ref|ZP_06284062.1| nitrate reductase, beta subunit [Staphylococcus epidermidis SK135]
 gi|293367104|ref|ZP_06613776.1| respiratory nitrate reductase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316440|gb|AAO05615.1|AE016750_220 nitrate reductase beta chain narH [Staphylococcus epidermidis ATCC
           12228]
 gi|57636111|gb|AAW52899.1| respiratory nitrate reductase, beta subunit [Staphylococcus
           epidermidis RP62A]
 gi|251804578|gb|EES57235.1| nitrate reductase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295954|gb|EFA88475.1| nitrate reductase, beta subunit [Staphylococcus epidermidis SK135]
 gi|291318834|gb|EFE59208.1| respiratory nitrate reductase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726559|gb|EGG63022.1| nitrate reductase, beta subunit [Staphylococcus epidermidis VCU144]
 gi|329733803|gb|EGG70127.1| nitrate reductase, beta subunit [Staphylococcus epidermidis VCU028]
 gi|329734551|gb|EGG70862.1| nitrate reductase, beta subunit [Staphylococcus epidermidis VCU045]
          Length = 517

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|54026523|ref|YP_120765.1| putative nitrate reductase subunit beta [Nocardia farcinica IFM
           10152]
 gi|54018031|dbj|BAD59401.1| putative nitrate reductase beta subunit [Nocardia farcinica IFM
           10152]
          Length = 568

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+   +  + +  D C     C   CP   I  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKRAEDGIVLVDQDACRGWRQCVTGCPYKKIYF 232


>gi|88706625|ref|ZP_01104328.1| Electron transport complex protein rnfB [Congregibacter litoralis
           KT71]
 gi|88699121|gb|EAQ96237.1| Electron transport complex protein rnfB [Congregibacter litoralis
           KT71]
          Length = 202

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +++ E+CI C  T C++ CPVD      +    +   EC  C +C   CPVD I+ 
Sbjct: 114 AFIIEEDCIGC--TKCIQACPVDAILGAAKQMHTVIASECTGCDLCVDPCPVDCIEM 168


>gi|26250880|ref|NP_756920.1| NrfC protein [Escherichia coli CFT073]
 gi|91213615|ref|YP_543601.1| NrfC protein [Escherichia coli UTI89]
 gi|110644424|ref|YP_672154.1| NrfC protein [Escherichia coli 536]
 gi|117626354|ref|YP_859677.1| formate-dependent nitire reductase subunit NrfC [Escherichia coli
           APEC O1]
 gi|191171961|ref|ZP_03033506.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli F11]
 gi|215489417|ref|YP_002331848.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218561157|ref|YP_002394070.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli S88]
 gi|218692364|ref|YP_002400576.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ED1a]
 gi|227886899|ref|ZP_04004704.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           83972]
 gi|237703652|ref|ZP_04534133.1| formate-dependent nitrite reductase subunit NrfC [Escherichia sp.
           3_2_53FAA]
 gi|300973868|ref|ZP_07172357.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           45-1]
 gi|300980240|ref|ZP_07174898.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           200-1]
 gi|301051420|ref|ZP_07198230.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           185-1]
 gi|306815806|ref|ZP_07449951.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli NC101]
 gi|312965680|ref|ZP_07779909.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           2362-75]
 gi|331660652|ref|ZP_08361584.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA206]
 gi|26111312|gb|AAN83494.1|AE016771_5 NrfC protein [Escherichia coli CFT073]
 gi|91075189|gb|ABE10070.1| NrfC protein [Escherichia coli UTI89]
 gi|110346016|gb|ABG72253.1| NrfC protein [Escherichia coli 536]
 gi|115515478|gb|ABJ03553.1| formate-dependent nitire reductase subunit NrfC [Escherichia coli
           APEC O1]
 gi|190907726|gb|EDV67320.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli F11]
 gi|215267489|emb|CAS11943.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218367926|emb|CAR05723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli S88]
 gi|218429928|emb|CAR10905.2| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ED1a]
 gi|222035795|emb|CAP78540.1| Protein nrfC [Escherichia coli LF82]
 gi|226901564|gb|EEH87823.1| formate-dependent nitrite reductase subunit NrfC [Escherichia sp.
           3_2_53FAA]
 gi|227836040|gb|EEJ46506.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           83972]
 gi|294489652|gb|ADE88408.1| 4Fe-4S binding domain protein [Escherichia coli IHE3034]
 gi|300296950|gb|EFJ53335.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           185-1]
 gi|300307807|gb|EFJ62327.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           200-1]
 gi|300410678|gb|EFJ94216.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           45-1]
 gi|305850781|gb|EFM51237.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli NC101]
 gi|307556236|gb|ADN49011.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ABU 83972]
 gi|307629137|gb|ADN73441.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UM146]
 gi|312289654|gb|EFR17545.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           2362-75]
 gi|312948660|gb|ADR29487.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315287909|gb|EFU47311.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           110-3]
 gi|315294773|gb|EFU54116.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           153-1]
 gi|315297484|gb|EFU56763.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           16-3]
 gi|320193444|gb|EFW68081.1| NrfC protein [Escherichia coli WV_060327]
 gi|323190048|gb|EFZ75326.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           RN587/1]
 gi|323950368|gb|EGB46249.1| cytochrome c nitrite reductase [Escherichia coli H252]
 gi|323954449|gb|EGB50233.1| cytochrome c nitrite reductase [Escherichia coli H263]
 gi|324009516|gb|EGB78735.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           57-2]
 gi|324015614|gb|EGB84833.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           60-1]
 gi|331051694|gb|EGI23733.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA206]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|331664457|ref|ZP_08365363.1| putative electron transport protein YgfS [Escherichia coli TA143]
 gi|331058388|gb|EGI30369.1| putative electron transport protein YgfS [Escherichia coli TA143]
          Length = 151

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|325281384|ref|YP_004253926.1| Fe-S center protein, putative ferredoxin [Odoribacter splanchnicus
           DSM 20712]
 gi|324313193|gb|ADY33746.1| uncharacterized Fe-S center protein, putative ferredoxin
           [Odoribacter splanchnicus DSM 20712]
          Length = 372

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + ++NC  C    C++ C  +  +   ++   I    C+ CG C   C  DA      
Sbjct: 189 PVIDSQNCKKC--GICIKHCAHEAIHFDAQHIAEIDYSRCVGCGQCVALCQYDAAVMGES 246

Query: 61  PGLELWLKINSEYATQWPNITTKKE 85
              E    +N + A     +   K 
Sbjct: 247 DTSER---LNYKIAEYTQAVLKDKP 268


>gi|319893356|ref|YP_004150231.1| Respiratory nitrate reductase beta chain [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163052|gb|ADV06595.1| Respiratory nitrate reductase beta chain [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463594|gb|ADX75747.1| nitrate reductase, beta subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 518

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|313772634|gb|EFS38600.1| nitrate reductase, beta subunit [Propionibacterium acnes HL074PA1]
 gi|313831975|gb|EFS69689.1| nitrate reductase, beta subunit [Propionibacterium acnes HL007PA1]
 gi|313834485|gb|EFS72199.1| nitrate reductase, beta subunit [Propionibacterium acnes HL056PA1]
 gi|314974486|gb|EFT18581.1| nitrate reductase, beta subunit [Propionibacterium acnes HL053PA1]
 gi|314977322|gb|EFT21417.1| nitrate reductase, beta subunit [Propionibacterium acnes HL045PA1]
 gi|314985577|gb|EFT29669.1| nitrate reductase, beta subunit [Propionibacterium acnes HL005PA1]
 gi|315097557|gb|EFT69533.1| nitrate reductase, beta subunit [Propionibacterium acnes HL038PA1]
 gi|327331591|gb|EGE73330.1| nitrate reductase, beta subunit [Propionibacterium acnes HL096PA2]
 gi|327447013|gb|EGE93667.1| nitrate reductase, beta subunit [Propionibacterium acnes HL043PA1]
 gi|327449951|gb|EGE96605.1| nitrate reductase, beta subunit [Propionibacterium acnes HL043PA2]
 gi|328761722|gb|EGF75237.1| nitrate reductase, beta subunit [Propionibacterium acnes HL099PA1]
          Length = 507

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+ +    + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPTCVSACPSGAIYKRDEDGIVLVDQDHCRGWRMCVSGCPYKKVFF 233


>gi|307128573|ref|YP_003880603.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Sulcia muelleri CARI]
 gi|306483035|gb|ADM89905.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Sulcia muelleri CARI]
          Length = 980

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVD 53
           C  C +  C  VCPV     G+    +   + CI    C   CP  
Sbjct: 805 CQHCNNAPCETVCPVGATSHGKQGQNMMAYNRCIGTRYCANNCPYK 850


>gi|291530322|emb|CBK95907.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Eubacterium siraeum 70/3]
 gi|291557135|emb|CBL34252.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Eubacterium siraeum V10Sc8a]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPV+   EG+    I  D C+ CG C   CPV A   +
Sbjct: 1  MAYKISDDCISC--GACAAQCPVEAISEGDGKYVIDADTCVSCGACAGVCPVGAPAEE 56


>gi|325677740|ref|ZP_08157388.1| ferredoxin [Ruminococcus albus 8]
 gi|324110563|gb|EGC04731.1| ferredoxin [Ruminococcus albus 8]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + ++CI C    C+  CPV    E +    I    C+DCG C   CPV A + +
Sbjct: 1  MAYKINDDCIGC--GACMAECPVGAISEADGKCVIDASACLDCGACAGTCPVGAPQAE 56


>gi|258622882|ref|ZP_05717898.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573]
 gi|258584821|gb|EEW09554.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573]
          Length = 553

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPTDTQKFIE 247



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVD 53
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQ 464


>gi|223042492|ref|ZP_03612541.1| nitrate reductase, beta subunit [Staphylococcus capitis SK14]
 gi|222444155|gb|EEE50251.1| nitrate reductase, beta subunit [Staphylococcus capitis SK14]
          Length = 517

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|224009321|ref|XP_002293619.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
 gi|220971019|gb|EED89355.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
          Length = 150

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 24/105 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C   CP                      I   +CI CG C+  CPVDAI 
Sbjct: 49  ERCIACKL--CEAACPAQAITIDAEEREDGARRTTRYDIDMTKCIYCGFCQEACPVDAIV 106

Query: 57  PDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQK 99
                        N E+A  T    +  K++ L +  K +    K
Sbjct: 107 EGP----------NFEFATETHEELLYDKEKLLSNGDKWEKQIAK 141


>gi|126740388|ref|ZP_01756076.1| NADH dehydrogenase subunit I [Roseobacter sp. SK209-2-6]
 gi|126718524|gb|EBA15238.1| NADH dehydrogenase subunit I [Roseobacter sp. SK209-2-6]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKAKLLENGERWEAE 152


>gi|157960312|ref|YP_001500346.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157845312|gb|ABV85811.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 235

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETDVAD 164

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 165 NCDFCLNSKLA 175


>gi|313835401|gb|EFS73115.1| putative dimethylsulfoxide reductase, chain B [Propionibacterium
           acnes HL037PA2]
 gi|314929259|gb|EFS93090.1| putative dimethylsulfoxide reductase, chain B [Propionibacterium
           acnes HL044PA1]
 gi|314972422|gb|EFT16519.1| putative dimethylsulfoxide reductase, chain B [Propionibacterium
           acnes HL037PA3]
          Length = 160

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           TY  + +C  C+    +EVCP       ++  + +  D+C+ C  CE  CP  A
Sbjct: 105 TYYTSISCNHCEDPIYMEVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSA 158


>gi|331681003|ref|ZP_08381640.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H299]
 gi|331081224|gb|EGI52385.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H299]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|296170053|ref|ZP_06851656.1| respiratory nitrate reductase, beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895263|gb|EFG74973.1| respiratory nitrate reductase, beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 540

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469]
 gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469]
          Length = 626

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V+  E C  C    C + CPV            I P+ CI C  C+  C  DAI  +
Sbjct: 570 FVINPEYCKGC--GKCAKNCPVGAITGVRRECYHIDPNICIKCSACKDNCAFDAIYVE 625


>gi|158522522|ref|YP_001530392.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158511348|gb|ABW68315.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 672

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 10  ILCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + C     CV  CP      GEN L  +  ++C  CG CE  CP   I
Sbjct: 141 VGCLGLGTCVRACPFGALTMGENGLPVVDREKCTGCGTCERVCPKHII 188


>gi|7321249|emb|CAB82183.1| nitrate reductase beta-subunit [Pseudomonas stutzeri]
          Length = 327

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKMIYFNWK 221


>gi|56479116|ref|YP_160705.1| molybdenum enzyme related to thiosulfate reductase and polysulfide
           reductase, medium subunit [Aromatoleum aromaticum EbN1]
 gi|56315159|emb|CAI09804.1| Molybdenum enzyme related to thiosulfate reductase and polysulfide
           reductase, medium subunit [Aromatoleum aromaticum EbN1]
          Length = 236

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  CPV+  ++ ++   +    + CI C  C   CP +A   
Sbjct: 75  CNHCDDPPCVRSCPVEATFKVDDGGFVLQRYERCIGCRSCMAACPYNARFM 125


>gi|328473707|gb|EGF44542.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 10329]
          Length = 553

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPEDTQKFIE 247



 Score = 36.9 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
            ++C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 417 NKDCTLC--MSCVAVCPTRALHTDGQSPSLKFVEQDCIQCGLCEKACP 462


>gi|269968577|ref|ZP_06182579.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 40B]
 gi|269826788|gb|EEZ81120.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 40B]
          Length = 553

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPEDTQKFIE 247



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGRSPSLKFVEQDCIQCGLCEKACP 462


>gi|262171465|ref|ZP_06039143.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451]
 gi|261892541|gb|EEY38527.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451]
          Length = 553

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPTDTQKFIE 247



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVD 53
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQ 464


>gi|260221131|emb|CBA29389.1| Electron transport complex protein rnfB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 229

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++  + CI C  T C++ CP D      +    +    C  C +C P CPVD I  +T
Sbjct: 85  FIDEDWCIGC--TLCIKACPTDAIIGSNKRMHTVIEPHCTGCELCLPVCPVDCIMVET 140


>gi|167628355|ref|YP_001678854.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum
           Ice1]
 gi|167591095|gb|ABZ82843.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum
           Ice1]
          Length = 374

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   C++ CP D     E    +  D+CI C  C+  CP  A+
Sbjct: 313 DKCIGCR--ICLQSCPADALRM-ERIPQLDKDKCIGCLCCQEMCPERAV 358


>gi|91216970|ref|ZP_01253933.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Psychroflexus torquis ATCC 700755]
 gi|91184841|gb|EAS71221.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Psychroflexus torquis ATCC 700755]
          Length = 1024

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     +   
Sbjct: 851 CQHCNHAPCETVCPVAASAHGRQGQNHMTYNRCVGTRYCANNCPYKVRRFNWFLYNQ--- 907

Query: 68  KINSEY 73
             N E+
Sbjct: 908 --NDEF 911


>gi|29347244|ref|NP_810747.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339143|gb|AAO76941.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI     P
Sbjct: 107 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIPVP 166

Query: 62  GLE 64
             E
Sbjct: 167 CEE 169



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + C+ C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 140 IDHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMN 199

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 200 ACPFGAIF 207


>gi|54309051|ref|YP_130071.1| iron-sulfur cluster-binding protein [Photobacterium profundum SS9]
 gi|46913483|emb|CAG20269.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum SS9]
          Length = 581

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C    CV+ CP        + + I+P  C   G C   CP +AI        +
Sbjct: 208 NGCN--RCVDACPAGALSSIGHAIEINPYLCQGVGTCATACPTEAITYALPDPEK 260



 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           T++C LC    CV VCP   F+   G   L +  ++CI CG+CE  CP
Sbjct: 446 TDDCTLC--MSCVAVCPTRAFHAVGGRPGLQLIEEDCIQCGLCEKACP 491


>gi|28378214|ref|NP_785106.1| nitrate reductase, beta chain [Lactobacillus plantarum WCFS1]
 gi|254556421|ref|YP_003062838.1| nitrate reductase, beta chain [Lactobacillus plantarum JDM1]
 gi|28271049|emb|CAD63954.1| nitrate reductase, beta chain [Lactobacillus plantarum WCFS1]
 gi|254045348|gb|ACT62141.1| nitrate reductase, beta chain [Lactobacillus plantarum JDM1]
          Length = 519

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNAPCVASCPSGAMYKRDEDGIVLVDQERCRGWRFCMTGCPYKKVYFN 234

Query: 59  TEPGLEL 65
            +     
Sbjct: 235 WKTHKAE 241


>gi|330994062|ref|ZP_08317992.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter sp.
           SXCC-1]
 gi|329759008|gb|EGG75522.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter sp.
           SXCC-1]
          Length = 162

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP +                    I   +CI CG+CE  CPVDAI
Sbjct: 60  EERCIACKL--CEATCPAEAITIEAEPRDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K + L +  + + V
Sbjct: 118 V--EGPNYEFATETREEL------MYNKDKLLANGDRWESV 150


>gi|218883735|ref|YP_002428117.1| flavoprotein [Desulfurococcus kamchatkensis 1221n]
 gi|218765351|gb|ACL10750.1| archaeal flavoprotein [Desulfurococcus kamchatkensis 1221n]
          Length = 237

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  V+  + C +C      E CP         + + + P  C  C +C   CP +AI  D
Sbjct: 141 MPLVIDRDKCSMCDKCIAAENCPTGALRPDPRHKVRVSPARCTKCFICRKICPYNAIHFD 200

Query: 59  TE 60
            E
Sbjct: 201 VE 202


>gi|212634095|ref|YP_002310620.1| polysulfide reductase subunit B [Shewanella piezotolerans WP3]
 gi|212555579|gb|ACJ28033.1| Polysulfide reductase, subunit B [Shewanella piezotolerans WP3]
          Length = 190

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C++  CV+VCP    Y  ++ +  I+  +C+ C  C   CP      + E
Sbjct: 59  SCEQCENAPCVKVCPTGAAYVNDDGIVSINEGKCVGCLYCVAACPYKVRFINPE 112


>gi|113868290|ref|YP_726779.1| polyferredoxin [Ralstonia eutropha H16]
 gi|113527066|emb|CAJ93411.1| Polyferredoxin [Ralstonia eutropha H16]
          Length = 492

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI CG C   C     K +   GL  +  
Sbjct: 279 CVNCS--ICVQVCPTGIDIRDGLQY-----ECIGCGACIDACDQVMDKMEYPRGLIRYTS 331

Query: 69  INS 71
            N+
Sbjct: 332 ENA 334


>gi|11497625|ref|NP_068845.1| putative ATPase RIL [Archaeoglobus fulgidus DSM 4304]
 gi|2650646|gb|AAB91222.1| RNase L inhibitor [Archaeoglobus fulgidus DSM 4304]
          Length = 586

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 2  TYVVTENC--ILCKHTDCVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  E C    C   +CV+ CP     D   + E+   I  + C+ CG+C  +CP+ AI
Sbjct: 6  AVVDRERCQPKKC-GQECVKYCPRVRTGDETVKIEDKAVISENLCVGCGICVKKCPMHAI 64

Query: 56 K 56
           
Sbjct: 65 W 65


>gi|34556813|ref|NP_906628.1| putative nitrite reductase, formate-dependent, Fe-S centers
           [Wolinella succinogenes DSM 1740]
 gi|34482528|emb|CAE09528.1| PUTATIVE NITRITE REDUCTASE, FORMATE-DEPENDENT, FE-S CENTERS
           [Wolinella succinogenes]
          Length = 225

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   CV VCP    ++ E    + ++P++CI C  C   CP D    + E     
Sbjct: 95  SCQQCEDAPCVSVCPTKACHKDEQTGIVTMNPEDCIACKYCIVACPYDVRFINHETKAAE 154


>gi|28898284|ref|NP_797889.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837769|ref|ZP_01990436.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ3810]
 gi|254229544|ref|ZP_04922957.1| Ferredoxin [Vibrio sp. Ex25]
 gi|260361866|ref|ZP_05774875.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus K5030]
 gi|260878621|ref|ZP_05890976.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260896153|ref|ZP_05904649.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           Peru-466]
 gi|262394268|ref|YP_003286122.1| iron-sulfur cluster-binding protein [Vibrio sp. Ex25]
 gi|28806501|dbj|BAC59773.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748874|gb|EDM59709.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ3810]
 gi|151937917|gb|EDN56762.1| Ferredoxin [Vibrio sp. Ex25]
 gi|262337862|gb|ACY51657.1| iron-sulfur cluster-binding protein [Vibrio sp. Ex25]
 gi|308086193|gb|EFO35888.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308091268|gb|EFO40963.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308111393|gb|EFO48933.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus K5030]
          Length = 553

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPEDTQKFIE 247



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGQSPSLKFVEQDCIQCGLCEKACP 462


>gi|325970932|ref|YP_004247123.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta sp. Buddy]
 gi|324026170|gb|ADY12929.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta sp. Buddy]
          Length = 55

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T+ C+ C    C   CP     EG+    I  D CIDCG C   CP  AI  
Sbjct: 1  MAYKITDACVAC--GTCQPECPTGAISEGD-IYVIDADACIDCGTCADVCPTAAIIQ 54


>gi|326791477|ref|YP_004309298.1| PAS/PAC sensor protein [Clostridium lentocellum DSM 5427]
 gi|326542241|gb|ADZ84100.1| putative PAS/PAC sensor protein [Clostridium lentocellum DSM
          5427]
          Length = 569

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          NC  C    CV  CPV+          I  + CI CG C   CP +A    +E
Sbjct: 10 NCKNCY--ACVRACPVNAIQVQAEQAKIVKERCIGCGKCLKVCPKNAKHVQSE 60



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY 27
          +V E CI C    C++VCP +  +
Sbjct: 35 IVKERCIGC--GKCLKVCPKNAKH 56


>gi|295101884|emb|CBK99429.1| Uncharacterized Fe-S center protein [Faecalibacterium prausnitzii
           L2-6]
          Length = 374

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + C  C    C + C  D   Y  +N   I  D+C  CG C   C  DAI    +  
Sbjct: 192 VQEDLCRGC--HRCAKECGSDAIRYNEKNKAVIDQDKCKGCGRCIGACSFDAIYALCDSA 249

Query: 63  LELWLKINSEYAT 75
            E+  +  +EYA 
Sbjct: 250 NEMLDRKMAEYAA 262


>gi|254162798|ref|YP_003045906.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli B str. REL606]
 gi|253974699|gb|ACT40370.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli B str. REL606]
 gi|253978865|gb|ACT44535.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli BL21(DE3)]
          Length = 110

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 3  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 57


>gi|269925728|ref|YP_003322351.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789388|gb|ACZ41529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 279

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C    C+EVCP       E   + I  D C  C  C   CP   I
Sbjct: 86  SDVCKHCVQAGCLEVCPTGAIIRTEYDTVVIQSDVCNGCRACIAACPFGVI 136


>gi|255655815|ref|ZP_05401224.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-23m63]
 gi|296450946|ref|ZP_06892693.1| anaerobic sulfite reductase subunit C [Clostridium difficile NAP08]
 gi|296879088|ref|ZP_06903084.1| anaerobic sulfite reductase subunit C [Clostridium difficile NAP07]
 gi|296260164|gb|EFH07012.1| anaerobic sulfite reductase subunit C [Clostridium difficile NAP08]
 gi|296429961|gb|EFH15812.1| anaerobic sulfite reductase subunit C [Clostridium difficile NAP07]
          Length = 315

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +E C+ CK    VE CPV          L I  + C +CG C   C  D+I
Sbjct: 168 DSELCVGCKKCAVVEACPVKAAKLTDNGKLEIDSNLCNNCGKCIESCNFDSI 219


>gi|186920127|ref|YP_001874781.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii]
 gi|186461073|gb|ACC78235.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii]
          Length = 163

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPAQAITIEAEPRYDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N EYA  T    +  K++ L +  + +
Sbjct: 119 VEGP----------NFEYATETHEELLYNKEKLLKNGDRWE 149


>gi|167622511|ref|YP_001672805.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352533|gb|ABZ75146.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 236

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 106 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIAACPYDARFINKETDVAD 165

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 166 NCDFCLNSKLA 176


>gi|153808573|ref|ZP_01961241.1| hypothetical protein BACCAC_02869 [Bacteroides caccae ATCC 43185]
 gi|149128895|gb|EDM20112.1| hypothetical protein BACCAC_02869 [Bacteroides caccae ATCC 43185]
          Length = 343

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP     +G+        +CI C  C   CP +A   DT 
Sbjct: 276 CTHC--GLCVVHCPAGAITKGDELNV-DETKCIKCCACVKVCPRNAKVYDTP 324



 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           V    CI C    CV+VCP +       F 
Sbjct: 299 VDETKCIKC--CACVKVCPRNAKVYDTPFA 326


>gi|114765005|ref|ZP_01444152.1| NADH dehydrogenase subunit I [Pelagibaca bermudensis HTCC2601]
 gi|114542552|gb|EAU45577.1| NADH dehydrogenase subunit I [Roseovarius sp. HTCC2601]
          Length = 164

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E       E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATDTREELF------YDKQKLLENGERWEAE 152


>gi|146296868|ref|YP_001180639.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145410444|gb|ABP67448.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 598

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C + CP +           I  ++CI CGVC  +CP  AI
Sbjct: 544 IDKDLCKGC--GICAKNCPANAITGQIKKPFEIDQEKCIKCGVCIEKCPFKAI 594



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + CP     +    + I  D C  CG+C   CP +AI    +   E
Sbjct: 528 EKRCPAGAC-KALLRIVIDKDLCKGCGICAKNCPANAITGQIKKPFE 573


>gi|328783520|ref|XP_003250306.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial isoform 1 [Apis mellifera]
          Length = 175

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 73  EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 130

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 131 VEGP----------NFEFSTETHEELLYNKEKLLNNGDKWESE 163


>gi|281181155|dbj|BAI57485.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE15]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|262165720|ref|ZP_06033457.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223]
 gi|262025436|gb|EEY44104.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223]
          Length = 553

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPTDTQKFIE 247



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVD 53
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQ 464


>gi|260913866|ref|ZP_05920340.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
 gi|260631953|gb|EEX50130.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
          Length = 197

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  E CI C  T C++ CPVD      +    I PD C  C +C P CP D I  
Sbjct: 107 AFIDEEMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCISM 161


>gi|255067816|ref|ZP_05319671.1| ferredoxin [Neisseria sicca ATCC 29256]
 gi|255047907|gb|EET43371.1| ferredoxin [Neisseria sicca ATCC 29256]
          Length = 130

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
           M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 48  MSLFITDECINCD--VCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 105

Query: 55  IKPDTEPGLELWLKINSEY 73
           I  D E   E   ++ ++Y
Sbjct: 106 ILID-EEHPETHEELMAKY 123


>gi|227821627|ref|YP_002825597.1| NADH dehydrogenase subunit I [Sinorhizobium fredii NGR234]
 gi|227340626|gb|ACP24844.1| NADH dehydrogenase, chain I [Sinorhizobium fredii NGR234]
          Length = 163

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKEKLLANGDRWERE 151


>gi|217969518|ref|YP_002354752.1| thiamine pyrophosphate protein domain protein TPP-binding [Thauera
           sp. MZ1T]
 gi|217506845|gb|ACK53856.1| thiamine pyrophosphate protein domain protein TPP-binding [Thauera
           sp. MZ1T]
          Length = 624

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 16/81 (19%)

Query: 2   TY-VVTENCILCKHTDCVEV-CPVDCFYEGEN------------FLAIHPDECIDCGVCE 47
            Y V+ + C  C   +C++V CP       E             F+ I    C  CG+C 
Sbjct: 543 PYKVIADKCTGC--ANCIDVGCPAIHVTRRETQVKPSGKEVELAFVRIETSACTGCGLCV 600

Query: 48  PECPVDAIKPDTEPGLELWLK 68
             C  +AI          +L 
Sbjct: 601 QPCAPEAIVHALPEHPVKFLH 621


>gi|239815128|ref|YP_002944038.1| electron transport complex, RnfABCDGE type, subunit beta
           [Variovorax paradoxus S110]
 gi|239801705|gb|ACS18772.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax
           paradoxus S110]
          Length = 214

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M  +    CI C  T C++ CP D      +    +    C  C +C P CPVD I  + 
Sbjct: 76  MAVIDEAWCIGC--TLCLDACPTDAIVGINKRMHTVIEAHCTGCELCIPVCPVDCISLEV 133

Query: 60  EPG----LELWLKINSEYA 74
           E       + W +  +E A
Sbjct: 134 ETPGRSGWQAWSQAQAEAA 152


>gi|196232899|ref|ZP_03131749.1| molybdopterin oxidoreductase [Chthoniobacter flavus Ellin428]
 gi|196223098|gb|EDY17618.1| molybdopterin oxidoreductase [Chthoniobacter flavus Ellin428]
          Length = 1259

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIH-PDECIDCGVCEPECPVD 53
           VT  C  C    C+E CPV  + +  E  +  H  D+CI C  C  +CP D
Sbjct: 112 VTTACHHCVEPACLEGCPVMAYDKDAETGIVRHLDDQCIGCQYCILKCPYD 162


>gi|167751017|ref|ZP_02423144.1| hypothetical protein EUBSIR_02002 [Eubacterium siraeum DSM 15702]
 gi|167655935|gb|EDS00065.1| hypothetical protein EUBSIR_02002 [Eubacterium siraeum DSM 15702]
          Length = 275

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T  CI CK   C + CP       +N   I  D+C  CG C   CP   +   T    
Sbjct: 210 VCTNGCIGCK--ICEKKCPHGAVIVADNHAVIDYDKCTSCGTCVSACPRKCLVNITCTHS 267

Query: 64  EL 65
           E 
Sbjct: 268 EK 269



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  + DC  VC  D     +    + P +C  CG C   CP   I    E
Sbjct: 140 GCDGYGDCAAVCGNDAITITDGVAVVDPAKCGGCGKCVTACPNHLIFLRKE 190


>gi|157148004|ref|YP_001455323.1| hypothetical protein CKO_03811 [Citrobacter koseri ATCC BAA-895]
 gi|157085209|gb|ABV14887.1| hypothetical protein CKO_03811 [Citrobacter koseri ATCC BAA-895]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|158520198|ref|YP_001528068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509024|gb|ABW65991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 355

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C  C+   CV+ C  +     ++    ++PD CI CG+C   CP +A+    +   + 
Sbjct: 277 DACTGCE--TCVDRCQTNALAMDDDGLAVLNPDRCIGCGLCVITCPSEALSLQAKSPEQQ 334

Query: 66  W 66
           +
Sbjct: 335 Y 335


>gi|16762960|ref|NP_458577.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144447|ref|NP_807789.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213021319|ref|ZP_03335766.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163055|ref|ZP_03348765.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427238|ref|ZP_03359988.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213622746|ref|ZP_03375529.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647382|ref|ZP_03377435.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213859692|ref|ZP_03385396.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25285334|pir||AF1020 cytochrome c-type biogenesis protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505267|emb|CAD09263.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140085|gb|AAO71649.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|15804664|ref|NP_290705.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 EDL933]
 gi|15834308|ref|NP_313081.1| NrfC [Escherichia coli O157:H7 str. Sakai]
 gi|16131898|ref|NP_418496.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|24115338|ref|NP_709848.1| formate-dependent nitrite reductase [Shigella flexneri 2a str. 301]
 gi|30064661|ref|NP_838832.1| formate-dependent nitrite reductase [Shigella flexneri 2a str.
           2457T]
 gi|74314565|ref|YP_312984.1| formate-dependent nitrite reductase [Shigella sonnei Ss046]
 gi|82546416|ref|YP_410363.1| formate-dependent nitrite reductase complex Fe-S centers [Shigella
           boydii Sb227]
 gi|89110793|ref|AP_004573.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|110807909|ref|YP_691429.1| formate-dependent nitrite reductase [Shigella flexneri 5 str. 8401]
 gi|157157837|ref|YP_001465576.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E24377A]
 gi|157163542|ref|YP_001460860.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli HS]
 gi|168748075|ref|ZP_02773097.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755247|ref|ZP_02780254.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760926|ref|ZP_02785933.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766336|ref|ZP_02791343.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774435|ref|ZP_02799442.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780489|ref|ZP_02805496.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784693|ref|ZP_02809700.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC869]
 gi|168798260|ref|ZP_02823267.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC508]
 gi|170021929|ref|YP_001726883.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli ATCC
           8739]
 gi|170083526|ref|YP_001732846.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|188495798|ref|ZP_03003068.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           53638]
 gi|191168764|ref|ZP_03030541.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli B7A]
 gi|194432233|ref|ZP_03064521.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           1012]
 gi|195935857|ref|ZP_03081239.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808344|ref|ZP_03250681.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811978|ref|ZP_03253307.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819115|ref|ZP_03259435.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396255|ref|YP_002273613.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209921558|ref|YP_002295642.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE11]
 gi|217325897|ref|ZP_03441981.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|218556630|ref|YP_002389544.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI1]
 gi|218697781|ref|YP_002405448.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli 55989]
 gi|218707694|ref|YP_002415213.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UMN026]
 gi|238903181|ref|YP_002928977.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BW2952]
 gi|253775300|ref|YP_003038131.1| cytochrome C nitrite reductase, Fe-S protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164007|ref|YP_003047115.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli B str. REL606]
 gi|254796092|ref|YP_003080929.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|256019721|ref|ZP_05433586.1| formate-dependent nitrite reductase, 4Fe4S subunit [Shigella sp.
           D9]
 gi|256024946|ref|ZP_05438811.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia sp.
           4_1_40B]
 gi|260858182|ref|YP_003232073.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|260870831|ref|YP_003237233.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O111:H- str. 11128]
 gi|261225191|ref|ZP_05939472.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261255557|ref|ZP_05948090.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285489|ref|YP_003502307.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. CB9615]
 gi|293402711|ref|ZP_06646808.1| cytochrome c nitrite reductase [Escherichia coli FVEC1412]
 gi|293407806|ref|ZP_06651646.1| cytochrome c nitrite reductase [Escherichia coli B354]
 gi|293417577|ref|ZP_06660199.1| cytochrome c nitrite reductase [Escherichia coli B185]
 gi|293476377|ref|ZP_06664785.1| cytochrome c nitrite reductase [Escherichia coli B088]
 gi|298378240|ref|ZP_06988124.1| formate-dependent nitrite reductase [Escherichia coli FVEC1302]
 gi|300817994|ref|ZP_07098207.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           107-1]
 gi|300824670|ref|ZP_07104777.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           119-7]
 gi|300897486|ref|ZP_07115904.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           198-1]
 gi|300906393|ref|ZP_07124091.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           84-1]
 gi|300916948|ref|ZP_07133648.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           115-1]
 gi|300930495|ref|ZP_07145894.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           187-1]
 gi|300946659|ref|ZP_07160916.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           116-1]
 gi|300957506|ref|ZP_07169716.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           175-1]
 gi|301019230|ref|ZP_07183426.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           196-1]
 gi|301021611|ref|ZP_07185607.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           69-1]
 gi|301302762|ref|ZP_07208891.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           124-1]
 gi|301645068|ref|ZP_07245030.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           146-1]
 gi|307140763|ref|ZP_07500119.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           H736]
 gi|307312086|ref|ZP_07591723.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli W]
 gi|309795881|ref|ZP_07690295.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           145-7]
 gi|312974130|ref|ZP_07788301.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1827-70]
 gi|331644815|ref|ZP_08345932.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H736]
 gi|331655895|ref|ZP_08356883.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M718]
 gi|331665744|ref|ZP_08366638.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA143]
 gi|331670938|ref|ZP_08371772.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA271]
 gi|331680203|ref|ZP_08380862.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H591]
 gi|332280856|ref|ZP_08393269.1| nrfC [Shigella sp. D9]
 gi|77416666|sp|P0AAK8|NRFC_ECO57 RecName: Full=Protein nrfC; Flags: Precursor
 gi|77416667|sp|P0AAK7|NRFC_ECOLI RecName: Full=Protein nrfC; Flags: Precursor
 gi|77416668|sp|P0AAK9|NRFC_SHIFL RecName: Full=Protein nrfC; Flags: Precursor
 gi|12519029|gb|AAG59270.1|AE005640_4 formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. EDL933]
 gi|404304|emb|CAA51043.1| nrfC [Escherichia coli]
 gi|2367345|gb|AAC77042.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13364531|dbj|BAB38477.1| formate-dependent nitrite reductase NrfC [Escherichia coli O157:H7
           str. Sakai]
 gi|24054641|gb|AAN45555.1| formate-dependent nitrite reductase [Shigella flexneri 2a str. 301]
 gi|30042920|gb|AAP18643.1| formate-dependent nitrite reductase [Shigella flexneri 2a str.
           2457T]
 gi|73858042|gb|AAZ90749.1| formate-dependent nitrite reductase [Shigella sonnei Ss046]
 gi|81247827|gb|ABB68535.1| formate-dependent nitrite reductase complex Fe-S centers [Shigella
           boydii Sb227]
 gi|85676824|dbj|BAE78074.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|110617457|gb|ABF06124.1| NrfC protein [Shigella flexneri 5 str. 8401]
 gi|157069222|gb|ABV08477.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli HS]
 gi|157079867|gb|ABV19575.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E24377A]
 gi|169756857|gb|ACA79556.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli ATCC
           8739]
 gi|169891361|gb|ACB05068.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|187769817|gb|EDU33661.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017384|gb|EDU55506.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|188490997|gb|EDU66100.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           53638]
 gi|189001818|gb|EDU70804.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357547|gb|EDU75966.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364249|gb|EDU82668.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368569|gb|EDU86985.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374793|gb|EDU93209.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC869]
 gi|189379215|gb|EDU97631.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC508]
 gi|190901191|gb|EDV60963.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli B7A]
 gi|194419436|gb|EDX35517.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           1012]
 gi|208728145|gb|EDZ77746.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733255|gb|EDZ81942.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739238|gb|EDZ86920.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157655|gb|ACI35088.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209751068|gb|ACI73841.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751070|gb|ACI73842.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751072|gb|ACI73843.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751074|gb|ACI73844.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751076|gb|ACI73845.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209914817|dbj|BAG79891.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE11]
 gi|217322118|gb|EEC30542.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354513|emb|CAV01381.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli 55989]
 gi|218363399|emb|CAR01052.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI1]
 gi|218434791|emb|CAR15723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UMN026]
 gi|238861138|gb|ACR63136.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BW2952]
 gi|242379599|emb|CAQ34421.1| formate-dependent nitrite reductase, 4Fe-4S subunit, subunit of
           nitrite reductase complex [Escherichia coli BL21(DE3)]
 gi|253326344|gb|ACT30946.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975908|gb|ACT41579.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli B str. REL606]
 gi|253980064|gb|ACT45734.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BL21(DE3)]
 gi|254595492|gb|ACT74853.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|257756831|dbj|BAI28333.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|257767187|dbj|BAI38682.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O111:H- str. 11128]
 gi|260451098|gb|ACX41520.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli DH1]
 gi|281603444|gb|ADA76428.1| putative Fe-S-cluster-containing hydrogenase components 1 [Shigella
           flexneri 2002017]
 gi|290765362|gb|ADD59323.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. CB9615]
 gi|291320830|gb|EFE60272.1| cytochrome c nitrite reductase [Escherichia coli B088]
 gi|291429626|gb|EFF02640.1| cytochrome c nitrite reductase [Escherichia coli FVEC1412]
 gi|291430295|gb|EFF03293.1| cytochrome c nitrite reductase [Escherichia coli B185]
 gi|291472057|gb|EFF14539.1| cytochrome c nitrite reductase [Escherichia coli B354]
 gi|298280574|gb|EFI22075.1| formate-dependent nitrite reductase [Escherichia coli FVEC1302]
 gi|299882331|gb|EFI90542.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           196-1]
 gi|300315756|gb|EFJ65540.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           175-1]
 gi|300358761|gb|EFJ74631.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           198-1]
 gi|300397952|gb|EFJ81490.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           69-1]
 gi|300401841|gb|EFJ85379.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           84-1]
 gi|300415776|gb|EFJ99086.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           115-1]
 gi|300453638|gb|EFK17258.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           116-1]
 gi|300461629|gb|EFK25122.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           187-1]
 gi|300522853|gb|EFK43922.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           119-7]
 gi|300529404|gb|EFK50466.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           107-1]
 gi|300841982|gb|EFK69742.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           124-1]
 gi|301076634|gb|EFK91440.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           146-1]
 gi|306907893|gb|EFN38394.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli W]
 gi|308120542|gb|EFO57804.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           145-7]
 gi|309704540|emb|CBJ03889.1| cytochrome c-type biogenesis protein [Escherichia coli ETEC H10407]
 gi|310331664|gb|EFP98920.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1827-70]
 gi|313648724|gb|EFS13164.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri 2a
           str. 2457T]
 gi|315063396|gb|ADT77723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli W]
 gi|315138627|dbj|BAJ45786.1| formate-dependent nitrite reductase 4Fe-4S subunit [Escherichia
           coli DH1]
 gi|315254754|gb|EFU34722.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           85-1]
 gi|315617447|gb|EFU98053.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           3431]
 gi|320174437|gb|EFW49581.1| NrfC protein [Shigella dysenteriae CDC 74-1112]
 gi|320183144|gb|EFW58004.1| NrfC protein [Shigella flexneri CDC 796-83]
 gi|320190799|gb|EFW65449.1| NrfC protein [Escherichia coli O157:H7 str. EC1212]
 gi|320200794|gb|EFW75380.1| NrfC protein [Escherichia coli EC4100B]
 gi|320638829|gb|EFX08475.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. G5101]
 gi|320644197|gb|EFX13262.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H- str. 493-89]
 gi|320649516|gb|EFX18040.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H- str. H 2687]
 gi|320654912|gb|EFX22873.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660418|gb|EFX27879.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665689|gb|EFX32726.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155881|gb|EFZ42049.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           EPECa14]
 gi|323164520|gb|EFZ50321.1| cytochrome c nitrite reductase, Fe-S protein [Shigella sonnei 53G]
 gi|323171496|gb|EFZ57142.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           LT-68]
 gi|323175963|gb|EFZ61555.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1180]
 gi|323182179|gb|EFZ67589.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1357]
 gi|323380540|gb|ADX52808.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           KO11]
 gi|323935563|gb|EGB31894.1| cytochrome c nitrite reductase [Escherichia coli E1520]
 gi|323940256|gb|EGB36449.1| cytochrome c nitrite reductase [Escherichia coli E482]
 gi|323946206|gb|EGB42240.1| cytochrome c nitrite reductase [Escherichia coli H120]
 gi|323960438|gb|EGB56072.1| cytochrome c nitrite reductase [Escherichia coli H489]
 gi|323965736|gb|EGB61188.1| cytochrome c nitrite reductase [Escherichia coli M863]
 gi|323969791|gb|EGB65072.1| cytochrome c nitrite reductase [Escherichia coli TA007]
 gi|323975292|gb|EGB70395.1| cytochrome c nitrite reductase [Escherichia coli TW10509]
 gi|324017129|gb|EGB86348.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           117-3]
 gi|324118645|gb|EGC12537.1| cytochrome c nitrite reductase [Escherichia coli E1167]
 gi|326341879|gb|EGD65662.1| NrfC protein [Escherichia coli O157:H7 str. 1125]
 gi|326346547|gb|EGD70281.1| NrfC protein [Escherichia coli O157:H7 str. 1044]
 gi|327250419|gb|EGE62132.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           STEC_7v]
 gi|331035790|gb|EGI08028.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H736]
 gi|331046249|gb|EGI18339.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M718]
 gi|331056795|gb|EGI28789.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA143]
 gi|331061852|gb|EGI33777.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA271]
 gi|331071666|gb|EGI43002.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H591]
 gi|332083567|gb|EGI88787.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii
           5216-82]
 gi|332084228|gb|EGI89431.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           155-74]
 gi|332087818|gb|EGI92944.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii
           3594-74]
 gi|332103208|gb|EGJ06554.1| nrfC [Shigella sp. D9]
 gi|332752191|gb|EGJ82583.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-671]
 gi|332753277|gb|EGJ83658.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           2747-71]
 gi|332764783|gb|EGJ95012.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           2930-71]
 gi|333011118|gb|EGK30532.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-272]
 gi|333012690|gb|EGK32070.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-227]
 gi|333014265|gb|EGK33621.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-304]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|325265432|ref|ZP_08132155.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
 gi|324029290|gb|EGB90582.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
          Length = 140

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M++ +T+ CI C  T C ++CPV       +    I+   C++CGVC   C   AI    
Sbjct: 1  MSFFITDKCIGC--TLCRKLCPVGAVEGNLKERHRINEKRCVECGVCGRVCKQKAILDQD 58


>gi|313887884|ref|ZP_07821563.1| ferredoxin [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846050|gb|EFR33432.1| ferredoxin [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 56

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M YV+ ++CI C    C   CPV C  EG+   +I   +CIDCG C   CPV A  P+ 
Sbjct: 1  MAYVINDSCIAC--GACQPECPVGCISEGD-IYSIDESQCIDCGSCAAVCPVGAPNPED 56


>gi|312876005|ref|ZP_07735994.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797203|gb|EFR13543.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 598

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C + CP +           I   +CI CGVC  +CP  AI
Sbjct: 544 IDKELCKGC--GICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + CP     +    + I  + C  CG+C   CP +AI    +   E
Sbjct: 528 EKRCPAGAC-KALLRIVIDKELCKGCGICAKNCPANAITGQIKKPFE 573


>gi|331650093|ref|ZP_08351166.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M605]
 gi|330908407|gb|EGH36926.1| NrfC protein [Escherichia coli AA86]
 gi|331041038|gb|EGI13195.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M605]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|302344389|ref|YP_003808918.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301641002|gb|ADK86324.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 356

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + C  C+   C++ C +     G++    I  D CI CG+C   CP +A+    +
Sbjct: 273 AVVDKDACTGCE--TCLDRCQMKAIVMGDDGLARIDLDRCIGCGLCVTTCPTEALTLQAK 330

Query: 61  PGLE 64
           P  +
Sbjct: 331 PSAQ 334


>gi|260899671|ref|ZP_05908066.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109467|gb|EFO47007.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 553

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPEDTQKFIE 247



 Score = 36.9 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 420 CTLC--MSCVAVCPTHALHTDGQSPSLKFVEQDCIQCGLCEKACP 462


>gi|260597687|ref|YP_003210258.1| formate hydrogenlyase subunit 2 [Cronobacter turicensis z3032]
 gi|260216864|emb|CBA30397.1| Formate hydrogenlyase subunit 2 [Cronobacter turicensis z3032]
          Length = 243

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C +VCPV+        + ++   C+ C +C   CP  AI+ 
Sbjct: 93  CHHCEDAPCAQVCPVNAITREAGAIQLNESLCVSCKLCGIACPFGAIEF 141


>gi|126465204|ref|YP_001040313.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA
           [Staphylothermus marinus F1]
 gi|126014027|gb|ABN69405.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA
           [Staphylothermus marinus F1]
          Length = 624

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 7   ENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C  C    CV +  CP     +G     I  + C  CG+C   CP +AI    E G  
Sbjct: 561 DKCTGC--MVCVNLLGCPAIIVPKGAKKPVILSELCAGCGLCAQVCPFNAIVL-KEKGSP 617

Query: 65  LWLK 68
            W++
Sbjct: 618 NWIE 621


>gi|7321237|emb|CAB82176.1| nitrate reductase beta-subunit [Pseudomonas sp. Ki-723]
          Length = 320

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPTCAAACPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFNWK 221


>gi|396407|gb|AAC43166.1| ORF_o223 [Escherichia coli str. K-12 substr. MG1655]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|83814420|ref|YP_446212.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
            [Salinibacter ruber DSM 13855]
 gi|294508140|ref|YP_003572198.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
            [Salinibacter ruber M8]
 gi|83755814|gb|ABC43927.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
            [Salinibacter ruber DSM 13855]
 gi|294344468|emb|CBH25246.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
            [Salinibacter ruber M8]
          Length = 1140

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9    CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
            C  C++  C  VCPV    +  +    +  + CI    C+  CP  
Sbjct: 956  CQHCENAPCESVCPVAATVHSPDGTNQMVYNRCIGTRYCQNNCPYK 1001


>gi|15668327|ref|NP_247123.1| formate dehydrogenase, iron-sulfur subunit [Methanocaldococcus
          jannaschii DSM 2661]
 gi|2833496|sp|Q57619|FER8_METJA RecName: Full=Uncharacterized ferredoxin MJ0155
 gi|1498926|gb|AAB98137.1| formate dehydrogenase, iron-sulfur subunit [Methanocaldococcus
          jannaschii DSM 2661]
          Length = 151

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C++  C E+CPVD  Y  +    +  + CI CG+C   CP+ AI 
Sbjct: 42 CMQCENAPCKEICPVDAIYLKDGIPIVDKERCIACGMCAIACPIGAIF 89


>gi|189499447|ref|YP_001958917.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
 gi|189494888|gb|ACE03436.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
          Length = 594

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ +  + C  C    C   CPVD      +      I  D C++CG+C   C  DAI
Sbjct: 536 THTIMQDTCTGCS--ICERYCPVDAITGVIKKPESWVIDHDLCVNCGMCVEVCNSDAI 591


>gi|328908342|gb|EGG28101.1| anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           sp. P08]
          Length = 161

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           TY  + +C  C+    +EVCP       ++  + +  D+C+ C  CE  CP  A
Sbjct: 106 TYYTSISCNHCEDPIYMEVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSA 159


>gi|313835413|gb|EFS73127.1| nitrate reductase, beta subunit [Propionibacterium acnes HL037PA2]
 gi|314972408|gb|EFT16505.1| nitrate reductase, beta subunit [Propionibacterium acnes HL037PA3]
          Length = 507

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPTCVSACPSGAIYKRTEDGIVLVDQDHCRGWRMCVSGCPYKKVFF 233


>gi|291280075|ref|YP_003496910.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin, iron-sulfur binding
           protein [Deferribacter desulfuricans SSM1]
 gi|290754777|dbj|BAI81154.1| molybdopterin oxidoreductase, 4Fe-4S ferredoxin, iron-sulfur
           binding protein [Deferribacter desulfuricans SSM1]
          Length = 185

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  CV VCP    Y+ E+ +  +  ++CI C  C   CP DA   + E
Sbjct: 63  CQQCENPPCVHVCPTQASYQTEDGVVLVDHNKCILCKYCMTACPYDARYVNEE 115


>gi|284924166|emb|CBG37266.1| cytochrome c-type biogenesis protein [Escherichia coli 042]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|197302881|ref|ZP_03167933.1| hypothetical protein RUMLAC_01610 [Ruminococcus lactaris ATCC
          29176]
 gi|197298118|gb|EDY32666.1| hypothetical protein RUMLAC_01610 [Ruminococcus lactaris ATCC
          29176]
          Length = 56

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+++ C+ C    C   CPV    EGE+   +  D CIDCG CE  CPV AI
Sbjct: 1  MARVISDECVKC--GTCEAECPVSAISEGEDTYVVDADSCIDCGACEAACPVGAI 53


>gi|7321239|emb|CAB82177.1| nitrate reductase beta-subunit [Pseudomonas sp. Ki-1w]
          Length = 320

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFNWK 221


>gi|15803230|ref|NP_289262.1| electron transport protein HydN [Escherichia coli O157:H7 EDL933]
 gi|25285312|pir||H85919 hypothetical protein hydN [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517158|gb|AAG57820.1|AE005499_7 involved in electron transport from formate to hydrogen, Fe-S
           centers [Escherichia coli O157:H7 str. EDL933]
          Length = 175

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|83858406|ref|ZP_00951928.1| NADH dehydrogenase subunit I [Oceanicaulis alexandrii HTCC2633]
 gi|83853229|gb|EAP91081.1| NADH dehydrogenase subunit I [Oceanicaulis alexandrii HTCC2633]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 118 V--EGPNFEFATETREEL------YYDKAKLLDNGDRWERE 150


>gi|126175973|ref|YP_001052122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999178|gb|ABN63253.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 188

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+ +  IH ++C+ C  C   CP      + E
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPYKVRFMNPE 112


>gi|314929271|gb|EFS93102.1| nitrate reductase, beta subunit [Propionibacterium acnes HL044PA1]
 gi|328908331|gb|EGG28090.1| nitrate reductase beta chain [Propionibacterium sp. P08]
          Length = 507

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPTCVSACPSGAIYKRTEDGIVLVDQDHCRGWRMCVSGCPYKKVFF 233


>gi|260461353|ref|ZP_05809601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032890|gb|EEW34153.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 990

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           T+     C+ C+   C  VCPV+   +  +   A   + CI    C   CP  
Sbjct: 804 TFFQPVPCMHCEKAPCELVCPVNATVHTHDGLNAQVYNRCIGTRYCSQNCPYK 856


>gi|260856818|ref|YP_003230709.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260869386|ref|YP_003235788.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O111:H- str. 11128]
 gi|331654190|ref|ZP_08355190.1| electron transport protein HydN [Escherichia coli M718]
 gi|257755467|dbj|BAI26969.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257765742|dbj|BAI37237.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O111:H- str. 11128]
 gi|323154924|gb|EFZ41116.1| aegA domain protein [Escherichia coli EPECa14]
 gi|323180131|gb|EFZ65683.1| protein aegA domain protein [Escherichia coli 1180]
 gi|331047572|gb|EGI19649.1| electron transport protein HydN [Escherichia coli M718]
          Length = 175

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|255527518|ref|ZP_05394386.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255508788|gb|EET85160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 195

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C + CPVD       ++ +   +CI C  C   CP+ AI    E
Sbjct: 60  CRQCEDALCAKACPVDAISTKNGYVQVEEGKCIGCKTCTVACPIGAIDMIPE 111


>gi|254445223|ref|ZP_05058699.1| 4Fe-4S binding domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259531|gb|EDY83839.1| 4Fe-4S binding domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 527

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           VT  C  C    C+  CPVD + +      +    D+CI C  C  +CP D
Sbjct: 110 VTSACHHCVEPACMIGCPVDAYEKDAVSGIVLHLDDQCIGCQYCVLKCPYD 160


>gi|147677003|ref|YP_001211218.1| iron only hydrogenase large subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273100|dbj|BAF58849.1| iron only hydrogenase large subunit, C-terminal domain
           [Pelotomaculum thermopropionicum SI]
          Length = 530

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + CILC    C+EVC  V+  Y   +   +    CI+CG C   CP  AI  + +   ++
Sbjct: 91  QKCILC--GQCLEVCKNVESVYGYYDLPVVDETICINCGQCSMACPSGAI-SERDDTKKV 147

Query: 66  WLKINSE 72
           +  +  +
Sbjct: 148 FEALADK 154


>gi|145591762|ref|YP_001153764.1| putative ATPase RIL [Pyrobaculum arsenaticum DSM 13514]
 gi|145283530|gb|ABP51112.1| ABC transporter related [Pyrobaculum arsenaticum DSM 13514]
          Length = 590

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVD 53
            V  ++C    C H +CV+ CPV+         E      I    CI CG+C  +CP +
Sbjct: 5  AVVDVDSCQPKKCGH-ECVKYCPVNKTGKVVWIDEQTKKAVISEALCIGCGICVHKCPFE 63

Query: 54 AI 55
          AI
Sbjct: 64 AI 65


>gi|158522075|ref|YP_001529945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510901|gb|ABW67868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 355

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V T+ C  C+   C++ C +       ++   +  + CI CG+C   CP  AI    +P 
Sbjct: 274 VDTDECTGCE--ACLDRCQMGAIRLNADDVAEVDLNRCIGCGLCVTTCPTQAITLVAKPE 331

Query: 63  LE 64
            E
Sbjct: 332 PE 333


>gi|146299395|ref|YP_001193986.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Flavobacterium johnsoniae UW101]
 gi|146153813|gb|ABQ04667.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Flavobacterium johnsoniae UW101]
          Length = 1019

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     +   
Sbjct: 847 CQHCNHAPCETVCPVAATSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNK--- 903

Query: 68  KINSEY 73
             NSE+
Sbjct: 904 --NSEF 907


>gi|13022069|gb|AAK11625.1|AF331719_1 [Fe] hydrogenase large subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 421

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEP 61
           +  E CI C    C E CP    +         P E  CI+CG C   CPV AI      
Sbjct: 30  IDPEKCIGCD--TCQEYCPTGAIFGDTGSAHSIPHEEICINCGQCLTHCPVGAIY----- 82

Query: 62  GLELWLKINSEYATQWPNITTKKESLP 88
            ++ W+    E + +  +   K  ++P
Sbjct: 83  EVQSWV---RELSEKIKDPEIKVIAMP 106


>gi|302871901|ref|YP_003840537.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574760|gb|ADL42551.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 598

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C + CP +           I   +CI CGVC  +CP  AI
Sbjct: 544 IDKDLCKGC--GICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + CP     +    + I  D C  CG+C   CP +AI    +   E
Sbjct: 528 EKRCPAGAC-KALLRIVIDKDLCKGCGICAKNCPANAITGQIKKPFE 573


>gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. 18P13]
          Length = 597

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C  T C  VCP        +N   I   +C+ CG C  +C   AI
Sbjct: 547 DKCKGC--TACARVCPAGAISGSVKNPHTIDKSKCLKCGACIEKCRFGAI 594


>gi|261885847|ref|ZP_06009886.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 216

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C  C    C  VCP         ++ +H   CI C +C   CP  AI  D+
Sbjct: 49  VMPNQCRQCDDAPCALVCPSSALRNENGYVEMHEQLCIGCALCVNACPYGAIHLDS 104


>gi|240137055|ref|YP_002961524.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           AM1]
 gi|240007021|gb|ACS38247.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           AM1]
          Length = 665

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 267 TGC--TRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPADALMRRL 324



 Score = 38.8 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP            LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLCL--SCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELWLK 68
           E W +
Sbjct: 565 EAWGE 569


>gi|224370438|ref|YP_002604602.1| putative anaerobic dimethyl sulfoxide reductase, chain B (DMSO
           reductase, iron-sulfur subunit) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693155|gb|ACN16438.1| putative anaerobic dimethyl sulfoxide reductase, chain B (DMSO
           reductase, iron-sulfur subunit) [Desulfobacterium
           autotrophicum HRM2]
          Length = 175

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    C EVCPV+   +   +  + +    CI CG C   CP    +   +  ++ 
Sbjct: 66  SCLHCSDPACAEVCPVEAISKQTADGRVRVDTTLCIGCGACAEACPFGVPQFGEDQVMQK 125


>gi|218528461|ref|YP_002419277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|218520764|gb|ACK81349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 665

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 267 TGC--TRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPADALMRRL 324



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP            LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLCL--SCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELWLK 68
           E W +
Sbjct: 565 EAWAE 569


>gi|297619597|ref|YP_003707702.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus voltae A3]
 gi|297378574|gb|ADI36729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus voltae A3]
          Length = 139

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +   C+ C+   C++VCP +   +  + + +  D+CI C +C   CP+ AI+ D
Sbjct: 31 IPIRCMHCESAPCIQVCPENALKKVGDRVILDNDKCIGCSLCTEVCPIGAIRID 84


>gi|220928814|ref|YP_002505723.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Clostridium
           cellulolyticum H10]
 gi|219999142|gb|ACL75743.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium cellulolyticum H10]
          Length = 598

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  NC  CK       CP     EG   + I P  C  CG+C   CP DAI  +   
Sbjct: 542 YSIKANCKDCKKCITEIGCPAISVIEG--KVRIEPSLCYGCGLCTNVCPFDAIGGEENE 598


>gi|7321241|emb|CAB82178.1| nitrate reductase beta-subunit [Pseudomonas sp. Ki-1z]
          Length = 328

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFNWK 221


>gi|83590723|ref|YP_430732.1| sigma-54 dependent trancsriptional regulator [Moorella
          thermoacetica ATCC 39073]
 gi|83573637|gb|ABC20189.1| sigma54 specific transcriptional regulator with PAS sensor, Fis
          family [Moorella thermoacetica ATCC 39073]
          Length = 752

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T  C  C    CV  CPV      +    +  + CI CG+C   C   A
Sbjct: 9  TGRCRQCY--SCVRNCPVKAIRINKGQAEVIAERCISCGMCLAFCSQGA 55


>gi|84686443|ref|ZP_01014337.1| NADH dehydrogenase subunit I [Maritimibacter alkaliphilus HTCC2654]
 gi|84665626|gb|EAQ12102.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2654]
          Length = 164

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKDKLLDNGERWEAE 152


>gi|327399174|ref|YP_004340043.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Hippea
           maritima DSM 10411]
 gi|327181803|gb|AEA33984.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Hippea
           maritima DSM 10411]
          Length = 590

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 4   VVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           VV + CI CK   C+   CP       +N   I    C  C VC+  CP
Sbjct: 535 VVADKCIGCK--RCLRIACP--AIDFKDNKAVIDEVLCTGCEVCKNVCP 579


>gi|307297326|ref|ZP_07577132.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916586|gb|EFN46968.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 283

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  + C  C    C EVC        +  + +    C  CG+C   CP  AI
Sbjct: 62  PVIDNKKCTRC--GKCAEVCQFGALSVFQTGVMVFESLCHGCGLCTFICPEKAI 113


>gi|291556935|emb|CBL34052.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium
           siraeum V10Sc8a]
          Length = 275

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T  CI CK   C + CP       +N   I  D+C  CG C   CP   +   T    
Sbjct: 210 VCTNGCIGCK--ICEKKCPHGAVIVADNHAVIDYDKCTSCGTCVSACPRKCLVNITCTHS 267

Query: 64  EL 65
           E 
Sbjct: 268 EK 269



 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  + DC  VC  D     +    + P +C  CG C   CP   I    E
Sbjct: 140 GCDGYGDCAAVCSNDAITITDGVAVVDPAKCGGCGKCVTACPNHLIFLRKE 190


>gi|284922834|emb|CBG35923.1| putative oxidoreductase, 4Fe-4S subunit [Escherichia coli 042]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|284042953|ref|YP_003393293.1| nitrate reductase subunit beta [Conexibacter woesei DSM 14684]
 gi|283947174|gb|ADB49918.1| nitrate reductase, beta subunit [Conexibacter woesei DSM 14684]
          Length = 519

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  
Sbjct: 182 CEHCMNPSCVASCPSGAMYKREEDGIVLVDQERCRGWRYCVSGCPYKKVYF 232


>gi|282859903|ref|ZP_06268991.1| 4Fe-4S binding domain protein [Prevotella bivia JCVIHMP010]
 gi|282587306|gb|EFB92523.1| 4Fe-4S binding domain protein [Prevotella bivia JCVIHMP010]
          Length = 254

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y V + C  C    C + CP+         L +    C  C  C   CP++AI  +   G
Sbjct: 187 YKVNDTCTHC--GLCAKACPMQNINYDNGGLPVWHHNCAACLACYHACPINAISYNFTKG 244

Query: 63  LELW 66
              +
Sbjct: 245 KGQY 248


>gi|313117037|ref|YP_004038161.1| respiratory nitrate reductase beta subunit [Halogeometricum
           borinquense DSM 11551]
 gi|312294989|gb|ADQ69025.1| respiratory nitrate reductase beta subunit [Halogeometricum
           borinquense DSM 11551]
          Length = 353

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C H  CVE CP    Y+ E    + I  + C     C   CP   +  
Sbjct: 151 CNHCTHPSCVEACPRKAIYKREEDGIVLIDQERCRGYRYCVEGCPYKKVYY 201


>gi|215488185|ref|YP_002330616.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312964856|ref|ZP_07779096.1| hydrogenase-4 component A [Escherichia coli 2362-75]
 gi|215266257|emb|CAS10686.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312290412|gb|EFR18292.1| hydrogenase-4 component A [Escherichia coli 2362-75]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|254454656|ref|ZP_05068093.1| NADH-quinone oxidoreductase chain i [Octadecabacter antarcticus
           238]
 gi|198269062|gb|EDY93332.1| NADH-quinone oxidoreductase chain i [Octadecabacter antarcticus
           238]
          Length = 164

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFSTETREEL------YYDKEKLLDNGDRWEAE 152


>gi|297583591|ref|YP_003699371.1| nitrate reductase subunit beta [Bacillus selenitireducens MLS10]
 gi|297142048|gb|ADH98805.1| nitrate reductase, beta subunit [Bacillus selenitireducens MLS10]
          Length = 494

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + E     
Sbjct: 181 CEHCINAPCVASCPSGAIYKRDEDGIVLVDQEACRGWRHCITSCPYKKVYFNWETNKAE 239


>gi|78222241|ref|YP_383988.1| respiratory nitrate reductase beta subunit [Geobacter
           metallireducens GS-15]
 gi|78193496|gb|ABB31263.1| respiratory nitrate reductase beta subunit [Geobacter
           metallireducens GS-15]
          Length = 495

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + +  ++C    +C   CP   +  + 
Sbjct: 184 CNHCANPGCVAACPSGAIYKRGEDGIVLVSQEKCRGWRMCVSGCPYKKVYYNW 236


>gi|187733852|ref|YP_001882767.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii CDC
           3083-94]
 gi|187430844|gb|ACD10118.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii CDC
           3083-94]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|332299925|ref|YP_004441846.1| Ferredoxin hydrogenase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176988|gb|AEE12678.1| Ferredoxin hydrogenase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C   CP  C  ++      I  + CI CG C   CP  AI     P
Sbjct: 115 YEVSNLCRGCVSRACSSNCPKSCISFKKNGQAQIDHEICISCGQCHKNCPYHAIVYIPVP 174

Query: 62  GLE 64
             E
Sbjct: 175 CEE 177



 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  E CI C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 148 IDHEICISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCLN 207

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 208 ACPFGAIF 215


>gi|315659403|ref|ZP_07912266.1| respiratory nitrate reductase, beta subunit [Staphylococcus
           lugdunensis M23590]
 gi|315495522|gb|EFU83854.1| respiratory nitrate reductase, beta subunit [Staphylococcus
           lugdunensis M23590]
          Length = 517

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|296110007|ref|YP_003616956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295434821|gb|ADG13992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 136

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          V   C  C+   C+  CP +        + I  ++CI CG+C   CP  AIK 
Sbjct: 28 VPIRCYHCEGNPCLLACPKEAIKRINGKVVIIEEKCIGCGLCALACPFGAIKM 80



 Score = 37.3 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ E CI C    C   CP          +       ++  +C   CP  AI    E   
Sbjct: 58  IIEEKCIGC--GLCALACPFGAIKMSRIAIKCDGCYSLEKELCSSVCPTGAISSLDEINE 115

Query: 64  EL 65
           + 
Sbjct: 116 KK 117


>gi|300770051|ref|ZP_07079930.1| molybdopterin oxidoreductase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762527|gb|EFK59344.1| molybdopterin oxidoreductase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 1001

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  E    +  + C     C   CP    + +         
Sbjct: 828 CQHCAHAPCETVCPVLATVHSSEGLNHMAYNRCFGTRYCANNCPYKVRRFNWFNYWNDSR 887

Query: 68  K---INSEYAT--QWPNITTK 83
               +N+E+      P++T++
Sbjct: 888 FDNYLNNEFTQLVLNPDVTSR 908


>gi|257065432|ref|YP_003145104.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793085|gb|ACV23755.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 192

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C  VCP    ++ +  L     + CI C  C   CP  A + 
Sbjct: 58  CNHCDNPACTAVCPTGAMFKNDEGLVLHDDNVCIGCQSCVNACPYSAPQY 107


>gi|227538504|ref|ZP_03968553.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241690|gb|EEI91705.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 882

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  E    +  + C     C   CP    + +         
Sbjct: 709 CQHCAHAPCETVCPVLATVHSSEGLNHMAYNRCFGTRYCANNCPYKVRRFNWFNYWNDSR 768

Query: 68  K---INSEYAT--QWPNITTK 83
               +N+E+      P++T++
Sbjct: 769 FDNYLNNEFTQLVLNPDVTSR 789


>gi|237653299|ref|YP_002889613.1| nitrate reductase subunit beta [Thauera sp. MZ1T]
 gi|237624546|gb|ACR01236.1| nitrate reductase, beta subunit [Thauera sp. MZ1T]
          Length = 523

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+ E    +    D C    +C   CP   +  + E
Sbjct: 182 CNHCINPACVASCPSGALYKREEDGIVLADQDRCRGWRMCISGCPYKKVFFNWE 235


>gi|225012175|ref|ZP_03702612.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Flavobacteria bacterium MS024-2A]
 gi|225003730|gb|EEG41703.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Flavobacteria bacterium MS024-2A]
          Length = 1035

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     +   
Sbjct: 862 CQHCNHAPCETVCPVAASSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNK--- 918

Query: 68  KINSEY 73
             N E+
Sbjct: 919 --NDEF 922


>gi|170765926|ref|ZP_02900737.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
 gi|170125072|gb|EDS94003.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
          Length = 175

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|167746910|ref|ZP_02419037.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
 gi|167653870|gb|EDR97999.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
          Length = 304

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            CI C H  C++VCP       ++ + +H ++CI C  C  ECP  A+K + E
Sbjct: 60  KCIGCHH--CIDVCPSKAISLIQDHIRVHAEKCIGCRQCVLECPGKALKSEGE 110


>gi|297619598|ref|YP_003707703.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378575|gb|ADI36730.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 173

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    C E+CPV+        + ++ + CI CG+C   CP  AI  + +   +
Sbjct: 45  CQHCASAPCGEICPVNAIDVNNGVVHLNEELCIGCGLCALACPFGAIFINEKTAHK 100


>gi|150020029|ref|YP_001305383.1| dihydroorotate dehydrogenase family protein [Thermosipho
           melanesiensis BI429]
 gi|149792550|gb|ABR29998.1| dihydroorotate dehydrogenase family protein [Thermosipho
           melanesiensis BI429]
          Length = 360

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C LC    C +VCP       +  + I+  +C  CG+CE  CP  +I
Sbjct: 311 EKCTLC--GICEKVCPYFAIKIDK-KVKINTYKCFGCGLCESRCPTKSI 356


>gi|89893992|ref|YP_517479.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219668373|ref|YP_002458808.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89333440|dbj|BAE83035.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219538633|gb|ACL20372.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 191

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTE 60
           Y  +  C  C +  CV+ CP D  Y  ++    H  ++CI C  C   CP    +   E
Sbjct: 51  YHYSSACNHCSNAKCVKGCPADALYYADDGTVQHEKNKCIGCRYCTWNCPYGVPQFIEE 109


>gi|15832823|ref|NP_311596.1| electron transport protein HydN [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130620|ref|NP_417193.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|82545212|ref|YP_409159.1| electron transport protein HydN [Shigella boydii Sb227]
 gi|89109500|ref|AP_003280.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|110642833|ref|YP_670563.1| electron transport protein HydN [Escherichia coli 536]
 gi|110806662|ref|YP_690182.1| electron transport protein HydN [Shigella flexneri 5 str. 8401]
 gi|117624944|ref|YP_853932.1| electron transport protein HydN [Escherichia coli APEC O1]
 gi|157155890|ref|YP_001464021.1| electron transport protein HydN [Escherichia coli E24377A]
 gi|157162159|ref|YP_001459477.1| electron transport protein HydN [Escherichia coli HS]
 gi|168749963|ref|ZP_02774985.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755457|ref|ZP_02780464.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762889|ref|ZP_02787896.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768803|ref|ZP_02793810.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774756|ref|ZP_02799763.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778694|ref|ZP_02803701.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787967|ref|ZP_02812974.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC869]
 gi|168800207|ref|ZP_02825214.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC508]
 gi|170019041|ref|YP_001723995.1| electron transport protein HydN [Escherichia coli ATCC 8739]
 gi|170082289|ref|YP_001731609.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170682992|ref|YP_001744860.1| electron transport protein HydN [Escherichia coli SMS-3-5]
 gi|187730815|ref|YP_001881539.1| electron transport protein HydN [Shigella boydii CDC 3083-94]
 gi|188496192|ref|ZP_03003462.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
 gi|191166802|ref|ZP_03028628.1| 4Fe-4S binding domain protein [Escherichia coli B7A]
 gi|191171388|ref|ZP_03032937.1| 4Fe-4S binding domain protein [Escherichia coli F11]
 gi|193065052|ref|ZP_03046127.1| 4Fe-4S binding domain protein [Escherichia coli E22]
 gi|193069647|ref|ZP_03050599.1| 4Fe-4S binding domain protein [Escherichia coli E110019]
 gi|194427882|ref|ZP_03060428.1| 4Fe-4S binding domain protein [Escherichia coli B171]
 gi|194438980|ref|ZP_03071064.1| 4Fe-4S binding domain protein [Escherichia coli 101-1]
 gi|195938462|ref|ZP_03083844.1| electron transport protein HydN [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809271|ref|ZP_03251608.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814231|ref|ZP_03255560.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821974|ref|ZP_03262294.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397141|ref|YP_002272175.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920152|ref|YP_002294236.1| electron transport protein HydN [Escherichia coli SE11]
 gi|215488028|ref|YP_002330459.1| electron transport protein HydN [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326848|ref|ZP_03442931.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547779|ref|YP_002381570.1| electron transport protein HydN [Escherichia fergusonii ATCC 35469]
 gi|218555255|ref|YP_002388168.1| electron transport protein HydN [Escherichia coli IAI1]
 gi|218559701|ref|YP_002392614.1| electron transport protein HydN [Escherichia coli S88]
 gi|218690835|ref|YP_002399047.1| electron transport protein HydN [Escherichia coli ED1a]
 gi|218696304|ref|YP_002403971.1| electron transport protein HydN [Escherichia coli 55989]
 gi|218706207|ref|YP_002413726.1| electron transport protein HydN [Escherichia coli UMN026]
 gi|238901850|ref|YP_002927646.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli BW2952]
 gi|253772432|ref|YP_003035263.1| electron transporter HydN [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162644|ref|YP_003045752.1| electron transport protein HydN [Escherichia coli B str. REL606]
 gi|254794653|ref|YP_003079490.1| electron transport protein HydN [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019510|ref|ZP_05433375.1| electron transport protein HydN [Shigella sp. D9]
 gi|256024780|ref|ZP_05438645.1| electron transport protein HydN [Escherichia sp. 4_1_40B]
 gi|260845355|ref|YP_003223133.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|261226007|ref|ZP_05940288.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256735|ref|ZP_05949268.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O157:H7 str. FRIK966]
 gi|293406204|ref|ZP_06650130.1| electron transporter HydN [Escherichia coli FVEC1412]
 gi|293412068|ref|ZP_06654791.1| electron transporter HydN [Escherichia coli B354]
 gi|293415962|ref|ZP_06658602.1| electron transporter HydN [Escherichia coli B185]
 gi|293449026|ref|ZP_06663447.1| electron transporter HydN [Escherichia coli B088]
 gi|298381941|ref|ZP_06991538.1| electron transporter HydN [Escherichia coli FVEC1302]
 gi|300919256|ref|ZP_07135778.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300930569|ref|ZP_07145962.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300947011|ref|ZP_07161236.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301027406|ref|ZP_07190744.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301645309|ref|ZP_07245258.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|306812409|ref|ZP_07446607.1| electron transport protein HydN [Escherichia coli NC101]
 gi|307139400|ref|ZP_07498756.1| electron transport protein HydN [Escherichia coli H736]
 gi|307314402|ref|ZP_07594007.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|312965263|ref|ZP_07779498.1| aegA domain protein [Escherichia coli 2362-75]
 gi|312973078|ref|ZP_07787251.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|331643396|ref|ZP_08344527.1| electron transport protein HydN [Escherichia coli H736]
 gi|331648431|ref|ZP_08349519.1| electron transport protein HydN [Escherichia coli M605]
 gi|331658818|ref|ZP_08359760.1| electron transport protein HydN [Escherichia coli TA206]
 gi|331664264|ref|ZP_08365170.1| electron transport protein HydN [Escherichia coli TA143]
 gi|331669445|ref|ZP_08370291.1| electron transport protein HydN [Escherichia coli TA271]
 gi|331678685|ref|ZP_08379359.1| electron transport protein HydN [Escherichia coli H591]
 gi|331684325|ref|ZP_08384917.1| electron transport protein HydN [Escherichia coli H299]
 gi|77417745|sp|P0AAK6|HYDN_ECO57 RecName: Full=Electron transport protein hydN
 gi|77417746|sp|P0AAK5|HYDN_ECOL6 RecName: Full=Electron transport protein hydN
 gi|77417747|sp|P0AAK4|HYDN_ECOLI RecName: Full=Electron transport protein hydN
 gi|216575|dbj|BAA03314.1| 4Fe-4S iron-sulfer protein, putative [Escherichia coli]
 gi|882606|gb|AAA69223.1| 4Fe-4S iron-sulfur protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13363040|dbj|BAB36992.1| electron transport protein HydN [Escherichia coli O157:H7 str.
           Sakai]
 gi|81246623|gb|ABB67331.1| HydN [Shigella boydii Sb227]
 gi|85675534|dbj|BAE76790.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|110344425|gb|ABG70662.1| putative electron-transport protein [Escherichia coli 536]
 gi|110616210|gb|ABF04877.1| Electron transport protein hydN [Shigella flexneri 5 str. 8401]
 gi|115514068|gb|ABJ02143.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli APEC O1]
 gi|157067839|gb|ABV07094.1| 4Fe-4S binding domain protein [Escherichia coli HS]
 gi|157077920|gb|ABV17628.1| 4Fe-4S binding domain protein [Escherichia coli E24377A]
 gi|169753969|gb|ACA76668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|169890124|gb|ACB03831.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170520710|gb|ACB18888.1| 4Fe-4S binding domain protein [Escherichia coli SMS-3-5]
 gi|187427807|gb|ACD07081.1| 4Fe-4S binding domain protein [Shigella boydii CDC 3083-94]
 gi|187769622|gb|EDU33466.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015768|gb|EDU53890.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188491391|gb|EDU66494.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
 gi|189003161|gb|EDU72147.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357299|gb|EDU75718.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362067|gb|EDU80486.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366905|gb|EDU85321.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372111|gb|EDU90527.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC869]
 gi|189377524|gb|EDU95940.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC508]
 gi|190903173|gb|EDV62896.1| 4Fe-4S binding domain protein [Escherichia coli B7A]
 gi|190908322|gb|EDV67912.1| 4Fe-4S binding domain protein [Escherichia coli F11]
 gi|192927349|gb|EDV81968.1| 4Fe-4S binding domain protein [Escherichia coli E22]
 gi|192957010|gb|EDV87461.1| 4Fe-4S binding domain protein [Escherichia coli E110019]
 gi|194414115|gb|EDX30391.1| 4Fe-4S binding domain protein [Escherichia coli B171]
 gi|194422101|gb|EDX38104.1| 4Fe-4S binding domain protein [Escherichia coli 101-1]
 gi|208729072|gb|EDZ78673.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735508|gb|EDZ84195.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208742097|gb|EDZ89779.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158541|gb|ACI35974.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761968|gb|ACI79296.1| electron transport protein HydN [Escherichia coli]
 gi|209761970|gb|ACI79297.1| electron transport protein HydN [Escherichia coli]
 gi|209761972|gb|ACI79298.1| electron transport protein HydN [Escherichia coli]
 gi|209761976|gb|ACI79300.1| electron transport protein HydN [Escherichia coli]
 gi|209913411|dbj|BAG78485.1| electron transport protein [Escherichia coli SE11]
 gi|215266100|emb|CAS10525.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217319215|gb|EEC27640.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353036|emb|CAU98861.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli 55989]
 gi|218355320|emb|CAQ87927.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           fergusonii ATCC 35469]
 gi|218362023|emb|CAQ99630.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli IAI1]
 gi|218366470|emb|CAR04222.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli S88]
 gi|218428399|emb|CAR09325.2| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli ED1a]
 gi|218433304|emb|CAR14204.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli UMN026]
 gi|222034406|emb|CAP77148.1| electron transport protein hydN [Escherichia coli LF82]
 gi|238861128|gb|ACR63126.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli BW2952]
 gi|242378270|emb|CAQ33045.1| putative electron transport protein HydN [Escherichia coli
           BL21(DE3)]
 gi|253323476|gb|ACT28078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974545|gb|ACT40216.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli B str. REL606]
 gi|253978712|gb|ACT44382.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli BL21(DE3)]
 gi|254594053|gb|ACT73414.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|257760502|dbj|BAI31999.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|260448237|gb|ACX38659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|281179717|dbj|BAI56047.1| electron transport protein [Escherichia coli SE15]
 gi|291322116|gb|EFE61545.1| electron transporter HydN [Escherichia coli B088]
 gi|291426210|gb|EFE99242.1| electron transporter HydN [Escherichia coli FVEC1412]
 gi|291432151|gb|EFF05133.1| electron transporter HydN [Escherichia coli B185]
 gi|291468839|gb|EFF11330.1| electron transporter HydN [Escherichia coli B354]
 gi|294489974|gb|ADE88730.1| 4Fe-4S binding domain protein [Escherichia coli IHE3034]
 gi|298277081|gb|EFI18597.1| electron transporter HydN [Escherichia coli FVEC1302]
 gi|299879300|gb|EFI87511.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300413653|gb|EFJ96963.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300453352|gb|EFK16972.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300461561|gb|EFK25054.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|301076402|gb|EFK91208.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|305854447|gb|EFM54885.1| electron transport protein HydN [Escherichia coli NC101]
 gi|306905970|gb|EFN36491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|307625718|gb|ADN70022.1| electron transport protein HydN [Escherichia coli UM146]
 gi|309703072|emb|CBJ02404.1| electron transport protein [Escherichia coli ETEC H10407]
 gi|310333020|gb|EFQ00234.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|312290099|gb|EFR17984.1| aegA domain protein [Escherichia coli 2362-75]
 gi|312947241|gb|ADR28068.1| electron transport protein HydN [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315061989|gb|ADT76316.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli W]
 gi|315137320|dbj|BAJ44479.1| electron transporter hydN [Escherichia coli DH1]
 gi|315615099|gb|EFU95736.1| hydrogenase-4 component A [Escherichia coli 3431]
 gi|320173435|gb|EFW48634.1| Electron transport protein HydN [Shigella dysenteriae CDC 74-1112]
 gi|320180866|gb|EFW55789.1| Electron transport protein HydN [Shigella boydii ATCC 9905]
 gi|320186499|gb|EFW61227.1| Electron transport protein HydN [Shigella flexneri CDC 796-83]
 gi|320189045|gb|EFW63704.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194847|gb|EFW69476.1| Electron transport protein HydN [Escherichia coli WV_060327]
 gi|320202359|gb|EFW76929.1| Electron transport protein HydN [Escherichia coli EC4100B]
 gi|320640356|gb|EFX09895.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320645903|gb|EFX14884.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651203|gb|EFX19638.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320656753|gb|EFX24641.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320667347|gb|EFX34305.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323159862|gb|EFZ45833.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323167114|gb|EFZ52832.1| hydrogenase-4 component A [Shigella sonnei 53G]
 gi|323173004|gb|EFZ58635.1| hydrogenase-4 component A [Escherichia coli LT-68]
 gi|323188875|gb|EFZ74160.1| hydrogenase-4 component A [Escherichia coli RN587/1]
 gi|323935732|gb|EGB32046.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941457|gb|EGB37640.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323946409|gb|EGB42437.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|323951069|gb|EGB46945.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957077|gb|EGB52802.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
 gi|323960628|gb|EGB56254.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323966858|gb|EGB62287.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|323971559|gb|EGB66792.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|323978679|gb|EGB73761.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
 gi|324017065|gb|EGB86284.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|324111337|gb|EGC05319.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
 gi|324119962|gb|EGC13840.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|326339216|gb|EGD63031.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           1044]
 gi|326342901|gb|EGD66669.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           1125]
 gi|327251432|gb|EGE63118.1| protein aegA domain protein [Escherichia coli STEC_7v]
 gi|330908744|gb|EGH37258.1| electron transport protein HydN [Escherichia coli AA86]
 gi|331036867|gb|EGI09091.1| electron transport protein HydN [Escherichia coli H736]
 gi|331042178|gb|EGI14320.1| electron transport protein HydN [Escherichia coli M605]
 gi|331053400|gb|EGI25429.1| electron transport protein HydN [Escherichia coli TA206]
 gi|331058195|gb|EGI30176.1| electron transport protein HydN [Escherichia coli TA143]
 gi|331063113|gb|EGI35026.1| electron transport protein HydN [Escherichia coli TA271]
 gi|331073515|gb|EGI44836.1| electron transport protein HydN [Escherichia coli H591]
 gi|331077940|gb|EGI49146.1| electron transport protein HydN [Escherichia coli H299]
 gi|332087432|gb|EGI92560.1| hydrogenase-4 component A [Shigella boydii 5216-82]
 gi|332092187|gb|EGI97265.1| hydrogenase-4 component A [Shigella boydii 3594-74]
 gi|333001052|gb|EGK20622.1| hydrogenase-4 component A [Shigella flexneri K-272]
 gi|333015445|gb|EGK34784.1| hydrogenase-4 component A [Shigella flexneri K-227]
          Length = 175

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|332704639|ref|ZP_08424727.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554788|gb|EGJ51832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 185

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C +  C++ C      + E    + I   +C   G C   CP  AI+ D
Sbjct: 65  PCQHCNNAACIKACTSGAISKDEQTGIVRIDRGKCQGSGDCLKACPYGAIQFD 117


>gi|323270990|gb|EGA54422.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 138

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 10 ILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + ++
Sbjct: 1  NHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNS 51


>gi|300924342|ref|ZP_07140319.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           182-1]
 gi|301330549|ref|ZP_07223159.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           78-1]
 gi|300419432|gb|EFK02743.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           182-1]
 gi|300843501|gb|EFK71261.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           78-1]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|294053559|ref|YP_003547217.1| Fe-S-cluster-containing hydrogenase components 1- like protein
           [Coraliomargarita akajimensis DSM 45221]
 gi|293612892|gb|ADE53047.1| Fe-S-cluster-containing hydrogenase components 1- like protein
           [Coraliomargarita akajimensis DSM 45221]
          Length = 1131

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           C  C++  C  VCPV+     +  L  +  + C+    C   C   
Sbjct: 901 CQHCENAPCESVCPVNATVHDKQGLNTMAYNRCVGTRYCANNCAYK 946


>gi|289523694|ref|ZP_06440548.1| iron-sulfur cluster-binding/ATPase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503386|gb|EFD24550.1| iron-sulfur cluster-binding/ATPase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 297

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C EVC         + + + P+ C  CG C   CP  AI
Sbjct: 70  IDADRCNHC--GRCAEVCAYHAIASLPSKVIVFPELCHGCGACSYLCPESAI 119


>gi|227888249|ref|ZP_04006054.1| electron transport protein HydN [Escherichia coli 83972]
 gi|227834518|gb|EEJ44984.1| electron transport protein HydN [Escherichia coli 83972]
 gi|307554687|gb|ADN47462.1| electron transport protein HydN [Escherichia coli ABU 83972]
          Length = 175

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|227503750|ref|ZP_03933799.1| possible formate dehydrogenase beta subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199574|gb|EEI79622.1| possible formate dehydrogenase beta subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 352

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 122 SDVCKHCTNAGCLDVCPTGALFRSEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDD 177


>gi|168243690|ref|ZP_02668622.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194450668|ref|YP_002048269.1| cytochrome c nitrite reductase Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|200387438|ref|ZP_03214050.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|194408972|gb|ACF69191.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|199604536|gb|EDZ03081.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205337307|gb|EDZ24071.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF
           [Desulfatibacillum alkenivorans AK-01]
          Length = 633

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +  + C  C    C + CP +    E +    I  D CI CG+CE  C  +A+
Sbjct: 577 TYSIDPDACTGC--GACAKQCPNNAITGEKKEPHTIDTDACIRCGICEETCKFNAV 630



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CP     +     +I PD C  CG C  +CP +AI  + +   
Sbjct: 567 CPAGVC-KDLITYSIDPDACTGCGACAKQCPNNAITGEKKEPH 608


>gi|163786547|ref|ZP_02180995.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacteriales bacterium ALC-1]
 gi|159878407|gb|EDP72463.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacteriales bacterium ALC-1]
          Length = 1085

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     +   
Sbjct: 912 CQHCNHAPCETVCPVAATSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNK--- 968

Query: 68  KINSEY 73
             N E+
Sbjct: 969 --NDEF 972


>gi|153811524|ref|ZP_01964192.1| hypothetical protein RUMOBE_01916 [Ruminococcus obeum ATCC 29174]
 gi|149832265|gb|EDM87350.1| hypothetical protein RUMOBE_01916 [Ruminococcus obeum ATCC 29174]
          Length = 204

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + + CI CK   C  VCP  C       + I+ + C+ CG C   CP   I
Sbjct: 148 YFIGKECIGCKL--CCSVCPQKCIDISSVPVTINQNHCLHCGRCAEICPKQCI 198


>gi|193067862|ref|ZP_03048828.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E110019]
 gi|192958837|gb|EDV89274.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E110019]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|193063017|ref|ZP_03044109.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli E22]
 gi|194426867|ref|ZP_03059420.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           B171]
 gi|260846866|ref|YP_003224644.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|192931276|gb|EDV83878.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli E22]
 gi|194415203|gb|EDX31472.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           B171]
 gi|257762013|dbj|BAI33510.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|323162159|gb|EFZ48024.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E128010]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|116749579|ref|YP_846266.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116698643|gb|ABK17831.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1013

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
              V  + C  C+   CVE CP       E E    ++   C  CG C   CP +A+    
Sbjct: 940  AVVEKDRCSGCR--ACVECCPFGAVSYLEREGRCEVNQALCKGCGTCASACPSEAVSLMG 997

Query: 60   EPGLELWLKINSEYAT 75
                +++ +I+   + 
Sbjct: 998  FSNPQIYRQIDEALSA 1013



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECID-- 42
           Y+  + CI C    C + CP                  V          AI  + C+   
Sbjct: 106 YIDAKKCIAC--GVCAQKCPRKVPDAFNLGLNRRKAAYVKYPQAVPLKYAIDREHCLYFE 163

Query: 43  ---CGVCEPECPVDAIKPDTEPGL 63
              C  CE  CP  A+  + E   
Sbjct: 164 KGKCRACEKFCPAGAVNFEDEDRD 187


>gi|320195003|gb|EFW69632.1| putative oxidoreductase, Fe-S subunit [Escherichia coli WV_060327]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|312793480|ref|YP_004026403.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180620|gb|ADQ40790.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 598

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C + CP +           I   +CI CGVC  +CP  AI
Sbjct: 544 IDKELCKGC--GICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + CP     +    + I  + C  CG+C   CP +AI    +   E
Sbjct: 528 EKRCPAGAC-KALLRIVIDKELCKGCGICAKNCPANAITGQIKKPFE 573


>gi|307266193|ref|ZP_07547736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918797|gb|EFN49028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 126

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI CK+  C+ VCP          + I  ++C+ CG+C   CP   I
Sbjct: 50 CIQCKNAVCIRVCPSKAIKRQNGIVKIDKEKCVGCGICAQYCPQSVI 96


>gi|283787055|ref|YP_003366920.1| cytochrome c-type biogenesis protein [Citrobacter rodentium ICC168]
 gi|282950509|emb|CBG90174.1| cytochrome c-type biogenesis protein [Citrobacter rodentium ICC168]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    Y       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDRAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPYR 138


>gi|258625037|ref|ZP_05719958.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603]
 gi|258582670|gb|EEW07498.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603]
          Length = 553

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPTDTQKFIE 247



 Score = 38.8 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVD 53
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQ 464


>gi|256826547|ref|YP_003150506.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582690|gb|ACU93824.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 177

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            C  C    C  VCP +  Y  E     I  + CI C  C   CP  A+
Sbjct: 56  ACRHCVDAPCAAVCPTEALYREEGGRVAIREENCIGCRNCVMACPYGAV 104


>gi|222099619|ref|YP_002534187.1| Iron-sulfur cluster-binding protein [Thermotoga neapolitana DSM
           4359]
 gi|221572009|gb|ACM22821.1| Iron-sulfur cluster-binding protein [Thermotoga neapolitana DSM
           4359]
          Length = 310

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + T  C+ C+   C E CP            I   +CI C VC   CP DAI
Sbjct: 255 IDTGKCVKCRL--CEERCPASAIDISSQR--IDYQKCIRCYVCHEVCPHDAI 302


>gi|222529289|ref|YP_002573171.1| NADH dehydrogenase [Caldicellulosiruptor bescii DSM 6725]
 gi|312622465|ref|YP_004024078.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456136|gb|ACM60398.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor bescii DSM 6725]
 gi|312202932|gb|ADQ46259.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 598

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C + CP +           I   +CI CGVC  +CP  AI
Sbjct: 544 IDKDLCKGC--GICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + CP     +    + I  D C  CG+C   CP +AI    +   E
Sbjct: 528 EKRCPAGAC-KALLRIVIDKDLCKGCGICAKNCPANAITGQIKKPFE 573


>gi|150024478|ref|YP_001295304.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacterium psychrophilum JIP02/86]
 gi|149771019|emb|CAL42486.1| Probable molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1009

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLE 64
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +        E
Sbjct: 840 CQHCNHAPCETVCPVAATSHSRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNGNDE 899

Query: 65  LWLKINSEY 73
               +N + 
Sbjct: 900 FDYHMNDDL 908


>gi|167947032|ref|ZP_02534106.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Endoriftia
           persephone 'Hot96_1+Hot96_2']
 gi|110589202|gb|ABG77110.1| heterodisulfide reductase subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 209

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    CV+ CP +     +    ++   C  CG C   C   AI       L++   
Sbjct: 145 CTGC--QMCVDACPFEAIDLVDGKARVNEVLCEGCGSCAGVCVRAAIDVKNVTQLQIHEM 202

Query: 69  INSEYAT 75
           I++  A 
Sbjct: 203 ISAIMAA 209


>gi|56962490|ref|YP_174216.1| respiratory nitrate reductase beta chain [Bacillus clausii KSM-K16]
 gi|56908728|dbj|BAD63255.1| respiratory nitrate reductase beta chain [Bacillus clausii KSM-K16]
          Length = 511

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 234

Query: 59  TEPGLEL 65
            +     
Sbjct: 235 WKTNKAE 241


>gi|332344593|gb|AEE57927.1| hydrogenase-4 component A [Escherichia coli UMNK88]
          Length = 175

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|323698725|ref|ZP_08110637.1| iron-sulfur binding protein [Desulfovibrio sp. ND132]
 gi|323458657|gb|EGB14522.1| iron-sulfur binding protein [Desulfovibrio desulfuricans ND132]
          Length = 149

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           NC  CK  +CV  CP    Y+ E+ L  +   +C  C  C   CP      + 
Sbjct: 59  NCRHCKKPECVAACPTGAMYKREDGLVLVDMAKCDGCKACIEACPWTVPVFND 111


>gi|291530149|emb|CBK95734.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium
           siraeum 70/3]
          Length = 275

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T  CI CK   C + CP       +N   I  D+C  CG C   CP   +   T    
Sbjct: 210 VCTNGCIGCK--ICEKKCPHGAVIVADNHAVIDYDKCTSCGTCVSACPRKCLVNITCTHS 267

Query: 64  EL 65
           E 
Sbjct: 268 EK 269



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  + DC  VC  D     +    + P +C  CG C   CP   I    E
Sbjct: 140 GCDGYGDCAAVCGNDAITITDGVAVVDPAKCGGCGKCVTACPNHLIFLRKE 190


>gi|262383329|ref|ZP_06076465.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294227|gb|EEY82159.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 308

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK   E
Sbjct: 58  IKNKCIGC--GRCEAICPRGNISIQDHFPVFNRQACVACKACERICPQNAIKFVGE 111


>gi|257469060|ref|ZP_05633154.1| dihydroorotate dehydrogenase family protein [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063306|ref|ZP_07927791.1| dihydroorotate dehydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313688982|gb|EFS25817.1| dihydroorotate dehydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 365

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  + CI C    C  VC        E    I+ D+C  CGVC  +CP  A+
Sbjct: 310 PVVSEDKCIGC--GICKTVCGYKAIEIVEKKAVINKDKCFGCGVCVSKCPTKAM 361


>gi|255657073|ref|ZP_05402482.1| putative nitroreductase [Clostridium difficile QCD-23m63]
          Length = 258

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 9  VDKELCIGC--GLCKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPQKAI 58


>gi|118472264|ref|YP_886216.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118173551|gb|ABK74447.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 304

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+     
Sbjct: 124 SDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIERREGD 180


>gi|20093521|ref|NP_613368.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus
          kandleri AV19]
 gi|19886359|gb|AAM01298.1| Pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus
          kandleri AV19]
          Length = 89

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C+ C    C   CP  C    ++   I  D C  CG+CE  CPV+AI+   E 
Sbjct: 36 EKCMNC--GLCFMYCPDGCIRPSDDGYVIDYDYCKGCGICESVCPVNAIEMVLEE 88


>gi|332520003|ref|ZP_08396467.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Lacinutrix algicola 5H-3-7-4]
 gi|332044562|gb|EGI80756.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Lacinutrix algicola 5H-3-7-4]
          Length = 1034

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLE 64
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +        E
Sbjct: 862 CQHCNHAPCETVCPVAATSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNGNDE 921

Query: 65  LWLKINSEY 73
               +N + 
Sbjct: 922 FDYFMNDDL 930


>gi|329926606|ref|ZP_08281019.1| nitrate reductase, beta subunit [Paenibacillus sp. HGF5]
 gi|328939147|gb|EGG35510.1| nitrate reductase, beta subunit [Paenibacillus sp. HGF5]
          Length = 511

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 234

Query: 59  TEPGLEL 65
            +     
Sbjct: 235 WKTNKAE 241


>gi|326800094|ref|YP_004317913.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingobacterium sp. 21]
 gi|326550858|gb|ADZ79243.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingobacterium sp. 21]
          Length = 189

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C++  C  VCP D  ++ +  +    +   CI C  C   CP    K   E
Sbjct: 59  CMHCENPACANVCPADAIHQDDFGVVHSANTPRCIGCSNCVLACPFGVPKKMEE 112


>gi|325288996|ref|YP_004265177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964397|gb|ADY55176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 427

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAIKPDT 59
           +++ C+ C    C EVCPV      +N      + +  + C+ CGVC   CP +A++   
Sbjct: 290 ISQECVGC--GKCAEVCPVLAISRPDNKEGRTAVQVDHEVCLGCGVCVRSCPKNAVEFVR 347

Query: 60  EPGL 63
               
Sbjct: 348 REIQ 351


>gi|323141624|ref|ZP_08076506.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT
          12067]
 gi|322413889|gb|EFY04726.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT
          12067]
          Length = 459

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV++CP +          I  D CIDCG C   CP  A    T+
Sbjct: 18 KCQGCV--SCVKLCPTEAIRVRNGKAEILGDRCIDCGACAAGCPYHAFNVKTD 68


>gi|322831881|ref|YP_004211908.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rahnella sp. Y9602]
 gi|321167082|gb|ADW72781.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rahnella sp. Y9602]
          Length = 209

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+      N + ++   C+ C +C   CP  AI       L++ + 
Sbjct: 57  CHQCEDAPCAQVCPVNAITRENNAIHLNESLCVSCKLCGLACPFGAITFSGSTPLDMPVD 116

Query: 69  INSEYATQWPNITTKKES 86
            N+  A   P        
Sbjct: 117 CNTSKALPAPRPPRAISP 134


>gi|314965218|gb|EFT09317.1| nitrate reductase, beta subunit [Propionibacterium acnes HL082PA2]
 gi|315093979|gb|EFT65955.1| nitrate reductase, beta subunit [Propionibacterium acnes HL060PA1]
 gi|315104591|gb|EFT76567.1| nitrate reductase, beta subunit [Propionibacterium acnes HL050PA2]
 gi|327329508|gb|EGE71268.1| nitrate reductase, beta subunit [Propionibacterium acnes HL103PA1]
          Length = 507

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPTCVSACPSGAIYKRAEDGIVLVDQDHCRGWRMCVSGCPYKKVFF 233


>gi|314922135|gb|EFS85966.1| nitrate reductase, beta subunit [Propionibacterium acnes HL001PA1]
          Length = 507

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPTCVSACPSGAIYKRAEDGIVLVDQDHCRGWRMCVSGCPYKKVFF 233


>gi|313886419|ref|ZP_07820139.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924135|gb|EFR34924.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 492

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C   CP  C  ++      I  + CI CG C   CP  AI     P
Sbjct: 108 YEVSNLCRGCVSRACSSNCPKSCISFKKNGQAQIDHEICISCGQCHKNCPYHAIVYIPVP 167

Query: 62  GLE 64
             E
Sbjct: 168 CEE 170



 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  E CI C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 141 IDHEICISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCLN 200

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 201 ACPFGAIF 208


>gi|312127640|ref|YP_003992514.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777659|gb|ADQ07145.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
          Length = 598

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C + CP +           I   +CI CGVC  +CP  AI
Sbjct: 544 IDKELCKGC--GICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + CP     +    + I  + C  CG+C   CP +AI    +   E
Sbjct: 528 EKRCPAGAC-KALLRIVIDKELCKGCGICAKNCPANAITGQIKKPFE 573


>gi|282853581|ref|ZP_06262918.1| nitrate reductase, beta subunit [Propionibacterium acnes J139]
 gi|282583034|gb|EFB88414.1| nitrate reductase, beta subunit [Propionibacterium acnes J139]
 gi|314982355|gb|EFT26448.1| nitrate reductase, beta subunit [Propionibacterium acnes HL110PA3]
 gi|315092603|gb|EFT64579.1| nitrate reductase, beta subunit [Propionibacterium acnes HL110PA4]
          Length = 507

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPTCVSACPSGAIYKRAEDGIVLVDQDHCRGWRMCVSGCPYKKVFF 233


>gi|262051550|ref|ZP_06023771.1| nitrate reductase beta chain narH [Staphylococcus aureus 930918-3]
 gi|259160534|gb|EEW45557.1| nitrate reductase beta chain narH [Staphylococcus aureus 930918-3]
          Length = 519

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|282911961|ref|ZP_06319757.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282323657|gb|EFB53973.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|312437182|gb|ADQ76253.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 519

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|224367545|ref|YP_002601708.1| PflC1 [Desulfobacterium autotrophicum HRM2]
 gi|223690261|gb|ACN13544.1| PflC1 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            CI C    CV+ CP         + + +   +CI CG C   C  +AI+ 
Sbjct: 54  KCIGC--GKCVKACPQGALEISSSDSIVLDAKKCIACGKCVDVCCANAIEM 102


>gi|207859432|ref|YP_002246083.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206711235|emb|CAR35611.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|126663084|ref|ZP_01734082.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacteria bacterium BAL38]
 gi|126624742|gb|EAZ95432.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacteria bacterium BAL38]
          Length = 1017

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  E    +  + C+    C   CP    + +     +   
Sbjct: 846 CQHCNHAPCETVCPVAATSHSREGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNK--- 902

Query: 68  KINSEY 73
             NSE+
Sbjct: 903 --NSEF 906


>gi|50841993|ref|YP_055220.1| nitrate reductase beta chain [Propionibacterium acnes KPA171202]
 gi|289428421|ref|ZP_06430107.1| nitrate reductase, beta subunit [Propionibacterium acnes J165]
 gi|295130073|ref|YP_003580736.1| nitrate reductase, beta subunit [Propionibacterium acnes SK137]
 gi|50839595|gb|AAT82262.1| nitrate reductase beta chain [Propionibacterium acnes KPA171202]
 gi|289158393|gb|EFD06610.1| nitrate reductase, beta subunit [Propionibacterium acnes J165]
 gi|291376783|gb|ADE00638.1| nitrate reductase, beta subunit [Propionibacterium acnes SK137]
 gi|313765379|gb|EFS36743.1| nitrate reductase, beta subunit [Propionibacterium acnes HL013PA1]
 gi|313792902|gb|EFS40969.1| nitrate reductase, beta subunit [Propionibacterium acnes HL110PA1]
 gi|313802645|gb|EFS43867.1| nitrate reductase, beta subunit [Propionibacterium acnes HL110PA2]
 gi|313806659|gb|EFS45166.1| nitrate reductase, beta subunit [Propionibacterium acnes HL087PA2]
 gi|313810855|gb|EFS48569.1| nitrate reductase, beta subunit [Propionibacterium acnes HL083PA1]
 gi|313814633|gb|EFS52347.1| nitrate reductase, beta subunit [Propionibacterium acnes HL025PA1]
 gi|313815216|gb|EFS52930.1| nitrate reductase, beta subunit [Propionibacterium acnes HL059PA1]
 gi|313817203|gb|EFS54917.1| nitrate reductase, beta subunit [Propionibacterium acnes HL046PA2]
 gi|313821735|gb|EFS59449.1| nitrate reductase, beta subunit [Propionibacterium acnes HL036PA1]
 gi|313824374|gb|EFS62088.1| nitrate reductase, beta subunit [Propionibacterium acnes HL036PA2]
 gi|313826732|gb|EFS64446.1| nitrate reductase, beta subunit [Propionibacterium acnes HL063PA1]
 gi|313828521|gb|EFS66235.1| nitrate reductase, beta subunit [Propionibacterium acnes HL063PA2]
 gi|313840283|gb|EFS77997.1| nitrate reductase, beta subunit [Propionibacterium acnes HL086PA1]
 gi|314915978|gb|EFS79809.1| nitrate reductase, beta subunit [Propionibacterium acnes HL005PA4]
 gi|314916884|gb|EFS80715.1| nitrate reductase, beta subunit [Propionibacterium acnes HL050PA1]
 gi|314921525|gb|EFS85356.1| nitrate reductase, beta subunit [Propionibacterium acnes HL050PA3]
 gi|314926841|gb|EFS90672.1| nitrate reductase, beta subunit [Propionibacterium acnes HL036PA3]
 gi|314931151|gb|EFS94982.1| nitrate reductase, beta subunit [Propionibacterium acnes HL067PA1]
 gi|314954792|gb|EFS99198.1| nitrate reductase, beta subunit [Propionibacterium acnes HL027PA1]
 gi|314958958|gb|EFT03060.1| nitrate reductase, beta subunit [Propionibacterium acnes HL002PA1]
 gi|314961254|gb|EFT05355.1| nitrate reductase, beta subunit [Propionibacterium acnes HL002PA2]
 gi|314964319|gb|EFT08419.1| nitrate reductase, beta subunit [Propionibacterium acnes HL082PA1]
 gi|314969418|gb|EFT13516.1| nitrate reductase, beta subunit [Propionibacterium acnes HL037PA1]
 gi|314980521|gb|EFT24615.1| nitrate reductase, beta subunit [Propionibacterium acnes HL072PA2]
 gi|314987534|gb|EFT31625.1| nitrate reductase, beta subunit [Propionibacterium acnes HL005PA2]
 gi|314989000|gb|EFT33091.1| nitrate reductase, beta subunit [Propionibacterium acnes HL005PA3]
 gi|315078666|gb|EFT50697.1| nitrate reductase, beta subunit [Propionibacterium acnes HL053PA2]
 gi|315081874|gb|EFT53850.1| nitrate reductase, beta subunit [Propionibacterium acnes HL078PA1]
 gi|315082631|gb|EFT54607.1| nitrate reductase, beta subunit [Propionibacterium acnes HL027PA2]
 gi|315086342|gb|EFT58318.1| nitrate reductase, beta subunit [Propionibacterium acnes HL002PA3]
 gi|315087591|gb|EFT59567.1| nitrate reductase, beta subunit [Propionibacterium acnes HL072PA1]
 gi|315099774|gb|EFT71750.1| nitrate reductase, beta subunit [Propionibacterium acnes HL059PA2]
 gi|315101920|gb|EFT73896.1| nitrate reductase, beta subunit [Propionibacterium acnes HL046PA1]
 gi|315106573|gb|EFT78549.1| nitrate reductase, beta subunit [Propionibacterium acnes HL030PA1]
 gi|315110361|gb|EFT82337.1| nitrate reductase, beta subunit [Propionibacterium acnes HL030PA2]
 gi|327333574|gb|EGE75294.1| nitrate reductase, beta subunit [Propionibacterium acnes HL096PA3]
 gi|327335100|gb|EGE76811.1| nitrate reductase, beta subunit [Propionibacterium acnes HL097PA1]
 gi|327445399|gb|EGE92053.1| nitrate reductase, beta subunit [Propionibacterium acnes HL013PA2]
 gi|327454794|gb|EGF01449.1| nitrate reductase, beta subunit [Propionibacterium acnes HL087PA3]
 gi|327455650|gb|EGF02305.1| nitrate reductase, beta subunit [Propionibacterium acnes HL083PA2]
 gi|327456858|gb|EGF03513.1| nitrate reductase, beta subunit [Propionibacterium acnes HL092PA1]
 gi|328755850|gb|EGF69466.1| nitrate reductase, beta subunit [Propionibacterium acnes HL087PA1]
 gi|328756631|gb|EGF70247.1| nitrate reductase, beta subunit [Propionibacterium acnes HL025PA2]
 gi|328758644|gb|EGF72260.1| nitrate reductase, beta subunit [Propionibacterium acnes HL020PA1]
 gi|332674914|gb|AEE71730.1| nitrate reductase beta subunit [Propionibacterium acnes 266]
          Length = 507

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPTCVSACPSGAIYKRAEDGIVLVDQDHCRGWRMCVSGCPYKKVFF 233


>gi|82751991|ref|YP_417732.1| nitrate reductase beta chain [Staphylococcus aureus RF122]
 gi|82657522|emb|CAI81964.1| nitrate reductase beta chain [Staphylococcus aureus RF122]
          Length = 519

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|332798424|ref|YP_004459923.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
 gi|332696159|gb|AEE90616.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
          Length = 504

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  +  E C  C    CV+ CP++          I+ + C++CG+C   C  +AI
Sbjct: 1  MIVIDLEKCRGCSL--CVKNCPLEAIKVINKKAKINDN-CVNCGICFRVCTFEAI 52


>gi|332669847|ref|YP_004452855.1| nitrate reductase subunit beta [Cellulomonas fimi ATCC 484]
 gi|332338885|gb|AEE45468.1| nitrate reductase, beta subunit [Cellulomonas fimi ATCC 484]
          Length = 558

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDACRGWRMCVSGCPYKKVYF 232


>gi|323978192|gb|EGB73278.1| 4Fe-4S binding domain-containing protein [Escherichia coli
          TW10509]
          Length = 184

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +     +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDMQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|317471719|ref|ZP_07931060.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
 gi|316900823|gb|EFV22796.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
          Length = 304

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            CI C H  C++VCP       ++ + +H ++CI C  C  ECP  A+K + E
Sbjct: 60  KCIGCHH--CIDVCPSKAISLIQDHIRVHAEKCIGCRQCVLECPGKALKSEGE 110


>gi|296452095|ref|ZP_06893806.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP08]
 gi|296877451|ref|ZP_06901484.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP07]
 gi|296259045|gb|EFH05929.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP08]
 gi|296431463|gb|EFH17277.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP07]
          Length = 260

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 11 VDKELCIGC--GLCKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPQKAI 60


>gi|289424517|ref|ZP_06426300.1| nitrate reductase, beta subunit [Propionibacterium acnes SK187]
 gi|289155214|gb|EFD03896.1| nitrate reductase, beta subunit [Propionibacterium acnes SK187]
          Length = 507

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 183 CEHCLNPTCVSACPSGAIYKRAEDGIVLVDQDHCRGWRMCVSGCPYKKVFF 233


>gi|254818781|ref|ZP_05223782.1| NarH [Mycobacterium intracellulare ATCC 13950]
          Length = 539

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|298529637|ref|ZP_07017040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511073|gb|EFI34976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 652

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V    CI C    C++VCP     E    G+    +    C  CG+C   CP  AI+   
Sbjct: 579 VDINRCIGC--GKCIQVCPFGAVKEVDFRGQPKAEVIETVCQGCGICTATCPQGAIQLSH 636

Query: 60  EPGLELWLKINS 71
               ++  ++N+
Sbjct: 637 FTDNQILAEVNA 648


>gi|149196293|ref|ZP_01873348.1| molybdopterin oxidoreductase, iron sulfur subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149140554|gb|EDM28952.1| molybdopterin oxidoreductase, iron sulfur subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 459

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           VT  C  C    C E CPV+ + + E    +    D+CI C  C  +CP +
Sbjct: 112 VTSACHHCLEPACSEGCPVNAYDKDEVTGIVKHLDDQCIGCQYCILKCPYE 162


>gi|147919778|ref|YP_686476.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110621872|emb|CAJ37150.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 276

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           ++C  C  T+CV VCP       +      I    C  CG CE  C    I
Sbjct: 200 DDCTRC--TNCVGVCPFKAIRLDDIVEGPVIDERRCKGCGRCEVVCRPGVI 248


>gi|319953586|ref|YP_004164853.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Cellulophaga algicola DSM 14237]
 gi|319422246|gb|ADV49355.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Cellulophaga algicola DSM 14237]
          Length = 1045

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 872 CQHCNHAPCETVCPVAATSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNW 923


>gi|314935680|ref|ZP_07843032.1| nitrate reductase, beta subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656245|gb|EFS19985.1| nitrate reductase, beta subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 519

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|323526712|ref|YP_004228865.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1001]
 gi|323383714|gb|ADX55805.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1001]
          Length = 414

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D     +N   +  D C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDDNNYVVRADVCNGCMACVPPCPTGAIDN 66


>gi|228474753|ref|ZP_04059484.1| nitrate reductase, beta subunit [Staphylococcus hominis SK119]
 gi|228271416|gb|EEK12784.1| nitrate reductase, beta subunit [Staphylococcus hominis SK119]
          Length = 519

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|218702339|ref|YP_002409968.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli IAI39]
 gi|218372325|emb|CAR20193.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli IAI39]
          Length = 157

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|149911479|ref|ZP_01900095.1| putative nitrite reductase, Fe-S protein (NrfC) [Moritella sp.
           PE36]
 gi|149805443|gb|EDM65451.1| putative nitrite reductase, Fe-S protein (NrfC) [Moritella sp.
           PE36]
          Length = 228

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C +  CV VCP    Y       + +H D+C+ CG C   CP      + E
Sbjct: 96  SCQHCDNAPCVTVCPTGASYVDLKTGIVDVHSDKCVGCGYCLAACPYQVRFFNPE 150


>gi|73538256|ref|YP_298623.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72121593|gb|AAZ63779.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 950

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
            C+ C+   C  VCPV         L     + C+    C   CP  
Sbjct: 781 PCMHCEDAPCELVCPVGATVHDSAGLNVQVYNRCVGTRFCSNNCPYK 827


>gi|78355128|ref|YP_386577.1| ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217533|gb|ABB36882.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 421

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEP 61
           +  E CI C    C E CP    +         P E  CI+CG C   CPV AI      
Sbjct: 30  IDPEKCIGCD--TCQEYCPTGAIFGDTGSAHSIPHEEICINCGQCLTHCPVGAIY----- 82

Query: 62  GLELWLKINSEYATQWPNITTKKESLP 88
            ++ W+    E + +  +   K  ++P
Sbjct: 83  EVQSWV---RELSEKIKDPEIKVIAMP 106


>gi|150019727|ref|YP_001311981.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149906192|gb|ABR37025.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 273

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  E C+ C    CV+ C  +      N   I    C+ CG C   CP  A+  D 
Sbjct: 1  MMIVDKEKCVGC--GLCVKDCFPNDIEINGNKAEIKNVRCMKCGHCIAVCPKGAVSTDE 57


>gi|15925386|ref|NP_372920.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927974|ref|NP_375507.1| nitrate reductase beta chain narH [Staphylococcus aureus subsp.
           aureus N315]
 gi|148268833|ref|YP_001247776.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394905|ref|YP_001317580.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980711|ref|YP_001442970.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253314733|ref|ZP_04837946.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255007170|ref|ZP_05145771.2| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257794736|ref|ZP_05643715.1| nitrate reductase, beta subunit [Staphylococcus aureus A9781]
 gi|258407416|ref|ZP_05680559.1| respiratory nitrate reductase beta subunit [Staphylococcus aureus
           A9763]
 gi|258422256|ref|ZP_05685168.1| nitrate reductase, beta subunit [Staphylococcus aureus A9719]
 gi|258439648|ref|ZP_05690394.1| respiratory nitrate reductase beta subunit [Staphylococcus aureus
           A9299]
 gi|258442795|ref|ZP_05691355.1| respiratory nitrate reductase beta subunit [Staphylococcus aureus
           A8115]
 gi|258446505|ref|ZP_05694660.1| nitrate reductase subunit beta narH [Staphylococcus aureus A6300]
 gi|258450378|ref|ZP_05698470.1| nitrate reductase subunit beta narH [Staphylococcus aureus A6224]
 gi|258455246|ref|ZP_05703206.1| nitrate reductase, beta subunit [Staphylococcus aureus A5937]
 gi|269204028|ref|YP_003283297.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893842|ref|ZP_06302074.1| nitrate reductase, beta subunit [Staphylococcus aureus A8117]
 gi|282928429|ref|ZP_06336030.1| nitrate reductase, beta subunit [Staphylococcus aureus A10102]
 gi|295405084|ref|ZP_06814897.1| nitrate reductase [Staphylococcus aureus A8819]
 gi|296276005|ref|ZP_06858512.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244141|ref|ZP_06928031.1| nitrate reductase [Staphylococcus aureus A8796]
 gi|13702345|dbj|BAB43486.1| nitrate reductase beta chain narH [Staphylococcus aureus subsp.
           aureus N315]
 gi|14248170|dbj|BAB58558.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741902|gb|ABQ50200.1| respiratory nitrate reductase beta subunit [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149947357|gb|ABR53293.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722846|dbj|BAF79263.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788708|gb|EEV27048.1| nitrate reductase, beta subunit [Staphylococcus aureus A9781]
 gi|257840928|gb|EEV65379.1| respiratory nitrate reductase beta subunit [Staphylococcus aureus
           A9763]
 gi|257841687|gb|EEV66124.1| nitrate reductase, beta subunit [Staphylococcus aureus A9719]
 gi|257847424|gb|EEV71426.1| respiratory nitrate reductase beta subunit [Staphylococcus aureus
           A9299]
 gi|257851916|gb|EEV75850.1| respiratory nitrate reductase beta subunit [Staphylococcus aureus
           A8115]
 gi|257854573|gb|EEV77521.1| nitrate reductase subunit beta narH [Staphylococcus aureus A6300]
 gi|257856470|gb|EEV79379.1| nitrate reductase subunit beta narH [Staphylococcus aureus A6224]
 gi|257862457|gb|EEV85225.1| nitrate reductase, beta subunit [Staphylococcus aureus A5937]
 gi|262076318|gb|ACY12291.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282589824|gb|EFB94908.1| nitrate reductase, beta subunit [Staphylococcus aureus A10102]
 gi|282763900|gb|EFC04028.1| nitrate reductase, beta subunit [Staphylococcus aureus A8117]
 gi|285818057|gb|ADC38544.1| Respiratory nitrate reductase beta chain [Staphylococcus aureus
           04-02981]
 gi|294970029|gb|EFG46047.1| nitrate reductase [Staphylococcus aureus A8819]
 gi|297178919|gb|EFH38164.1| nitrate reductase [Staphylococcus aureus A8796]
 gi|315128590|gb|EFT84594.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329723757|gb|EGG60286.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 519

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|295106473|emb|CBL04016.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 201

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C+ VCP     + E+ +  +  + CI C  C   CP + ++       E +L
Sbjct: 60  CQHCDNPSCLNVCPTGATQKREDGIVWVDNELCIGCESCIKACPYEGVRTLIANEPEYYL 119

Query: 68  KI 69
            +
Sbjct: 120 DV 121


>gi|293374979|ref|ZP_06621274.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
 gi|292646389|gb|EFF64404.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
          Length = 568

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGLELW 66
          NC  C    CV  CPV           I  + CI CG+C   CP +  K +TE   ++ +
Sbjct: 10 NCKNCY--ACVRACPVQSIKIKNEQAIIMEERCIACGLCLKACPKNVKKIETELEKVKQF 67

Query: 67 LK 68
          +K
Sbjct: 68 IK 69


>gi|261405829|ref|YP_003242070.1| nitrate reductase subunit beta [Paenibacillus sp. Y412MC10]
 gi|261282292|gb|ACX64263.1| nitrate reductase, beta subunit [Paenibacillus sp. Y412MC10]
          Length = 511

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 234

Query: 59  TEPGLEL 65
            +     
Sbjct: 235 WKTNKAE 241


>gi|198241756|ref|YP_002218172.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197936272|gb|ACH73605.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326625971|gb|EGE32316.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|168008160|ref|XP_001756775.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692013|gb|EDQ78372.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 161

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   + + E       +  K++ L +  + +  
Sbjct: 117 V--EGPNFEFTTETHEEL------LYDKEKLLENGDRWETE 149


>gi|197116525|ref|YP_002136952.1| molybdopterin-binding oxidoreductase [Geobacter bemidjiensis Bem]
 gi|197085885|gb|ACH37156.1| molybdopterin-binding oxidoreductase [Geobacter bemidjiensis Bem]
          Length = 966

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C  VCPV    +  E   A   + CI    C   CP    + + 
Sbjct: 802 CQHCDAAPCEPVCPVFAAVHNEEGLNAQIYNRCIGTRYCSNNCPYKVRRFNW 853



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            ++ P     +    +AI    CI CG C   C 
Sbjct: 726 EDMYPAHEHKKHRWGMAIDLQRCIGCGACAVACY 759


>gi|16767529|ref|NP_463144.1| formate-dependent nitrite reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991482|ref|ZP_02572581.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168466975|ref|ZP_02700823.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821264|ref|ZP_02833264.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197263392|ref|ZP_03163466.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|16422839|gb|AAL23103.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|195630636|gb|EDX49248.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197241647|gb|EDY24267.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205330187|gb|EDZ16951.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205342069|gb|EDZ28833.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|261249378|emb|CBG27241.1| cytochrome C-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996599|gb|ACY91484.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160771|emb|CBW20302.1| 4Fe-4S subunit, subunit of nitrite reductase complex [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312915383|dbj|BAJ39357.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088687|emb|CBY98445.1| Uncharacterized ferredoxin-like protein ydhX [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223150|gb|EFX48220.1| NrfC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323132620|gb|ADX20050.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991095|gb|AEF10078.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|116754637|ref|YP_843755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116666088|gb|ABK15115.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 168

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C+   CV VCP     +      +  + D CI C  C   C    I  D
Sbjct: 59  CRHCEDAPCVAVCPTGALTQDAISGVVRHNKDICIGCWTCASVCTYGVIGRD 110


>gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
 gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
          Length = 598

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C + CP +           I   +CI CGVC  +CP  AI
Sbjct: 544 IDKDLCKGC--GICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 35.7 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + CP     +    + I  D C  CG+C   CP +AI    +   E
Sbjct: 528 EKRCPAGAC-KALLRIVIDKDLCKGCGICAKNCPANAITGQIKKPFE 573


>gi|307129708|ref|YP_003881724.1| NrfC protein [Dickeya dadantii 3937]
 gi|306527237|gb|ADM97167.1| NrfC protein [Dickeya dadantii 3937]
          Length = 232

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           ++C  C +  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 98  QSCQHCDNPPCVSVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 146


>gi|291279681|ref|YP_003496516.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Deferribacter desulfuricans SSM1]
 gi|290754383|dbj|BAI80760.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Deferribacter desulfuricans SSM1]
          Length = 586

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T+ C  CK       CP     +  N   I    C++CGVC   CP DAI    E   E
Sbjct: 527 TDKCKNCKICYEKFECPAIFEDKLANAAKIDELLCVNCGVCMSVCPFDAIAYVDEVDDE 585


>gi|218131017|ref|ZP_03459821.1| hypothetical protein BACEGG_02620 [Bacteroides eggerthii DSM 20697]
 gi|317477088|ref|ZP_07936330.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986721|gb|EEC53054.1| hypothetical protein BACEGG_02620 [Bacteroides eggerthii DSM 20697]
 gi|316906881|gb|EFV28593.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 373

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + T NCI C    CV+ C  D  +   E    I   +C+ CG C   C  DA        
Sbjct: 191 IDTGNCIGCN--ICVKHCAHDAIHLNAERKAEIDYAKCVGCGQCVALCQHDAAVVSD--- 245

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            +   ++N + A     +   K 
Sbjct: 246 WDTSERLNYKIAEYSAAVLKDKP 268


>gi|223937675|ref|ZP_03629577.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [bacterium
           Ellin514]
 gi|223893647|gb|EEF60106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [bacterium
           Ellin514]
          Length = 546

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           VT  C  C    C+  CPV  + +      +    D+CI C  C  +CP +
Sbjct: 111 VTTACHHCVDPGCLSGCPVLAYDKDPVTGIVRHLDDQCIGCQYCIMKCPYE 161


>gi|160893288|ref|ZP_02074075.1| hypothetical protein CLOL250_00837 [Clostridium sp. L2-50]
 gi|156864980|gb|EDO58411.1| hypothetical protein CLOL250_00837 [Clostridium sp. L2-50]
          Length = 622

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ T+ CI C    C+    CP    +EG   + I    C  C +C   CPV AI    E
Sbjct: 562 HIDTDACIGC--QKCIREIGCPALYTFEG--KVCIDESLCTGCTLCSQLCPVHAIGDGQE 617

Query: 61  PGLEL 65
              + 
Sbjct: 618 ERGQA 622


>gi|39997802|ref|NP_953753.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|39984694|gb|AAR36080.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|298506743|gb|ADI85466.1| ferredoxin-related protein [Geobacter sulfurreducens KN400]
          Length = 56

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M++ ++++C  C    CV+ CPV+      +   I  D CIDCG C   CPV AI
Sbjct: 1  MSHAISDDCTNC--GACVDSCPVNAIAPAGDKHKIDADTCIDCGACVDTCPVSAI 53


>gi|320182216|gb|EFW57119.1| putative oxidoreductase, Fe-S subunit [Shigella boydii ATCC 9905]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|319782990|ref|YP_004142466.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168878|gb|ADV12416.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 163

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K   L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKDRLLANGDRWERE 151


>gi|326772007|ref|ZP_08231292.1| nitrate reductase, beta subunit [Actinomyces viscosus C505]
 gi|326638140|gb|EGE39041.1| nitrate reductase, beta subunit [Actinomyces viscosus C505]
          Length = 560

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSACPSGAMYKRTEDGIVLVDQDACRGWRMCVSSCPYKKVYF 234


>gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans
           SSM1]
 gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans
           SSM1]
          Length = 596

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C    C +VCPV      +     I   +C+ C  C   CP +AI
Sbjct: 545 VDEDRCKKC--GICFKVCPVGAISWEKGKPAYIDKSKCVKCRECIVNCPFNAI 595


>gi|218193826|gb|EEC76253.1| hypothetical protein OsI_13702 [Oryza sativa Indica Group]
          Length = 261

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 159 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 216

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 217 VEGP----------NFEFATETHEELLYDKEKLLENGDRWETE 249


>gi|212712690|ref|ZP_03320818.1| hypothetical protein PROVALCAL_03787 [Providencia alcalifaciens DSM
           30120]
 gi|212684606|gb|EEB44134.1| hypothetical protein PROVALCAL_03787 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+H  CV+VCP    +  +    + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCEHAPCVDVCPTGASFIDKTTGIVDVNPDLCVGCQYCIAACPYR 138


>gi|197251255|ref|YP_002149193.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214958|gb|ACH52355.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|332086808|gb|EGI91944.1| hydrogenase-4 component A [Shigella boydii 5216-82]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|301064114|ref|ZP_07204561.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
           protein [delta proteobacterium NaphS2]
 gi|300441734|gb|EFK06052.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
           protein [delta proteobacterium NaphS2]
          Length = 912

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKP 57
           V TE C +C    CV  CP              I    C  CG+C  ECP  AI  
Sbjct: 840 VNTEKCAVC--CTCVRTCPFQIPVIDREIGAAFIDASLCRGCGMCVAECPGKAIFM 893


>gi|269104124|ref|ZP_06156820.1| electron transport protein hydN [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160764|gb|EEZ39261.1| electron transport protein hydN [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 181

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    C +VCP +     + F+ +    CI C  C   CP  A+   T+   E
Sbjct: 58  CRQCDDAPCAQVCPNNAIVLEDGFVKVIQSRCIGCKTCVIACPYGAMNVVTKMVEE 113


>gi|257423879|ref|ZP_05600308.1| nitrate reductase subunit beta [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426562|ref|ZP_05602964.1| nitrate reductase subunit beta [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429198|ref|ZP_05605585.1| nitrate reductase subunit beta [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257431844|ref|ZP_05608207.1| nitrate reductase subunit beta [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434804|ref|ZP_05610855.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282902311|ref|ZP_06310204.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282909715|ref|ZP_06317524.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282915256|ref|ZP_06323033.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus M899]
 gi|282920980|ref|ZP_06328698.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925886|ref|ZP_06333534.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|283959179|ref|ZP_06376620.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497652|ref|ZP_06665506.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293511232|ref|ZP_06669928.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|293549840|ref|ZP_06672512.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus M1015]
 gi|257272897|gb|EEV04999.1| nitrate reductase subunit beta [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276193|gb|EEV07644.1| nitrate reductase subunit beta [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279679|gb|EEV10266.1| nitrate reductase subunit beta [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282723|gb|EEV12855.1| nitrate reductase subunit beta [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285400|gb|EEV15516.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282312715|gb|EFB43119.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282315395|gb|EFB45779.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282320977|gb|EFB51311.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus M899]
 gi|282326289|gb|EFB56593.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282596770|gb|EFC01729.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283788771|gb|EFC27598.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290918887|gb|EFD95963.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096583|gb|EFE26841.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291465858|gb|EFF08388.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus M809]
          Length = 519

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|257792497|ref|YP_003183103.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317490367|ref|ZP_07948851.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833565|ref|ZP_08166014.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257476394|gb|ACV56714.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316910502|gb|EFV32127.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485489|gb|EGC87958.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 194

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV VCP    Y   N +  I  ++CI C  C   CP      
Sbjct: 59  CQQCADAPCVHVCPTGASYRDGNNVVLIDREKCIGCKYCMMACPYGVRDW 108


>gi|157804166|ref|YP_001492715.1| NADH dehydrogenase subunit I [Rickettsia canadensis str. McKiel]
 gi|226737413|sp|A8EZZ7|NUOI_RICCK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157785429|gb|ABV73930.1| NADH dehydrogenase subunit I [Rickettsia canadensis str. McKiel]
          Length = 159

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI 
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEAEALDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIV 115

Query: 57  PDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                        N E+A  T    I  K+  L +  K +
Sbjct: 116 EGP----------NFEFASLTHTALIYDKERLLQNGDKWE 145


>gi|149923332|ref|ZP_01911740.1| Fe-S-cluster-containing hydrogenase [Plesiocystis pacifica SIR-1]
 gi|149815812|gb|EDM75334.1| Fe-S-cluster-containing hydrogenase [Plesiocystis pacifica SIR-1]
          Length = 1157

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
              V+   C  C+   C  VCPV    +  E    +  + CI    C   CP  
Sbjct: 959  AVVMPVACQHCETAPCENVCPVQATAHSPEGLNDMAYNRCIGTRYCANNCPYK 1011


>gi|59711966|ref|YP_204742.1| formate dehydrogenase N, beta subunit [Vibrio fischeri ES114]
 gi|197334851|ref|YP_002156159.1| formate dehydrogenase iron-sulfur subunit [Vibrio fischeri MJ11]
 gi|59480067|gb|AAW85854.1| formate dehydrogenase N, beta subunit [Vibrio fischeri ES114]
 gi|197316341|gb|ACH65788.1| formate dehydrogenase iron-sulfur subunit [Vibrio fischeri MJ11]
          Length = 202

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP DCF   E+ +   + D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCKAVCPADCFEHTEDGIVRHNKDLCIGCGYCLFACPFGA 103


>gi|15602251|ref|NP_245323.1| electron transport complex protein RnfB [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|17368782|sp|Q9CNP1|RNFB_PASMU RecName: Full=Electron transport complex protein rnfB
 gi|12720633|gb|AAK02470.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 198

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    I PD C  C +C P CP D I  
Sbjct: 108 AFIDEDMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCISM 162


>gi|302336924|ref|YP_003802130.1| dihydroorotate dehydrogenase [Spirochaeta smaragdinae DSM 11293]
 gi|301634109|gb|ADK79536.1| dihydroorotate dehydrogenase family protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 834

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV VCP +        +++  + C +CG C   CP  A+
Sbjct: 777 CINCL--RCVAVCPYNARTLDFPIMSVDRELCRNCGACVSVCPTGAL 821


>gi|261822951|ref|YP_003261057.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
 gi|261606964|gb|ACX89450.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
          Length = 316

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 2   TYVV---TENCILCKHTDCVEVCPVD-----CFYEGENFLAIH-PDECIDCGVCEPECPV 52
            Y +    + C  C    C EVCP           G+ F  I    +C  C  CE  CP 
Sbjct: 50  AYQIMFSPDKCQHC--GKCAEVCPHHIHTLLADARGQRFHHIDRAIQCTGCRKCEAICPS 107

Query: 53  DA--IKPDTEPGLELWLKINSEYATQ 76
            A  I        EL   I  +Y+  
Sbjct: 108 HALDIIGQDMTVAELMAVIMQDYSFY 133


>gi|228947455|ref|ZP_04109745.1| Respiratory nitrate reductase 2 beta chain [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811975|gb|EEM58306.1| Respiratory nitrate reductase 2 beta chain [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 465

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  D C     C   CP   +  +       
Sbjct: 147 CEHCLNPSCVASCPSGALYKREEDGIVLVDQDACRGWRFCMNGCPYHKVYYNWNTHKAE 205


>gi|21228736|ref|NP_634658.1| putative pyruvate:ferredoxin oxidoreductase [Methanosarcina mazei
           Go1]
 gi|20907247|gb|AAM32330.1| putative pyruvate:ferredoxin oxidoreductase [Methanosarcina mazei
           Go1]
          Length = 623

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + TE+C  C    CV+   CP      GE    I  D C  CG+C   CP  AI
Sbjct: 566 IDTESCTGC--GLCVKQLGCPALFLPAGEEKPVI-QDSCSGCGLCAQVCPSGAI 616


>gi|125776379|ref|XP_001359257.1| GA17794 [Drosophila pseudoobscura pseudoobscura]
 gi|195152209|ref|XP_002017029.1| GL21733 [Drosophila persimilis]
 gi|54639000|gb|EAL28402.1| GA17794 [Drosophila pseudoobscura pseudoobscura]
 gi|194112086|gb|EDW34129.1| GL21733 [Drosophila persimilis]
          Length = 217

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 115 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 173 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 205


>gi|299146147|ref|ZP_07039215.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_23]
 gi|298516638|gb|EFI40519.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_23]
          Length = 288

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV+ CP +      N   I P +C  C  C   CP + I     P  + 
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNTIIELNFPPRKP 275

Query: 66  WLK 68
            ++
Sbjct: 276 KVE 278



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 188


>gi|294677721|ref|YP_003578336.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus
           SB 1003]
 gi|294476541|gb|ADE85929.1| [pyruvate formate-lyase]-activating enzyme-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 305

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C+ VCPV               +CI CG C   CP +A+
Sbjct: 60  ACIGC--GKCIPVCPVGALSRDNPGFV-DRAKCIRCGDCTKVCPTEAL 104


>gi|288958981|ref|YP_003449322.1| NADH dehydrogenase I chain I [Azospirillum sp. B510]
 gi|288911289|dbj|BAI72778.1| NADH dehydrogenase I chain I [Azospirillum sp. B510]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 22/113 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDA+
Sbjct: 60  EERCIACKL--CEAVCPALAITIEAEPRDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAV 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                P  E   +   E          K++ L +  + +      +   +  P
Sbjct: 118 VM--GPNFEFSTENREELF------YNKQKLLANGDRWEAEIA--QNLAAEAP 160


>gi|262190854|ref|ZP_06049074.1| iron-sulfur cluster-binding protein [Vibrio cholerae CT 5369-93]
 gi|262033273|gb|EEY51791.1| iron-sulfur cluster-binding protein [Vibrio cholerae CT 5369-93]
          Length = 553

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPTDTQKFIE 247



 Score = 37.3 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVD 53
           C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 420 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQ 464


>gi|260778692|ref|ZP_05887584.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604856|gb|EEX31151.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 553

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI        E
Sbjct: 184 KGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAIHYALPNPQE 241

Query: 65  LWLKINSEYATQWP 78
               I    A    
Sbjct: 242 TQKFIERTLANYHQ 255



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C LC    CV VCP    +       L     +C+ CG+C   CP +A+  
Sbjct: 420 CTLC--MSCVAVCPSRALHTDGQSPSLKFVEQDCVQCGLCTKACPENALTM 468


>gi|261820351|ref|YP_003258457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium wasabiae WPP163]
 gi|261604364|gb|ACX86850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium wasabiae WPP163]
          Length = 232

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 99  SCQHCENPPCVAVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 146


>gi|227115216|ref|ZP_03828872.1| putative component of polysulfide reductase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 232

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 99  SCQHCENPPCVAVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 146


>gi|161505257|ref|YP_001572369.1| hypothetical protein SARI_03397 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866604|gb|ABX23227.1| hypothetical protein SARI_03397 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|50119856|ref|YP_049023.1| putative component of polysulfide reductase [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610382|emb|CAG73826.1| putative component of polysulfide reductase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 232

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 99  SCQHCENPPCVAVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 146


>gi|328952559|ref|YP_004369893.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfobacca acetoxidans DSM 11109]
 gi|328452883|gb|AEB08712.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfobacca acetoxidans DSM 11109]
          Length = 1003

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
             YV  + C  C    CV+ CP       E+ +  I+   C  CG C  ECP   I+    
Sbjct: 933  AYVEPDRCAACL--VCVKTCPFGVPRINEDNVSEINTALCQGCGTCASECPAKVIQLAHY 990

Query: 61   PGLELWLKINSEY 73
               +    I + +
Sbjct: 991  EDEKFKANIMASF 1003



 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 23/81 (28%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPV-------------DCFYEGENFLA-----IHPDECIDCG 44
           Y+    C  C   DC +VCPV             +  Y            I    CI CG
Sbjct: 107 YLDPVKCTGC--GDCRKVCPVRAVNEFNAGLDLREATYIRYPQAVPLAFAIDRQVCIGCG 164

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C   AI          
Sbjct: 165 LCGQVCLAGAINYLDTARQRE 185


>gi|323486564|ref|ZP_08091886.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14163]
 gi|323694298|ref|ZP_08108472.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14673]
 gi|323400157|gb|EGA92533.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14163]
 gi|323501644|gb|EGB17532.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14673]
          Length = 454

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +NC  CK    V+ CPV      +  + I  +EC +CG C  +CP DA+  +T+
Sbjct: 307 DADNCKGCKSCVVVDACPVSAAAVEDGTVRIPEEECNNCGRCTSKCPFDAVTEETK 362


>gi|289548469|ref|YP_003473457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
 gi|289182086|gb|ADC89330.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
          Length = 183

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           NC  C+   CV  CP     + ++ +  +    CI C  C   CP  AI  + +  
Sbjct: 59  NCFHCEVAPCVLACPTSAMRKRQDGIVYLEETRCIGCKACIIACPYGAITFNPDTM 114


>gi|251790826|ref|YP_003005547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Dickeya zeae Ech1591]
 gi|247539447|gb|ACT08068.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae
           Ech1591]
          Length = 232

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           ++C  C +  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 98  QSCQHCDNPPCVSVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 146


>gi|168236981|ref|ZP_02662039.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734388|ref|YP_002117213.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194709890|gb|ACF89111.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290036|gb|EDY29395.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|153832369|ref|ZP_01985036.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01]
 gi|156974556|ref|YP_001445463.1| ferredoxin [Vibrio harveyi ATCC BAA-1116]
 gi|148871398|gb|EDL70261.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01]
 gi|156526150|gb|ABU71236.1| hypothetical protein VIBHAR_02274 [Vibrio harveyi ATCC BAA-1116]
          Length = 553

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPEDTQKFIE 247



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCEKACP 462


>gi|62182728|ref|YP_219145.1| putative nitrite reductase; formate-dependent, Fe-S centers
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224586045|ref|YP_002639844.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62130361|gb|AAX68064.1| putative nitrite reductase; formate-dependent, Fe-S centers
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224470573|gb|ACN48403.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322717228|gb|EFZ08799.1| Protein nrfC [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|326630202|gb|EGE36545.1| putative nitrite reductase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|56416077|ref|YP_153152.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161617418|ref|YP_001591383.1| hypothetical protein SPAB_05274 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168231287|ref|ZP_02656345.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470140|ref|ZP_03076124.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197365004|ref|YP_002144641.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|238912736|ref|ZP_04656573.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56130334|gb|AAV79840.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161366782|gb|ABX70550.1| hypothetical protein SPAB_05274 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456504|gb|EDX45343.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197096481|emb|CAR62088.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205334315|gb|EDZ21079.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 223

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|302392756|ref|YP_003828576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
 gi|302204833|gb|ADL13511.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
          Length = 55

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + + C+ C    CVE CPVD   EG++   I  DEC++CG C   CPV+AI
Sbjct: 1  MAYTINDECVDC--GTCVEECPVDAIIEGDDHFEIDEDECVECGNCLDACPVEAI 53


>gi|254823188|ref|ZP_05228189.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          intracellulare ATCC 13950]
          Length = 498

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYA 74
          C+   P +  +     L I P  C+DCG C   CPV AI PDT  +     +++IN+ + 
Sbjct: 3  CIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDTRLDTNQLPFVEINASF- 61

Query: 75 TQWPNITTKKESLP 88
            +P     ++  P
Sbjct: 62 --YPKRPEGEKLPP 73


>gi|254512016|ref|ZP_05124083.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535727|gb|EEE38715.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium KLH11]
          Length = 164

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKEKLLSNGERWEAE 152


>gi|126727165|ref|ZP_01743002.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2150]
 gi|126703593|gb|EBA02689.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2150]
          Length = 163

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 119 V--EGPNFEFATETREELF------YDKAKLLDNGDRWESE 151


>gi|262402197|ref|ZP_06078758.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586]
 gi|297579085|ref|ZP_06941013.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385]
 gi|262350979|gb|EEZ00112.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586]
 gi|297536679|gb|EFH75512.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385]
          Length = 553

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 16/77 (20%)

Query: 6   TENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVD 53
           T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP +
Sbjct: 173 TDLCAHSSRGVKGCE--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTE 230

Query: 54  AIKPD--TEPGLELWLK 68
           AI          + +++
Sbjct: 231 AIHYALPNPTDTQKFIE 247



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVD 53
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQ 464


>gi|58261400|ref|XP_568110.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134115557|ref|XP_773492.1| hypothetical protein CNBI1060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256118|gb|EAL18845.1| hypothetical protein CNBI1060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230192|gb|AAW46593.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 273

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 133 EERCIACKL--CEAICPAQAITIESEAREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 190


>gi|302341854|ref|YP_003806383.1| hypothetical protein Deba_0414 [Desulfarculus baarsii DSM 2075]
 gi|301638467|gb|ADK83789.1| protein of unknown function DUF362 [Desulfarculus baarsii DSM 2075]
          Length = 376

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    C  +CP  C        +   D CI C  C   CPV AI  
Sbjct: 316 CRAC--GKCAAICPAGCLRLEGRRASFDHDRCIRCYCCHEVCPVGAITF 362


>gi|298244772|ref|ZP_06968578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297552253|gb|EFH86118.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 263

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++ C  C H  C+E CP       E   + + PD C  CG C P CP   +  + 
Sbjct: 76  SDVCKHCTHAGCMEACPTGAIVRNEFGDVYVQPDICNGCGYCVPSCPFGVVDRNE 130


>gi|291533213|emb|CBL06326.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Megamonas hypermegale ART12/1]
          Length = 55

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T++CI C    C   CPV    EGEN   I  D C++CG C+  CP  AI
Sbjct: 1  MAYKITDDCISC--GACAGTCPVGAISEGENHYEIDADMCVECGACQAGCPAGAI 53


>gi|238793441|ref|ZP_04637066.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia intermedia ATCC
          29909]
 gi|238727214|gb|EEQ18743.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia intermedia ATCC
          29909]
          Length = 161

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 38 CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGAMSVVTKQVEVMF 95


>gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 597

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y + ++ C+ C    C++ CP D    E +    +  ++CI CG C   CP  A+  +
Sbjct: 542 YRIDDHICVGC--GVCIKACPTDAIEGERKQAHHLDMEKCIKCGGCVDACPFHAVIKE 597



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CP     +   F  I    C+ CGVC   CP DAI+ +
Sbjct: 529 KKCPAGVC-QALFFYRIDDHICVGCGVCIKACPTDAIEGE 567


>gi|167761070|ref|ZP_02433197.1| hypothetical protein CLOSCI_03468 [Clostridium scindens ATCC 35704]
 gi|167661304|gb|EDS05434.1| hypothetical protein CLOSCI_03468 [Clostridium scindens ATCC 35704]
          Length = 159

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 1   MTYV-----VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           M Y      V   C+ C+   C+EVCPV   +  E     I+PD+CI C +C   CP+  
Sbjct: 40  MAYEEAAISVPMMCMQCEEPCCMEVCPVGAIFRDEKDAVIINPDKCIGCKMCMNACPLGN 99

Query: 55  IKPDTEPGL 63
           I  +TE   
Sbjct: 100 IGFNTERRQ 108


>gi|21284047|ref|NP_647135.1| nitrate reductase beta chain narH [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49487178|ref|YP_044399.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650939|ref|YP_187197.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|151222508|ref|YP_001333330.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510588|ref|YP_001576247.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141326|ref|ZP_03565819.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253730068|ref|ZP_04864233.1| nitrate reductase beta chain narH [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734188|ref|ZP_04868353.1| nitrate reductase beta chain narH [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258425060|ref|ZP_05687931.1| nitrate reductase, beta subunit [Staphylococcus aureus A9635]
 gi|258451299|ref|ZP_05699332.1| nitrate reductase, beta subunit [Staphylococcus aureus A5948]
 gi|262048806|ref|ZP_06021687.1| nitrate reductase beta chain narH [Staphylococcus aureus D30]
 gi|282920381|ref|ZP_06328104.1| nitrate reductase, beta subunit [Staphylococcus aureus A9765]
 gi|284025416|ref|ZP_06379814.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           132]
 gi|294848939|ref|ZP_06789684.1| nitrate reductase [Staphylococcus aureus A9754]
 gi|297209784|ref|ZP_06926180.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300910796|ref|ZP_07128246.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379594|ref|ZP_07362327.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|21205490|dbj|BAB96183.1| nitrate reductase beta chain narH [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49245621|emb|CAG44100.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285125|gb|AAW37219.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|150375308|dbj|BAF68568.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369397|gb|ABX30368.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726281|gb|EES95010.1| nitrate reductase beta chain narH [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727883|gb|EES96612.1| nitrate reductase beta chain narH [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257844894|gb|EEV68937.1| nitrate reductase, beta subunit [Staphylococcus aureus A9635]
 gi|257861091|gb|EEV83906.1| nitrate reductase, beta subunit [Staphylococcus aureus A5948]
 gi|259163064|gb|EEW47625.1| nitrate reductase beta chain narH [Staphylococcus aureus D30]
 gi|282594327|gb|EFB99313.1| nitrate reductase, beta subunit [Staphylococcus aureus A9765]
 gi|294824318|gb|EFG40742.1| nitrate reductase [Staphylococcus aureus A9754]
 gi|296885457|gb|EFH24394.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300887776|gb|EFK82971.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302334025|gb|ADL24218.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302752267|gb|ADL66444.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304341770|gb|EFM07676.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315197408|gb|EFU27745.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139102|gb|EFW30984.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320142521|gb|EFW34330.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329726745|gb|EGG63206.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329730436|gb|EGG66826.1| nitrate reductase, beta subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 519

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|325969959|ref|YP_004246150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324025197|gb|ADY11956.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 142

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           NC  C    CV+ C        +  + I    C+ C  C   CP  A+ P TE  ++ 
Sbjct: 57  NCRHCTEPLCVKSCIAGAITSKDGVIVIDQSRCVLCYSCIMACPYGALMPSTEGVMQK 114


>gi|313904957|ref|ZP_07838328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
          cellulosolvens 6]
 gi|313470214|gb|EFR65545.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
          cellulosolvens 6]
          Length = 56

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V++++C+ C    C   CPV    +G+    I  D C+DCG CE  CP  AI
Sbjct: 1  MARVISDDCVSC--GTCEGECPVGAISQGDGKFVIDADSCVDCGACEAACPTGAI 53


>gi|183220758|ref|YP_001838754.1| putative molybdopterin oxidoreductase iron-sulfur binding subunit
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910859|ref|YP_001962414.1| Fe-S-cluster-containing hydrogenase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775535|gb|ABZ93836.1| Fe-S-cluster-containing hydrogenase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779180|gb|ABZ97478.1| Putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 1042

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  C  VCPV    +  E    +  + C+    C   CP    + +       
Sbjct: 866 CQHCDNAPCETVCPVAATVHSSEGTNDMVYNRCVGTRYCSNNCPYKVRRFNWLEHWNE 923


>gi|153003711|ref|YP_001378036.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027284|gb|ABS25052.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 1007

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
            C+ C+   C  VCPV+   +  E    +  + C+    C   CP  
Sbjct: 838 ACVHCEMAPCEYVCPVNATVHSDEGLNEMVYNRCVGTRYCSNNCPYK 884


>gi|78357974|ref|YP_389423.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220379|gb|ABB39728.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit,
           putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 255

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  CV VCPV    + E    +      CI C  C   CP  A   +    +  
Sbjct: 74  PCQQCGNPPCVSVCPVIATDKNEEGGIVSQVTPRCIGCRYCMAACPYHARYFNWYDPIWP 133


>gi|298206849|ref|YP_003715028.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Croceibacter atlanticus HTCC2559]
 gi|83849483|gb|EAP87351.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Croceibacter atlanticus HTCC2559]
          Length = 1037

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     +   
Sbjct: 864 CQHCNHAPCETVCPVAATSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNK--- 920

Query: 68  KINSEY 73
             N E+
Sbjct: 921 --NDEF 924


>gi|307267356|ref|ZP_07548851.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917614|gb|EFN47893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 154

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    CI C   +CV VCP D     +    I P++C DCG C   CPV AI
Sbjct: 104 VDESVCIGC--GNCVRVCPFDAIELKDGIAYIDPNKCRDCGRCIDICPVGAI 153


>gi|303245642|ref|ZP_07331925.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492905|gb|EFL52770.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 491

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +    C  C    C  VCPV+C    +     I    CI CG C  +C  D+I
Sbjct: 435 TYTIDPAKCTGC--GLCTRVCPVECISGTKKQPHTIDTTRCIKCGACYDKCKFDSI 488


>gi|303243539|ref|ZP_07329881.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486100|gb|EFL49022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 456

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 20/82 (24%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECIDCG 44
           YV  + C  C    C   CP                  V           I  + CI CG
Sbjct: 38  YVDEDTCTGC--GACAGACPIEVPNGFDLGLGTRKAIYVPFAQAVPLVYTIDMEHCIHCG 95

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +CE  C   AI+ + +P    +
Sbjct: 96  LCEKACGPGAIRYNQKPKEIKF 117



 Score = 34.6 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           V    C  C+   C ++CP          G     +    C  CG C   CP  A++
Sbjct: 377 VDENVCGGCE--ICGKMCPYHAISYKEIDGHLIAQVDDVACKGCGACAGACPSGAMQ 431


>gi|300867907|ref|ZP_07112547.1| XRE family transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300334044|emb|CBN57723.1| XRE family transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 534

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECP 51
          M+Y +T  CI C    C  +CP +     ++   I P+ C +C       C   CP
Sbjct: 1  MSYSITNRCIQCD--TCEPLCPTEAIKRKDDKYWIDPNLCDNCENYSAPQCVICCP 54


>gi|298695659|gb|ADI98881.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 511

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 169 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 227

Query: 59  TEPGLEL 65
            +     
Sbjct: 228 WKTNKAE 234


>gi|295677023|ref|YP_003605547.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1002]
 gi|295436866|gb|ADG16036.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1002]
          Length = 412

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D     +N   +  D C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAIDN 66


>gi|268610306|ref|ZP_06144033.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Ruminococcus flavefaciens FD-1]
          Length = 56

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+++++CI C    C   CPV    EG+    I  D C++CG C   CPV A   +
Sbjct: 1  MAYIISDDCISC--GACAGECPVSAISEGDGKYQIDADACVECGACAGVCPVGAPNAE 56


>gi|322417864|ref|YP_004197087.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320124251|gb|ADW11811.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 368

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C++ C        E    I P  C+ C  C   C   AI         L ++
Sbjct: 195 CNGC--GVCLKSCAHAAIAIIEGSARIDPAACVGCSRCITACLKKAINIQWNESASLVMR 252

Query: 69  INSEYAT 75
             +EYA 
Sbjct: 253 KMAEYAK 259


>gi|253698761|ref|YP_003019950.1| molybdopterin oxidoreductase Fe4S4 region [Geobacter sp. M21]
 gi|251773611|gb|ACT16192.1| molybdopterin oxidoreductase Fe4S4 region [Geobacter sp. M21]
          Length = 966

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C  VCPV    +  E   A   + CI    C   CP    + + 
Sbjct: 802 CQHCDAAPCEPVCPVFAAVHSEEGLNAQIYNRCIGTRYCSNNCPYKVRRFNW 853



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            ++ P     +    +AI    CI CG C   C 
Sbjct: 726 EDMYPAHEHKKHRWGMAIDLQRCIGCGACAVACY 759


>gi|223985163|ref|ZP_03635255.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM
           12042]
 gi|223962872|gb|EEF67292.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM
           12042]
          Length = 278

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 2/73 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    CV  CP          +      C+ C  C   CP  A    +E   E  L 
Sbjct: 44  CDHC--GQCVAGCPAGALTLHAGKVVWEESRCVGCDQCIHVCPHHASCKVSELTPEALLD 101

Query: 69  INSEYATQWPNIT 81
             +E       IT
Sbjct: 102 RVAETFPFIQGIT 114


>gi|15922172|ref|NP_377841.1| hypothetical protein ST1859 [Sulfolobus tokodaii str. 7]
 gi|15622961|dbj|BAB66950.1| 620aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 620

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + CI CK  DC   CPV        F+        +C+  G C   CP + I       
Sbjct: 552 PQQCIECKTVDCANACPVGLTDMRGEFIRKGEFRSIKCVGIGECIDACPYNNIFIYDVRN 611

Query: 63  LEL 65
              
Sbjct: 612 WIK 614


>gi|283767481|ref|ZP_06340396.1| nitrate reductase 1 beta subunit [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461360|gb|EFC08444.1| nitrate reductase 1 beta subunit [Staphylococcus aureus subsp.
           aureus H19]
          Length = 519

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|269963060|ref|ZP_06177396.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3]
 gi|269832192|gb|EEZ86315.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3]
          Length = 553

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPEDTQKFIE 247



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCEKACP 462


>gi|239623412|ref|ZP_04666443.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522378|gb|EEQ62244.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 241

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MT  +  E CI C    C + C + C       ++I+ +EC+DCGVC       A     
Sbjct: 1  MTVRINKEKCIGC--GRCTDYCMLGCITRDGKKVSINEEECVDCGVCLRAGVCAADAIYM 58

Query: 60 EPGLELW 66
                +
Sbjct: 59 PDENFEY 65


>gi|206580557|ref|YP_002240669.1| glycyl-radical enzyme activating protein family [Klebsiella
           pneumoniae 342]
 gi|206569615|gb|ACI11391.1| glycyl-radical enzyme activating protein family [Klebsiella
           pneumoniae 342]
          Length = 315

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
           + CI C   DCV VCP    Y     GE    +  ++ CI C  CE  C  +A  I    
Sbjct: 58  DKCINC--GDCVSVCPAGIHYRAEENGEMKHFVDRNKDCIGCRKCEEICTQNALDIMGKD 115

Query: 60  EPGLELWLKINSEY 73
               EL   I  +Y
Sbjct: 116 VTVSELMEIIMQDY 129


>gi|189426182|ref|YP_001953359.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
 gi|189422441|gb|ACD96839.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
          Length = 590

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V + C+ C    C + CPVD   +E      +  ++C  C  C   C   AI
Sbjct: 539 IVEDKCVKC--GACKKACPVDAIVWEKGQIAYLDKEKCTKCKSCYDACRFMAI 589


>gi|71908216|ref|YP_285803.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
           RCB]
 gi|71847837|gb|AAZ47333.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
           aromatica RCB]
          Length = 231

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   CV  CPV+  +  E   F+    + CI C  C   CP +A   
Sbjct: 70  CNHCEDPPCVRNCPVEATFVVEDGGFVLQRYERCIGCRSCMAACPYNARFM 120


>gi|50120188|ref|YP_049355.1| electron transport protein HydN [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610714|emb|CAG74159.1| electron transport protein [Pectobacterium atrosepticum SCRI1043]
          Length = 181

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C  VCP       ++F+ +    CI C  C   CP   ++  + P ++  +
Sbjct: 58  CRQCEDAPCANVCPNGAITREKDFIHVQQARCIGCKTCVVACPYGVMEVVSRPVMKKRI 116


>gi|49484612|ref|YP_041836.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282906739|ref|ZP_06314587.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295428983|ref|ZP_06821605.1| nitrate reductase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589522|ref|ZP_06948163.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49242741|emb|CAG41466.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282329638|gb|EFB59159.1| nitrate reductase beta subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295126742|gb|EFG56386.1| nitrate reductase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297578033|gb|EFH96746.1| respiratory nitrate reductase, beta subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194889|gb|EFU25277.1| nitrate reductase beta chain [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 519

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase subunit D [Archaeoglobus fulgidus DSM
           4304]
 gi|3122769|sp|O28002|RPOD_ARCFU RecName: Full=DNA-directed RNA polymerase subunit D
 gi|2648239|gb|AAB88973.1| DNA-directed RNA polymerase, subunit D (rpoD) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 264

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           VV ENC  C   DC+E CP + F +  + +   +   C  CG C   C ++AI
Sbjct: 168 VVNENCNGC--GDCIEACPRNVFEKDGDKVRVKNVMACSMCGECVEVCEMNAI 218


>gi|11466496|ref|NP_044745.1| NADH dehydrogenase subunit 8 [Reclinomonas americana]
 gi|6225784|sp|O21233|NDUS8_RECAM RecName: Full=NADH-ubiquinone oxidoreductase subunit 8
 gi|2258326|gb|AAD11860.1| NADH dehydrogenase subunit 8 [Reclinomonas americana]
          Length = 162

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAICPAQAITIESEPRIDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E+A  T    +  K++ L +  + +  
Sbjct: 118 VEGP----------NFEFATETHEELLYDKEKLLQNGDRWETE 150


>gi|298674384|ref|YP_003726134.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298287372|gb|ADI73338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 353

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  E C+ C+   C+++C        +    +  + C   G C   CP  AI
Sbjct: 185 PTIEPEKCVGCE--TCIDMCAWGALKMEDGKAVVDTELCKGEGFCVESCPEGAI 236


>gi|294634155|ref|ZP_06712708.1| nitrate reductase, beta subunit [Streptomyces sp. e14]
 gi|292829839|gb|EFF88195.1| nitrate reductase, beta subunit [Streptomyces sp. e14]
          Length = 466

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+ E    + +  D C     C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKREEDGIVLVDEDRCRGWRFCVSGCPYKKVYF 232


>gi|281179727|dbj|BAI56057.1| formate hydrogenlyase subunit [Escherichia coli SE15]
          Length = 203

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAITRVDGAVHLNESLCVSCKLCGIACPFGAIEF 99


>gi|261345710|ref|ZP_05973354.1| cytochrome c nitrite reductase, Fe-S protein [Providencia
           rustigianii DSM 4541]
 gi|282566197|gb|EFB71732.1| cytochrome c nitrite reductase, Fe-S protein [Providencia
           rustigianii DSM 4541]
          Length = 223

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+H  CV+VCP    +  +    + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCEHAPCVDVCPTGASFIDKATGIVDVNPDLCVGCQYCIAACPYR 138


>gi|218779911|ref|YP_002431229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761295|gb|ACL03761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  E C  C   DC E C V    Y+ +    +  D CI CG+C   CP +AI
Sbjct: 271 AVVDAELCAAC--GDCEERCQVLAITYDDDGIAVVDEDRCIGCGLCVTTCPTEAI 323


>gi|126459791|ref|YP_001056069.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249512|gb|ABO08603.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum calidifontis JCM 11548]
          Length = 593

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V  + C+ C    C  V  C       G     I P  C+ CGVC   CPV AIK   E
Sbjct: 526 FVDVDKCVSC--GICYNVLKCSAISKASGG-KAYIDPALCVGCGVCAEVCPVGAIKG--E 580

Query: 61  PGLELWLKI 69
                WL++
Sbjct: 581 GDRAKWLEV 589



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
            Y+    C+ C    C EVCPV       +  
Sbjct: 555 AYIDPALCVGC--GVCAEVCPVGAIKGEGDRA 584


>gi|157370665|ref|YP_001478654.1| electron transport protein HydN [Serratia proteamaculans 568]
 gi|157322429|gb|ABV41526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 180

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP          + +  + CI C  C   CP  A++  T P
Sbjct: 58  CRQCEDAPCSNVCPNGAISRTNGMVLVMQERCIGCKTCVVACPYGAMEVITRP 110


>gi|91780908|ref|YP_556115.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
 gi|91693568|gb|ABE36765.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
          Length = 414

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D     +N   +  D C  C  C   CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDDNNYVVKADVCNGCMACVSPCPTGAIDN 66


>gi|89896196|ref|YP_519683.1| hypothetical protein DSY3450 [Desulfitobacterium hafniense Y51]
 gi|219668013|ref|YP_002458448.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|89335644|dbj|BAE85239.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538273|gb|ACL20012.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 246

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP----ECPVDAIKPDT 59
          +  E CI C    CV  CP++     +   +I+ + C++CG C       CP  AI    
Sbjct: 3  IDQEKCIGC--GICVSYCPMEAISVADKKASINQEMCVECGTCIRPRVVRCPTKAIYEPY 60

Query: 60 EPGLELWLKINSEYATQ 76
          E       ++   ++  
Sbjct: 61 EQIKGTPREVRRFFSDP 77


>gi|322615434|gb|EFY12354.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618494|gb|EFY15383.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622094|gb|EFY18944.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627165|gb|EFY23957.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631125|gb|EFY27889.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637657|gb|EFY34358.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642468|gb|EFY39069.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643657|gb|EFY40211.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648271|gb|EFY44731.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654683|gb|EFY51003.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659643|gb|EFY55886.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662148|gb|EFY58364.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666106|gb|EFY62284.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672526|gb|EFY68637.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675955|gb|EFY72026.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680440|gb|EFY76478.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684666|gb|EFY80670.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194656|gb|EFZ79847.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323201742|gb|EFZ86806.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206256|gb|EFZ91218.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213267|gb|EFZ98069.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215638|gb|EGA00382.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222060|gb|EGA06446.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227927|gb|EGA12081.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229096|gb|EGA13225.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236294|gb|EGA20370.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237586|gb|EGA21647.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241748|gb|EGA25777.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248105|gb|EGA32042.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254565|gb|EGA38376.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258375|gb|EGA42052.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259655|gb|EGA43289.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265928|gb|EGA49424.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270370|gb|EGA53818.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 223

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|307596266|ref|YP_003902583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307551467|gb|ADN51532.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 445

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 2   TYVVTENCI---LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           TY     C     C   +CV  CP +      N + I+   CI+CG+C   CP  A+   
Sbjct: 104 TYF-ENACRARFGC--GECVNACPANAISIVNNRVTINESACIECGLCVSRCPTGALAMV 160

Query: 59  TEPGLELWLKINS 71
                E    +N 
Sbjct: 161 GADDNEYVALLNK 173



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAIKPD 58
           +V    C  C    C   CP   F  G +     L ++  +CI CG C   CP  AI  D
Sbjct: 309 HVDDVKCSFC--GVCFAKCPERAFDVGRDGNKTVLKLNNLKCIGCGYCARLCPEKAITVD 366


>gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 638

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  E C  C    C   CP       +     I   +CI C +C   C  +A+       
Sbjct: 576 IDPEACTGC--HACWRKCPQQAISGEKKKPHVIDQAKCIKCSICYDACKFNAVVVKPNKK 633

Query: 63  LEL 65
            E 
Sbjct: 634 QEP 636


>gi|301058345|ref|ZP_07199378.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [delta proteobacterium NaphS2]
 gi|300447581|gb|EFK11313.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [delta proteobacterium NaphS2]
          Length = 594

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V+ E C  C    C EVCP +      + +   A++   C  CG C  EC  DAI  
Sbjct: 380 VIEEKCKAC--GKCAEVCPYNAITVDVKRKIPAAVNTAACAGCGTCAAECRFDAIIM 434



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 23/84 (27%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID-- 42
           YV  + C  C   DC  VCPV    E                        I+ +EC+   
Sbjct: 38  YVDEKECTAC--GDCATVCPVIRPDEFNLGLSSRRAIYSPFPQAVPSAYVINVNECLGHN 95

Query: 43  ---CGVCEPECPVDAIKPDTEPGL 63
              C  C+  C    I        
Sbjct: 96  PVVCAKCKDACDKGCIDFHMSDQE 119


>gi|262045078|ref|ZP_06018119.1| pyruvate-formate lyase-activating enzyme [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259037593|gb|EEW38823.1| pyruvate-formate lyase-activating enzyme [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 315

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
           + CI C   DCV VCP    Y     GE    +  ++ CI C  CE  C  +A  I    
Sbjct: 58  DKCINC--GDCVSVCPAGIHYRAEENGEMKHFVDRNKDCIGCRKCEEICTQNALDIMGKD 115

Query: 60  EPGLELWLKINSEY 73
               EL   I  +Y
Sbjct: 116 VTVSELMEIIMQDY 129


>gi|238755284|ref|ZP_04616628.1| Electron transport protein hydN [Yersinia ruckeri ATCC 29473]
 gi|238706518|gb|EEP98891.1| Electron transport protein hydN [Yersinia ruckeri ATCC 29473]
          Length = 181

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCP       ++ + +  + CI C  C   CP  A++  T+P    
Sbjct: 58  CRQCEDAPCANVCPNGAIARIDDHIQVMQERCIGCKTCVVACPYGAMEVVTKPIFRQ 114


>gi|204926813|ref|ZP_03218015.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323478|gb|EDZ08673.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 223

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|163732050|ref|ZP_02139496.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149]
 gi|161394348|gb|EDQ18671.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149]
          Length = 164

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 32/101 (31%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K   L +  + +  
Sbjct: 120 V--EGPNFEFSTETREEL------YYDKDRLLANGERWEAE 152


>gi|52549085|gb|AAU82934.1| hypothetical protein GZ23H9_29 [uncultured archaeon GZfos23H9]
          Length = 103

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V    C+ C    C EVC        +    +    CI C  C   CP  AI+
Sbjct: 14 VDETLCVGC--GKCTEVCWAGAIRIIDKKAVVDFSRCICCTACVRACPKGAIQ 64


>gi|87200306|ref|YP_497563.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM
           12444]
 gi|115502536|sp|Q2G5Z4|NUOI_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|87135987|gb|ABD26729.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM
           12444]
          Length = 161

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAEPREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  K +
Sbjct: 117 V--EGPNFEYATETREEL------LYDKAKLLSNGDKWE 147


>gi|103486787|ref|YP_616348.1| NADH dehydrogenase subunit I [Sphingopyxis alaskensis RB2256]
 gi|123379893|sp|Q1GTK7|NUOI_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|98976864|gb|ABF53015.1| NADH-quinone oxidoreductase, chain I [Sphingopyxis alaskensis
           RB2256]
          Length = 162

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  K +
Sbjct: 118 V--EGPNFEYATETREEL------LYDKAKLLANGDKWE 148


>gi|322706310|gb|EFY97891.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 247

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 22/82 (26%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 124 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 181

Query: 56  KPDTEPGLELWLKINSEYATQW 77
                         N+EYAT+ 
Sbjct: 182 VESP----------NAEYATET 193


>gi|323344712|ref|ZP_08084936.1| ferredoxin [Prevotella oralis ATCC 33269]
 gi|323093982|gb|EFZ36559.1| ferredoxin [Prevotella oralis ATCC 33269]
          Length = 55

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++CI C    C++ CPV    EG     I+PD C +CG C   CP +AI
Sbjct: 1  MAYVISDDCIAC--GSCIDECPVGAISEGN-KYNINPDMCTECGTCADVCPNEAI 52


>gi|312879273|ref|ZP_07739073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310782564|gb|EFQ22962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 158

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +   C  C+   C++VC     Y   + +  +  ++CI C +C   CP   I    E
Sbjct: 48  IPMTCFQCEDAACLKVCKTGALYRDADGVVQVDREKCIGCRMCVMACPFGNILYHRE 104


>gi|302339374|ref|YP_003804580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
          smaragdinae DSM 11293]
 gi|301636559|gb|ADK81986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
          smaragdinae DSM 11293]
          Length = 56

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++C  C    C   CPV+   E ++   I PD+C  CG C   CPV+AI  D
Sbjct: 1  MAYKITDDCTNC--GACEAECPVEAISEKDDHRWIDPDQCTSCGTCAEVCPVEAILAD 56


>gi|293376708|ref|ZP_06622931.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
 gi|292644665|gb|EFF62752.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
          Length = 424

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          ++CI C  T C+ VCP +        + +  ++C++CG C   C V A     E   E
Sbjct: 13 DDCIGC--TRCMRVCPTEAIRIVNGKVKLIEEKCVNCGACFTTCHVHAFDLKKERLEE 68


>gi|237747572|ref|ZP_04578052.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229378934|gb|EEO29025.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 136

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          C  C++  CV VCP +      + + +  + CI C  C   CP  A++  ++P  + 
Sbjct: 13 CRQCENAPCVNVCPTNALVYSADTVQLIKERCIGCQTCVLACPFGAMEIVSKPVEQA 69


>gi|237752820|ref|ZP_04583300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229376309|gb|EEO26400.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 189

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           V  +C +C+HT CV VCP    +  EN +  I   +C+ C  C   CP +A   + E
Sbjct: 55  VRHSCEMCEHTPCVTVCPTHASFMDENGIVDIDASQCVGCLYCVVACPYNARYVNPE 111


>gi|170748469|ref|YP_001754729.1| NADH dehydrogenase subunit I [Methylobacterium radiotolerans JCM
           2831]
 gi|226737401|sp|B1LUM8|NUOI_METRJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|170654991|gb|ACB24046.1| NADH-quinone oxidoreductase, chain I [Methylobacterium
           radiotolerans JCM 2831]
          Length = 162

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E  ++   E       +  K++ L +  + +  
Sbjct: 117 IV--EGPNFEFSVETREEL------LYDKQKLLLNGDRWERE 150


>gi|218780182|ref|YP_002431500.1| nitrite and sulphite reductase 4Fe-4S region [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761566|gb|ACL04032.1| Putative dissimilatory sulfite reductase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 287

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +NC+ C   DC E CP       ++     P  C  C  C   CP D I  + +
Sbjct: 175 DNCVDC--GDCAESCPDQAIIMKDDRPVYDPHACQGCFNCSQACPADCISLEEK 226


>gi|157373638|ref|YP_001472238.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316012|gb|ABV35110.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 236

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA   + E
Sbjct: 106 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIGACPYDARFINKE 160


>gi|121535425|ref|ZP_01667236.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306024|gb|EAX46955.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 191

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           ++C++C ++ CV VCP    Y  ++ +  I   +C+ C  C   CP  A
Sbjct: 60  QSCVMCDNSPCVSVCPTGASYTNKDGVNLIDEKKCVGCKYCVTACPYQA 108


>gi|313672151|ref|YP_004050262.1| molybdopterin oxidoreductase 4fe-4S ferredoxin [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938907|gb|ADR18099.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 185

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  C  VCP    Y+    +  +  D+CI C  C   CP DA
Sbjct: 63  CQHCENAPCQSVCPTQATYKTPEGVVLVDYDKCILCKACMTACPYDA 109


>gi|317153808|ref|YP_004121856.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944059|gb|ADU63110.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 275

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDT 59
            C+ C H  CV VCPV    + E    +      CI C  C   CP  A   + 
Sbjct: 89  PCMQCGHPACVPVCPVVATDKNEEGGIVSQIYPRCIGCRYCMAACPYHARYFNW 142


>gi|289191512|ref|YP_003457453.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp.
           FS406-22]
 gi|288937962|gb|ADC68717.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp.
           FS406-22]
          Length = 238

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +    C LC    C+ VCP     + ++F+ I   +C+ CG C+  CP +AI    E
Sbjct: 146 IDKNKCKLCLK--CINVCPNGAIAKRDDFVEISLPKCLGCGNCKKVCPYNAIIEGKE 200


>gi|257093872|ref|YP_003167513.1| hydrogenase 2 protein HybA [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046396|gb|ACV35584.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 344

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV  CPV    +      +A   + C+ C  C   CP    K   +     
Sbjct: 126 SCMHCADPSCVSACPVTAMTKDPKTGIVAYDAEACVGCRYCVVACPFGIPKYQYDSPTGK 185


>gi|253687199|ref|YP_003016389.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753777|gb|ACT11853.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 232

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 99  SCQHCENPPCVAVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 146


>gi|212550384|ref|YP_002308701.1| ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
          genomovar. CFP2]
 gi|212548622|dbj|BAG83290.1| ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
          genomovar. CFP2]
          Length = 55

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+TE+CI C    C++ CPV+   EG+   +I  + C +CG C   CP +AI
Sbjct: 1  MAYVITEDCIAC--GTCIDECPVEAISEGD-IYSIDANNCTECGSCASVCPSEAI 52


>gi|205355049|ref|YP_002228850.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274830|emb|CAR39890.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
          Length = 223

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|187776485|ref|ZP_02803043.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4196]
 gi|188025284|ref|ZP_02777379.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4113]
 gi|189010720|ref|ZP_02808951.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4076]
 gi|189402653|ref|ZP_02783828.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4401]
 gi|189403629|ref|ZP_02796672.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4486]
 gi|189406311|ref|ZP_02827703.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC508]
 gi|208810612|ref|ZP_03252488.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4206]
 gi|208816728|ref|ZP_03257848.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4045]
 gi|208818194|ref|ZP_03258514.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4042]
 gi|187766868|gb|EDU30712.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4196]
 gi|188013788|gb|EDU51910.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4113]
 gi|188998816|gb|EDU67802.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4076]
 gi|189354429|gb|EDU72848.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4401]
 gi|189359629|gb|EDU78048.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4486]
 gi|189375368|gb|EDU93784.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC508]
 gi|208725128|gb|EDZ74835.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4206]
 gi|208731071|gb|EDZ79760.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4045]
 gi|208738317|gb|EDZ85999.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4042]
 gi|326343589|gb|EGD67351.1| NrfC-like protein [Escherichia coli O157:H7 str. 1125]
          Length = 184

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|168235271|ref|ZP_02660329.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738110|ref|YP_002116600.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713612|gb|ACF92833.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291578|gb|EDY30930.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 157

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQALRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|195952715|ref|YP_002121005.1| Selenate reductase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932327|gb|ACG57027.1| Selenate reductase [Hydrogenobaculum sp. Y04AAS1]
          Length = 382

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           C  C +  C+  CP    Y+   +  + I P+ C     C   CP  
Sbjct: 158 CNHCSYPACLAACPRKAIYKRQEDGIVLIDPERCEGYQECVRACPYK 204


>gi|91977347|ref|YP_570006.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB5]
 gi|123748991|sp|Q135Y4|NUOI2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|91683803|gb|ABE40105.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB5]
          Length = 162

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K   L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKARLLANGDRWEREIAK 153


>gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 624

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +    C  C    C   CPV     + +    I   +CI CG C   C   AI
Sbjct: 571 IDASLCKGCSK--CARSCPVGAITGKVKEPFVIDQSKCIKCGACIETCAFHAI 621


>gi|331003152|ref|ZP_08326661.1| hypothetical protein HMPREF0491_01523 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412938|gb|EGG92316.1| hypothetical protein HMPREF0491_01523 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 252

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + CI CK   C + CPV       +      +EC  C  C   CP  AI  
Sbjct: 183 VNKDLCIGCKL--CEKKCPVGAIIMEGDHPVWKDEECEMCLGCLHRCPKFAISY 234


>gi|323968437|gb|EGB63843.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327252787|gb|EGE64441.1| hypothetical protein ECSTEC7V_2032 [Escherichia coli STEC_7v]
          Length = 184

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +     +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDMQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|320174121|gb|EFW49286.1| NrfC-like protein [Shigella dysenteriae CDC 74-1112]
          Length = 184

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP +  +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTEASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|319942594|ref|ZP_08016903.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
 gi|319803890|gb|EFW00812.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
          Length = 193

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  C+ VCP            +   P  C+ CG C   CP DA    
Sbjct: 67  CQQCENAPCITVCPFGANSHDPETGQVKTDPSRCVGCGYCVTACPYDARWMH 118


>gi|313203348|ref|YP_004042005.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Paludibacter propionicigenes WB4]
 gi|312442664|gb|ADQ79020.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Paludibacter propionicigenes WB4]
          Length = 443

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +    CI  K   CV+ CP              I+   CI  G C   CPV+AI
Sbjct: 55  PVIDQNRCI--KSGACVDACPEHDILGIVNGKATVINASHCIGHGACFRACPVEAI 108


>gi|312143460|ref|YP_003994906.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium sp. 'sapolanicus']
 gi|311904111|gb|ADQ14552.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium sp. 'sapolanicus']
          Length = 331

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+ CPVD     +N   I  ++C+DCG+C  +CP   I+   E    + + 
Sbjct: 217 CIACSL--CVKACPVDAIEMKDNLAVIDYEKCVDCGICAEKCPTGTIEFQGERIKNVEIN 274

Query: 69  INS 71
            N 
Sbjct: 275 DNC 277



 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +NC+ C  T C + CPVD    E +    I  + CI CG+C   C VDA+
Sbjct: 273 INDNCVGC--TLCAKACPVDAVEGEIKKLHKIDQNLCIQCGLCYEACNVDAV 322



 Score = 33.4 bits (75), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           +C+     DC  +CP D     +N L  I PD C  CG C  ECP +
Sbjct: 141 SCMG--FGDCKVICPFDAIIMNDNGLPEIDPDVCTGCGKCIEECPRN 185


>gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 597

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +    C  C  T C   CPV       +N   I+  +CI CG C  +C   AI
Sbjct: 544 IDPAKCKGC--TACARACPVSAISGTLKNPHVINQLDCIKCGTCVEKCKFGAI 594


>gi|187935352|ref|YP_001886203.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridium botulinum B str. Eklund 17B]
 gi|187723505|gb|ACD24726.1| nitroreductase family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 273

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V  E CI CK   C+  CPV      ++   I  + CI CG C   CP +A+     
Sbjct: 1   MFKVNKEKCISCK--QCINDCPVSDILLIDSKANIKNEACIKCGHCIAICPTNAVSTADY 58

Query: 61  PGLELWLKINSEY---ATQWPNITTKKESLPSAAKMDGVKQKYEK 102
              E+      E+   A    N    + S+     M   K+K  K
Sbjct: 59  NMDEVKEYNKDEFFIEADNLLNFIKFRRSVRKFKDMKVEKEKISK 103


>gi|78044751|ref|YP_359335.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996866|gb|ABB15765.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 198

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + V   C+ C+   C+ +CP    +  EN  + ++ D C+ C  C   CP  A     + 
Sbjct: 54  HFVPTICMHCEEPACLTICPSQATFRDENGSILVNYDTCLGCKACMAACPYGARYVYDKN 113

Query: 62  GLELWLKINSEYATQ 76
            +    +I+ E +  
Sbjct: 114 DVAKNREIHGELSQH 128


>gi|14521449|ref|NP_126925.1| putative ATPase RIL [Pyrococcus abyssi GE5]
 gi|5458668|emb|CAB50155.1| ABC transporter ATP-binding protein [Pyrococcus abyssi GE5]
          Length = 593

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E      I    C  CG+C  +CP +AI
Sbjct: 13 DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 70



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 3/56 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ E  C  C    CV  CP +          +  D     GV         I  D
Sbjct: 49  IIQEASCTGC--GICVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKD 102


>gi|89092706|ref|ZP_01165659.1| electron transport complex protein RnfB [Oceanospirillum sp. MED92]
 gi|89083218|gb|EAR62437.1| electron transport complex protein RnfB [Oceanospirillum sp. MED92]
          Length = 198

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I  
Sbjct: 108 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIETECTGCDLCVEPCPVDCIDM 162


>gi|328952283|ref|YP_004369617.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfobacca
          acetoxidans DSM 11109]
 gi|328452607|gb|AEB08436.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfobacca
          acetoxidans DSM 11109]
          Length = 396

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M+ ++  E C  C    C++ CP    Y  +  L +    C  CG C   C   A+
Sbjct: 1  MSVIINLERCTGC--GQCLDACPFGLLYLLDGRLMVDDG-CTLCGACVEVCEYGAL 53


>gi|322613949|gb|EFY10885.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620318|gb|EFY17186.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625323|gb|EFY22150.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630010|gb|EFY26783.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634200|gb|EFY30935.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635899|gb|EFY32608.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643073|gb|EFY39648.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644596|gb|EFY41132.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650838|gb|EFY47230.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652998|gb|EFY49333.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659961|gb|EFY56201.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663294|gb|EFY59498.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668780|gb|EFY64933.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674417|gb|EFY70510.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678375|gb|EFY74436.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680881|gb|EFY76915.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687183|gb|EFY83156.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323192142|gb|EFZ77375.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200646|gb|EFZ85720.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201356|gb|EFZ86422.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206756|gb|EFZ91710.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211814|gb|EFZ96646.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216173|gb|EGA00901.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220396|gb|EGA04850.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226253|gb|EGA10468.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228373|gb|EGA12504.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234194|gb|EGA18282.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237179|gb|EGA21246.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244698|gb|EGA28702.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249179|gb|EGA33097.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250702|gb|EGA34582.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257577|gb|EGA41264.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262286|gb|EGA45847.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266159|gb|EGA49650.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268794|gb|EGA52252.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 157

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|288560652|ref|YP_003424138.1| energy-converting hydrogenase A subunit Q EhaQ
          [Methanobrevibacter ruminantium M1]
 gi|288543362|gb|ADC47246.1| energy-converting hydrogenase A subunit Q EhaQ
          [Methanobrevibacter ruminantium M1]
          Length = 483

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPD---T 59
          +  E CI C    C+ VCP+D  Y+ EN   I  DE C  C +C   CP DAI      +
Sbjct: 20 IDNEKCINCSDKPCLGVCPIDAVYQDENTKLIKLDEHCFGCVLCSNACPYDAIHIKKTLS 79

Query: 60 EPGLELWLKINSEYATQW 77
          EP  E    IN +     
Sbjct: 80 EPIRENVPNINKKLCRAC 97



 Score = 41.1 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEP 61
           VV ENCI C    C++VCP      +G N + I  D  C+ CG+C   C  +AI    + 
Sbjct: 343 VVEENCISC--GLCMDVCPTKSISLDGPNPIKIDTDNSCVYCGLCAEACNFEAI----KL 396

Query: 62  GLELWLKINSEYATQWPNITTKK 84
             E +   N E      ++  ++
Sbjct: 397 AEEFFTNRNHEIFFIKRDLRGRR 419



 Score = 41.1 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C LC+   C++ CPVD     ++ + ++ DECI C  CE  CPV+A
Sbjct: 429 ACQLCE--VCIKNCPVDAMSVEDDMITVNHDECISCRNCEGICPVNA 473



 Score = 38.4 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 4   VVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  + CI C    C  +CP        +      I P  C  C  C   CP  AI  D  
Sbjct: 161 IDHDQCIGC--MTCTRICPSKGAINVGKTNKLPFIDPAYCARCEECMHACPTYAI--DYV 216

Query: 61  PGLELWLKINS 71
              E +   N 
Sbjct: 217 EREEAFESFNK 227



 Score = 38.0 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  C     +       E    I  ++CI CG C   CP DAIK 
Sbjct: 94  CRAC--GACVNACKSGAIHLKSTGGEEMHSEIDENKCIRCGYCFRACPTDAIKY 145



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECIDCGVCEPECPVDA 54
           +    CI C +  C   CP D    GE           L I  D+CI C  C   CP   
Sbjct: 123 IDENKCIRCGY--CFRACPTDAIKYGEILPKTVKEGKTLCIDHDQCIGCMTCTRICPSKG 180

Query: 55  IKPDTEPGLELWLK 68
                +     ++ 
Sbjct: 181 AINVGKTNKLPFID 194


>gi|260462240|ref|ZP_05810484.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium opportunistum
           WSM2075]
 gi|259032100|gb|EEW33367.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium opportunistum
           WSM2075]
          Length = 163

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K   L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKDRLLANGDRWERE 151


>gi|226366128|ref|YP_002783911.1| nitrate reductase beta subunit [Rhodococcus opacus B4]
 gi|226244618|dbj|BAH54966.1| nitrate reductase beta subunit [Rhodococcus opacus B4]
          Length = 552

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDKCRGWRMCVSGCPYKKVYF 232


>gi|150388648|ref|YP_001318697.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149948510|gb|ABR47038.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 56

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y + E+CI C    C   CPVD    G++   I  D CIDCG C   CP DA
Sbjct: 1  MAYKINESCINC--GACEPECPVDVITAGDDIYVIEEDGCIDCGACANVCPTDA 52


>gi|16762644|ref|NP_458261.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144131|ref|NP_807473.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415559|ref|YP_152634.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197250554|ref|YP_002148595.1| protein AegA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197364486|ref|YP_002144123.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213052803|ref|ZP_03345681.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213418298|ref|ZP_03351364.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428116|ref|ZP_03360866.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582428|ref|ZP_03364254.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213615802|ref|ZP_03371628.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213865474|ref|ZP_03387593.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224585465|ref|YP_002639264.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289828329|ref|ZP_06546254.1| protein AegA [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25285317|pir||AF0979 probable electron-transport protein STY4132 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504950|emb|CAD07962.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139768|gb|AAO71333.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129816|gb|AAV79322.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095963|emb|CAR61547.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197214257|gb|ACH51654.1| protein AegA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|224469993|gb|ACN47823.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 157

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|148263283|ref|YP_001229989.1| electron transfer flavoprotein, alpha subunit [Geobacter
          uraniireducens Rf4]
 gi|146396783|gb|ABQ25416.1| electron transfer flavoprotein, alpha subunit [Geobacter
          uraniireducens Rf4]
          Length = 441

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          +   CI C    C   CPVD     +     I+  +CI C  C   CP  AI+ 
Sbjct: 19 IAGKCIAC-GARCQSACPVDAIEMNDAGEPIINESKCIGCVKCVKVCPAQAIEM 71


>gi|325843356|ref|ZP_08167939.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
 gi|325489385|gb|EGC91758.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
          Length = 568

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGLELW 66
          NC  C    CV  CPV           I  + CI CG+C   CP +  K +TE   ++ +
Sbjct: 10 NCKNCY--ACVRACPVQSIKIKNEQAIIMEERCIACGLCLKACPKNVKKIETELEKVKQF 67

Query: 67 LK 68
          +K
Sbjct: 68 IK 69


>gi|296242333|ref|YP_003649820.1| flavoprotein [Thermosphaera aggregans DSM 11486]
 gi|296094917|gb|ADG90868.1| flavoprotein [Thermosphaera aggregans DSM 11486]
          Length = 238

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ENC  C      E CP     +  E  + +   +C+ C  C  +C  +AI  D E
Sbjct: 147 ENCNKCPECVAAESCPTGAMVKDSEWKVRLDISKCVRCRKCLSKCLWNAILFDVE 201


>gi|239906737|ref|YP_002953478.1| nitroreductase family protein [Desulfovibrio magneticus RS-1]
 gi|239796603|dbj|BAH75592.1| nitroreductase family protein [Desulfovibrio magneticus RS-1]
          Length = 273

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 31/96 (32%), Gaps = 20/96 (20%)

Query: 1  MT-YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-----PDECIDCGVCEPECPVDA 54
          M  + VT+ C  C    CV  CP     + +   A H        CI CG C   CP  A
Sbjct: 1  MALFTVTDACTGC--GLCVAACPASLVRQAKPGDAPHALPGREAHCIRCGHCVIACPKRA 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSA 90
                P            A  +  I  K    P+A
Sbjct: 59 FVHALLP------------AEAFEPIRRKDLPTPAA 82


>gi|291287814|ref|YP_003504630.1| electron transport complex, RnfABCDGE type, B subunit
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884974|gb|ADD68674.1| electron transport complex, RnfABCDGE type, B subunit
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 267

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C+   C + CPV           I P  CI CG CE  CP  AI+ 
Sbjct: 213 CIGCRM--CEKKCPVGAIDVDSFLAVIDPAPCIACGECERVCPTGAIRN 259



 Score = 38.4 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V T  C+      CV+ C  D  Y G + +  I PD+C  CG C   CP   IK   E  
Sbjct: 133 VCTYACVG--EGSCVKSCAFDAMYMGSDGIPVIIPDKCTSCGKCVAACPRKLIKLIPEDK 190

Query: 63  L 63
            
Sbjct: 191 P 191



 Score = 33.8 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 18/74 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
             ++ + C  C    CV  CP              V C  + +        +  CI C +
Sbjct: 161 PVIIPDKCTSC--GKCVAACPRKLIKLIPEDKPFVVACMSKDKGPDVKKACKVGCIGCRM 218

Query: 46  CEPECPVDAIKPDT 59
           CE +CPV AI  D+
Sbjct: 219 CEKKCPVGAIDVDS 232


>gi|466365|gb|AAA87056.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
           fructosovorans]
          Length = 490

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +    C  C    C  VCPV+C    +     I    CI CG C  +C  D+I
Sbjct: 434 TYTIDPAKCTGC--GLCTRVCPVECISGTKKQPHTIDTTRCIKCGACYDKCKFDSI 487


>gi|25188163|dbj|BAC24759.1| nitrate reductase beta subunit [Selenomonas ruminantium]
          Length = 472

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C P CP   +  + +     
Sbjct: 180 CNHCLNPACVAACPSGAIYKRDEDGVVLVSQDGCRGWRHCVPACPYKKVYFNWKTNKAE 238


>gi|325958954|ref|YP_004290420.1| methyl-viologen-reducing hydrogenase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325330386|gb|ADZ09448.1| methyl-viologen-reducing hydrogenase delta subunit
           [Methanobacterium sp. AL-21]
          Length = 777

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    C LC    C+++C     +  EN L I P  C  CG C  EC  +AI    +   
Sbjct: 583 VDNSKCNLC--QKCIDICSFKAAFIQENVLKIDPIACNGCGACIAECETNAIDIIGQTDE 640

Query: 64  ELWLKI 69
           +L+  I
Sbjct: 641 QLFAMI 646



 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 20/77 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD------------------CFYEGENFLAIHPDECIDC 43
           +YV+   CI C   +C EVCPV+                        +   I  + C  C
Sbjct: 247 SYVIKGKCISC--GNCAEVCPVEVSDSWNEDMTTRKAIFKPFPQAVPDVYTIDHENCKKC 304

Query: 44  GVCEPECPVDAIKPDTE 60
           G C+  C ++AI  D E
Sbjct: 305 GKCQDVCRMNAIDLDME 321


>gi|168185724|ref|ZP_02620359.1| electron transfer flavoprotein subunit alpha [Clostridium
          botulinum C str. Eklund]
 gi|169296383|gb|EDS78516.1| electron transfer flavoprotein subunit alpha [Clostridium
          botulinum C str. Eklund]
          Length = 396

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ + C+ CK   C   CP            I  D C  CG C   C  +AI
Sbjct: 6  ILKDKCVGCKM--CANTCPFGAIEIENKKAVI-KDNCTLCGSCVSVCKFNAI 54


>gi|163849831|ref|YP_001637874.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|163661436|gb|ABY28803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
          Length = 679

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 281 TGC--TRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPADALMRRL 338



 Score = 38.4 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP            LA     C+ CG+C   CP D I    +   
Sbjct: 521 TEDCTLCL--SCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 578

Query: 64  ELWLK 68
           E W +
Sbjct: 579 EAWGE 583


>gi|89889474|ref|ZP_01200985.1| putative molybdopterin oxidoreductase [Flavobacteria bacterium
           BBFL7]
 gi|89517747|gb|EAS20403.1| putative molybdopterin oxidoreductase [Flavobacteria bacterium
           BBFL7]
          Length = 1023

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 853 CQHCNHAPCETVCPVAASSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNW 904


>gi|91772585|ref|YP_565277.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcoides
           burtonii DSM 6242]
 gi|91711600|gb|ABE51527.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A with
           C-terminal mvhD-like electron transfer domain
           [Methanococcoides burtonii DSM 6242]
          Length = 786

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 19/82 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV+ +NC  C   +C  VCPVD     ++                     I+ D C+ CG
Sbjct: 237 YVIIDNCKGCID-ECARVCPVDISNPFDSGLGKTKAINMPIPQAIPQTAFINSDYCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C+  CP DAI  + +     +
Sbjct: 296 LCKQACPADAIDFNMKAEEFTF 317



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E CI C+   C + C  +     +    +    C  CG C   CPVDAI  
Sbjct: 575 VDAEKCIGCRM--CEDTCNFNTIKVIDGKAVVDEISCQTCGSCSASCPVDAIDM 626


>gi|325845197|ref|ZP_08168505.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
 gi|325488793|gb|EGC91194.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
          Length = 424

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          ++CI C  T C+ VCP +        + +  ++C++CG C   C V A     E   E
Sbjct: 13 DDCIGC--TRCMRVCPTEAIRIVNGKVKLIEEKCVNCGACFTTCHVHAFDLKKERLEE 68


>gi|323254717|gb|EGA38525.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
          Length = 138

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 10 ILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 1  NHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 49


>gi|304437604|ref|ZP_07397559.1| formate dehydrogenase-O, beta subunit [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369417|gb|EFM23087.1| formate dehydrogenase-O, beta subunit [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 271

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC  C    C + CP +     EN  + I+ D+C+ C  CE  CP    K D 
Sbjct: 76  NCFHCGDPACAKGCPENAIDRNENGTVVINQDKCVGCHYCEHNCPWHIPKIDD 128


>gi|281178744|dbj|BAI55074.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE15]
          Length = 208

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK + C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 121 DTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 176


>gi|204928671|ref|ZP_03219870.1| protein AegA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204322104|gb|EDZ07302.1| protein AegA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 157

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|168232507|ref|ZP_02657565.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168818508|ref|ZP_02830508.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469365|ref|ZP_03075349.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194455729|gb|EDX44568.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333269|gb|EDZ20033.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205344438|gb|EDZ31202.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088084|emb|CBY97846.1| Electron transport protein hydN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 157

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|91213088|ref|YP_543074.1| putative electron transport protein YsaA [Escherichia coli UTI89]
 gi|117625856|ref|YP_859179.1| putative electron transport protein YsaA [Escherichia coli APEC O1]
 gi|237703345|ref|ZP_04533826.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91074662|gb|ABE09543.1| putative electron transport protein YsaA [Escherichia coli UTI89]
 gi|115514980|gb|ABJ03055.1| putative electron transport protein YsaA [Escherichia coli APEC O1]
 gi|226902609|gb|EEH88868.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 159

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 53  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 106


>gi|51893738|ref|YP_076429.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857427|dbj|BAD41585.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
          Length = 263

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C  VC         N    I  D+CI C  C+  CP    K + +
Sbjct: 73  CMHCLEPACESVCIAGAIKRQANGAVTIDHDKCIGCRYCQLGCPFGVPKYEYD 125


>gi|21224836|ref|NP_630615.1| nitrate reductase subunit beta NarH [Streptomyces coelicolor A3(2)]
 gi|3560009|emb|CAA20631.1| putative nitrate reductase beta chain NarH [Streptomyces coelicolor
           A3(2)]
          Length = 531

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 186 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 236


>gi|297516469|ref|ZP_06934855.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           OP50]
          Length = 268

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gi|292670527|ref|ZP_06603953.1| formate dehydrogenase beta subunit [Selenomonas noxia ATCC 43541]
 gi|292647937|gb|EFF65909.1| formate dehydrogenase beta subunit [Selenomonas noxia ATCC 43541]
          Length = 273

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC  C    C + CP +     EN  + I+ D+C+ C  CE  CP    K D 
Sbjct: 76  NCFHCGDPACAKGCPENAIDRNENGTVVINQDKCVGCHYCEHNCPWHIPKIDD 128


>gi|262198332|ref|YP_003269541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262081679|gb|ACY17648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 739

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 5/72 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKP---DTEPGL 63
           C  C    CV  C  D      +   + I+   C+ C +C   CP  AI+    +     
Sbjct: 262 CRTCSDQRCVSGCEYDSIKFDASRGEVVINEATCVGCTMCAQSCPFHAIEMVDIEDPSHP 321

Query: 64  ELWLKINSEYAT 75
                  +    
Sbjct: 322 NHRTAFKARLDE 333


>gi|238788854|ref|ZP_04632645.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia frederiksenii
          ATCC 33641]
 gi|238723159|gb|EEQ14808.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia frederiksenii
          ATCC 33641]
          Length = 161

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 38 CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGAMNVVTKQVEVIF 95


>gi|227329153|ref|ZP_03833177.1| putative component of polysulfide reductase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 232

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 99  SCQHCENPPCVAVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 146


>gi|254508907|ref|ZP_05121015.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 16]
 gi|219548146|gb|EED25163.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 16]
          Length = 553

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPDTEPGLE--LWLK 68
           +AI        E   +++
Sbjct: 230 EAIHYALPNPQETQKFVE 247



 Score = 36.9 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +       L     +C+ CG+CE  CP +A+
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGTSPSLQFVEQDCVQCGLCEKACPENAL 466


>gi|200388401|ref|ZP_03215013.1| protein AegA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199605499|gb|EDZ04044.1| protein AegA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 157

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|300937183|ref|ZP_07152035.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300457737|gb|EFK21230.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 157

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|289191613|ref|YP_003457554.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938063|gb|ADC68818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 151

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C++  C E+CPVD  Y  E    +  + CI CG+C   CP+ AI 
Sbjct: 42 CMQCENAPCKEICPVDAIYLKEGIPIVDKERCIACGMCAIACPIGAIF 89


>gi|256784002|ref|ZP_05522433.1| nitrate reductase beta chain NarH [Streptomyces lividans TK24]
 gi|289767883|ref|ZP_06527261.1| nitrate reductase, beta subunit [Streptomyces lividans TK24]
 gi|289698082|gb|EFD65511.1| nitrate reductase, beta subunit [Streptomyces lividans TK24]
          Length = 531

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 186 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 236


>gi|240102324|ref|YP_002958632.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermococcus gammatolerans EJ3]
 gi|239909877|gb|ACS32768.1| Ketoisovalerate oxidoreductase subunit vorD (vorD) [Thermococcus
           gammatolerans EJ3]
          Length = 105

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             ++ E C+ C    C + CP    Y  E+    I  D C  CG+C  ECP +AI  + E
Sbjct: 46  PVIIEEKCVKCY--ICWKFCPEPAIYIREDGYVGIDYDYCKGCGICANECPTNAITMEKE 103

Query: 61  PG 62
             
Sbjct: 104 EK 105


>gi|255100494|ref|ZP_05329471.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42]
          Length = 424

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           ENC+ C    C+  CP+D   +    G+ ++ I  D C+ CGVC   C  ++I 
Sbjct: 293 ENCVKC--GKCITACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNCHKNSIM 344


>gi|219842412|gb|ACL37997.1| NADH dehydrogenase [Ochlerotatus taeniorhynchus]
          Length = 216

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 114 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 171

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 172 VEGP----------NFEFSTETHEELLYNKEKLLCNGDKWESE 204


>gi|218560650|ref|YP_002393563.1| hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia coli
           S88]
 gi|218367419|emb|CAR05201.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli S88]
 gi|294493205|gb|ADE91961.1| 4Fe-4S binding domain protein [Escherichia coli IHE3034]
 gi|307628655|gb|ADN72959.1| putative electron transport protein YsaA [Escherichia coli UM146]
 gi|315285329|gb|EFU44774.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|323949817|gb|EGB45701.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323954882|gb|EGB50662.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 157

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|213421582|ref|ZP_03354648.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 161

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
          +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 29 SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 76


>gi|18313282|ref|NP_559949.1| putative ATPase RIL [Pyrobaculum aerophilum str. IM2]
 gi|18160804|gb|AAL64131.1| RNase L inhibitor homolog [Pyrobaculum aerophilum str. IM2]
          Length = 590

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVD 53
            V  ++C    C H +CV+ CPV+         E      I    CI CG+C  +CP +
Sbjct: 5  AVVDRDSCQPKKCGH-ECVKYCPVNKSGKVVWIDEQLKKAVISEALCIGCGICVHKCPFE 63

Query: 54 AI 55
          AI
Sbjct: 64 AI 65


>gi|86140758|ref|ZP_01059317.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Leeuwenhoekiella blandensis MED217]
 gi|85832700|gb|EAQ51149.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Leeuwenhoekiella blandensis MED217]
          Length = 1027

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +     E   
Sbjct: 854 CQHCNHAPCETVCPVAAIGHGRQGQNQMTYNRCVGTRYCANNCPYKVRRFNWFLYAE--- 910

Query: 68  KINSEY 73
             N E+
Sbjct: 911 --NDEF 914


>gi|86131979|ref|ZP_01050575.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Dokdonia
           donghaensis MED134]
 gi|85817313|gb|EAQ38493.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Dokdonia
           donghaensis MED134]
          Length = 1023

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 850 CQHCNHAPCETVCPVAATSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNW 901


>gi|313894232|ref|ZP_07827797.1| 4Fe-4S binding domain protein [Veillonella sp. oral taxon 158
          str. F0412]
 gi|313441056|gb|EFR59483.1| 4Fe-4S binding domain protein [Veillonella sp. oral taxon 158
          str. F0412]
          Length = 271

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       ++        CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRC--GLCVADCPTGLLVMSDDGPITGKGGCISCGHCISVCPTLALDSDL 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|254976689|ref|ZP_05273161.1| putative nitroreductase [Clostridium difficile QCD-66c26]
 gi|255094072|ref|ZP_05323550.1| putative nitroreductase [Clostridium difficile CIP 107932]
 gi|255518484|ref|ZP_05386160.1| putative nitroreductase [Clostridium difficile QCD-97b34]
 gi|255651604|ref|ZP_05398506.1| putative nitroreductase [Clostridium difficile QCD-37x79]
 gi|306521411|ref|ZP_07407758.1| putative nitroreductase [Clostridium difficile QCD-32g58]
          Length = 258

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 9  VDKELCIGC--GLCKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 58


>gi|218294635|ref|ZP_03495489.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
           aquaticus Y51MC23]
 gi|218244543|gb|EED11067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
           aquaticus Y51MC23]
          Length = 417

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C  VCPV    +  E    +  + C+    C   CP  A + +  P  E ++
Sbjct: 233 CQHCEKAPCEAVCPVAATVHSTEGLNLMVYNRCVGTKYCSANCPYKARRFNFFPYAEAFI 292


>gi|114327958|ref|YP_745115.1| NADH dehydrogenase subunit I [Granulibacter bethesdensis CGDNIH1]
 gi|122327080|sp|Q0BSL0|NUOI_GRABC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114316132|gb|ABI62192.1| NADH-quinone oxidoreductase chain I [Granulibacter bethesdensis
           CGDNIH1]
          Length = 162

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPALAITIEAEPRADGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                P LE   +   E       +  K   L +  + +    +  +  +P
Sbjct: 118 V--EGPNLEFATETREEL------MYNKDRLLANGDRWEPEIARRLELDAP 160


>gi|52549490|gb|AAU83339.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27E7]
          Length = 267

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E    C    C E+C VD          I  D+CI CG C   CP +A+  +TE G 
Sbjct: 115 IDEEKFNGC--GRCAELCRVDAISIVLGKSVIDSDKCISCGWCIRGCPHEAV-IETERGY 171

Query: 64  ELWLKIN 70
            +W+  N
Sbjct: 172 TMWIGGN 178


>gi|78357984|ref|YP_389433.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220389|gb|ABB39738.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 155

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C   CP   F + +   + +    CI CG C   CPV+AI  D E   
Sbjct: 54  CVACNPAPCATACPTGAFSQRKGGGVKVDRSLCIRCGNCAEACPVEAIYIDPEESF 109



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V    CI C   +C E CPV+  Y         P  CI CG C P CP   ++      
Sbjct: 81  VDRSLCIRC--GNCAEACPVEAIYIDPEESF--PYVCIHCGRCVPFCPHACLELADADE 135


>gi|83951754|ref|ZP_00960486.1| NADH dehydrogenase I, I subunit [Roseovarius nubinhibens ISM]
 gi|83836760|gb|EAP76057.1| NADH dehydrogenase I, I subunit [Roseovarius nubinhibens ISM]
          Length = 164

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K+  L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKERLLDNGDRWEAE 152


>gi|332829008|gb|EGK01676.1| hypothetical protein HMPREF9455_02031 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 55

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG+    I PD C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIAC--GTCIDECPVNAISEGD-IYKIDPDTCTDCGTCADACPTEAIHP 54


>gi|303256511|ref|ZP_07342525.1| formate-dependent nitrite reductase, NrfC protein [Burkholderiales
           bacterium 1_1_47]
 gi|331000610|ref|ZP_08324268.1| putative thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
 gi|302860002|gb|EFL83079.1| formate-dependent nitrite reductase, NrfC protein [Burkholderiales
           bacterium 1_1_47]
 gi|329571172|gb|EGG52877.1| putative thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
          Length = 246

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV VCP    +     N + + PD+C+ C  C   CP +
Sbjct: 116 SCQQCLDAPCVRVCPTQAAHRDPETNIVTMDPDKCVGCKYCIAACPYN 163


>gi|295106684|emb|CBL04227.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 174

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPV 52
            V+ +C+ C    C +VCP     +   +  + +  ++CI C  C   CP 
Sbjct: 55  FVSMSCMHCGEPACAKVCPAGAITKRGEDGIVVVDKEKCIGCHYCFFACPF 105


>gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 615

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C    C + CP     ++ +    I P +CI C +C  +C  DAI
Sbjct: 564 VNPDKCTSC--GLCHKNCPSGAVRWKKKQPAEIDPQKCIKCMLCLDKCMFDAI 614


>gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 624

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C    C   CP +    E      I  ++C  CGVC  +C   AI
Sbjct: 569 YVINPELCKGC--GLCARFCPQNAISGERGKPYVIDQEKCAKCGVCVEKCKFKAI 621



 Score = 34.6 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +CP            I+P+ C  CG+C   CP +AI  +
Sbjct: 557 ICPSGMCT-AFKRYVINPELCKGCGLCARFCPQNAISGE 594


>gi|73668425|ref|YP_304440.1| hypothetical protein Mbar_A0886 [Methanosarcina barkeri str.
          Fusaro]
 gi|72395587|gb|AAZ69860.1| hypothetical protein Mbar_A0886 [Methanosarcina barkeri str.
          Fusaro]
          Length = 303

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIKPDTEPGL 63
          E C  C    CV+VC     Y   + + I       CI CG C   CP  AI  +     
Sbjct: 19 EKCKTC--GLCVKVCKGAPIYLENDKVRIDQTRYFGCIGCGHCVAVCPTGAIAVEGRDIS 76

Query: 64 E 64
          +
Sbjct: 77 Q 77


>gi|154248544|ref|YP_001419502.1| NADH dehydrogenase subunit I [Xanthobacter autotrophicus Py2]
 gi|226737417|sp|A7IP99|NUOI_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|154162629|gb|ABS69845.1| NADH-quinone oxidoreductase, chain I [Xanthobacter autotrophicus
           Py2]
          Length = 162

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 117 IV--EGPNFEFAAETREEL------YYDKEKLLANGDRWERE 150


>gi|134300070|ref|YP_001113566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134052770|gb|ABO50741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 272

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
             NCI CK   CV +CP+      +  ++     CI CG C   CP +A   D +  L  
Sbjct: 199 NSNCIDCKL--CVNLCPMGSIDYED--VSKLNGICIKCGACIKNCPTEAKYYDDKDYLRH 254

Query: 66  WLKINSEYATQWPNIT 81
             ++  ++A++    T
Sbjct: 255 KHELEVDFASRREPET 270


>gi|219667674|ref|YP_002458109.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537934|gb|ACL19673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 201

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           Y ++ +C  C + +C  +CP   + +  + + +    +C  CG C   CP +A
Sbjct: 52  YYLSSSCNHCLNPECFRLCPNHAYRKRRDGIVVFDEGKCKGCGTCIRSCPFEA 104


>gi|289422180|ref|ZP_06424037.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289157406|gb|EFD06014.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 595

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI CK   C +  CP   F       +I  ++C+ C VC   CPV AI
Sbjct: 540 VDQDKCIGCKK--CTKTGCPAISFKTDIKKSSIDINKCVGCSVCAQVCPVGAI 590


>gi|255308110|ref|ZP_05352281.1| putative nitroreductase [Clostridium difficile ATCC 43255]
          Length = 258

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 9  VDKELCIGC--GLCKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 58


>gi|255102248|ref|ZP_05331225.1| putative nitroreductase [Clostridium difficile QCD-63q42]
          Length = 258

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 9  VDKELCIGC--GLCKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 58


>gi|163931196|pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor
          Protein From Pyrococcus Abysii
          Length = 607

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E      I    C  CG+C  +CP +AI
Sbjct: 27 DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 84



 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 3/56 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ E  C  C    CV  CP +          +  D     GV         I  D
Sbjct: 63  IIQEASCTGC--GICVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKD 116


>gi|255315823|ref|ZP_05357406.1| putative nitroreductase [Clostridium difficile QCD-76w55]
 gi|260684650|ref|YP_003215935.1| putative nitroreductase [Clostridium difficile CD196]
 gi|260688308|ref|YP_003219442.1| putative nitroreductase [Clostridium difficile R20291]
 gi|260210813|emb|CBA65837.1| putative nitroreductase [Clostridium difficile CD196]
 gi|260214325|emb|CBE06677.1| putative nitroreductase [Clostridium difficile R20291]
          Length = 260

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 11 VDKELCIGC--GLCKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 60


>gi|319898890|ref|YP_004158983.1| NADH dehydrogenase I chain I [Bartonella clarridgeiae 73]
 gi|319402854|emb|CBI76405.1| NADH dehydrogenase I chain I [Bartonella clarridgeiae 73]
          Length = 163

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTIRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I    E     +     E          K++ L +  + +  
Sbjct: 118 I---VEGPNFEFATEMRE-----ELYYDKEKLLNNGDRWERE 151


>gi|126699072|ref|YP_001087969.1| putative iron-sulfur protein [Clostridium difficile 630]
 gi|254975022|ref|ZP_05271494.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26]
 gi|255092411|ref|ZP_05321889.1| putative iron-sulfur protein [Clostridium difficile CIP 107932]
 gi|255306435|ref|ZP_05350606.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255]
 gi|255314150|ref|ZP_05355733.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55]
 gi|255516828|ref|ZP_05384504.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34]
 gi|255649929|ref|ZP_05396831.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79]
 gi|260683084|ref|YP_003214369.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260686682|ref|YP_003217815.1| putative iron-sulfur protein [Clostridium difficile R20291]
 gi|306520014|ref|ZP_07406361.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58]
 gi|115250509|emb|CAJ68333.1| putative iron-sulfur protein [Clostridium difficile]
 gi|260209247|emb|CBA62547.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260212698|emb|CBE03782.1| putative iron-sulfur protein [Clostridium difficile R20291]
          Length = 424

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           ENC+ C    C+  CP+D   +    G+ ++ I  D C+ CGVC   C  ++I 
Sbjct: 293 ENCVKC--GKCITACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNCHKNSIM 344


>gi|70725656|ref|YP_252570.1| nitrate reductase subunit beta [Staphylococcus haemolyticus
           JCSC1435]
 gi|68446380|dbj|BAE03964.1| nitrate reductase beta chain [Staphylococcus haemolyticus JCSC1435]
          Length = 517

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|322628726|gb|EFY25512.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
          Length = 137

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 11 LCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + ++
Sbjct: 1  HCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNS 50


>gi|325109803|ref|YP_004270871.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324970071|gb|ADY60849.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 558

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT  C  C +  C+  CP + + +      +    D+C  C  C   CP    K + +
Sbjct: 117 VTSACHHCVNPACMNACPTNAYEKDPITGIVKHLDDQCFGCQYCTLACPYGVPKYNAD 174


>gi|303243653|ref|ZP_07329994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485895|gb|EFL48818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 256

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI C    CV+ CPV+   E +  + I+   CI CG CE  CPV AI
Sbjct: 196 VDNDTCIKCL--SCVDECPVNAIKEIKEGVEINKSSCIFCGRCEKVCPVHAI 245



 Score = 37.3 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  ENCI C    C   CP +  +        ++ D C+ C  CE  CP   IK   E G
Sbjct: 129 IDLENCIKC--GVCQRYCPTNAIHVVRRKSFDVNLDLCVGCKACENVCPKKVIKVQNELG 186

Query: 63  LELW 66
              +
Sbjct: 187 EIPF 190



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
          YV  + CI C    C E CPVD   +        I P++C+ C +C   CPV+AI
Sbjct: 42 YVFPKRCIRC--GLCYEECPVDAITKPSIRKPAEIIPEKCVKCEICAKTCPVNAI 94


>gi|300728400|ref|ZP_07061762.1| conserved domain protein [Prevotella bryantii B14]
 gi|299774319|gb|EFI70949.1| conserved domain protein [Prevotella bryantii B14]
          Length = 56

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++CI C    C++ CPV    EGE   +I PD C +CG C   CP +AI
Sbjct: 1  MAYVIGDDCIAC--GTCIDECPVGAISEGE-KYSIDPDACTECGTCASVCPNEAI 52


>gi|209516646|ref|ZP_03265499.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          H160]
 gi|209502921|gb|EEA02924.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          H160]
          Length = 412

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D     +N   +  D C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAIDN 66


>gi|126700741|ref|YP_001089638.1| putative nitroreductase [Clostridium difficile 630]
 gi|115252178|emb|CAJ70016.1| putative nitroreductase [Clostridium difficile]
          Length = 260

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 11 VDKELCIGC--GLCKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 60


>gi|77917781|ref|YP_355596.1| hypothetical protein Pcar_0165 [Pelobacter carbinolicus DSM 2380]
 gi|77543864|gb|ABA87426.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 227

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   C      + E    I    C  CG C   CP  AI
Sbjct: 170 ITDACISC--GKCQAGCSFKAISQHEGKFVIDHTRCDACGDCYMVCPAGAI 218


>gi|327310272|ref|YP_004337169.1| putative ATPase RIL [Thermoproteus uzoniensis 768-20]
 gi|326946751|gb|AEA11857.1| putative ATPase RIL [Thermoproteus uzoniensis 768-20]
          Length = 588

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVD 53
            V  ++C    C H +C++ CPV+         E      I    CI CG+C  +CP  
Sbjct: 4  AVVDRDSCDPKKCGH-ECIKYCPVNKSGKVIWIDENTGKAVISEKLCIGCGICVHKCPFS 62

Query: 54 AI 55
          AI
Sbjct: 63 AI 64


>gi|307729116|ref|YP_003906340.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1003]
 gi|307583651|gb|ADN57049.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1003]
          Length = 412

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D     EN   +  D C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDENNYVVKADVCNGCMACVPPCPTGAIDN 66


>gi|322419902|ref|YP_004199125.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320126289|gb|ADW13849.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter sp. M18]
          Length = 255

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C +  CV  CPV                  + ++  +CI CG C P CP  A   D
Sbjct: 79  PCMQCDNPPCVAACPVKGADGATWKETKGIGNGIVLVNYAKCIGCGKCVPACPYSARTMD 138


>gi|254496015|ref|ZP_05108918.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12]
 gi|254354764|gb|EET13396.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12]
          Length = 204

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ E  CI C  T C++ CPVD     G+   A+   EC  CG+C   CPVD I   T  
Sbjct: 78  VIREAECIGC--TKCIKACPVDAIIGSGKLMHAVIAHECTGCGLCVAPCPVDCIDMVTLA 135

Query: 62  GLELWLKINSEYATQWPNITTKKE 85
             +   ++  +          + E
Sbjct: 136 APDYDQELARQRFNAKQTRLLRDE 159


>gi|238928196|ref|ZP_04659956.1| formate dehydrogenase beta subunit [Selenomonas flueggei ATCC
           43531]
 gi|238884156|gb|EEQ47794.1| formate dehydrogenase beta subunit [Selenomonas flueggei ATCC
           43531]
          Length = 271

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC  C    C + CP +     EN  + I+ D+C+ C  CE  CP    K D 
Sbjct: 76  NCFHCGDPACAKGCPENAIDRNENGTVVINQDKCVGCHYCEHNCPWHIPKIDD 128


>gi|194292353|ref|YP_002008260.1| benzoyl-CoA dioxygenase component a [Cupriavidus taiwanensis LMG
          19424]
 gi|193226257|emb|CAQ72206.1| Benzoyl-CoA dioxygenase component A [Cupriavidus taiwanensis LMG
          19424]
          Length = 426

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPG 62
          +  E CI C    C   CPV           +  D+C  C  C   CP  +I      P 
Sbjct: 14 IDPEICIRCN--TCEATCPVGAITHDSRNYVVDADKCNLCMACISPCPTGSIDNWRDMPK 71

Query: 63 LELW 66
          L  +
Sbjct: 72 LRAY 75


>gi|162148803|ref|YP_001603264.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545449|ref|YP_002277678.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787380|emb|CAP56975.1| NADH-quinone oxidoreductase chain I [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533126|gb|ACI53063.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 162

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP +                    I   +CI CG+CE  CPVDAI
Sbjct: 60  EERCIACKL--CEATCPAEAITIESEPRDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K + L +  + + V
Sbjct: 118 V--EGPNYEFATETREEL------MYNKDKLLANGDRWESV 150


>gi|332528400|ref|ZP_08404394.1| RnfABCDGE type electron transport complex subunit B [Hylemonella
           gracilis ATCC 19624]
 gi|332042163|gb|EGI78495.1| RnfABCDGE type electron transport complex subunit B [Hylemonella
           gracilis ATCC 19624]
          Length = 248

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +  + CI C  T C++ CP D    G ++   +    C  C +C P CPVD I  +
Sbjct: 82  AVIDEDWCIGC--TLCLKACPTDAILGGNKHMHTVIDAYCTGCELCIPVCPVDCIHME 137


>gi|330811333|ref|YP_004355795.1| Electron transport complex protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379441|gb|AEA70791.1| Electron transport complex protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 341

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    I  DEC  C +C   CPVD I+    
Sbjct: 74  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTILIDECTGCDLCVAPCPVDCIEMHPL 131

Query: 61  P 61
           P
Sbjct: 132 P 132


>gi|269140245|ref|YP_003296946.1| electron transport protein [Edwardsiella tarda EIB202]
 gi|267985906|gb|ACY85735.1| electron transport protein [Edwardsiella tarda EIB202]
 gi|304560075|gb|ADM42739.1| Electron transport protein HydN [Edwardsiella tarda FL6-60]
          Length = 180

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   C  VCP       ++F+ +  ++CI C  C   CP   ++  T    + +
Sbjct: 58  CRQCEDAPCANVCPNGAISRQQDFICVDQEKCIGCKTCVVACPYGTMEVVTTTVTQRY 115


>gi|238910299|ref|ZP_04654136.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 157

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|225011154|ref|ZP_03701616.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacteria bacterium MS024-3C]
 gi|225004716|gb|EEG42676.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Flavobacteria bacterium MS024-3C]
          Length = 1024

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 851 CQHCNHAPCETVCPVAATSHSRQGQNHMAYNRCVGTRYCANNCPYKVRRFNW 902


>gi|222150387|ref|YP_002559540.1| respiratory nitrate reductase beta chain [Macrococcus caseolyticus
           JCSC5402]
 gi|222119509|dbj|BAH16844.1| respiratory nitrate reductase beta chain [Macrococcus caseolyticus
           JCSC5402]
          Length = 516

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|254469568|ref|ZP_05082973.1| NADH-quinone oxidoreductase subunit i [Pseudovibrio sp. JE062]
 gi|211961403|gb|EEA96598.1| NADH-quinone oxidoreductase subunit i [Pseudovibrio sp. JE062]
          Length = 153

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 50  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGFCQEACPVDA 107

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +  + +  
Sbjct: 108 IV--EGPNFEFATETREELF------YDKDKLLANGERWERE 141


>gi|325111191|ref|YP_004272259.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Planctomyces brasiliensis DSM 5305]
 gi|324971459|gb|ADY62237.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Planctomyces brasiliensis DSM 5305]
          Length = 1081

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++  C +VCPV    +  E    +  + CI    C   CP    + +         
Sbjct: 860 CMQCENAPCEQVCPVAATVHSTEGLNDMVYNRCIGTRYCANNCPYKVRRFNY-------- 911

Query: 68  KINSEYATQWPNITTKKE 85
                ++   P +T +KE
Sbjct: 912 -----FSNAKPLMTEEKE 924


>gi|254465688|ref|ZP_05079099.1| NADH-quinone oxidoreductase subunit i [Rhodobacterales bacterium
           Y4I]
 gi|206686596|gb|EDZ47078.1| NADH-quinone oxidoreductase subunit i [Rhodobacterales bacterium
           Y4I]
          Length = 164

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKEKLLSNGERWEAE 152


>gi|167769327|ref|ZP_02441380.1| hypothetical protein ANACOL_00653 [Anaerotruncus colihominis DSM
           17241]
 gi|167668295|gb|EDS12425.1| hypothetical protein ANACOL_00653 [Anaerotruncus colihominis DSM
           17241]
          Length = 250

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  TE CI C    CV VCP+      E       + C  C  C   CP  AI+ 
Sbjct: 183 FYATEACISC--GKCVRVCPLGNIRLEEGKPV-WANRCTHCMACICRCPCAAIEY 234


>gi|152971583|ref|YP_001336692.1| hydrogenase-3, Fe-S subunit (part of FHL complex) [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956432|gb|ABR78462.1| hydrogenase-3, Fe-S subunit (part of FHL complex) [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
          Length = 169

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 18 CHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 66


>gi|319408587|emb|CBI82242.1| NADH dehydrogenase I chain I [Bartonella schoenbuchensis R1]
          Length = 166

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 63  EERCIACKL--CEAICPAQAITIEAGPRCNDGTRRTIRYDIDMVKCIYCGFCQEACPVDA 120

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   ++  E          K++ L +  + +  
Sbjct: 121 IV--EGPNFEFATEMREEL------YYDKEKLLSNGDRWERE 154


>gi|296119426|ref|ZP_06837984.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295967309|gb|EFG80576.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 358

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 128 SDVCKHCTNAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRED 183


>gi|292494103|ref|YP_003533246.1| nitrate reductase; electron transfer subunit [Haloferax volcanii
           DS2]
 gi|291369327|gb|ADE01557.1| nitrate reductase; electron transfer subunit [Haloferax volcanii
           DS2]
          Length = 356

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C H  CVE CP    Y+ E    + I  + C     C   CP   +  
Sbjct: 154 CNHCTHPSCVEACPRKAIYKREEDGIVLIDQERCRGYRYCVEGCPYKKVYY 204


>gi|255527516|ref|ZP_05394384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255508786|gb|EET85158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 184

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CPV+   + +  + ++   CI C  C   CPV A+
Sbjct: 64  CRHCEDAPCANACPVNAIEQDDGSIRVNESACIGCKTCMLVCPVGAV 110


>gi|242277841|ref|YP_002989970.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120735|gb|ACS78431.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 170

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C   CPV         + I  + C  C  C   CP  A++
Sbjct: 59  CRQCEDAPCAAACPVGAIGYNGKSVVIDAERCFGCKACLAACPFGAMQ 106


>gi|153009743|ref|YP_001370958.1| NADH dehydrogenase subunit I [Ochrobactrum anthropi ATCC 49188]
 gi|166918794|sp|A6X1M5|NUOI_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|151561631|gb|ABS15129.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum anthropi ATCC
           49188]
          Length = 163

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKDKLLANGDRWERE 151


>gi|157962856|ref|YP_001502890.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157847856|gb|ABV88355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 190

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C++  CV+VCP    Y  ++ +  I+  +C+ C  C   CP      + E
Sbjct: 59  SCEQCENAPCVKVCPTGAAYVNDDGIVSINEKKCVGCLYCVAACPYKVRFINPE 112


>gi|117621271|ref|YP_856980.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562678|gb|ABK39626.1| 4Fe-4S binding domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 230

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    +  + +  + ++PD C+ C  C   CP  
Sbjct: 100 SCQHCDNAPCVHVCPTGASHIRKEDGIVDVNPDLCVGCMYCLAACPYQ 147


>gi|110643822|ref|YP_671552.1| putative electron transport protein YsaA [Escherichia coli 536]
 gi|218691862|ref|YP_002400074.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli ED1a]
 gi|110345414|gb|ABG71651.1| putative electron transport protein YsaA [Escherichia coli 536]
 gi|218429426|emb|CAR10392.2| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli ED1a]
 gi|222035288|emb|CAP78033.1| electron transport protein ysaA [Escherichia coli LF82]
 gi|312948139|gb|ADR28966.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|324007369|gb|EGB76588.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
          Length = 157

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
 gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
          Length = 597

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E C  C    C   CP +C    +N    I  + CI CG C   C   A+
Sbjct: 541 TYSIDAEKCKKC--GLCARNCPANCISGNKNTPYVIDGERCIRCGSCMDSCKFGAV 594


>gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
 gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
          Length = 597

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +  E C  C    C   CP +C    +N    I  + CI CG C   C   A+
Sbjct: 541 TYSIDAEKCKKC--GLCARNCPANCISGNKNTPYVIDGERCIRCGSCMDSCKFGAV 594


>gi|330911477|gb|EGH39987.1| nrfC-like protein [Escherichia coli AA86]
          Length = 184

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|329850720|ref|ZP_08265565.1| NADH-quinone oxidoreductase subunit 9 [Asticcacaulis biprosthecum
           C19]
 gi|328841035|gb|EGF90606.1| NADH-quinone oxidoreductase subunit 9 [Asticcacaulis biprosthecum
           C19]
          Length = 159

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAITIEAEPRDDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E       E       +  K   L +  + +  
Sbjct: 115 V--EGPNFEFSTDTREEL------LYDKDRLLANGDRWERE 147


>gi|323499047|ref|ZP_08104027.1| iron-sulfur cluster-binding protein [Vibrio sinaloensis DSM 21326]
 gi|323315882|gb|EGA68913.1| iron-sulfur cluster-binding protein [Vibrio sinaloensis DSM 21326]
          Length = 553

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C    CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCD--RCVDACPAGALSSEGNDKTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPDTEPGLE--LWLK 68
           +AI        E   +++
Sbjct: 230 EAIHYALPNPQETQKFVE 247



 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C LC    CV VCP    +       L     +CI CG+C   CP   +  
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGASPSLQFIEQDCIQCGLCTKACPEQVLTM 468


>gi|303258425|ref|ZP_07344428.1| protein NrfC [Burkholderiales bacterium 1_1_47]
 gi|330999910|ref|ZP_08323609.1| thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
 gi|302858871|gb|EFL81959.1| protein NrfC [Burkholderiales bacterium 1_1_47]
 gi|329573428|gb|EGG55037.1| thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
          Length = 222

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C    CV VCP    +     N + +    C+ C  C   CP +    + E     
Sbjct: 92  SCQQCSEPPCVRVCPTGAAHIDPATNIVTMDNSRCVGCKYCIAGCPYNVRFINEETKAAE 151


>gi|317052759|ref|YP_004113875.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316947843|gb|ADU67319.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurispirillum indicum S5]
          Length = 187

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E C  C +  CV VCPV   Y  E+ +  ++   CI C +C   CP  A         +
Sbjct: 63  PEQCHQCANPPCVPVCPVKATYAREDGVIVVNKSTCIGCTLCVISCPYGARYMSENRKAD 122

Query: 65  L 65
            
Sbjct: 123 K 123


>gi|260173563|ref|ZP_05759975.1| putative ferredoxin [Bacteroides sp. D2]
          Length = 278

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + C  C    CV  CP     +G+        +CI C  C   C   A   +T 
Sbjct: 207 DEDLCTHC--GLCVVRCPAGAITKGDELHT-DEAKCIKCCACVKACVRKARVYETP 259


>gi|189219972|ref|YP_001940612.1| Anaerobic dehydrogenase and Fe-S-cluster domain [Methylacidiphilum
           infernorum V4]
 gi|189186830|gb|ACD84015.1| Anaerobic dehydrogenase and Fe-S-cluster domain [Methylacidiphilum
           infernorum V4]
          Length = 1073

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           Y     C  C++  C  VCPV    +  +    +  + CI    C   CP  
Sbjct: 858 YFEPMLCQQCENAPCEAVCPVYATVHSKDGLNVMVYNRCIGTRACAANCPYK 909


>gi|167462573|ref|ZP_02327662.1| nitrate reductase, beta subunit [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 392

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+   +  + +  D C     C   CP   +  +       
Sbjct: 73  CEHCLNPSCVASCPSGALYKREEDGIVLVDQDACRGWRFCTNGCPYHKVYYNWNTHKAE 131


>gi|167625038|ref|YP_001675332.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355060|gb|ABZ77673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 190

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C++  CV+VCP    Y  ++ +  I+  +C+ C  C   CP      + E
Sbjct: 59  SCEQCENAPCVKVCPTGAAYVNDDGIVSINEKKCVGCLYCVAACPYKVRFINPE 112


>gi|70607815|ref|YP_256685.1| hypothetical protein Saci_2098 [Sulfolobus acidocaldarius DSM 639]
 gi|68568463|gb|AAY81392.1| conserved Archaeal membrane protein [Sulfolobus acidocaldarius DSM
           639]
          Length = 467

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDT 59
             + C+ CK  DC   CPV       NF+        +CI  G C   CP D I    
Sbjct: 392 DPQQCLNCKTVDCALACPVGLTDMRANFIKKGEFKSFKCIGVGDCVEACPHDNIVFHD 449


>gi|325496246|gb|EGC94105.1| electron transporter hydN [Escherichia fergusonii ECD227]
          Length = 175

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|322831873|ref|YP_004211900.1| electron transport protein HydN [Rahnella sp. Y9602]
 gi|321167074|gb|ADW72773.1| electron transport protein HydN [Rahnella sp. Y9602]
          Length = 181

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCP        + + +  + CI C  C   CP  A++  T+P    
Sbjct: 58  CRQCEDAPCANVCPNGAILRTGDHVQVMQERCIGCKTCVVACPYGAMEVVTKPVFRQ 114


>gi|264677950|ref|YP_003277857.1| Mbh14 iron-sulfur protein [Comamonas testosteroni CNB-2]
 gi|262208463|gb|ACY32561.1| Mbh14 iron-sulfur protein [Comamonas testosteroni CNB-2]
          Length = 453

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   CV+VCPV               ECI CG+C   C     K +   GL     
Sbjct: 247 CIDCKL--CVQVCPVGIDIRKGLQY-----ECIGCGLCIDACNSVMDKMEYPRGLIRLTT 299

Query: 69  INSEYATQWPNI 80
            N+  A  W  +
Sbjct: 300 QNA-VAKAWKQV 310


>gi|238921139|ref|YP_002934654.1| 4Fe-4S iron-sulfur binding domain protein [Edwardsiella ictaluri
           93-146]
 gi|238870708|gb|ACR70419.1| 4Fe-4S iron-sulfur binding domain protein [Edwardsiella ictaluri
           93-146]
          Length = 180

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   C  VCP       ++F+ +  ++CI C  C   CP   ++  T    + +
Sbjct: 58  CRQCEDAPCANVCPNGAISRQQDFICVDQEKCIGCKTCVVACPYGTMEVVTTTVTQRY 115


>gi|218701203|ref|YP_002408832.1| electron transport protein HydN [Escherichia coli IAI39]
 gi|218371189|emb|CAR19020.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli IAI39]
          Length = 175

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCENAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|315230439|ref|YP_004070875.1| RNase L inhibitor [Thermococcus barophilus MP]
 gi|315183467|gb|ADT83652.1| RNase L inhibitor [Thermococcus barophilus MP]
          Length = 590

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E      I    C  CG+C  +CP +AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 66


>gi|307153522|ref|YP_003888906.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306983750|gb|ADN15631.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 533

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC 43
          M Y + +NC  C    C   CP    +  +    I    C DC
Sbjct: 1  MPYTIPDNCFGC--GTCQPQCPTGAIHVDDGRYWIESGLCNDC 41


>gi|90413851|ref|ZP_01221838.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum 3TCK]
 gi|90325162|gb|EAS41665.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum 3TCK]
          Length = 566

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C    CV+ CP        + + I+P  C   G C   CP +AI        +
Sbjct: 198 NGCN--RCVDACPAGALSSLGHAIEINPYLCQGVGTCATACPTEAITYALPDPEK 250



 Score = 41.5 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           +++C LC    CV VCP   F+   G   L +  ++CI CG+CE  CP
Sbjct: 431 SDDCTLC--MSCVAVCPTRAFHAVGGRPGLQLIEEDCIQCGLCEKACP 476


>gi|254975776|ref|ZP_05272248.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-66c26]
 gi|255093163|ref|ZP_05322641.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CIP 107932]
 gi|255314905|ref|ZP_05356488.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-76w55]
 gi|255517579|ref|ZP_05385255.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-97b34]
 gi|255650690|ref|ZP_05397592.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-37x79]
 gi|260683777|ref|YP_003215062.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CD196]
 gi|260687437|ref|YP_003218571.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           R20291]
 gi|306520615|ref|ZP_07406962.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-32g58]
 gi|260209940|emb|CBA63916.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CD196]
 gi|260213454|emb|CBE05132.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           R20291]
          Length = 140

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C+  CP +CF + E F+ +    CI C +CE  C   A+    +     
Sbjct: 54  ACIHCNEPKCLGACPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGALIYGNDGKANK 111


>gi|74313277|ref|YP_311696.1| electron transport protein HydN [Shigella sonnei Ss046]
 gi|73856754|gb|AAZ89461.1| involved in electron transport from formate to hydrogen, Fe-S
           centers [Shigella sonnei Ss046]
          Length = 175

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|194432997|ref|ZP_03065280.1| 4Fe-4S binding domain protein [Shigella dysenteriae 1012]
 gi|194418724|gb|EDX34810.1| 4Fe-4S binding domain protein [Shigella dysenteriae 1012]
 gi|332088583|gb|EGI93696.1| protein aegA domain protein [Shigella dysenteriae 155-74]
          Length = 175

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|150018614|ref|YP_001310868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905079|gb|ABR35912.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 189

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C   CP       +  + I+ D CI C  C   CP  AI    E
Sbjct: 59  CRHCENAPCANACPNGSIINKDGVVLINKDTCIGCKSCAIVCPFGAIDIIVE 110


>gi|324017281|gb|EGB86500.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
          Length = 143

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|300723256|ref|YP_003712556.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629773|emb|CBJ90381.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila
           ATCC 19061]
          Length = 207

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  ENCI C  T C++ CPVD           +  D C  C +C   CP D I  
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIIGANRAMHTVVEDLCTGCDLCVAPCPTDCITM 164


>gi|295097294|emb|CBK86384.1| Fe-S-cluster-containing hydrogenase components 2 [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 186

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 63  CRQCEDAPCANVCPNGAIKREKGFVHVMQERCIGCKTCVVACPYGAM 109


>gi|296110016|ref|YP_003616965.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus infernus ME]
 gi|295434830|gb|ADG14001.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus infernus ME]
          Length = 613

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V +NC  C    C EVC ++C Y   ++   + + CI CG C   CP +A +   E  
Sbjct: 491 VNDNCNGC--GRCYEVCKLECIYIRGSYSYTNYNICIGCGKCIKACPNEAREVLEEGY 546


>gi|167629819|ref|YP_001680318.1| 4fe-4S binding domain protein [Heliobacterium modesticaldum Ice1]
 gi|167592559|gb|ABZ84307.1| 4fe-4S binding domain protein [Heliobacterium modesticaldum Ice1]
          Length = 328

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           V   C+ C +  C ++CP     +     + I  D C     C   CP 
Sbjct: 124 VPRRCMHCDNPPCADICPFSAQTKKPEGPVVIDKDLCFGGAKCRDVCPW 172


>gi|91223727|ref|ZP_01258991.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 12G01]
 gi|91191219|gb|EAS77484.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 12G01]
          Length = 553

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP             + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDRTGHRIEINPYLCQGVGTCATACPT 229

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 230 EAIHYALPNPEDTQKFIE 247



 Score = 36.9 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGRSPSLKFVEQDCIQCGLCEKACP 462


>gi|90578220|ref|ZP_01234031.1| electron transport protein (FeS senter) from formate to hydrogen
           [Vibrio angustum S14]
 gi|90441306|gb|EAS66486.1| electron transport protein (FeS senter) from formate to hydrogen
           [Vibrio angustum S14]
          Length = 182

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C +VCP +     + F+ +    CI C  C   CP  A+ 
Sbjct: 58  CRQCDDAPCAQVCPNNAIVLEDGFVKVIQSRCIGCKTCVIACPYGAMN 105


>gi|78224540|ref|YP_386287.1| NADH dehydrogenase I subunit F [Geobacter metallireducens GS-15]
 gi|78195795|gb|ABB33562.1| NADH dehydrogenase I, F subunit [Geobacter metallireducens GS-15]
          Length = 591

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E C+ C    C + CPVD   +E      +  ++C  C  C   C   AI
Sbjct: 540 VIEEKCVKC--GACFKACPVDAIVWEKGQVAYLDKEKCTKCKSCYDACRFMAI 590


>gi|317152026|ref|YP_004120074.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|317152315|ref|YP_004120363.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|316942277|gb|ADU61328.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|316942566|gb|ADU61617.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
          Length = 446

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V    C  C   +C  VC                + P  CI+CG C   CP  AI     
Sbjct: 54  VDATKCEAC--GECEAVCATGAIQPINDDGIRAVVDPAACINCGQCLTHCPYGAIYEGVS 111

Query: 61  PGLELWLKI 69
              E++ K+
Sbjct: 112 YVDEIFEKL 120


>gi|312135897|ref|YP_004003235.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775948|gb|ADQ05435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor owensensis OL]
          Length = 373

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+ C        E     I  ++C+ CG C   C   A     +    + 
Sbjct: 195 KCVGC--GMCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFGAATVKWDEAASIA 252

Query: 67  LKINSEY 73
            +  +EY
Sbjct: 253 SEKIAEY 259


>gi|309811972|ref|ZP_07705738.1| formate dehydrogenase-N subunit beta [Dermacoccus sp. Ellin185]
 gi|308434030|gb|EFP57896.1| formate dehydrogenase-N subunit beta [Dermacoccus sp. Ellin185]
          Length = 408

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           M    ++ C  C H  C++ CP    +  E   + +  D C  CG C   CP   I
Sbjct: 220 MA---SDVCKHCTHAGCLDNCPTGALFRTEFGTVVVQADVCNGCGYCVGGCPFGVI 272


>gi|296104389|ref|YP_003614535.1| electron transport protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058848|gb|ADF63586.1| electron transport protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 186

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +    CI C  C   CP  A+
Sbjct: 63  CRQCEDAPCANVCPNGAIKREKGFVHVMQARCIGCKTCVVACPYGAM 109


>gi|261342154|ref|ZP_05970012.1| electron transport protein HydN [Enterobacter cancerogenus ATCC
           35316]
 gi|288315487|gb|EFC54425.1| electron transport protein HydN [Enterobacter cancerogenus ATCC
           35316]
          Length = 181

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAIKREKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|170696011|ref|ZP_02887149.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          graminis C4D1M]
 gi|170139091|gb|EDT07281.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          graminis C4D1M]
          Length = 413

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP+D     +N   +  D C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAIDN 66


>gi|86749700|ref|YP_486196.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris HaA2]
 gi|115502514|sp|Q2IWX5|NUOI2_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|86572728|gb|ABD07285.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           HaA2]
          Length = 162

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K   L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKARLLANGDRWEREIAK 153


>gi|317484987|ref|ZP_07943870.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
           [Bilophila wadsworthia 3_1_6]
 gi|316923725|gb|EFV44928.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
           [Bilophila wadsworthia 3_1_6]
          Length = 294

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  + C  C    C E C  D   +  +   I P  C  CGVC   CP  AI    + 
Sbjct: 61  AVIDRDACRRC--GICFEHCRFDAVKKDGDVYGIDPLRCEGCGVCVALCPAKAIAFPEKE 118

Query: 62  GLELWL 67
             E ++
Sbjct: 119 CGEWYV 124


>gi|294083719|ref|YP_003550476.1| NADH-quinone oxidoreductase subunit I [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663291|gb|ADE38392.1| NADH-quinone oxidoreductase, chain I [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 162

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 18/105 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117

Query: 56  ------KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                 +  TE   EL+   N   A      T    +L + A+  
Sbjct: 118 VEGPNFEFATETREELYYDKNKLLANGDRWETEIARNLAADAEWR 162


>gi|260574770|ref|ZP_05842773.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sp. SW2]
 gi|259023187|gb|EEW26480.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sp. SW2]
          Length = 164

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L + A+ +  
Sbjct: 120 V--EGPNFEFSTETREELF------YNKEKLLANGAQWEAE 152


>gi|224371980|ref|YP_002606146.1| PflC2 [Desulfobacterium autotrophicum HRM2]
 gi|223694699|gb|ACN17982.1| PflC2 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----KPDTEPG 62
           ++CI C   +CV  CP       EN +A    +CI+CG C   CP +A+    +  +   
Sbjct: 55  QSCIGC--GECVAACPEQALELNENGVARDLVKCINCGHCAEICPANAMEKTGRCHSTDS 112

Query: 63  LELWLKINSEYAT 75
           L   +K +  +  
Sbjct: 113 LMEMIKKDRLFYE 125


>gi|220905327|ref|YP_002480639.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869626|gb|ACL49961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 332

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
            C+ C +  CV +CP     +       I    C+  G C   CP 
Sbjct: 131 RCLHCLNPQCVSLCPSGAARQSPQGAAYIDESMCLGDGPCHRACPW 176


>gi|197118561|ref|YP_002138988.1| iron-sulfur cluster-binding hydrogenase protein [Geobacter
           bemidjiensis Bem]
 gi|197087921|gb|ACH39192.1| iron-sulfur cluster-binding hydrogenase protein [Geobacter
           bemidjiensis Bem]
          Length = 264

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C+   C+E CP       E   + + PD C  CG C   CP   I    + 
Sbjct: 79  SDVCKHCERAGCLEACPTGAIVRTEFESVYVQPDVCNGCGYCVVCCPFGVINRREDD 135


>gi|110680455|ref|YP_683462.1| NADH dehydrogenase subunit I [Roseobacter denitrificans OCh 114]
 gi|115502543|sp|Q163R7|NUOI_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|109456571|gb|ABG32776.1| NADH-quinone oxidoreductase chain I [Roseobacter denitrificans OCh
           114]
          Length = 164

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 32/101 (31%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 62  EERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K   L +  + +  
Sbjct: 120 V--EGPNFEFSTETREEL------YYDKDRLLANGERWEAE 152


>gi|78067137|ref|YP_369906.1| ferredoxin [Burkholderia sp. 383]
 gi|77967882|gb|ABB09262.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. 383]
          Length = 334

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +    I    C  C +C P CPVD I  
Sbjct: 112 AFIDESLCIGC--TLCMQACPVDAIVGAPKQMHTIIESLCTGCDLCVPPCPVDCIAM 166


>gi|29346027|ref|NP_809530.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568565|ref|ZP_04845976.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|298385330|ref|ZP_06994888.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 1_1_14]
 gi|29337921|gb|AAO75724.1| Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport
           complex protein rnfB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251842638|gb|EES70718.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|298261471|gb|EFI04337.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 1_1_14]
          Length = 293

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP-DTEPGLE 64
           T +CI C    CV+ CP +      N   I P++C  C  C   CP + I   +  P   
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNTIIELNFPPRKP 275

Query: 65  LWLKINSEYATQWPNITT 82
              +     A + P +T 
Sbjct: 276 KAEEAPKTVAAEAPKVTE 293



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 188


>gi|332185682|ref|ZP_08387429.1| NADH-quinone oxidoreductase, chain I family protein [Sphingomonas
           sp. S17]
 gi|332014040|gb|EGI56098.1| NADH-quinone oxidoreductase, chain I family protein [Sphingomonas
           sp. S17]
          Length = 161

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAEPRDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       I  K + L +  + +
Sbjct: 117 V--EGPNFEFSTETREEL------IYDKSKLLDNGDRWE 147


>gi|330445943|ref|ZP_08309595.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490134|dbj|GAA04092.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 551

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C    C+E CP          +AI P  C   G C   CP +AI         
Sbjct: 188 QGCD--RCLEACPAGALSSDGVEIAIDPYLCQGVGTCATACPTEAITYALPDPQN 240



 Score = 41.1 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T++C LC    CV VCP    +       L    ++C+ CG+CE  CP   I  +     
Sbjct: 416 TKDCTLC--MSCVAVCPTRALHAIGDRPGLLFIEEDCVQCGMCEKACPEKVISLE-PRFN 472

Query: 64  ELW 66
             W
Sbjct: 473 WDW 475


>gi|323971874|gb|EGB67099.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 219

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D 
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDY 164


>gi|312136920|ref|YP_004004257.1| nitrite and sulphite reductase 4fe-4S region [Methanothermus
           fervidus DSM 2088]
 gi|311224639|gb|ADP77495.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermus
           fervidus DSM 2088]
          Length = 629

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  E C  C    C EVC V+           + + CI CG C   CP +  +   E 
Sbjct: 498 PLINEEKCNGC--GRCAEVCKVEAIDIRGETSYTNYNLCIGCGKCIDACPNEGREVKDEG 555

Query: 62  G 62
            
Sbjct: 556 Y 556



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          V TE C  C    CV VCP D      +   I        G+C   CP
Sbjct: 20 VDTELCAKC--GTCVVVCPNDLLDFENHPKLIEECLRKGNGMCYDICP 65


>gi|302392270|ref|YP_003828090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302204347|gb|ADL13025.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 161

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C+   C E CP     + E    + I  D+CI C +C   CP+  I          
Sbjct: 53  CLHCEDPSCQEACPTGAINKIEETGAVVIDHDKCIGCNMCMMVCPIGIISTAETETSAH 111


>gi|300692030|ref|YP_003753025.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           PSI07]
 gi|299079090|emb|CBJ51752.2| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           PSI07]
          Length = 268

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E CI C  T C++ CPVD           +  D C  C +C   CPVD I  
Sbjct: 83  AVIDPERCIGC--TLCIQACPVDAIVGAPKAMHVVLEDWCTGCDLCVAPCPVDCIDM 137


>gi|53802343|ref|YP_112960.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylococcus capsulatus str. Bath]
 gi|53756104|gb|AAU90395.1| 4Fe-4S binding domain protein [Methylococcus capsulatus str. Bath]
          Length = 349

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + C  C  T+C + C        +    +    C+ C  C   C  +AI+ 
Sbjct: 231 VDKQRCTGC--TECAKKCMCGAIKMVDKVAVVDQFSCMSCHDCVDACDWNAIEW 282


>gi|332759299|gb|EGJ89607.1| nitrate reductase, beta subunit [Shigella flexneri 2747-71]
          Length = 318

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP  
Sbjct: 177 MMYL-PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYK 230


>gi|306820550|ref|ZP_07454183.1| 4Fe-4S ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551464|gb|EFM39422.1| 4Fe-4S ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 314

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y   E CI C    CV++CP  C    ++ +  + DECI C  C   CP  A     + 
Sbjct: 237 PYTDKEKCINCYK--CVKICPKSCI---DDKIMTNRDECIVCMACVKICPTCARISYPQN 291

Query: 62  GLELW 66
            +  +
Sbjct: 292 TIVKF 296


>gi|299530179|ref|ZP_07043605.1| Mbh14 iron-sulfur protein [Comamonas testosteroni S44]
 gi|298721836|gb|EFI62767.1| Mbh14 iron-sulfur protein [Comamonas testosteroni S44]
          Length = 430

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   CV+VCPV               ECI CG+C   C     K +   GL     
Sbjct: 224 CIDCKL--CVQVCPVGIDIRKGLQY-----ECIGCGLCIDACNSVMDKMEYPRGLIRLTT 276

Query: 69  INSEYATQWPNI 80
            N+  A  W  +
Sbjct: 277 QNA-VAKAWKQV 287


>gi|269469176|gb|EEZ80718.1| NADH dehydrogenase I chain I [uncultured SUP05 cluster bacterium]
          Length = 173

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP +                    I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPANAITIESEMRDDGTRRTTQYDIDLFKCIFCGFCEEACPVDAI 118


>gi|237746743|ref|ZP_04577223.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           HOxBLS]
 gi|229378094|gb|EEO28185.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           HOxBLS]
          Length = 162

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVDAI
Sbjct: 60  EERCIGCKL--CEAVCPAKAILIETGEREDGSRRTTRYEIDQSKCIFCGLCEEACPVDAI 117


>gi|288575149|ref|ZP_06393506.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570890|gb|EFC92447.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 229

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E+C+ C  T C + CPV     + +    I P++C+ CGVC  +CP  AI+ D 
Sbjct: 170 VREEDCVGC--TICAKACPVGAIEGKVKEKHVIDPEKCVGCGVCASKCPKGAIEEDE 224



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E CI C    C++VCP +      E    + +H D C  C  C   CPVDA+  
Sbjct: 64  EKCIGC--GMCMKVCPANAIERAPEDPKKIIVHNDRCCFCAQCNDICPVDALTM 115


>gi|45357641|ref|NP_987198.1| hypothetical protein MMP0078 [Methanococcus maripaludis S2]
 gi|45047201|emb|CAF29634.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 281

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  ENC  C  T C++ C VD     +    I  ++C++CG C   C    I
Sbjct: 160 INEENCNGC--TLCLKSCSVDAITIVDKKAVIDYEKCVNCGKCGKSCKRKCI 209


>gi|330448640|ref|ZP_08312288.1| putative electron transport protein HydN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492831|dbj|GAA06785.1| putative electron transport protein HydN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 182

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C +VCP +     + F+ +    CI C  C   CP  A+ 
Sbjct: 58  CRQCDDAPCAQVCPNNAIVLEDGFVKVIQSRCIGCKTCVIACPYGAMN 105


>gi|319790804|ref|YP_004152444.1| benzoyL-CoA oxygenase/reductase, boxa protein [Variovorax
          paradoxus EPS]
 gi|315593267|gb|ADU34333.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax
          paradoxus EPS]
          Length = 429

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 11/79 (13%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP------ 57
          +  E CI C    C   CPV+     +N   +  D C  C  C   CP  +I        
Sbjct: 15 IDPEICIRCN--TCEATCPVNAITHDDNNYVVRADVCNGCMACISPCPTGSIDNWRTMPL 72

Query: 58 ---DTEPGLELWLKINSEY 73
              T      W ++ +E 
Sbjct: 73 VRAYTIEEQLTWEELPAEL 91


>gi|297570585|ref|YP_003691929.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926500|gb|ADH87310.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 1029

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            V TE CI C    C   CP         E           C  CGVC   CP  AI    
Sbjct: 950  VETEKCIGC--GVCETFCPYKAIRLHKVEKGRKAETVTASCKGCGVCAARCPTLAIDMGR 1007

Query: 60   EPGLELWLKINS 71
                 +  +I +
Sbjct: 1008 FTFDGIMAQIKA 1019


>gi|302536754|ref|ZP_07289096.1| nitrate reductase, beta subunit [Streptomyces sp. C]
 gi|302445649|gb|EFL17465.1| nitrate reductase, beta subunit [Streptomyces sp. C]
          Length = 507

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 187 CEHCLNPACVSSCPSGAMYKREEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 237


>gi|255655479|ref|ZP_05400888.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63]
 gi|296451471|ref|ZP_06893208.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296880180|ref|ZP_06904146.1| probable iron-sulfur protein [Clostridium difficile NAP07]
 gi|296259738|gb|EFH06596.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296428769|gb|EFH14650.1| probable iron-sulfur protein [Clostridium difficile NAP07]
          Length = 424

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           E+C+ C    C+  CP+D   +    G+ ++ I  D C+ CGVC   C  ++I 
Sbjct: 293 ESCVKC--GKCIAACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNCHKNSIM 344


>gi|210613377|ref|ZP_03289697.1| hypothetical protein CLONEX_01904 [Clostridium nexile DSM 1787]
 gi|210151219|gb|EEA82227.1| hypothetical protein CLONEX_01904 [Clostridium nexile DSM 1787]
          Length = 56

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I  D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSC--GACEAECPVGAISQGADHYEIDKDACVDCGACAAQCPTGAISAE 56


>gi|164663359|ref|XP_001732801.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966]
 gi|159106704|gb|EDP45587.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966]
          Length = 245

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 143 EERCIACKL--CEAICPALAITIESEPRMDGSRRTTRYDIDMTKCIYCGMCQEACPVDAI 200


>gi|3929523|gb|AAC82543.1| NarH [Staphylococcus carnosus]
          Length = 525

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 177 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 235

Query: 59  TEPGLEL 65
            +     
Sbjct: 236 WKTNKAE 242


>gi|312130892|ref|YP_003998232.1| quinol:cytochrome c oxidoreductase iroN-sulfur protein precursor
           [Leadbetterella byssophila DSM 17132]
 gi|311907438|gb|ADQ17879.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Leadbetterella byssophila DSM 17132]
          Length = 1008

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT---EPGLE 64
           C  C +  C  VCPV         L  +  + C     C   CP    + +        E
Sbjct: 826 CQHCSNAPCETVCPVLATTHSSEGLNQMTYNRCFGTRYCANNCPYKVRRFNWFKYFENDE 885

Query: 65  LWLKINSEY 73
                N+E 
Sbjct: 886 FDYAFNNEL 894


>gi|268611546|ref|ZP_06145273.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus flavefaciens FD-1]
          Length = 576

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C+ C    C+++ CP       +    I   +C+ CG+C+ +C + AI 
Sbjct: 527 VDADKCVGC--GMCMKLGCP--AISMRDGRAVIDHTQCVGCGICQEQCKIGAIN 576


>gi|240280829|gb|EER44333.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           capsulatus H143]
          Length = 150

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 48  EERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 105

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EYAT+     +  K++ L +  K +  
Sbjct: 106 VESP----------NAEYATETREELLYNKEKLLANGDKWEPE 138


>gi|224477378|ref|YP_002634984.1| nitrate reductase beta chain [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421985|emb|CAL28799.1| nitrate reductase beta chain [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 517

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  +
Sbjct: 169 MMYL-PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFN 227

Query: 59  TEPGLEL 65
            +     
Sbjct: 228 WKTNKAE 234


>gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
 gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
          Length = 624

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C    C   CP      E      I  ++C  CG+C  +C   AI
Sbjct: 569 YVINPELCKGC--GLCARSCPQSAISGERGKPYVIDQEKCAKCGICVEKCKFKAI 621



 Score = 35.3 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +CP            I+P+ C  CG+C   CP  AI  +
Sbjct: 557 ICPSGMCT-AFKKYVINPELCKGCGLCARSCPQSAISGE 594


>gi|7321245|emb|CAB82181.1| nitrate reductase beta-subunit [Pseudomonas stutzeri]
          Length = 321

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    ++I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPTCAASCPSGAIYKREEDGIVSIDQEKCRGWRMCISGCPYKKIYFNWK 221


>gi|57640966|ref|YP_183444.1| putative ATPase RIL [Thermococcus kodakarensis KOD1]
 gi|57159290|dbj|BAD85220.1| predicted ATPase, RNase L inhibitor homolog [Thermococcus
          kodakarensis KOD1]
          Length = 594

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI-- 55
          + C    C H  C  VCPV+          E      I    C  CG+C  +CP +AI  
Sbjct: 10 DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAITI 69

Query: 56 ---KPDTEPGLELWLKINS 71
               + E G      IN+
Sbjct: 70 VNLPEELEEGCVHRYGINA 88


>gi|84497311|ref|ZP_00996133.1| probable respiratory nitrate reductase (beta chain) NarH
           [Janibacter sp. HTCC2649]
 gi|84382199|gb|EAP98081.1| probable respiratory nitrate reductase (beta chain) NarH
           [Janibacter sp. HTCC2649]
          Length = 549

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+ E    + +  D+C     C   CP   I  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKREEDGIVLVDQDKCRGWRKCVSGCPYKKIYF 232


>gi|291543380|emb|CBL16489.1| Fe-S-cluster-containing hydrogenase components 2 [Ruminococcus sp.
           18P13]
          Length = 149

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   CV+ C        +  + I+ D CI C  C   CP  AI P     ++ 
Sbjct: 57  SCRHCEDPLCVKSCLTGALSVKDGVIRINSDRCIHCYTCILACPYGAIVPSDNGAVKK 114


>gi|224418757|ref|ZP_03656763.1| hypothetical protein HcanM9_05713 [Helicobacter canadensis MIT
           98-5491]
 gi|253826716|ref|ZP_04869601.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313142273|ref|ZP_07804466.1| polysulfide reductase chain B [Helicobacter canadensis MIT 98-5491]
 gi|253510122|gb|EES88781.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313131304|gb|EFR48921.1| polysulfide reductase chain B [Helicobacter canadensis MIT 98-5491]
          Length = 189

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V  +C +C+HT CV VCP    +  E+ +  I  ++C+ C  C   CP +A
Sbjct: 55  VRHSCEMCEHTPCVTVCPTHASFMDEDGIVDIDANKCVGCLYCVVACPYNA 105


>gi|218709479|ref|YP_002417100.1| hypothetical protein VS_1488 [Vibrio splendidus LGP32]
 gi|218322498|emb|CAV18657.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 553

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSEKTGHKIEINPYLCQGVGTCATSCPT 229

Query: 53  DAIKPD--TEPGLELWLKI---NSEYATQWPNI 80
           +AI          + +++    N E+A     I
Sbjct: 230 EAITYALPNPDDTQKFIERTLANYEHAGGLDPI 262



 Score = 36.9 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           C LC    CV VCP    +       L     +CI CG+CE  CP +
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPEN 464


>gi|220916901|ref|YP_002492205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954755|gb|ACL65139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 258

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V   C  C+   C  VCP        +  + ++   C+ C  C   CP +    + E
Sbjct: 98  VPRLCNHCESPACTTVCPTQATCRRADGVVVVNNTRCVGCAACVQACPYEGRFLNRE 154


>gi|89074823|ref|ZP_01161277.1| electron transport protein (FeS senter) from formate to hydrogen
           [Photobacterium sp. SKA34]
 gi|89049398|gb|EAR54960.1| electron transport protein (FeS senter) from formate to hydrogen
           [Photobacterium sp. SKA34]
          Length = 182

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C +VCP +     + F+ +    CI C  C   CP  A+ 
Sbjct: 58  CRQCDDAPCAQVCPNNAIVLEDGFVKVIQSRCIGCKTCVIACPYGAMN 105


>gi|332999450|gb|EGK19035.1| hydrogenase-4 component A [Shigella flexneri VA-6]
          Length = 175

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISCDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|325280075|ref|YP_004252617.1| electron transport complex, RnfABCDGE type, B subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324311884|gb|ADY32437.1| electron transport complex, RnfABCDGE type, B subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 330

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C    C + CP D      N   I   +C  C  C   CP  AI     P  +   
Sbjct: 220 ACIGC--GKCAKECPFDAITVENNLAYIDYSKCRLCRKCVGVCPTGAIHEVNFPPRKTET 277

Query: 68  K 68
           +
Sbjct: 278 E 278



 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  CP D  +     L   +  D+C+ CG C   CP + I
Sbjct: 142 CLGC--GDCVAACPFDAIHMDSTTLLPVVDDDKCVACGACVKACPRNII 188



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 21/84 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCP-----------------VDCFYEGENFLAIHPDE--CID 42
             V  + C+ C    CV+ CP                 V C  + +  +A    +  CI 
Sbjct: 166 PVVDDDKCVAC--GACVKACPRNIIELRNKGPKDRRVFVSCVNKDKGGVARKACKAACIG 223

Query: 43  CGVCEPECPVDAIKPDTEPGLELW 66
           CG C  ECP DAI  +       +
Sbjct: 224 CGKCAKECPFDAITVENNLAYIDY 247


>gi|323952178|gb|EGB48051.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323956682|gb|EGB52419.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 184

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|313905309|ref|ZP_07838676.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium cellulosolvens 6]
 gi|313469920|gb|EFR65255.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium cellulosolvens 6]
          Length = 605

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + C  CK   C+++ CP   F +G     I    C+ CGVC+  C  ++I  
Sbjct: 525 VDQDKCRGCK--SCMKIGCPSISFRDG--KAHIDETLCVGCGVCQQMCAFESIIN 575


>gi|317056009|ref|YP_004104476.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Ruminococcus albus 7]
 gi|315448278|gb|ADU21842.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 7]
          Length = 578

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C+ CK   C+++ CP    ++G   + I   +C+ CG+C   C + AIK + E
Sbjct: 528 DKCVGCK--QCLKIGCPAISIHDG--KMVIDHTQCVGCGICTEMCKLGAIKGNEE 578


>gi|296133404|ref|YP_003640651.1| aldo/keto reductase [Thermincola sp. JR]
 gi|296031982|gb|ADG82750.1| aldo/keto reductase [Thermincola potens JR]
          Length = 315

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V + C  C    C E CPV      +  +++  ++C+ CG C   CP   +
Sbjct: 264 VEDWCQGC--ARCTEKCPVGALAIRKGKVSVDREKCLLCGYCGTACPEFCL 312


>gi|283781842|ref|YP_003372597.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283440295|gb|ADB18737.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 559

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVD 53
           VT  C  C    C++ CPV  + +      +    D+CI C  C   CP +
Sbjct: 117 VTTACHHCVEPGCLQGCPVQAYDKDPLTGIVRHLDDQCIGCQYCILMCPYE 167


>gi|257457541|ref|ZP_05622708.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Treponema
           vincentii ATCC 35580]
 gi|257444927|gb|EEV20003.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Treponema
           vincentii ATCC 35580]
          Length = 274

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 5   VTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VT+   C  C    CV VCP+    + +  L   P  CI C  C   C   A   D    
Sbjct: 198 VTDKAKCDNC--GVCVAVCPMGSIDKNDVSLV--PGICIKCQACIVYCHTKAKSFDDPLF 253

Query: 63  LELWLKINSEY 73
           L     +   Y
Sbjct: 254 LSHKAMLEQNY 264


>gi|253573796|ref|ZP_04851139.1| nitrate reductase, beta subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847324|gb|EES75329.1| nitrate reductase, beta subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 515

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y+    C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  +
Sbjct: 176 MMYL-PRLCEHCLNPSCVASCPSGAIYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFN 234

Query: 59  TEPGLEL 65
            +     
Sbjct: 235 WKTNKAE 241


>gi|153955192|ref|YP_001395957.1| hypothetical protein CKL_2574 [Clostridium kluyveri DSM 555]
 gi|219855624|ref|YP_002472746.1| hypothetical protein CKR_2281 [Clostridium kluyveri NBRC 12016]
 gi|146348050|gb|EDK34586.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219569348|dbj|BAH07332.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 245

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            CI C    C  VCPV      +   A    +C+ C  C   CPV AI+ 
Sbjct: 184 KCIGC--GKCAAVCPVSDIRMEKGRPAWQHKKCMQCCACINRCPVKAIQY 231


>gi|77460730|ref|YP_350237.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77384733|gb|ABA76246.1| putative electron transpor-related protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 404

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+    CI C  T C++ CP+D      +    +  DEC  C +C   CPVD I+    
Sbjct: 74  AYIREAECIGC--TKCIQACPIDAIVGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMHPL 131

Query: 61  P 61
           P
Sbjct: 132 P 132



 Score = 33.8 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC     
Sbjct: 103 MHTVIIDECTGCDL--CVAPCPVDCIEMHP 130


>gi|114561799|ref|YP_749312.1| twin-arginine translocation pathway signal [Shewanella
           frigidimarina NCIMB 400]
 gi|114333092|gb|ABI70474.1| Twin-arginine translocation pathway signal [Shewanella
           frigidimarina NCIMB 400]
          Length = 228

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  +    ++++ D+C+ C  C   CP D
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKESGIVSVNADKCVGCQYCILACPYD 143


>gi|66818078|ref|XP_642732.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           discoideum AX4]
 gi|60470829|gb|EAL68801.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           discoideum AX4]
          Length = 210

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRQDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K++ L +  + +  
Sbjct: 166 V--EGPNFEFTTETRLEL------LYNKEKLLANGDRWETE 198


>gi|308070138|ref|YP_003871743.1| nitrate reductase subunit beta [Paenibacillus polymyxa E681]
 gi|305859417|gb|ADM71205.1| Nitrate reductase beta chain [Paenibacillus polymyxa E681]
          Length = 525

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 183 CEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFNWQTNKAE 241


>gi|238749925|ref|ZP_04611429.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia rohdei ATCC 43380]
 gi|238711854|gb|EEQ04068.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia rohdei ATCC 43380]
          Length = 180

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 57  CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGAMNVVTKQVEVMF 114


>gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
 gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
          Length = 622

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C   CP        ++   I+ ++CI CG C  +CP  AI  +
Sbjct: 568 IDPEICKGCSK--CARNCPAGAIEGVLKSPYHINQEKCIKCGACMEQCPFKAIHIE 621


>gi|239624249|ref|ZP_04667280.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239520635|gb|EEQ60501.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 175

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C+ C+   C+  CPV C Y+             CI C  C   CP  A +     
Sbjct: 60  ACMHCQDAPCIMACPVGCLYKSNKTGMTVYDNTNCIGCRSCGMACPFGAPRYRPSD 115


>gi|254421090|ref|ZP_05034814.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp.
           BAL3]
 gi|196187267|gb|EDX82243.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp.
           BAL3]
          Length = 163

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P  E  ++   E       +  K   L +  + +    K
Sbjct: 119 V--EGPNSEYAVETREEL------LFDKARLLDNGDRWERQIAK 154


>gi|183599995|ref|ZP_02961488.1| hypothetical protein PROSTU_03520 [Providencia stuartii ATCC 25827]
 gi|188022274|gb|EDU60314.1| hypothetical protein PROSTU_03520 [Providencia stuartii ATCC 25827]
          Length = 223

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+H  CV+VCP    +  +    + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCEHAPCVDVCPTGASFIDKTTGIVDVNPDLCVGCQYCIAACPYR 138


>gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8]
          Length = 626

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  + C  C    C   CP +    E      I  ++C+ CG+C  +CP  AI
Sbjct: 571 YVINPDICKGC--GLCARSCPQNAITGERGKPYTIDQEKCVKCGLCASKCPFKAI 623



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            I+PD C  CG+C   CP +AI  +
Sbjct: 560 CPSGMCT-AFKKYVINPDICKGCGLCARSCPQNAITGE 596


>gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 603

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  ENC  C    C + CP     +E +    I   +CI C  C   C  +AI
Sbjct: 552 VNEENCQKC--GLCFKACPAGAVSWEKKQTAKIDVSKCIKCRSCILACRFNAI 602


>gi|89896267|ref|YP_519754.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219667929|ref|YP_002458364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89335715|dbj|BAE85310.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219538189|gb|ACL19928.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 182

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +   C+ C ++ CV+ CP     + E+ +  +  ++C+ C  C   CP  A
Sbjct: 55  IPSLCMHCGNSPCVDACPTGASQQREDGIVWVEENKCVGCKACVMACPYGA 105


>gi|268325215|emb|CBH38803.1| heterodisulfide reductase subunit A [uncultured archaeon]
          Length = 728

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  E CI C    C EVCP       E      ++   C  CG C   CP  A       
Sbjct: 620 INEEICIGC--GTCAEVCPYGALELDEVMQVMTVNEAVCKGCGGCNSVCPSGAATMKHYR 677

Query: 62  GLELWLKINS 71
             +++ ++ +
Sbjct: 678 DRQVYAQLEA 687


>gi|295689616|ref|YP_003593309.1| NADH-quinone oxidoreductase subunit I [Caulobacter segnis ATCC
           21756]
 gi|295431519|gb|ADG10691.1| NADH-quinone oxidoreductase, chain I [Caulobacter segnis ATCC
           21756]
          Length = 163

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPAQAITIEAEPREDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                P +E   +   E          K+  L +  + + +  K
Sbjct: 119 V--EGPNIEFATETREEL------YYDKERLLDNGDRWERLIAK 154


>gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 626

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  + C  C    C   CP +    E      I  ++C+ CG+C  +CP  AI
Sbjct: 571 YVINPDICKGC--GLCARSCPQNAITGERGKPYTIDQEKCVKCGLCASKCPFKAI 623



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            I+PD C  CG+C   CP +AI  +
Sbjct: 560 CPSGMCT-AFKKYVINPDICKGCGLCARSCPQNAITGE 596


>gi|163753875|ref|ZP_02160998.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Kordia
           algicida OT-1]
 gi|161326089|gb|EDP97415.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Kordia
           algicida OT-1]
          Length = 1055

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLE 64
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + +        E
Sbjct: 882 CQHCNHAPCETVCPVAATSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNKNDE 941

Query: 65  LWLKINSEY 73
               +N + 
Sbjct: 942 FDYHMNDDL 950


>gi|160933483|ref|ZP_02080871.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753]
 gi|156867360|gb|EDO60732.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753]
          Length = 313

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           M Y   +NCI C    CV+ C           L      C  CG C   C   A+  
Sbjct: 61  MVY--PKNCIGC--GACVKACKAGARTIENGILHYDRSVCTGCGACAQSCFTGALVM 113


>gi|91790139|ref|YP_551091.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91699364|gb|ABE46193.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 476

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C  T CV+VCP                ECI C  C   C     K +   GL  + 
Sbjct: 270 ACVDC--TLCVQVCPTGIDIRNGLQY-----ECIGCAACIDACDGVMDKMNYPRGLIRFT 322

Query: 68  KINSEYATQWPNI 80
             N+  A  W  +
Sbjct: 323 TQNA-LAQHWNRL 334


>gi|15898618|ref|NP_343223.1| hypothetical protein SSO1816 [Sulfolobus solfataricus P2]
 gi|284175944|ref|ZP_06389913.1| hypothetical protein Ssol98_14978 [Sulfolobus solfataricus 98/2]
 gi|13815071|gb|AAK42013.1| Hypothetical protein SSO1816 [Sulfolobus solfataricus P2]
 gi|261603156|gb|ACX92759.1| conserved hypothetical protein [Sulfolobus solfataricus 98/2]
          Length = 476

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK  DC   CPV        F+        +C+  G C   CP + I          
Sbjct: 403 CLNCKTVDCANACPVGLTDMRAWFIKKGEFKSFKCVGVGDCVEVCPYNNITFYDVRSWIK 462


>gi|15679545|ref|NP_276662.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622670|gb|AAB86023.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 630

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           M Y++  E C  C    C++ CP +      +    I  D C+ CG C   C  DA+
Sbjct: 554 MHYMIDPEKCDGC--MACIKTCPAEAINGSRDEVHVIDQDGCLKCGSCLDICKRDAV 608


>gi|17545725|ref|NP_519127.1| ferredoxin [Ralstonia solanacearum GMI1000]
 gi|17428019|emb|CAD14708.1| probable ferredoxin [4fe-4s] protein [Ralstonia solanacearum
           GMI1000]
          Length = 268

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E CI C  T C++ CPVD           +  D C  C +C   CPVD I  
Sbjct: 83  ALIDPERCIGC--TLCIQACPVDAIVGAPKAMHVVLEDWCTGCDLCVAPCPVDCIDM 137


>gi|34556567|ref|NP_906382.1| hypothetical protein WS0117 [Wolinella succinogenes DSM 1740]
 gi|400894|sp|P31076|PSRB_WOLSU RecName: Full=Polysulfide reductase chain B; AltName: Full=Sulfur
           reductase chain B
 gi|48527|emb|CAA46177.1| psrB [Wolinella succinogenes]
 gi|34482281|emb|CAE09282.1| NRFC [Wolinella succinogenes]
          Length = 191

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           ++C+ C++T CV VCP    Y  E+ +  ++ D C+ C  C   CP  A   D
Sbjct: 59  QSCVQCENTPCVSVCPTKASYVNEDGIVSVNVDLCVGCLYCIAACPYQARYVD 111


>gi|322780735|gb|EFZ09992.1| hypothetical protein SINV_04706 [Solenopsis invicta]
          Length = 286

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 106 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMSKCIYCGFCQEACPVDAI 163

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 164 VEGP----------NFEFSTETHEEMLYNKEKLLNNGDKWESE 196


>gi|317485154|ref|ZP_07944036.1| iron only hydrogenase large subunit domain-containing protein
          [Bilophila wadsworthia 3_1_6]
 gi|316923689|gb|EFV44893.1| iron only hydrogenase large subunit domain-containing protein
          [Bilophila wadsworthia 3_1_6]
          Length = 417

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDE-CIDCGVCEPECPVDAIK 56
          +  E CI C    C + CP    Y E      I   E CI+CG C   CP  AI 
Sbjct: 30 IDQEKCIGCD--TCQQYCPTGAIYGETFEPHTIKYRELCINCGQCLTHCPSMAIY 82



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT-EPGLELWLKI 69
          F+ I  ++CI C  C+  CP  AI  +T EP    + ++
Sbjct: 27 FVEIDQEKCIGCDTCQQYCPTGAIYGETFEPHTIKYREL 65


>gi|288941461|ref|YP_003443701.1| cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
 gi|288896833|gb|ADC62669.1| Cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
          Length = 296

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E C  C    C EVC  +        + +  D C  CG C   CP  AI  +
Sbjct: 64  VDAERCTAC--GRCAEVCRFNALAVVGGAVLVFDDLCHGCGRCTWICPEQAIHEE 116


>gi|225017724|ref|ZP_03706916.1| hypothetical protein CLOSTMETH_01653 [Clostridium methylpentosum
           DSM 5476]
 gi|224949517|gb|EEG30726.1| hypothetical protein CLOSTMETH_01653 [Clostridium methylpentosum
           DSM 5476]
          Length = 263

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T  CI C+   C + CP D  +       I  ++C  CG C   CPV  I 
Sbjct: 212 TNGCIGCRK--CEKTCPYDAIHVDNFLARIDYEKCTACGKCVEVCPVSCIH 260



 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  + DC   C  D  +  +    + P++C  CG C  ECP   I
Sbjct: 140 GCLGYGDCTHACIFDALHVIDGVAYVDPEKCTGCGQCAQECPKGLI 185


>gi|123443024|ref|YP_001006998.1| 4Fe-4S ferrodoxin [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122089985|emb|CAL12842.1| 4Fe-4S ferrodoxin [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 180

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 57  CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGAMNVVTKQVEVMF 114


>gi|119899348|ref|YP_934561.1| putative benzoyl-CoA oxygenase component A [Azoarcus sp. BH72]
 gi|119671761|emb|CAL95675.1| putative Benzoyl-CoA oxygenase component A [Azoarcus sp. BH72]
          Length = 416

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  E CI C    C E+CPVD          +  D C  C  C   CP  AI
Sbjct: 16 IDPEICIRCN--TCEEICPVDAITHDNLNYVVKFDVCNGCLACISPCPTGAI 65


>gi|23501697|ref|NP_697824.1| NADH dehydrogenase subunit I [Brucella suis 1330]
 gi|161618774|ref|YP_001592661.1| NADH dehydrogenase subunit I [Brucella canis ATCC 23365]
 gi|254704125|ref|ZP_05165953.1| NADH dehydrogenase subunit I [Brucella suis bv. 3 str. 686]
 gi|260566626|ref|ZP_05837096.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 4 str. 40]
 gi|261754791|ref|ZP_05998500.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 3 str.
           686]
 gi|81752799|sp|Q8G1A9|NUOI_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030924|sp|A9MAI7|NUOI_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|23347620|gb|AAN29739.1| NADH dehydrogenase I, I subunit [Brucella suis 1330]
 gi|161335585|gb|ABX61890.1| NADH-quinone oxidoreductase, chain I [Brucella canis ATCC 23365]
 gi|260156144|gb|EEW91224.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 4 str. 40]
 gi|261744544|gb|EEY32470.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 3 str.
           686]
          Length = 163

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKDKLLANGDRWERE 151


>gi|331270189|ref|YP_004396681.1| anaerobic sulfite reductase subunit C [Clostridium botulinum
           BKT015925]
 gi|329126739|gb|AEB76684.1| anaerobic sulfite reductase subunit C [Clostridium botulinum
           BKT015925]
          Length = 304

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E C  C     +E C +   Y+ E+ +AI  ++CI+CG C   C   A++   E  
Sbjct: 170 EKCKNCGKCAVIEKCRMKAVYKVEDRVAIDREKCINCGKCIENCYFSAMEVKEEGM 225


>gi|331269914|ref|YP_004396406.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum BKT015925]
 gi|329126464|gb|AEB76409.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum BKT015925]
          Length = 315

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           CI C    CV  CPV       +   I+ D  CI C  C+  C   AI
Sbjct: 64  CINC--GACVSACPVGIHTISNSKHVINRDIDCIGCKKCKEACLKSAI 109


>gi|251791770|ref|YP_003006491.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Dickeya zeae Ech1591]
 gi|247540391|gb|ACT09012.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae
           Ech1591]
          Length = 177

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCP D     ++ + +    CI C  C   CP  AI   T    + 
Sbjct: 57  CHQCENAPCASVCPHDALVRHQDSIQVIQSRCIGCKSCVIACPFGAISVVTHTLDDE 113


>gi|332798067|ref|YP_004459566.1| glycyl-radical enzyme activating protein family [Tepidanaerobacter
           sp. Re1]
 gi|332695802|gb|AEE90259.1| glycyl-radical enzyme activating protein family [Tepidanaerobacter
           sp. Re1]
          Length = 301

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            CI C+   CV VCP+D          I   +C  CG+C   CP  A+  
Sbjct: 55  KCIGCR--TCVNVCPLDAISFDFGKHHIDRLKCSSCGICCESCPSGALTC 102


>gi|326424121|ref|NP_761830.2| NrfC protein [Vibrio vulnificus CMCP6]
 gi|319999504|gb|AAO11357.2| NrfC protein [Vibrio vulnificus CMCP6]
          Length = 226

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP      +    
Sbjct: 96  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQVRFFNPVDH 152


>gi|269792306|ref|YP_003317210.1| Fe-S cluster domain-containing protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
 gi|269099941|gb|ACZ18928.1| Fe-S cluster domain protein [Thermanaerovibrio acidaminovorans
          DSM 6589]
          Length = 434

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 1  MTYVV---TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M++ V      C  C +  C++ CP +     +  + I  D CIDCG C   C   A+  
Sbjct: 1  MSHSVRIFESACKGCVN--CLKSCPTEAIRVVDGSIRILKDLCIDCGECLRTCGKKALGL 58

Query: 58 DTEP 61
          + + 
Sbjct: 59 EEDD 62


>gi|225175529|ref|ZP_03729523.1| nitrite and sulphite reductase 4Fe-4S region [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168858|gb|EEG77658.1| nitrite and sulphite reductase 4Fe-4S region [Dethiobacter
           alkaliphilus AHT 1]
          Length = 285

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    C + CP       + + AI  ++CI CG C   CP +A
Sbjct: 165 CISC--GLCADTCPSGAITMEDGYPAIDREKCIHCGECVAVCPTEA 208



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC 43
           +  E CI C   +CV VCP + +  GE  + +     I  
Sbjct: 189 IDREKCIHC--GECVAVCPTEAWQVGERGVRVLAGGRIGQ 226


>gi|218262922|ref|ZP_03477229.1| hypothetical protein PRABACTJOHN_02909 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223064|gb|EEC95714.1| hypothetical protein PRABACTJOHN_02909 [Parabacteroides johnsonii
           DSM 18315]
          Length = 315

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            CI C    C + CP +      N   I   +C  C  C   CP  AI     P  +   
Sbjct: 218 ACIGC--GKCAKECPFEAITVENNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE-- 273

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +  A +       K + P A  +     K E
Sbjct: 274 AAPAVDADKVKPKVAPKPAAPKAEVLKTETPKVE 307



 Score = 37.3 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 25/131 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--------IHPDE-----------CIDCG 44
           V  + C  C    CV+ CP +     +            ++ D+           CI CG
Sbjct: 166 VDEDKCTSC--GACVKACPKNIIELRKKGPKSRRIFVSCVNKDKGGVAKKACANACIGCG 223

Query: 45  VCEPECPVDAIKPDTEPGLELWLKIN--SEYATQWPN--ITTKKESLPSAAKMDGVKQKY 100
            C  ECP +AI  +       + K     +     P   I          A       K 
Sbjct: 224 KCAKECPFEAITVENNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKEAAPAVDADKV 283

Query: 101 EKYFSPNPGGK 111
           +   +P P   
Sbjct: 284 KPKVAPKPAAP 294


>gi|162455867|ref|YP_001618234.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sorangium cellulosum 'So ce 56']
 gi|161166449|emb|CAN97754.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 999

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C  C++  C +VCPV         L  +  + C+    C   CP    + +     +  
Sbjct: 827 PCQHCENAPCEQVCPVAATTHSPEGLNDMAYNRCVGTKYCANNCPYKVRRFNFLEYGQPD 886

Query: 67  LKINSEYATQWPNITTK 83
            +         PN+T +
Sbjct: 887 SEERKM--QFNPNVTVR 901


>gi|156934238|ref|YP_001438154.1| hypothetical protein ESA_02068 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532492|gb|ABU77318.1| hypothetical protein ESA_02068 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 162

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C +VCPV+        + ++   C+ C +C   CP  AI+ 
Sbjct: 12 CHHCEDAPCAQVCPVNAITREAGAIQLNESLCVSCKLCGIACPFGAIEF 60


>gi|313146209|ref|ZP_07808402.1| 4Fe-4S ferredoxin [Bacteroides fragilis 3_1_12]
 gi|313134976|gb|EFR52336.1| 4Fe-4S ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 302

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + VT++CI CK   C  +CPV               +C  C  C   CP  A++ 
Sbjct: 227 PFYVTDDCIGCK--RCERICPVGNVVVIGWRPV-WGMDCTSCLACYHVCPKHAVQY 279


>gi|316933901|ref|YP_004108883.1| NADH-quinone oxidoreductase subunit I [Rhodopseudomonas palustris
           DX-1]
 gi|315601615|gb|ADU44150.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           DX-1]
          Length = 162

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 33/105 (31%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K   L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKARLLANGDRWEREIAK 153


>gi|260174482|ref|ZP_05760894.1| ferredoxin [Bacteroides sp. D2]
 gi|315922749|ref|ZP_07918989.1| ferredoxin [Bacteroides sp. D2]
 gi|313696624|gb|EFS33459.1| ferredoxin [Bacteroides sp. D2]
          Length = 321

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P +C  C  C   CP + I
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNTI 265



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 188


>gi|153877884|ref|ZP_02004404.1| putative nitrite oxidoreductase/nitrate reductase beta subunit
          [Beggiatoa sp. PS]
 gi|152065652|gb|EDN65596.1| putative nitrite oxidoreductase/nitrate reductase beta subunit
          [Beggiatoa sp. PS]
          Length = 215

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
          C  C +  C+  CP    Y+ +    + I  + C     C   CP  
Sbjct: 33 CNHCDNPACLAACPRKAIYKRDEDGIVLIDQERCRGYQECVKACPYK 79


>gi|108743324|dbj|BAE95427.1| putative nitrate reductase beta chain [Streptomyces kanamyceticus]
          Length = 551

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+ E    + +  D C     C   CP   +  
Sbjct: 194 CEHCLNPACVASCPSGAMYKREEDGIVLVDQDHCRGWRKCVTGCPYKKVYF 244


>gi|121997955|ref|YP_001002742.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121589360|gb|ABM61940.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 259

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            C  C    C++ CP    ++ ++ L  + P  C  C +C P CP  A   D
Sbjct: 59  RCQHCDEAPCIDACPTGAVFKRQDGLVLLEPALCSGCELCVPACPYGARWLD 110


>gi|325969844|ref|YP_004246036.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
 gi|323709047|gb|ADY02534.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
          Length = 448

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 20/73 (27%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           +V  E C  C    C EVCPV    E +                      I  D CI CG
Sbjct: 108 FVNEELCTGC--GTCEEVCPVVLPKEYDYGLRGRKAAYIPFDTAVPKKAVIDIDNCIFCG 165

Query: 45  VCEPECPVDAIKP 57
            CE ECP  AI  
Sbjct: 166 QCERECPAGAIDF 178


>gi|309792168|ref|ZP_07686640.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Oscillochloris trichoides DG6]
 gi|308225709|gb|EFO79465.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Oscillochloris trichoides DG6]
          Length = 1036

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           YV+   C  C+   C  VCPV    ++ E    +  + C+    C   CP  
Sbjct: 858 YVMPMTCQHCERAPCELVCPVVATVHDAEGINNMIYNRCVGTKYCSNNCPFK 909


>gi|289523594|ref|ZP_06440448.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503286|gb|EFD24450.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 619

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C+ CK       CP   F E      +    C+ CGVC   CP  AI+  +E 
Sbjct: 563 ETCVGCKFCINFFNCPGLVFDESSKKAYVDERFCVKCGVCVNVCPHGAIQVISEE 617


>gi|261878703|ref|ZP_06005130.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334710|gb|EFA45496.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 56

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ E+C+ C    C++ CPV    EG+   +I PDEC +CG C   CP +AI
Sbjct: 1  MAYVINEDCVAC--GTCIDECPVSAISEGD-IYSIDPDECTECGSCAAVCPQEAI 52


>gi|322419467|ref|YP_004198690.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Geobacter sp. M18]
 gi|320125854|gb|ADW13414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M18]
          Length = 56

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +++++ CI C    C + CPV+   E  +   I  D CIDCG C   CPV AI
Sbjct: 1  MAHIISDECINC--GACDDSCPVNAISEAGSKRTIAADTCIDCGACVDTCPVSAI 53


>gi|170581266|ref|XP_001895608.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158597368|gb|EDP35534.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 206

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 104 EERCIACKL--CEAICPAQAITIEAEARPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 161

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  + +  
Sbjct: 162 VEGP----------NFEYSTETHEELLYNKEKLLLNGDRWEPE 194


>gi|219670687|ref|YP_002461122.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540947|gb|ACL22686.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 192

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           C  C+   CV  CP    + G++       D CI C  C   CP 
Sbjct: 58  CNHCEEAKCVRGCPTGAMHFGDDGTVQHDKDMCIGCKYCVWNCPY 102


>gi|94496472|ref|ZP_01303049.1| NADH-quinone oxidoreductase, chain I [Sphingomonas sp. SKA58]
 gi|94424218|gb|EAT09242.1| NADH-quinone oxidoreductase, chain I [Sphingomonas sp. SKA58]
          Length = 161

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDA+
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAQPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAV 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       I  K + L +  K +
Sbjct: 117 V--EGPNFEFATETREEL------IYDKAKLLENGDKWE 147


>gi|84385487|ref|ZP_00988518.1| iron-sulfur cluster-binding protein [Vibrio splendidus 12B01]
 gi|84379467|gb|EAP96319.1| iron-sulfur cluster-binding protein [Vibrio splendidus 12B01]
          Length = 553

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHKIEINPYLCQGVGTCATSCPT 229

Query: 53  DAIKPD--TEPGLELWLKI---NSEYATQWPNI 80
           +AI          + +++    N E+A     I
Sbjct: 230 EAITYALPNPDDTQKFIERTLANYEHAGGLDPI 262



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           C LC    CV VCP    +       L     +CI CG+CE  CP +
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPEN 464


>gi|91213911|ref|YP_543897.1| hypothetical protein UTI89_C4963 [Escherichia coli UTI89]
 gi|110644706|ref|YP_672436.1| hypothetical protein ECP_4599 [Escherichia coli 536]
 gi|191170829|ref|ZP_03032381.1| benzylsuccinate synthase activating enzyme [Escherichia coli F11]
 gi|218702457|ref|YP_002410086.1| putative pyruvate formate-lyase activating enzyme [Escherichia coli
           IAI39]
 gi|300980186|ref|ZP_07174877.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 200-1]
 gi|301021491|ref|ZP_07185499.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 69-1]
 gi|23954274|emb|CAD42072.1| hypothetical protein [Escherichia coli]
 gi|91075485|gb|ABE10366.1| hypothetical protein UTI89_C4963 [Escherichia coli UTI89]
 gi|110346298|gb|ABG72535.1| hypothetical protein ECP_4599 [Escherichia coli 536]
 gi|190909053|gb|EDV68640.1| benzylsuccinate synthase activating enzyme [Escherichia coli F11]
 gi|218372443|emb|CAR20319.1| Putative pyruvate formate-lyase activating enzyme [Escherichia coli
           IAI39]
 gi|300307843|gb|EFJ62363.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 200-1]
 gi|300398036|gb|EFJ81574.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 69-1]
 gi|307629428|gb|ADN73732.1| Putative pyruvate formate-lyase activating enzyme [Escherichia coli
           UM146]
 gi|315294543|gb|EFU53891.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 153-1]
 gi|324015113|gb|EGB84332.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 60-1]
 gi|330907951|gb|EGH36470.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86]
          Length = 315

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
           + CI C   DCV VCP    Y     GE    ++ ++ CI C  CE  C  +A  I    
Sbjct: 58  DKCINC--GDCVNVCPAGIHYRAEVNGEMKHFVNRNKDCIGCRKCEEICTQNALDIMGKD 115

Query: 60  EPGLELWLKINSEY 73
               EL   I  +Y
Sbjct: 116 VTVSELMEIIMQDY 129


>gi|332883619|gb|EGK03900.1| hypothetical protein HMPREF9456_01441 [Dysgonomonas mossii DSM
          22836]
          Length = 55

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG+    I PD C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIAC--GTCIDECPVNAISEGD-IYKIDPDACTDCGTCADACPTEAIHP 54


>gi|307611754|emb|CBX01462.1| hypothetical protein LPW_31501 [Legionella pneumophila 130b]
          Length = 204

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD      +   AI   EC  CG+C   CPVD I+ 
Sbjct: 81  EDECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEM 131


>gi|253578107|ref|ZP_04855379.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850425|gb|EES78383.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 358

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPV-----DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + C+ C    CV+ CPV     D              +CI C  C+  CP  AI
Sbjct: 299 PYIEADKCVRC--GICVQSCPVPGKAVDFRKGKGKPPVYDYRKCIRCFCCQEMCPKKAI 355


>gi|220904931|ref|YP_002480243.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869230|gb|ACL49565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 168

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C++  CV+ CP       E+ +  +    C+ C  C   CP  A + + +
Sbjct: 56  SCFHCENPWCVKACPTGAMRRREDGIVYVEKKFCVGCKACITACPWAAPQWNPD 109


>gi|197283980|ref|YP_002149852.1| oxidoreductase, Fe-S subunit [Proteus mirabilis HI4320]
 gi|194681467|emb|CAR40306.1| putative oxidoreductase, Fe-S subunit [Proteus mirabilis HI4320]
          Length = 223

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   C+ VCP    +  E+   + ++ ++CI C  C   CP  
Sbjct: 91  SCQQCEDAPCISVCPTGASWRDESNGIVRVNKEKCIGCSYCISACPYQ 138



 Score = 37.3 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAI 55
           V  E CI C +  C+  CP    Y           + C++  +       C   CP +A+
Sbjct: 120 VNKEKCIGCSY--CISACPYQVRYLNPVTHVADKCDFCLESRLQKGFPPICVSACPQNAL 177

Query: 56  KP--DTEPGLELWLK 68
               +  P ++ WLK
Sbjct: 178 LFGREDSPQIQQWLK 192


>gi|157375704|ref|YP_001474304.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157318078|gb|ABV37176.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 228

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C+   CV  CPV+     E+F     I P +CI C  C   CP    +    P
Sbjct: 102 CLQCEDAPCVAACPVNANKASEDFGFVRDIDPAKCIGCMQCIEACPQTPKRVQWNP 157


>gi|308271717|emb|CBX28325.1| hypothetical protein N47_G36490 [uncultured Desulfobacterium sp.]
          Length = 406

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C    C EVC        ++ + I  ++C  CGVC   C   A+  D    +
Sbjct: 343 VDQGKCICC--GVCEEVCNWGAIKVIDDTVDIVKEKCEGCGVCVCSCTEGALWLDNVDLI 400

Query: 64  EL 65
           + 
Sbjct: 401 KK 402



 Score = 33.8 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
                +G+  +++   +CI CGVCE  C   AIK   +   
Sbjct: 331 TYGKTKGKIVVSVDQGKCICCGVCEEVCNWGAIKVIDDTVD 371


>gi|261749152|ref|YP_003256837.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497244|gb|ACX83694.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 976

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
           C  C++  C  VCPV     GE    +   + C+    C   CP    + + 
Sbjct: 805 CQHCENAPCETVCPVGATSHGEQGQNMMAYNRCVGTRYCANNCPYKVRRFNW 856


>gi|257437596|ref|ZP_05613351.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Faecalibacterium prausnitzii A2-165]
 gi|257199903|gb|EEU98187.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Faecalibacterium prausnitzii A2-165]
          Length = 251

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  NCI C    C   CPV         +   P +CI C  C   CPV A   D
Sbjct: 176 VNANCISC--GLCARECPVGAISYDNFTVT-DPSKCITCMRCVSRCPVHARSVD 226


>gi|239624676|ref|ZP_04667707.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridiales bacterium 1_7_47_FAA]
 gi|239521062|gb|EEQ60928.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridiales bacterium 1_7_47FAA]
          Length = 266

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 16/96 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
          M ++  + C  C    CV+VC + C    E          C+ C  C   CP  A+  D 
Sbjct: 1  MIHINRDLCTGC--GVCVKVCSMACIVLEEEKAVFKGEKRCMTCAHCMAVCPQKAVCTDR 58

Query: 60 EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                    NSE     P+I      L S  +M  
Sbjct: 59 YD--------NSESVEMTPDI-----PLASPEEMKN 81


>gi|254423403|ref|ZP_05037121.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190892|gb|EDX85856.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 533

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 27/113 (23%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDC-----GVCEPECPVD 53
           M Y + ENCI C    C  +CP D        +   I P  C  C      +C   C   
Sbjct: 1   MNYTIKENCIACD--VCQPLCPQDAIKPNSESDGYWIDPTLCDGCPDLEIPLCVSACDTG 58

Query: 54  AIKPDTE----------PGLELWLKINSEYAT------QWP--NITTKKESLP 88
           A+KP             P     + +N + +        W   NI  ++++LP
Sbjct: 59  ALKPLPPKKGRCKSSLLPVAIPSIFLNRKTSPFASCLVMWETCNILAQRQALP 111


>gi|29348365|ref|NP_811868.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569265|ref|ZP_04846675.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
           1_1_6]
 gi|29340269|gb|AAO78062.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251841284|gb|EES69365.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
           1_1_6]
          Length = 299

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + + CI C    C+ VC  +  +   N L+IH + C DCG C   C   A+  
Sbjct: 50  IEDKCIHCF--SCITVCEYEVLFIDSNRLSIHRERCTDCGKCTERCTSGALSW 100


>gi|62289759|ref|YP_221552.1| NADH dehydrogenase subunit I [Brucella abortus bv. 1 str. 9-941]
 gi|82699687|ref|YP_414261.1| NADH dehydrogenase subunit I [Brucella melitensis biovar Abortus
           2308]
 gi|148560593|ref|YP_001258788.1| NADH dehydrogenase subunit I [Brucella ovis ATCC 25840]
 gi|189024004|ref|YP_001934772.1| NADH dehydrogenase subunit I [Brucella abortus S19]
 gi|225627307|ref|ZP_03785344.1| NADH-quinone oxidoreductase, chain I [Brucella ceti str. Cudo]
 gi|225852326|ref|YP_002732559.1| NADH dehydrogenase subunit I [Brucella melitensis ATCC 23457]
 gi|237815246|ref|ZP_04594244.1| NADH-quinone oxidoreductase, chain I [Brucella abortus str. 2308 A]
 gi|254689066|ref|ZP_05152320.1| NADH dehydrogenase subunit I [Brucella abortus bv. 6 str. 870]
 gi|254693548|ref|ZP_05155376.1| NADH dehydrogenase subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|254697200|ref|ZP_05159028.1| NADH dehydrogenase subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701578|ref|ZP_05163406.1| NADH dehydrogenase subunit I [Brucella suis bv. 5 str. 513]
 gi|254706975|ref|ZP_05168803.1| NADH dehydrogenase subunit I [Brucella pinnipedialis M163/99/10]
 gi|254709918|ref|ZP_05171729.1| NADH dehydrogenase subunit I [Brucella pinnipedialis B2/94]
 gi|254713919|ref|ZP_05175730.1| NADH dehydrogenase subunit I [Brucella ceti M644/93/1]
 gi|254717023|ref|ZP_05178834.1| NADH dehydrogenase subunit I [Brucella ceti M13/05/1]
 gi|254718919|ref|ZP_05180730.1| NADH dehydrogenase subunit I [Brucella sp. 83/13]
 gi|254730096|ref|ZP_05188674.1| NADH dehydrogenase subunit I [Brucella abortus bv. 4 str. 292]
 gi|256031411|ref|ZP_05445025.1| NADH dehydrogenase subunit I [Brucella pinnipedialis M292/94/1]
 gi|256060922|ref|ZP_05451080.1| NADH dehydrogenase subunit I [Brucella neotomae 5K33]
 gi|256113345|ref|ZP_05454203.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 3 str. Ether]
 gi|256159532|ref|ZP_05457300.1| NADH dehydrogenase subunit I [Brucella ceti M490/95/1]
 gi|256254819|ref|ZP_05460355.1| NADH dehydrogenase subunit I [Brucella ceti B1/94]
 gi|256257315|ref|ZP_05462851.1| NADH dehydrogenase subunit I [Brucella abortus bv. 9 str. C68]
 gi|256264175|ref|ZP_05466707.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369242|ref|YP_003106750.1| NADH dehydrogenase subunit I [Brucella microti CCM 4915]
 gi|260168545|ref|ZP_05755356.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|260545491|ref|ZP_05821232.1| NADH-quinone oxidoreductase subunit I [Brucella abortus NCTC 8038]
 gi|260754564|ref|ZP_05866912.1| NDH-1 subunit I [Brucella abortus bv. 6 str. 870]
 gi|260757785|ref|ZP_05870133.1| NDH-1 subunit I [Brucella abortus bv. 4 str. 292]
 gi|260761610|ref|ZP_05873953.1| NDH-1 subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883591|ref|ZP_05895205.1| NADH-quinone oxidoreductase subunit I [Brucella abortus bv. 9 str.
           C68]
 gi|261213813|ref|ZP_05928094.1| NDH-1 subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|261218830|ref|ZP_05933111.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M13/05/1]
 gi|261222000|ref|ZP_05936281.1| NADH-quinone oxidoreductase subunit I [Brucella ceti B1/94]
 gi|261314438|ref|ZP_05953635.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M163/99/10]
 gi|261317464|ref|ZP_05956661.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           B2/94]
 gi|261321671|ref|ZP_05960868.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M644/93/1]
 gi|261324922|ref|ZP_05964119.1| NADH-quinone oxidoreductase subunit I [Brucella neotomae 5K33]
 gi|261752131|ref|ZP_05995840.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 5 str.
           513]
 gi|261758018|ref|ZP_06001727.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|265983906|ref|ZP_06096641.1| NADH-quinone oxidoreductase subunit I [Brucella sp. 83/13]
 gi|265988500|ref|ZP_06101057.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M292/94/1]
 gi|265994751|ref|ZP_06107308.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 3
           str. Ether]
 gi|265997964|ref|ZP_06110521.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M490/95/1]
 gi|294852167|ref|ZP_06792840.1| NADH dehydrogenase I subunit I [Brucella sp. NVSL 07-0026]
 gi|297248164|ref|ZP_06931882.1| NADH dehydrogenase I subunit I [Brucella abortus bv. 5 str. B3196]
 gi|306838233|ref|ZP_07471085.1| NADH-quinone oxidoreductase, chain I [Brucella sp. NF 2653]
 gi|306841952|ref|ZP_07474630.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO2]
 gi|306843747|ref|ZP_07476346.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO1]
 gi|75505301|sp|Q57DU3|NUOI_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502518|sp|Q2YNF5|NUOI_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918785|sp|A5VPZ1|NUOI_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737383|sp|B2S551|NUOI_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254767832|sp|C0RIE7|NUOI_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|62195891|gb|AAX74191.1| NuoI, NADH dehydrogenase I, I subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615788|emb|CAJ10786.1| 7Fe ferredoxin:3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur
           binding domain [Brucella melitensis biovar Abortus 2308]
 gi|148371850|gb|ABQ61829.1| NADH dehydrogenase I, I subunit [Brucella ovis ATCC 25840]
 gi|189019576|gb|ACD72298.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225617312|gb|EEH14357.1| NADH-quinone oxidoreductase, chain I [Brucella ceti str. Cudo]
 gi|225640691|gb|ACO00605.1| NADH-quinone oxidoreductase, chain I [Brucella melitensis ATCC
           23457]
 gi|237790083|gb|EEP64293.1| NADH-quinone oxidoreductase, chain I [Brucella abortus str. 2308 A]
 gi|255999402|gb|ACU47801.1| NADH dehydrogenase subunit I [Brucella microti CCM 4915]
 gi|260096898|gb|EEW80773.1| NADH-quinone oxidoreductase subunit I [Brucella abortus NCTC 8038]
 gi|260668103|gb|EEX55043.1| NDH-1 subunit I [Brucella abortus bv. 4 str. 292]
 gi|260672042|gb|EEX58863.1| NDH-1 subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674672|gb|EEX61493.1| NDH-1 subunit I [Brucella abortus bv. 6 str. 870]
 gi|260873119|gb|EEX80188.1| NADH-quinone oxidoreductase subunit I [Brucella abortus bv. 9 str.
           C68]
 gi|260915420|gb|EEX82281.1| NDH-1 subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|260920584|gb|EEX87237.1| NADH-quinone oxidoreductase subunit I [Brucella ceti B1/94]
 gi|260923919|gb|EEX90487.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M13/05/1]
 gi|261294361|gb|EEX97857.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M644/93/1]
 gi|261296687|gb|EEY00184.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           B2/94]
 gi|261300902|gb|EEY04399.1| NADH-quinone oxidoreductase subunit I [Brucella neotomae 5K33]
 gi|261303464|gb|EEY06961.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M163/99/10]
 gi|261738002|gb|EEY25998.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|261741884|gb|EEY29810.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 5 str.
           513]
 gi|262552432|gb|EEZ08422.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M490/95/1]
 gi|262765864|gb|EEZ11653.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 3
           str. Ether]
 gi|263094393|gb|EEZ18238.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660697|gb|EEZ30958.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M292/94/1]
 gi|264662498|gb|EEZ32759.1| NADH-quinone oxidoreductase subunit I [Brucella sp. 83/13]
 gi|294820756|gb|EFG37755.1| NADH dehydrogenase I subunit I [Brucella sp. NVSL 07-0026]
 gi|297175333|gb|EFH34680.1| NADH dehydrogenase I subunit I [Brucella abortus bv. 5 str. B3196]
 gi|306275938|gb|EFM57651.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO1]
 gi|306287985|gb|EFM59393.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO2]
 gi|306406677|gb|EFM62904.1| NADH-quinone oxidoreductase, chain I [Brucella sp. NF 2653]
 gi|326408833|gb|ADZ65898.1| 7Fe ferredoxin [Brucella melitensis M28]
 gi|326538549|gb|ADZ86764.1| NADH-quinone oxidoreductase, chain I [Brucella melitensis M5-90]
          Length = 163

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKDKLLANGDRWERE 151


>gi|25027851|ref|NP_737905.1| putative respiratory nitrate reductase beta chain [Corynebacterium
           efficiens YS-314]
 gi|259506242|ref|ZP_05749144.1| respiratory nitrate reductase, beta subunit [Corynebacterium
           efficiens YS-314]
 gi|23493134|dbj|BAC18105.1| putative respiratory nitrate reductase beta chain [Corynebacterium
           efficiens YS-314]
 gi|259166146|gb|EEW50700.1| respiratory nitrate reductase, beta subunit [Corynebacterium
           efficiens YS-314]
          Length = 533

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSSCPSGAMYKRAEDGIVLVDQDHCRGWRMCVSGCPYKKVYF 234


>gi|239831694|ref|ZP_04680023.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum intermedium LMG
           3301]
 gi|239823961|gb|EEQ95529.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum intermedium LMG
           3301]
          Length = 163

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKEKLLANGDRWERE 151


>gi|189460626|ref|ZP_03009411.1| hypothetical protein BACCOP_01267 [Bacteroides coprocola DSM 17136]
 gi|189432585|gb|EDV01570.1| hypothetical protein BACCOP_01267 [Bacteroides coprocola DSM 17136]
          Length = 323

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           V  E+C +C   +C+EVCP       ++   I    + CI C  C  ECP  A   +T 
Sbjct: 248 VCNEDCFVC--GECIEVCPTHAIRISDDGSHIETDVNRCIRCCACVKECPNGARIYNTP 304


>gi|116748620|ref|YP_845307.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697684|gb|ABK16872.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 557

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T    + C  C    CV +CP         E    + + P  C  CGVC   C   A+
Sbjct: 482 TLADEDACRGC--GLCVALCPYGALEIVRTEKGRKVKVIPVACKGCGVCAATCYQHAL 537


>gi|291613334|ref|YP_003523491.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583446|gb|ADE11104.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
          Length = 430

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+      CV  CP             I+P  CI  G CE  CP DAI
Sbjct: 57  CLG--AGSCVAACPEGALGMINGKGTLINPTVCIGHGACEAACPHDAI 102


>gi|260588677|ref|ZP_05854590.1| tRNA (guanine-N(1)-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|331081974|ref|ZP_08331102.1| hypothetical protein HMPREF0992_00026 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541152|gb|EEX21721.1| tRNA (guanine-N(1)-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|330405569|gb|EGG85099.1| hypothetical protein HMPREF0992_00026 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 478

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + E C  C    CV+ CPV    +    L I   +CI C  C   C   A   D     
Sbjct: 407 FIKERCTGC--QVCVQKCPVYAISKD--TLEIDERKCISCMRCALLCKKGARAYDASAVK 462

Query: 64  ELWLK 68
               +
Sbjct: 463 AHLEE 467


>gi|218549331|ref|YP_002383122.1| pyruvate formate-lyase activating enzyme [Escherichia fergusonii
           ATCC 35469]
 gi|218356872|emb|CAQ89503.1| Putative pyruvate formate-lyase activating enzyme [Escherichia
           fergusonii ATCC 35469]
 gi|324114146|gb|EGC08119.1| glycyl-radical enzyme activating protein family protein
           [Escherichia fergusonii B253]
          Length = 315

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
           + CI C   DCV VCP    Y     GE    ++ ++ CI C  CE  C  +A  I    
Sbjct: 58  DKCINC--GDCVNVCPAGIHYRAEVNGEMKHFVNRNKDCIGCRKCEEICTQNALDIMGKD 115

Query: 60  EPGLELWLKINSEY 73
               EL   I  +Y
Sbjct: 116 VTVSELMEIIMQDY 129


>gi|134100604|ref|YP_001106265.1| nitrate reductase beta chain [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006389|ref|ZP_06564362.1| nitrate reductase beta chain [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913227|emb|CAM03340.1| nitrate reductase beta chain [Saccharopolyspora erythraea NRRL
           2338]
          Length = 523

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  ++C    +C   CP   +  
Sbjct: 186 CEHCLNPSCVASCPSGAMYKRVEDGIVLVDQEQCRGWRMCVSGCPYKKVYF 236


>gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 623

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            E C  C    C  +CPV     + +    ++  +CI CG C   CP  AI
Sbjct: 572 KEKCKGCSK--CARICPVQAIEGKIKEPYTVNQSKCIKCGACLEVCPFAAI 620


>gi|18977042|ref|NP_578399.1| putative ATPase RIL [Pyrococcus furiosus DSM 3638]
 gi|18892677|gb|AAL80794.1| RNase l inhibitor [Pyrococcus furiosus DSM 3638]
          Length = 590

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E      I    C  CG+C  +CP  AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFKAI 66


>gi|320109200|ref|YP_004184790.1| Fe-S-cluster-containing hydrogenase [Terriglobus saanensis SP1PR4]
 gi|319927721|gb|ADV84796.1| Fe-S-cluster-containing hydrogenase [Terriglobus saanensis SP1PR4]
          Length = 1066

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           C  C++  C +VCPV         +  +  + C+    C   CP  
Sbjct: 896 CQHCENAGCEQVCPVGATVHTPEGINTMVYNRCVGTRYCSNNCPYK 941


>gi|283853098|ref|ZP_06370353.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
 gi|283571496|gb|EFC19501.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
          Length = 491

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           TY +    C  C  T C +VCPV+C    +     I   +CI CG C  +C  D+I
Sbjct: 435 TYTIDPAKCTGC--TLCTKVCPVECISGTKKQPHTIDATKCIKCGACYDKCKFDSI 488


>gi|260892201|ref|YP_003238298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260864342|gb|ACX51448.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 244

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
            +   C+ C    CV+ C      +      I  P  CI C  C   CP  
Sbjct: 68  FIKRQCMHCVDPACVKACFSGALRKTPEGPVIQDPSRCIACLYCFNACPFH 118


>gi|220903821|ref|YP_002479133.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868120|gb|ACL48455.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 479

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   C+ C +  C  +CP            + I P  C+    C   CP    +  +  G
Sbjct: 118 IPRRCMHCTNPPCANLCPWGACSRDPQTGTVNISPSTCLGGAKCRTVCPWHVPQRQS--G 175

Query: 63  LELWLKINSEYA 74
           +  +L +   +A
Sbjct: 176 VGPYLHLMPRFA 187


>gi|195952686|ref|YP_002120976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932298|gb|ACG56998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 223

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C++T C   CP    Y+ E  +  ++ + CI C  C   CP  A  P     ++ 
Sbjct: 64  CMQCQNTPCYYACPTGATYKTEEGIVLVNHERCIGCEACVIACPYGARYPYESDDVDE 121


>gi|255525865|ref|ZP_05392793.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           carboxidivorans P7]
 gi|296185109|ref|ZP_06853519.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510429|gb|EET86741.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           carboxidivorans P7]
 gi|296049943|gb|EFG89367.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 284

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    CV+VC      + E     + ++C+ CG C   C  DA++   E
Sbjct: 164 KCKAC--GACVKVCKAGALDKVEGKTKFNEEKCLGCGKCINACHFDAMETKKE 214


>gi|168465031|ref|ZP_02698923.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195632373|gb|EDX50857.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 157

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|147919015|ref|YP_687258.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110622654|emb|CAJ37932.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 348

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 17/58 (29%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YV   NC  C    CV+ CP                 C  C  C   CP  AI     
Sbjct: 200 YVADGNCNGC--GTCVKTCPAGVVRLTAGRPGWD-WRCQGCMRCINICPRKAINTSIP 254


>gi|313112566|ref|ZP_07798228.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310625109|gb|EFQ08402.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 379

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C + C  D   Y+  N   I   +C  CG C   C  DAI    +   E+  
Sbjct: 202 CRGC--HRCAKECGSDAITYDANNKAVIDQTKCKGCGRCIGACNFDAIYSQCDSANEMLD 259

Query: 68  KINSEYAT 75
           +  +EYA 
Sbjct: 260 RKMAEYAA 267


>gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 624

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C  +CPV+    + +    I   +CI CG C   C   AI
Sbjct: 576 CKGCSK--CSRICPVNAISGKVKEPYVIDQSKCIKCGACVGSCAFHAI 621


>gi|300921216|ref|ZP_07137589.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300411822|gb|EFJ95132.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
          Length = 112

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMI 101


>gi|242237745|ref|YP_002985926.1| hypothetical protein Dd703_0287 [Dickeya dadantii Ech703]
 gi|242129802|gb|ACS84104.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 209

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T+ C  CK   C++ CP  V  +      +++    CI C  C   CP   
Sbjct: 121 TDTCRQCKDPQCMKACPLNVISYNPEYGCISVDTKRCIGCAACTSSCPWMM 171



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 14/57 (24%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCGVCEPECPVDAI 55
           V T+ CI C    C   CP            ++P      +CI CG C   CP  A+
Sbjct: 152 VDTKRCIGC--AACTSSCP-------WMMATVNPQIKKSGKCILCGECAAACPTGAL 199


>gi|225022805|ref|ZP_03711997.1| hypothetical protein CORMATOL_02850 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944412|gb|EEG25621.1| hypothetical protein CORMATOL_02850 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 542

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSSCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 234


>gi|212223876|ref|YP_002307112.1| putative ATPase RIL [Thermococcus onnurineus NA1]
 gi|212008833|gb|ACJ16215.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 591

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E      I    C  CG+C  +CP +AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAI 66


>gi|206576514|ref|YP_002236930.1| formate hydrogenlyase, subunit B [Klebsiella pneumoniae 342]
 gi|288933886|ref|YP_003437945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
          variicola At-22]
 gi|206565572|gb|ACI07348.1| formate hydrogenlyase, subunit B [Klebsiella pneumoniae 342]
 gi|288888615|gb|ADC56933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
          variicola At-22]
          Length = 202

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|194442517|ref|YP_002042914.1| oxidoreductase AegA [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401180|gb|ACF61402.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 157

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|153005757|ref|YP_001380082.1| electron-transferring-flavoprotein dehydrogenase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029330|gb|ABS27098.1| Electron-transferring-flavoprotein dehydrogenase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 606

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           T+   E C  C    CVE+C  +    GE+ +     ++C+ CG C   C       D 
Sbjct: 531 TFRSAETCRACGRRACVEICSAEALRPGEDGVPGFDREKCVHCGACLWSCTGRVAGSDE 589


>gi|150401639|ref|YP_001325405.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150014342|gb|ABR56793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 398

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV +NC+ C    C  VCPV+      +   +  ++CI C VC   CP +AI  + +   
Sbjct: 143 VVMDNCVGC--GVCPPVCPVEAITMENDRAVVDTEKCIYCSVCAQTCPWNAIFVNGKMPT 200

Query: 64  ELWLKINSEY 73
           +   KI+ + 
Sbjct: 201 KRHKKIDFKL 210



 Score = 36.1 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +E CI C    C E+CP D      +N     P  C  CG+C   CPVDA+  D +   
Sbjct: 211 DSEKCIGCI--ACAEICPGDMIKIDSKNIAVELPKACPACGLCVGVCPVDALYLDVDYDP 268

Query: 64  EL 65
             
Sbjct: 269 AK 270



 Score = 33.4 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA---------IHPDECIDCGVCEPECPV 52
             V TE CI C    C + CP +  +                +  ++CI C  C   CP 
Sbjct: 170 AVVDTEKCIYCS--VCAQTCPWNAIFVNGKMPTKRHKKIDFKLDSEKCIGCIACAEICPG 227

Query: 53  DAIKPDTE 60
           D IK D++
Sbjct: 228 DMIKIDSK 235


>gi|153207582|ref|ZP_01946265.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212217980|ref|YP_002304767.1| electron transport complex protein [Coxiella burnetii CbuK_Q154]
 gi|120576550|gb|EAX33174.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212012242|gb|ACJ19622.1| electron transport complex protein [Coxiella burnetii CbuK_Q154]
          Length = 213

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  + CI C  T C++ CP D      +    +  D C  C +C P CPVD I     
Sbjct: 81  AFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCIDMKII 138

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L    K   + A QW +   KK
Sbjct: 139 APLTPHEK--KQKAQQWRSRYEKK 160


>gi|83591649|ref|YP_425401.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83574563|gb|ABC21114.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 212

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C  VC +      +  + +  + C+ C +C   CP  A +   +P  
Sbjct: 82  CRHCEDAPCASVCKMAAISRVDGKVLVDAERCVGCRLCLMACPFGATEFVPQPAD 136


>gi|50120807|ref|YP_049974.1| nitrite reductase complex component [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611333|emb|CAG74780.1| nitrite reductase complex component [Pectobacterium atrosepticum
           SCRI1043]
          Length = 223

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C+++ CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCENSPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYQ 138


>gi|325969843|ref|YP_004246035.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
 gi|323709046|gb|ADY02533.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
          Length = 656

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +V  ++C       CV  CP        Y G     ++   C  CG C   CP  A++
Sbjct: 579 AFVDQDSCRG--SGLCVSECPYGAIVIKEYAGSKKAWVNEVLCKGCGACVAVCPSGAVQ 635


>gi|302391326|ref|YP_003827146.1| electron transport complex, RnfABCDGE type, B subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302203403|gb|ADL12081.1| electron transport complex, RnfABCDGE type, B subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 423

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C   CPVD     +N   I  +ECI+CGVC   CP+D I
Sbjct: 218 CIGC--GVCETKCPVDAITIEDNLAVIDYEECINCGVCAEACPMDTI 262



 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +TE C+ C    CVE CPVD    E      I P+ CI+C  C   CP DAI+       
Sbjct: 292 ITEECVGC--GVCVEECPVDAISSEDGEIHNIDPEVCIECENCVEVCPTDAIQSKEGETE 349

Query: 64  EL 65
           E 
Sbjct: 350 EA 351



 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +TE C+ C    CVE CPVD    E      I P+ CI+C  C   CP +AI+ +
Sbjct: 371 ITEECVGC--GVCVEECPVDAISGEDGEIHNIDPEVCIECENCVEVCPTEAIETE 423



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE----------------CIDCGVCE 47
           V+ + C  C   +CVE CP   F   E    +                    CI CGVCE
Sbjct: 168 VIADECTGC--GNCVEECPKGLFTLVEEGQEVFIHCSSHSGGKDVKEACKTGCIGCGVCE 225

Query: 48  PECPVDAIKPDTEPGLELWLK 68
            +CPVDAI  +    +  + +
Sbjct: 226 TKCPVDAITIEDNLAVIDYEE 246


>gi|295106607|emb|CBL04150.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 211

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y V+  C  C    C+  CP     +      + I  ++C   G C   CP +    D 
Sbjct: 60  AYHVSLACNHCAMPACMAKCPSGAIEKDGKTGLVHIDQEKCTGVGACVTSCPYNVPVLDD 119

Query: 60  EPGLEL 65
               + 
Sbjct: 120 AKKAQK 125


>gi|238761063|ref|ZP_04622040.1| Electron transport protein hydN [Yersinia kristensenii ATCC 33638]
 gi|238761316|ref|ZP_04622292.1| Electron transport protein hydN [Yersinia kristensenii ATCC 33638]
 gi|238700290|gb|EEP93031.1| Electron transport protein hydN [Yersinia kristensenii ATCC 33638]
 gi|238700543|gb|EEP93283.1| Electron transport protein hydN [Yersinia kristensenii ATCC 33638]
          Length = 190

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 67  CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGAMNVVTKQVEVMF 124


>gi|269929290|ref|YP_003321611.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269788647|gb|ACZ40789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 282

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C    C+EVCP       E   + I  D C  C  C   CP   I
Sbjct: 78  SDVCKHCVQAGCLEVCPTGAIIRTEFDTVVIQADVCNGCRACISACPFGVI 128


>gi|167755395|ref|ZP_02427522.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402]
 gi|167704334|gb|EDS18913.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402]
          Length = 299

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C    C+  CP        + + I  ++C  C  C  +CP  A+K + E  
Sbjct: 55  KCTHC--MTCINNCPTGAIKLIADKIIIDQNKCNGCLRCVNKCPQIALKNEGEYK 107


>gi|54295706|ref|YP_128121.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens]
 gi|53755538|emb|CAH17037.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens]
          Length = 204

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD      +   AI   EC  CG+C   CPVD I+ 
Sbjct: 81  EDECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEM 131


>gi|89074883|ref|ZP_01161333.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           sp. SKA34]
 gi|89049280|gb|EAR54843.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           sp. SKA34]
          Length = 551

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C    C++ CP          +AI P  C   G C   CP +AI         
Sbjct: 189 GCD--RCLDACPAGALSSDGVEVAIDPYLCQGVGSCATACPTEAITYALPDPQN 240



 Score = 41.1 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            T +C LC    CV VCP    +       L    ++C+ CG+CE  CP   I  +    
Sbjct: 415 DTTDCTLC--MSCVAVCPTRALHAIGNRPGLLFIEEDCVQCGMCEKACPEKVISLEPRFN 472

Query: 63  LELWLKINSEY 73
            +   +  +  
Sbjct: 473 WDWHARKEARL 483


>gi|325968086|ref|YP_004244278.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707289|gb|ADY00776.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta moutnovskia 768-28]
          Length = 444

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            C    CV  CP +      N + I+ + CI+CG+C  +CP  A+        E    +N
Sbjct: 114 GCND--CVNACPTNATSIVNNRVVINENACIECGLCVSKCPTGALAMVGADDNEYVALLN 171

Query: 71  S 71
            
Sbjct: 172 K 172



 Score = 34.2 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAI 55
           ++    C  C    C   CP   F  G +     L  +  +CI CG C   CP  AI
Sbjct: 308 HIDDVKCSFC--GVCFAKCPERAFDVGRDGNKTVLKFNSLKCIGCGHCARLCPEKAI 362


>gi|325677749|ref|ZP_08157397.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 8]
 gi|324110572|gb|EGC04740.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 8]
          Length = 577

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + C+ CK   C+++ CP    +     + I   +C+ CG+C   C   AIK + 
Sbjct: 528 DKCVGCK--QCLKIGCPAISIH--NKKMVIDHTQCVGCGICTEMCKFSAIKGND 577


>gi|260892089|ref|YP_003238186.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ammonifex
           degensii KC4]
 gi|260864230|gb|ACX51336.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ammonifex
           degensii KC4]
          Length = 591

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEV-CPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            E C  C    C+E+ CP     +     + I P  C+ CG+C   CP  A+
Sbjct: 535 EEVCRGC--GLCLELGCPALALKDRSRRKIVIDPLLCVGCGLCAQVCPFGAL 584


>gi|227358151|ref|ZP_03842492.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
 gi|227161487|gb|EEI46524.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
          Length = 223

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   C+ VCP    +  E+   + ++ ++CI C  C   CP  
Sbjct: 91  SCQQCEDAPCISVCPTGASWRDESNGIVRVNKEKCIGCSYCISACPYQ 138



 Score = 36.9 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAI 55
           V  E CI C +  C+  CP    Y           + C++  +       C   CP +A+
Sbjct: 120 VNKEKCIGCSY--CISACPYQVRYLNPVTHVADKCDFCLESRLQKGFPPICVSACPQNAL 177

Query: 56  KP--DTEPGLELWLK 68
               +  P ++ WLK
Sbjct: 178 LFGREDSPQIQQWLK 192


>gi|124028304|ref|YP_001013624.1| indolepyruvate oxidoreductase subunit [Hyperthermus butylicus DSM
           5456]
 gi|123978998|gb|ABM81279.1| indolepyruvate oxidoreductase subunit [Hyperthermus butylicus DSM
           5456]
          Length = 632

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV E C  C    CV+V  CP     E +  + I  ++C  CG+C   CP  AI
Sbjct: 574 VVPEKCTSC--MACVKVTGCPALYVTE-DGKVGIVEEDCTGCGLCARFCPYGAI 624


>gi|38233111|ref|NP_938878.1| nitrate reductase beta chain [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199370|emb|CAE49012.1| nitrate reductase beta chain [Corynebacterium diphtheriae]
          Length = 533

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSSCPSGAMYKRAEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 234


>gi|121605833|ref|YP_983162.1| FAD/NAD(P)-binding oxidoreductase subunit [Polaromonas
          naphthalenivorans CJ2]
 gi|120594802|gb|ABM38241.1| benzoyl-CoA oxygenase, component A [Polaromonas naphthalenivorans
          CJ2]
          Length = 427

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C  +CPV           +  ++C  C  C   CP  +I  
Sbjct: 14 IDPEICIRCN--TCEAICPVSAITHDSRNYVVDAEKCNFCMACISPCPTGSIDN 65


>gi|323703139|ref|ZP_08114793.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574]
 gi|323531916|gb|EGB21801.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574]
          Length = 321

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   CV+ CP          +    D CI CG C   CP  A+
Sbjct: 175 KCVGCRL--CVKKCPAGALTWTGKEIVRDADRCIGCGDCADSCPKSAL 220


>gi|332161092|ref|YP_004297669.1| 4Fe-4S ferrodoxin [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318604971|emb|CBY26469.1| electron transport protein HydN [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665322|gb|ADZ41966.1| 4Fe-4S ferrodoxin [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330863812|emb|CBX73907.1| electron transport protein hydN [Yersinia enterocolitica W22703]
          Length = 180

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   C  VCP        + + +  ++CI C  C   CP  A+   T+    ++
Sbjct: 57  CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGAMTVVTKQVEVMF 114


>gi|322419390|ref|YP_004198613.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
 gi|320125777|gb|ADW13337.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
          Length = 437

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          V+T  CI C    C  VCPV+     E     I  ++CI C  C   CP  A++ 
Sbjct: 16 VITGKCIAC-GARCQSVCPVNGVEMSEQGEPIIEAEKCIGCVKCVKVCPAGALEM 69


>gi|228470307|ref|ZP_04055211.1| Fe-hydrogenase large subunit family protein [Porphyromonas uenonis
           60-3]
 gi|228308050|gb|EEK16925.1| Fe-hydrogenase large subunit family protein [Porphyromonas uenonis
           60-3]
          Length = 492

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C   CP  C    +N    I  D CI CG C   CP  AI     P
Sbjct: 108 YEVSNLCRGCVSRACSSNCPKSCISFQKNGQAQIDHDVCISCGQCHKNCPYHAIVYIPVP 167

Query: 62  GLE 64
             E
Sbjct: 168 CEE 170



 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 4   VVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           +  + CI C                  C E CPV    + E+ +  I   +CI CG C  
Sbjct: 141 IDHDVCISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCLN 200

Query: 49  ECPVDAIK 56
            CP  AI 
Sbjct: 201 ACPFGAIF 208


>gi|168212266|ref|ZP_02637891.1| nitroreductase family protein [Clostridium perfringens CPE str.
          F4969]
 gi|170716002|gb|EDT28184.1| nitroreductase family protein [Clostridium perfringens CPE str.
          F4969]
          Length = 272

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I    CI+CG C   CP +A+     
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMVDGKAHIKNKSCIECGHCIAICPKEAVSDSDY 58

Query: 61 PGLE 64
             +
Sbjct: 59 DMSK 62


>gi|298291838|ref|YP_003693777.1| NADH-quinone oxidoreductase, chain I [Starkeya novella DSM 506]
 gi|296928349|gb|ADH89158.1| NADH-quinone oxidoreductase, chain I [Starkeya novella DSM 506]
          Length = 162

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +  + +  
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKAKLLANGDRWERE 150


>gi|283853654|ref|ZP_06370887.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio sp. FW1012B]
 gi|283570956|gb|EFC18983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio sp. FW1012B]
          Length = 583

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y +   C  C    C+  CPV           + P+ CI CG C   CP  A
Sbjct: 8  YTIETECQDCY--RCLRQCPVKAIQVEGGRATVVPELCIACGQCVAACPSHA 57



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF 32
            VV E CI C    CV  CP        + 
Sbjct: 36 ATVVPELCIAC--GQCVAACPSHAKQVRSDM 64


>gi|297570515|ref|YP_003691859.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926430|gb|ADH87240.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 682

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C +  CV +CP       E    I+ + C+ CG+C   CP  AIK       
Sbjct: 488 VTADRCVKCLN--CVRLCPYQAPRI-EQVALINRERCLACGICHGACPTGAIKMAGGTPE 544

Query: 64  ELWLKINSEYAT 75
           +L  ++    A 
Sbjct: 545 QLAAELPQLLAQ 556


>gi|239905922|ref|YP_002952661.1| HMC operon ORF 2 protein [Desulfovibrio magneticus RS-1]
 gi|239795786|dbj|BAH74775.1| HMC operon ORF 2 protein [Desulfovibrio magneticus RS-1]
          Length = 350

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   C V  F + E    +  PD C+ C  C   CP +    + +
Sbjct: 108 CNHCMEPACASACFVAAFKKSETGAVVYDPDVCVGCRYCMVACPFNIPAYEYD 160


>gi|224367281|ref|YP_002601444.1| Fdx3 [Desulfobacterium autotrophicum HRM2]
 gi|223689997|gb|ACN13280.1| Fdx3 [Desulfobacterium autotrophicum HRM2]
          Length = 179

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +   C  C+ + C +VCPV+   +  N + +  + C+ C  C   CP  AI
Sbjct: 53  IPVQCRHCEDSPCAQVCPVNAIIQKGNHIDVIDELCVGCKSCVLACPFGAI 103


>gi|160888297|ref|ZP_02069300.1| hypothetical protein BACUNI_00707 [Bacteroides uniformis ATCC 8492]
 gi|156862243|gb|EDO55674.1| hypothetical protein BACUNI_00707 [Bacteroides uniformis ATCC 8492]
          Length = 416

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  E+CI C    CV+ C  D  +        I   +C+ CG C   C  D      E  
Sbjct: 234 IDVESCIGCN--ICVKHCAHDAVHLNTSRKAEIDYTKCVGCGQCVALCQHDGAVMGAEDT 291

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N + A     +   K 
Sbjct: 292 SER---LNYKIAEYALAVVMGKP 311


>gi|91212084|ref|YP_542070.1| formate hydrogenlyase subunit 2 [Escherichia coli UTI89]
 gi|117624956|ref|YP_853944.1| hydrogenase 3, Fe-S subunit [Escherichia coli APEC O1]
 gi|218559714|ref|YP_002392627.1| hydrogenase 3, Fe-S subunit [Escherichia coli S88]
 gi|237706652|ref|ZP_04537133.1| hydrogenase 3 [Escherichia sp. 3_2_53FAA]
 gi|91073658|gb|ABE08539.1| formate hydrogenlyase subunit 2 [Escherichia coli UTI89]
 gi|115514080|gb|ABJ02155.1| hydrogenase 3, Fe-S subunit [Escherichia coli APEC O1]
 gi|218366483|emb|CAR04235.1| hydrogenase 3, Fe-S subunit [Escherichia coli S88]
 gi|226899692|gb|EEH85951.1| hydrogenase 3 [Escherichia sp. 3_2_53FAA]
 gi|294489596|gb|ADE88352.1| formate hydrogenlyase, subunit B [Escherichia coli IHE3034]
 gi|307625705|gb|ADN70009.1| hydrogenase 3, Fe-S subunit [Escherichia coli UM146]
 gi|315289279|gb|EFU48674.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|323951057|gb|EGB46933.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957064|gb|EGB52789.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 203

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|94310978|ref|YP_584188.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93354830|gb|ABF08919.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cupriavidus
           metallidurans CH34]
          Length = 509

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI CG C   C +   K +   GL  +  
Sbjct: 296 CVNCS--ICVQVCPTGIDIRDGLQY-----ECIGCGACIDACNLVMDKMEYPRGLIRYTS 348

Query: 69  INS 71
            N+
Sbjct: 349 ENA 351


>gi|329954944|ref|ZP_08295961.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328527048|gb|EGF54059.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 373

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  ENCI C    CV+ C  D  +        I   +C+ CG C   C  DA        
Sbjct: 191 VDIENCIGCN--ICVKHCAHDAIHLNAGRKAEIDYAKCVGCGQCVALCQHDAAVVSD--- 245

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            +   ++N + A     +   K 
Sbjct: 246 WDTSERLNYKIAEYSVAVLKDKP 268


>gi|324111349|gb|EGC05331.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
          B253]
 gi|325496235|gb|EGC94094.1| hydrogenase 3, Fe-S subunit [Escherichia fergusonii ECD227]
          Length = 203

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 624

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           Y+    C  C    C   CPV            I   +CI CG C   C   A+K D
Sbjct: 570 YIDEVLCKGCSK--CARSCPVGAISGQIKKPFKIDEKKCIKCGACIGACAFKAVKED 624


>gi|290511033|ref|ZP_06550402.1| formate hydrogenlyase subunit 2 hycB [Klebsiella sp. 1_1_55]
 gi|289776026|gb|EFD84025.1| formate hydrogenlyase subunit 2 hycB [Klebsiella sp. 1_1_55]
          Length = 202

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|242237742|ref|YP_002985923.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
 gi|242129799|gb|ACS84101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 223

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
            C  C+   C+ VCP    Y  +    + ++   CI C  C   CP  
Sbjct: 91  ACQHCEEAPCITVCPTGASYRDQATGIVRVNRPTCIGCSYCISACPYQ 138


>gi|165918320|ref|ZP_02218406.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 334]
 gi|165917970|gb|EDR36574.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 334]
          Length = 213

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  + CI C  T C++ CP D      +    +  D C  C +C P CPVD I     
Sbjct: 81  AFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCIDMKII 138

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L    K   + A QW +   KK
Sbjct: 139 APLTPHEK--KQKAQQWRSRYEKK 160


>gi|149202658|ref|ZP_01879630.1| NADH dehydrogenase subunit I [Roseovarius sp. TM1035]
 gi|149143940|gb|EDM31974.1| NADH dehydrogenase subunit I [Roseovarius sp. TM1035]
          Length = 164

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K   L +  + +  
Sbjct: 120 V--EGPNFEFATETREELF------YDKARLLANGDRWEAE 152


>gi|147676813|ref|YP_001211028.1| hypothetical protein PTH_0478 [Pelotomaculum thermopropionicum
          SI]
 gi|146272910|dbj|BAF58659.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 204

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            V  E C  CK   C  VCPV          A+  + C+ C  CE  CP  AI  
Sbjct: 8  PVVDAEKCRGCK--ICERVCPVLSIKVEAKKAAVALEHCLGCANCEQRCPETAITM 61


>gi|16082047|ref|NP_394472.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit related
           protein [Thermoplasma acidophilum DSM 1728]
 gi|10640327|emb|CAC12141.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit related
           protein [Thermoplasma acidophilum]
          Length = 605

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            YV +  C  C  T C +   CP            I    CI CG C   CP +AI    
Sbjct: 538 AYVDSNRCTGC--TICYDFFTCPSILP-LSNKKATIDDS-CIGCGACVEVCPFNAISVKG 593

Query: 60  EPGLELWLKINS 71
           E         N+
Sbjct: 594 EKPAGWEEAWNA 605


>gi|330507413|ref|YP_004383841.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328928221|gb|AEB68023.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 128

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    CV +CP   F   +  +     +CI CG C   CP  A+
Sbjct: 79  CVNC--GACVSICPTGTFRFEDWRVVADSGKCIQCGACVVGCPQRAL 123


>gi|262341336|ref|YP_003284191.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272673|gb|ACY40581.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 989

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C  VCPV     GE    +   + C+    C   CP    + + 
Sbjct: 817 CQHCDYAPCETVCPVGATVHGEQGQNMMAYNRCVGTRYCANNCPYKVRRFNW 868


>gi|291302662|ref|YP_003513940.1| nitrate reductase subunit beta [Stackebrandtia nassauensis DSM
           44728]
 gi|290571882|gb|ADD44847.1| nitrate reductase, beta subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 560

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 187 CEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDACRGWRMCVTGCPYKKVYF 237


>gi|218701216|ref|YP_002408845.1| hydrogenase 3, Fe-S subunit [Escherichia coli IAI39]
 gi|218371202|emb|CAR19033.1| hydrogenase 3, Fe-S subunit [Escherichia coli IAI39]
          Length = 203

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|218547768|ref|YP_002381559.1| hydrogenase 3, Fe-S subunit [Escherichia fergusonii ATCC 35469]
 gi|306812398|ref|ZP_07446596.1| hydrogenase 3, Fe-S subunit [Escherichia coli NC101]
 gi|331648442|ref|ZP_08349530.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli M605]
 gi|218355309|emb|CAQ87916.1| hydrogenase 3, Fe-S subunit [Escherichia fergusonii ATCC 35469]
 gi|222034418|emb|CAP77160.1| Formate hydrogenlyase subunit 2 [Escherichia coli LF82]
 gi|305854436|gb|EFM54874.1| hydrogenase 3, Fe-S subunit [Escherichia coli NC101]
 gi|312947253|gb|ADR28080.1| hydrogenase 3, Fe-S subunit [Escherichia coli O83:H1 str. NRG
          857C]
 gi|315298788|gb|EFU58042.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|320194862|gb|EFW69491.1| Formate hydrogenlyase subunit 2 [Escherichia coli WV_060327]
 gi|323188862|gb|EFZ74147.1| hydrogenase-4 component A [Escherichia coli RN587/1]
 gi|330908755|gb|EGH37269.1| formate hydrogenlyase subunit 2 [Escherichia coli AA86]
 gi|331042189|gb|EGI14331.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli M605]
          Length = 203

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|188586666|ref|YP_001918211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351353|gb|ACB85623.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 149

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C +VCPV           +  DECI CG C+  CP D I    +
Sbjct: 54  CNQCDNAFCEKVCPVSAIKRENGIPVVVQDECIGCGQCQKYCPRDVIVMMDK 105


>gi|86146002|ref|ZP_01064329.1| iron-sulfur cluster-binding protein [Vibrio sp. MED222]
 gi|85836207|gb|EAQ54338.1| iron-sulfur cluster-binding protein [Vibrio sp. MED222]
          Length = 553

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHKIEINPYLCQGVGTCATSCPT 229

Query: 53  DAIKPD--TEPGLELWLKI---NSEYATQWPNI 80
           +AI          + +++    N E+A     I
Sbjct: 230 EAITYALPNPDDTQKFIERTLANYEHAGGLDPI 262



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           C LC    CV VCP    +       L     +CI CG+CE  CP +
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPEN 464


>gi|240102122|ref|YP_002958430.1| formate hydrogenlyase II subunit B (Mhy2B) [Thermococcus
          gammatolerans EJ3]
 gi|239909675|gb|ACS32566.1| formate hydrogenlyase II subunit B (Mhy2B) [Thermococcus
          gammatolerans EJ3]
          Length = 166

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPD 58
          NC  C+   CVEVCP +  Y  E+   +  P +CI C +C   CP    + D
Sbjct: 47 NCRHCEKAPCVEVCPTNALYRDEDGAVLLAPQKCIGCLMCGIVCPFGIPELD 98


>gi|227501684|ref|ZP_03931733.1| nitrate reductase [Corynebacterium accolens ATCC 49725]
 gi|306835859|ref|ZP_07468855.1| respiratory nitrate reductase, beta subunit [Corynebacterium
           accolens ATCC 49726]
 gi|227077709|gb|EEI15672.1| nitrate reductase [Corynebacterium accolens ATCC 49725]
 gi|304568276|gb|EFM43845.1| respiratory nitrate reductase, beta subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 530

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCMNPTCVSSCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 234


>gi|139437066|ref|ZP_01771226.1| Hypothetical protein COLAER_00201 [Collinsella aerofaciens ATCC
          25986]
 gi|133776713|gb|EBA40533.1| Hypothetical protein COLAER_00201 [Collinsella aerofaciens ATCC
          25986]
          Length = 153

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
           C  C+   C + CP    +       I  + D CI C  C   CP  A+
Sbjct: 32 ACHHCEDAPCAKACPTGALFFDPKNHRIGVNEDNCIGCKSCVMACPFGAV 81


>gi|116750393|ref|YP_847080.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116750435|ref|YP_847122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116699457|gb|ABK18645.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116699499|gb|ABK18687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1006

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 9    CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  C    CV +CP                 I+P  C  CG+C   C   AI+       
Sbjct: 940  CSGC--GVCVNICPFSAPRFMESGRDAGKAEINPALCKGCGLCAASCRSGAIRLKGFDDA 997

Query: 64   ELWLKI 69
            +++  I
Sbjct: 998  QIFAMI 1003



 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------------IHPDECIDCG 44
           ++  E C  C    C +VCP     E    +                   I    C+ CG
Sbjct: 106 FIDLERCTAC--GQCRQVCPASAINEFNQGIDRREATFMRYPQAIPRGYGIDRASCLGCG 163

Query: 45  VCEPECPVDAIKPDTEPG 62
           +CE  C   A++ D +P 
Sbjct: 164 LCEKVCLAQAVRYDDQPR 181


>gi|219669176|ref|YP_002459611.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219539436|gb|ACL21175.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 194

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +C  C    C  VCPV      ++ +   +   CI C VC   CP  A+
Sbjct: 56  SCRHCSEPQCAAVCPVGAIKSTDDGVVLHNELLCIGCQVCAAVCPYAAM 104


>gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
 gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
          Length = 624

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C   CPVD    + +    I  D+CI CG C   C  +A+
Sbjct: 571 INPDLCKGCSL--CARKCPVDAISGKVKEPFVIDQDKCIKCGACYEACKFNAV 621


>gi|53802318|ref|YP_112990.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
 gi|53756079|gb|AAU90370.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
          Length = 87

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE+   I P  C +C        C   CPV+ 
Sbjct: 1  MALIITDECINCD--VCEPECPNGAISQGEDIYVIDPARCTECVGHFERPQCVEVCPVEC 58

Query: 55 IKPDTEPGLE------LWLKINS 71
          I PD +   +       ++++N+
Sbjct: 59 IHPDPDYREDHDTLYRKYVELNA 81


>gi|319794409|ref|YP_004156049.1| electron transport complex, rnfABCdge type, b subunit [Variovorax
           paradoxus EPS]
 gi|315596872|gb|ADU37938.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax
           paradoxus EPS]
          Length = 211

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M  +    CI C  T C++ CP D      +    +    C  C +C P CPVD I  + 
Sbjct: 76  MAVIDEAWCIGC--TLCLDACPTDAIVGINKRMHTVVEAHCTGCELCIPVCPVDCISLEV 133

Query: 60  EPG----LELWLKINSEYA 74
           E       + W +  +E A
Sbjct: 134 ETPGRSGWQAWSEAQAEAA 152


>gi|269958730|ref|YP_003328517.1| NADH dehydrogenase subunit I [Anaplasma centrale str. Israel]
 gi|269848559|gb|ACZ49203.1| NADH dehydrogenase subunit I [Anaplasma centrale str. Israel]
          Length = 160

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 32/105 (30%), Gaps = 14/105 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 58  EERCIACKL--CEAICPAQAITIEAEERDDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 115

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                P  E   +   E       +    +    A      K K 
Sbjct: 116 V--EGPNFEYATETREELMYNKEKLLCNGDVWEEALDFRIRKNKL 158


>gi|242240582|ref|YP_002988763.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
 gi|242132639|gb|ACS86941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 236

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    ++      + ++   C+ C  C   CP  
Sbjct: 103 SCQHCDNPPCVSVCPTGASFKDALTGIVDVNDKRCVGCRYCIAACPYH 150


>gi|161616737|ref|YP_001590702.1| hypothetical protein SPAB_04556 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366101|gb|ABX69869.1| hypothetical protein SPAB_04556 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 157

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 104


>gi|330949992|gb|EGH50252.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae Cit 7]
          Length = 291

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGASKLMHTVIIDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+ + C  C    CV  CPVDC       LA      I  G+       +A +    
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEMHPLPLA--TVTPIVGGLAPTAELQEARQRKRS 168

Query: 61  PGLELWLKINSEY 73
                +   N+  
Sbjct: 169 HARMRFEARNARL 181


>gi|309776546|ref|ZP_07671526.1| nitroreductase family protein fused to ferredoxin domain protein
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915647|gb|EFP61407.1| nitroreductase family protein fused to ferredoxin domain protein
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 257

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + ++ CI C    CV  CP       +   ++  D CI C  C   CP  A+
Sbjct: 8  IDSKACIGC--GLCVTDCPASNIVLQDKKASVIEDTCIMCSHCVAICPKHAV 57


>gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia
           bacterium enrichment culture clone BF]
          Length = 603

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y VTE  C  C    C + CP       +     +   +CI CG+C   C  DAI
Sbjct: 545 YEVTEEKCKGC--GRCNKQCPTGAIAGEKKQPFALDQGKCIRCGLCINACKFDAI 597


>gi|237798781|ref|ZP_04587242.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021634|gb|EGI01691.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 291

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  +EC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIIEECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142



 Score = 34.2 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 8/75 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  V+ E C  C    CV  CPVDC   +   +   I     I  G+        A +  
Sbjct: 113 MHTVIIEECTGCDL--CVAPCPVDCIEMHPLPSAAVIP----IVGGLAPTCDLQIARQHK 166

Query: 59  TEPGLELWLKINSEY 73
                  +   N+  
Sbjct: 167 RTHARRRFDSRNARL 181


>gi|222148283|ref|YP_002549240.1| NADH dehydrogenase subunit I [Agrobacterium vitis S4]
 gi|254767831|sp|B9JVF4|NUOI_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|221735271|gb|ACM36234.1| NADH ubiquinone oxidoreductase chain I [Agrobacterium vitis S4]
          Length = 163

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +  + +  
Sbjct: 118 IV--EGPNFEFSTESREEL------YFDKAKLLANGDRWERE 151


>gi|229815904|ref|ZP_04446228.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM
           13280]
 gi|229808599|gb|EEP44377.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM
           13280]
          Length = 421

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C +C    CVE CP           LAI P  CI CG+C   C   A+K     G E
Sbjct: 320 DRCTMC--GACVEACPTFACDLLNGGKLAIEPTYCIGCGLCAEVCSDHALKMVERDGSE 376



 Score = 33.8 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 8   NCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ CK        C++VCPV+     +  + +  D C  CG+C   CP +A
Sbjct: 58  PCLACKSEKSSCHACMDVCPVNAIEIEDGAIDV-LDSCRKCGLCVAACPTEA 108


>gi|91787512|ref|YP_548464.1| benzoyl-CoA oxygenase, component A [Polaromonas sp. JS666]
 gi|91696737|gb|ABE43566.1| benzoyl-CoA oxygenase, component A [Polaromonas sp. JS666]
          Length = 426

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C  +CPV           +  ++C  C  C   CP  +I  
Sbjct: 14 IDPEICIRCN--TCEAICPVQAITHDSRNYVVDAEKCNLCMACISPCPTGSIDN 65


>gi|159903840|ref|YP_001551184.1| ferredoxin [Prochlorococcus marinus str. MIT 9211]
 gi|159889016|gb|ABX09230.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211]
          Length = 341

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++T++C+ C    C+ VCP D      + L I    CI CG CE  CP  A
Sbjct: 98  IITDDCVKCNL--CIPVCPTDAI---PSTLEIVDSLCIGCGNCEAVCPPAA 143


>gi|294102249|ref|YP_003554107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aminobacterium colombiense DSM 12261]
 gi|293617229|gb|ADE57383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aminobacterium colombiense DSM 12261]
          Length = 220

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           V  E CI C  T C   CPV+           I  ++C+ CG C   CP DAI  
Sbjct: 153 VDEEKCIGC--TKCARNCPVNAISGELKKPHVIDKEKCVGCGKCAELCPKDAIHQ 205



 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             E CI CK   C+ VCP +     E E  + IH D C  C  C   CPV  +    E  
Sbjct: 62  DKERCIGCKL--CIRVCPANAIEFLEEEKKIQIHVDRCCFCAQCTEICPVKCLSMSKEYL 119

Query: 63  LELW 66
           +  +
Sbjct: 120 ISSY 123


>gi|292491704|ref|YP_003527143.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580299|gb|ADE14756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 557

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C    C+E CP        + + ++P  C   G C   CP  AI        E
Sbjct: 199 QGCN--RCLEACPTLAITSVGDKIQVNPYLCQGGGSCTAACPTGAITYAYPTVDE 251



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV VCP     +G     L      C+ CGVC+  CP DAI
Sbjct: 430 VDRQTCTLCL--ACVSVCPASALLDGGERPQLRFIEANCVQCGVCQAACPEDAI 481


>gi|242398619|ref|YP_002994043.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
           739]
 gi|242265012|gb|ACS89694.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
           739]
          Length = 301

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            CI C    CV+VCP +     EN    I  ++C  CGVC   CP  A+
Sbjct: 54  KCIHC--HTCVKVCPENAISFDENETQQIDREKCTGCGVCASACPTSAL 100


>gi|238896181|ref|YP_002920917.1| hydrogenase 3 iron-sulfur subunit [Klebsiella pneumoniae
          NTUH-K2044]
 gi|238548499|dbj|BAH64850.1| hydrogenase 3 iron-sulfur subunit [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 202

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|188579717|ref|YP_001923162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179343215|gb|ACB78627.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 665

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 267 TGC--TRCLDVCPTGAIASAGDSVAIDPYICAGCGSCAAVCPTGAANYALPPADALMRRL 324



 Score = 37.3 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +      LA     C+ CG+C   CP D I        
Sbjct: 507 TEDCTLCL--SCVGACPTHALTDSADRPLLAFEESLCVQCGLCAATCPEDVIDLTPRIDF 564

Query: 64  ELWLKINS 71
           E W     
Sbjct: 565 EAWAARRR 572


>gi|157373658|ref|YP_001472258.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316032|gb|ABV35130.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 229

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C  T CV VCP    Y+      +++   +C+ C  C   CP  
Sbjct: 97  SCQQCDGTPCVNVCPTGAAYKDPKTGIVSVDSWKCVGCMYCIAACPYQ 144


>gi|89070163|ref|ZP_01157492.1| NADH dehydrogenase subunit I [Oceanicola granulosus HTCC2516]
 gi|89044280|gb|EAR50426.1| NADH dehydrogenase subunit I [Oceanicola granulosus HTCC2516]
          Length = 164

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFSTETREEL------YYDKAKLLENGERWEAE 152


>gi|317488339|ref|ZP_07946899.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325830747|ref|ZP_08164131.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|316912546|gb|EFV34095.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325487154|gb|EGC89597.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 191

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           + +T +C  C    CV  CP    ++ ++       D C+ C  C   CP  A + D + 
Sbjct: 52  FHLTVSCNHCDDPACVAGCPTGAMFKSDDGTVQHIDDRCVVCRNCMITCPYGAPQFDEDE 111

Query: 62  GL 63
            +
Sbjct: 112 NM 113


>gi|307195743|gb|EFN77575.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Harpegnathos saltator]
          Length = 152

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 50  EERCIACKL--CEAICPAQAITIEAEERIDGSRRTTRYDIDMSKCIYCGFCQEACPVDAI 107

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 108 VEGP----------NFEFSTETHEEMLYNKEKLLNNGDKWESE 140


>gi|255014281|ref|ZP_05286407.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
           sp. 2_1_7]
 gi|256841502|ref|ZP_05547009.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|256737345|gb|EEU50672.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
          Length = 309

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK   E
Sbjct: 59  VKNKCIGC--GRCEAICPRGNIAIQDHFPVFNRQACVACKACERICPQNAIKFVGE 112


>gi|218702738|ref|YP_002410367.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI39]
 gi|218372724|emb|CAR20599.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI39]
          Length = 223

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDRAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|198276949|ref|ZP_03209480.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM
          17135]
 gi|198270474|gb|EDY94744.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM
          17135]
          Length = 293

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 1  MT--YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M   ++    CI CK   CV +CP   F  + +  + ++ D+CI CG C   CP ++I+ 
Sbjct: 9  MAQIHINQNTCIRCKK--CVRICPSALFTLQEDKGIEVNTDDCISCGHCVAVCPTNSIEH 66

Query: 58 DTEPGLE 64
             P  +
Sbjct: 67 ADFPPEK 73


>gi|170290729|ref|YP_001737545.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174809|gb|ACB07862.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 656

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V    C  C    CV +CP +         G  +  I P  C  CG C   CP  AI+  
Sbjct: 582 VDESKCSGC--GICVSICPFNAISMQKREDGTRYSKIDPLLCEGCGTCVAACPSAAIQQY 639



 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 20/75 (26%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCGVC 46
           V E C LC    C EVCPV    E E  +                   I P+ C  CG C
Sbjct: 250 VNERCNLC--GKCEEVCPVSVPDEYEYGIKKRKAIYLPYSGAYPERYVIDPNSCTFCGKC 307

Query: 47  EPECPVDAIKPDTEP 61
              CPV+AI  + + 
Sbjct: 308 VEVCPVNAIDLNEKE 322


>gi|262406412|ref|ZP_06082961.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|294643290|ref|ZP_06721116.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|294806484|ref|ZP_06765325.1| ferredoxin [Bacteroides xylanisolvens SD CC 1b]
 gi|262355115|gb|EEZ04206.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|292641413|gb|EFF59605.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|294446347|gb|EFG14973.1| ferredoxin [Bacteroides xylanisolvens SD CC 1b]
          Length = 317

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P +C  C  C   CP ++I
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNSI 265



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 188


>gi|222444591|ref|ZP_03607106.1| hypothetical protein METSMIALI_00203 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434156|gb|EEE41321.1| hypothetical protein METSMIALI_00203 [Methanobrevibacter smithii
           DSM 2375]
          Length = 252

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V + C+ C    C + CPV              +EC+ C  C   CP  AI+ D
Sbjct: 183 VDDKCVGC--GLCRKSCPVKAIDLQMKKPVWVKNECVMCLRCLHLCPNFAIQYD 234


>gi|170745492|ref|YP_001766949.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659093|gb|ACB28147.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 931

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL--E 64
            C+ C+H  C  VCPV    ++GE       + C+    CE  CP    + +       +
Sbjct: 755 PCMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCPYKVRRFNFFGYADGQ 814

Query: 65  LWLKINSE--YATQWPNITTK 83
            +  + +E   A + PN+T +
Sbjct: 815 PYATMGAESVKAQRNPNVTVR 835


>gi|188587487|ref|YP_001919032.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352174|gb|ACB86444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 384

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDA-IKPDTEPGL 63
            ENC LC+   CV+VCP D  Y   E+ + I+ + C+ CG C   C  +A I P +E   
Sbjct: 197 PENCTLCE--RCVDVCPHDAIYRTEEDQIEINYEICVKCGRCARVCKEEALIVPQSEERF 254

Query: 64  EL 65
           + 
Sbjct: 255 QK 256


>gi|170680331|ref|YP_001746462.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           SMS-3-5]
 gi|170518049|gb|ACB16227.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           SMS-3-5]
          Length = 223

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDRAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 623

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C    C   CP +    E      I  ++CI CG+C  +C  +AI
Sbjct: 568 YVINPELCKSCSL--CARACPQNAISGERGKPYVIDQEKCIKCGICFEKCKFNAI 620


>gi|20093761|ref|NP_613608.1| formylmethanofuran dehydrogenase subunit F, ferredoxin containing
           [Methanopyrus kandleri AV19]
 gi|19886668|gb|AAM01538.1| Probable formylmethanofuran dehydrogenase subunit F, ferredoxin
           containing [Methanopyrus kandleri AV19]
          Length = 150

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C+ C    C+  CPVD     +     + I  +EC+ CG+C   CP +A++   +
Sbjct: 71  VDEDRCVYC--GVCMRTCPVDAIQVTKPYQGHIEIDDEECVGCGLCVEICPCNALEFGRD 128

Query: 61  PGLEL 65
              E 
Sbjct: 129 GTAEK 133


>gi|301024682|ref|ZP_07188328.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300396463|gb|EFJ80001.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
          Length = 218

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VC V+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCLVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|294674193|ref|YP_003574809.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
 gi|294473472|gb|ADE82861.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
          Length = 292

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T++CI C    C  VCP   +   +   ++    C +C  C   CP  AI     P    
Sbjct: 211 TDDCIGC--GVCTSVCPHGSWKVID-GHSVANGVCENCLACVHNCPKKAISIIPTPPEPE 267

Query: 66  WLKINSEY 73
               N+ Y
Sbjct: 268 EANRNARY 275


>gi|224370949|ref|YP_002605113.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693666|gb|ACN16949.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 361

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  E C  C+   C++ C ++    G+    +    CI CG+C   CPVDAI+ + +P
Sbjct: 271 AVVDPEECTACE--TCLDRCQMNAIEIGDA-AVVDHARCIGCGLCVTTCPVDAIRLEEKP 327

Query: 62  G 62
            
Sbjct: 328 K 328


>gi|189424747|ref|YP_001951924.1| cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ]
 gi|189421006|gb|ACD95404.1| Cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ]
          Length = 292

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    C++ C  D     +    I P  C  CGVC   CPV AI  
Sbjct: 73  CTGC--GICMDSCRFDAIRREDISYRIDPVACEGCGVCYRLCPVKAIDF 119


>gi|21227956|ref|NP_633878.1| flavoprotein [Methanosarcina mazei Go1]
 gi|20906380|gb|AAM31550.1| Archaeal flavoprotein [Methanosarcina mazei Go1]
          Length = 239

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           M Y +  + C  C+     E CP +   E       I   +C  CG+C+  CP +AIK  
Sbjct: 144 MPYNIDRKQCKHCETCPPRENCPHEAISEKNGVTDQIDLLKCKGCGICKELCPYNAIKGG 203

Query: 59  TEPGLELWLKI-NSEYATQWPNITTKKES 86
               L   + + N E       IT  +  
Sbjct: 204 PVEVLVRDVDMRNVEIVKSLQGITVLESP 232


>gi|89894000|ref|YP_517487.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89333448|dbj|BAE83043.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 196

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            C  C   +C  VCP   F + ++ +  I    C  C +C   CP DA + 
Sbjct: 63  ACNHCDSPECFRVCPQHAFNKRKDGIVEIDSSLCNGCRLCVKACPYDAPQY 113


>gi|150018422|ref|YP_001310676.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium beijerinckii NCIMB 8052]
 gi|149904887|gb|ABR35720.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Clostridium beijerinckii NCIMB 8052]
          Length = 280

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +    C  C    C +VCP       EN   +    CI CG C   C   A+     P  
Sbjct: 11 IDQSKCTKC--GSCSKVCPTGFIGMDENGPKVVGQFCIACGHCVAVCHCAALDNVKTPLA 68

Query: 64 EL 65
            
Sbjct: 69 NQ 70


>gi|153808350|ref|ZP_01961018.1| hypothetical protein BACCAC_02644 [Bacteroides caccae ATCC 43185]
 gi|160885009|ref|ZP_02066012.1| hypothetical protein BACOVA_03006 [Bacteroides ovatus ATCC 8483]
 gi|237712761|ref|ZP_04543242.1| ferredoxin [Bacteroides sp. D1]
 gi|237718010|ref|ZP_04548491.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|253572210|ref|ZP_04849614.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|255693219|ref|ZP_05416894.1| conserved domain protein [Bacteroides finegoldii DSM 17565]
 gi|260174361|ref|ZP_05760773.1| ferredoxin [Bacteroides sp. D2]
 gi|262409750|ref|ZP_06086288.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|294645353|ref|ZP_06723064.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|298387976|ref|ZP_06997524.1| hypothetical protein HMPREF9007_04780 [Bacteroides sp. 1_1_14]
 gi|298483140|ref|ZP_07001320.1| hypothetical protein HMPREF0106_03607 [Bacteroides sp. D22]
 gi|299147705|ref|ZP_07040768.1| conserved domain protein [Bacteroides sp. 3_1_23]
 gi|315922629|ref|ZP_07918869.1| ferredoxin [Bacteroides sp. D2]
 gi|149129253|gb|EDM20469.1| hypothetical protein BACCAC_02644 [Bacteroides caccae ATCC 43185]
 gi|156109359|gb|EDO11104.1| hypothetical protein BACOVA_03006 [Bacteroides ovatus ATCC 8483]
 gi|229447173|gb|EEO52964.1| ferredoxin [Bacteroides sp. D1]
 gi|229452651|gb|EEO58442.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|251838390|gb|EES66477.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|260621028|gb|EEX43899.1| conserved domain protein [Bacteroides finegoldii DSM 17565]
 gi|262352403|gb|EEZ01505.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|292639291|gb|EFF57598.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|295084619|emb|CBK66142.1| 4Fe-4S binding domain. [Bacteroides xylanisolvens XB1A]
 gi|298259242|gb|EFI02118.1| hypothetical protein HMPREF9007_04780 [Bacteroides sp. 1_1_14]
 gi|298270657|gb|EFI12238.1| hypothetical protein HMPREF0106_03607 [Bacteroides sp. D22]
 gi|298513888|gb|EFI37774.1| conserved domain protein [Bacteroides sp. 3_1_23]
 gi|313696504|gb|EFS33339.1| ferredoxin [Bacteroides sp. D2]
          Length = 56

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV+   EG+   +I+PD C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIAC--GTCIDECPVEAISEGD-IYSINPDVCTDCGTCADVCPSEAIHP 54


>gi|126180364|ref|YP_001048329.1| cobyrinic acid a,c-diamide synthase [Methanoculleus marisnigri JR1]
 gi|125863158|gb|ABN58347.1| Cobyrinic acid a,c-diamide synthase [Methanoculleus marisnigri JR1]
          Length = 289

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C + C        ++   +    C  C VC   CP  AI  +
Sbjct: 64  IDPERCRDC--GICADHCRFGAIVRRDDAWEVDTMHCEGCAVCTYVCPTGAISME 116


>gi|23015034|ref|ZP_00054824.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 339

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  +C+ C    CV  CPV    +      +  + D CI C  C   CP    +   +  
Sbjct: 115 IKRSCLHCADPSCVSACPVSAMQKRPTDGVVTYNKDACIGCRYCVAACPFGVPQFQYDTP 174

Query: 63  LEL 65
              
Sbjct: 175 TPQ 177



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 14/95 (14%)

Query: 4   VVT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---------CEPECP 51
           VVT   + CI C++  CV  CP        +       +C  C           C   CP
Sbjct: 144 VVTYNKDACIGCRY--CVAACPFGVPQFQYDTPTPQIAKCQLCKHRMEQGKYAACAESCP 201

Query: 52  VDAIKPDTEPGLELWLKINSEYATQWPNITTKKES 86
             A    +   L   ++         PN+  ++  
Sbjct: 202 TGATIFGSYKALSEEIERRRAMKPGEPNLFPRRTP 236


>gi|325286761|ref|YP_004262551.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Cellulophaga lytica DSM 7489]
 gi|324322215|gb|ADY29680.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga lytica DSM 7489]
          Length = 1041

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 868 CQHCNHAPCETVCPVAATSHSRQGQNHMAYNRCVGTRYCANNCPYKVRRFNW 919


>gi|269140136|ref|YP_003296837.1| formate-dependent nitrite reductase; Fe-S center [Edwardsiella
           tarda EIB202]
 gi|267985797|gb|ACY85626.1| formate-dependent nitrite reductase; Fe-S center [Edwardsiella
           tarda EIB202]
 gi|304559970|gb|ADM42634.1| NrfC [Edwardsiella tarda FL6-60]
          Length = 223

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV  CP    +       + ++P+ C+ C  C   CP  
Sbjct: 91  SCQHCDDAPCVNACPTGASFRDAASGIVDVNPELCVGCQYCIAACPYR 138


>gi|225418700|ref|ZP_03761889.1| hypothetical protein CLOSTASPAR_05924 [Clostridium asparagiforme
           DSM 15981]
 gi|225041755|gb|EEG52001.1| hypothetical protein CLOSTASPAR_05924 [Clostridium asparagiforme
           DSM 15981]
          Length = 275

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + V   CI C    C  VCP        N        CI C  C   CP  AI 
Sbjct: 203 HTVETACIGC--GLCARVCPASNIIISNNRAR-WGSNCIHCLACFHWCPKQAIH 253


>gi|153852617|ref|ZP_01994054.1| hypothetical protein DORLON_00027 [Dorea longicatena DSM 13814]
 gi|149754259|gb|EDM64190.1| hypothetical protein DORLON_00027 [Dorea longicatena DSM 13814]
          Length = 607

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V ++ CI CK       CP      G   + I    C  CG+C   CPV AI
Sbjct: 550 HVSSDKCIGCKKCIKELGCPAIVLNNGN--VCIDSSMCTGCGLCSQVCPVTAI 600


>gi|118590029|ref|ZP_01547433.1| NADH dehydrogenase subunit I [Stappia aggregata IAM 12614]
 gi|118437526|gb|EAV44163.1| NADH dehydrogenase subunit I [Stappia aggregata IAM 12614]
          Length = 162

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKEKLLANGDRWERE 150


>gi|89897569|ref|YP_521056.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219670695|ref|YP_002461130.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89337017|dbj|BAE86612.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219540955|gb|ACL22694.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 192

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           Y ++  C  C    CV+ CP    +   +       + CI C  C   CP      
Sbjct: 52  YYLSMGCNHCADAKCVKGCPTGAMHVAADGTVQHDQELCIGCKYCVWNCPYSVPHY 107


>gi|330446984|ref|ZP_08310635.1| sulfite reductase, subunit C [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491175|dbj|GAA05132.1| sulfite reductase, subunit C [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 333

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            E CI C    CV  C    V+C             +CI CG C   CP  A     +P 
Sbjct: 177 PERCIGC--GACVRACQHHAVNCLSLKNGKAVKEESKCIGCGECVLACPTLA--WQRDPK 232

Query: 63  LELWLKINSEYATQWPNI 80
               +K+    + + P +
Sbjct: 233 QLYMVKLGGRTSKKTPRV 250



 Score = 33.8 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C + DC +    D    G   +   P+ CI CG C   C   A+  
Sbjct: 152 GCPN-DCAKANMADFGILGIAKINFTPERCIGCGACVRACQHHAVNC 197


>gi|261367693|ref|ZP_05980576.1| RnfB/polyferredoxin [Subdoligranulum variabile DSM 15176]
 gi|282570487|gb|EFB76022.1| RnfB/polyferredoxin [Subdoligranulum variabile DSM 15176]
          Length = 278

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    CV  CP    +  +N   I   +C  CG C  +CP  AI+ 
Sbjct: 214 CIAC--GLCVRNCPQQAIFLKDNVAVIDYTKCNGCGTCVSKCPKKAIQW 260



 Score = 35.7 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C    DC   C  D  +       +   +C  C  C   CP   I+ 
Sbjct: 139 GCLGLGDCTRACKFDAIHVVNGVAVVDRSKCTGCTACTAVCPRKVIQM 186



 Score = 34.2 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 18/85 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLAIHPDE---CIDCGV 45
             V    C  C  T C  VCP                    +    ++      CI CG+
Sbjct: 162 AVVDRSKCTGC--TACTAVCPRKVIQMKPIAPQPAVKCSNKDKGAVVNKTCKVGCIACGL 219

Query: 46  CEPECPVDAIKPDTEPGLELWLKIN 70
           C   CP  AI       +  + K N
Sbjct: 220 CVRNCPQQAIFLKDNVAVIDYTKCN 244


>gi|167751205|ref|ZP_02423332.1| hypothetical protein EUBSIR_02191 [Eubacterium siraeum DSM 15702]
 gi|167655712|gb|EDR99841.1| hypothetical protein EUBSIR_02191 [Eubacterium siraeum DSM 15702]
          Length = 577

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++  + C  CK   C+ + CP      G+  + I    C+ CG+CE  C  DAI
Sbjct: 526 HIDADKCKNCK--SCMRIGCP--ALVSGDKCITIDNTLCVGCGLCEQLCKFDAI 575


>gi|110803341|ref|YP_698302.1| nitroreductase family protein [Clostridium perfringens SM101]
 gi|110683842|gb|ABG87212.1| nitroreductase family protein [Clostridium perfringens SM101]
          Length = 272

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + CI+CG C   CP +A+     
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMVDGKAHIKNESCIECGHCIAICPKEAVSDSDY 58

Query: 61 PGLE 64
             +
Sbjct: 59 DMSK 62


>gi|78043073|ref|YP_361194.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995188|gb|ABB14087.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 372

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E C+ C    C   CP            +  ++CI C  C+  CP +A+
Sbjct: 308 VMNERCVGC--GRCARHCPPKAVKIENRRAIVDYNKCIRCYCCQELCPANAV 357


>gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
 gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
          Length = 640

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           Y+  + C  C    C   CP D    G+     I   +CI CG C   CP
Sbjct: 563 YIDPDKCKAC--MICARNCPTDAIKGGKGLIHTIEQGKCIKCGACVDTCP 610


>gi|114567439|ref|YP_754593.1| ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
          Goettingen]
 gi|114338374|gb|ABI69222.1| Ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
          Goettingen]
          Length = 387

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          V+++C  C H  C  +CP      E      I P +CI+CG C   CP +AI
Sbjct: 12 VSDDCKACDH--CTFICPTGAISGELGQKHHISPKKCINCGQCLINCPFNAI 61


>gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 633

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C  +CP       +     I    CI CGVC   C   A+
Sbjct: 580 IDVDKCTGC--GSCARLCPQSAVSGEKKKPHQIDQSLCIRCGVCYDSCKFGAV 630


>gi|291556729|emb|CBL33846.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 573

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++  + C  CK   C+ + CP      G+  + I    C+ CG+CE  C  DAI
Sbjct: 522 HIDADKCKNCK--SCMRIGCP--ALVSGDKCITIDNTLCVGCGLCEQLCKFDAI 571


>gi|291531719|emb|CBK97304.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium siraeum 70/3]
          Length = 573

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++  + C  CK   C+ + CP      G+  + I    C+ CG+CE  C  DAI
Sbjct: 522 HIDADKCKNCK--SCMRIGCP--ALVSGDKCITIDNTLCVGCGLCEQLCKFDAI 571


>gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 640

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           Y+  + C  C    C   CP D    G+     I   +CI CG C   CP
Sbjct: 563 YIDPDKCKAC--MICARNCPTDAIKGGKGLIHTIEQGKCIKCGACVDTCP 610


>gi|258404302|ref|YP_003197044.1| hypothetical protein Dret_0164 [Desulfohalobium retbaense DSM 5692]
 gi|257796529|gb|ACV67466.1| conserved hypothetical protein [Desulfohalobium retbaense DSM 5692]
          Length = 321

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           V   C+ C++  C  +CP     + +N +  I    C+    C   CP  
Sbjct: 117 VPRRCLHCQNPPCANLCPWGAARKQDNGIVRIDEAICLGGSKCNKVCPWH 166


>gi|269926700|ref|YP_003323323.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790360|gb|ACZ42501.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 984

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           C  C+   C  VCPV         +  +  + C+    C   C   
Sbjct: 815 CQHCERAPCEYVCPVAATTHSPEGINEMTYNRCVGTRYCANNCAWK 860


>gi|154496500|ref|ZP_02035196.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC
           29799]
 gi|150274133|gb|EDN01224.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC
           29799]
          Length = 214

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ E CI C    C  VCPV+C         I    C+ CG C   CPV A+
Sbjct: 155 IIPEKCIGC--QGCRSVCPVNCISGTIPRN-IDTAHCLHCGNCLSICPVGAV 203


>gi|20089897|ref|NP_615972.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Methanosarcina acetivorans C2A]
 gi|19914851|gb|AAM04452.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Methanosarcina acetivorans C2A]
          Length = 605

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 2   TYVV-TENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YVV  E C  CK   CV+  CP   F E      I    C  CGVC   C  DAI
Sbjct: 548 PYVVDPEKCEGCK--QCVKFGCPAIEFDEENKRAVI-TALCSGCGVCAQICKFDAI 600


>gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 640

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           Y+  + C  C    C   CP D    G+     I   +CI CG C   CP
Sbjct: 563 YIDPDKCKAC--MICARNCPTDAIKGGKGLIHTIEQGKCIKCGACVDTCP 610


>gi|330957741|gb|EGH58001.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 291

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I     
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIIDECTGCDLCIAPCPVDCIDMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|302343175|ref|YP_003807704.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfarculus baarsii DSM 2075]
 gi|301639788|gb|ADK85110.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 695

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 10  ILCK-HTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           I C     C + CP      G +N   I P  C  CG CE  CP + I 
Sbjct: 136 IGCLGLGTCAKACPFGAITIGADNLPHIDPSLCTGCGTCERVCPKNIIH 184


>gi|226939464|ref|YP_002794537.1| NADH dehydrogenase subunit I [Laribacter hongkongensis HLHK9]
 gi|226714390|gb|ACO73528.1| NuoI [Laribacter hongkongensis HLHK9]
          Length = 160

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 58  EERCIACKL--CEAVCPAMAITIDSEQRADGTRRTTRYEIDYQKCIFCGFCEEACPTDAI 115


>gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
 gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
          Length = 623

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E CI C    C + CP      + ++   I+ D CI CG C+  C  DA+  +
Sbjct: 568 HINPEFCIGC--GKCAKNCPAGAISGKIKSPYHINNDVCIKCGSCKDNCNFDAVYVE 622


>gi|75410723|sp|Q9AIX6|BOXA_AZOEV RecName: Full=Benzoyl-CoA oxygenase component A; AltName:
          Full=Benzoyl-CoA 2,3-dioxygenase subunit A; AltName:
          Full=Benzoyl-CoA dioxygenase reductase component
 gi|12655805|gb|AAK00600.1|AF220510_2 BoxA [Azoarcus evansii]
 gi|23664440|gb|AAN39377.1| benzoyl-CoA oxygenase component A [Azoarcus evansii]
          Length = 414

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  E CI C    C E+CPVD          +  + C  C  C   CP  AI
Sbjct: 16 IDPEICIRCN--TCEEICPVDAITHDSRNYVVKFETCNGCLACISPCPTGAI 65



 Score = 34.2 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKES 86
              I P+ CI C  CE  CPVDAI  D+   +  +   N   A   P  T   +S
Sbjct: 12 RQHLIDPEICIRCNTCEEICPVDAITHDSRNYVVKFETCNGCLACISPCPTGAIDS 67


>gi|15644044|ref|NP_229093.1| ferredoxin [Thermotoga maritima MSB8]
 gi|170289313|ref|YP_001739551.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermotoga sp. RQ2]
 gi|4981847|gb|AAD36363.1|AE001784_5 ferredoxin [Thermotoga maritima MSB8]
 gi|170176816|gb|ACB09868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
          sp. RQ2]
          Length = 95

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 5  VTENCILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          V   C+ C   +CV+VCPV            I   +CI CG C   CPV AI+P+ E
Sbjct: 4  VNSKCVGC--GNCVKVCPVEGAIRIENGKAVIDNYKCIRCGKCFDACPVGAIRPNYE 58


>gi|15896720|ref|NP_350069.1| nitroreductase family protein [Clostridium acetobutylicum ATCC
          824]
 gi|15026573|gb|AAK81409.1|AE007845_10 Nitroreductase family protein fused to ferredoxin domain
          [Clostridium acetobutylicum ATCC 824]
 gi|325510888|gb|ADZ22524.1| Nitroreductase family protein fused to ferredoxin domain
          [Clostridium acetobutylicum EA 2018]
          Length = 269

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 14/88 (15%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          + C+ C    CV  CP       EN    + P +CI CG C   CP +AI     P    
Sbjct: 9  DKCVKC--GICVNECPEQIIKMKENSPEDVCPQKCIACGHCVAVCPKEAIDNVKTPL--- 63

Query: 66 WLKINSEYATQWPNITTKKESLPSAAKM 93
             IN + + ++  +T        A   
Sbjct: 64 ---INQKSSKKFSKLT-----PAEAENF 83


>gi|219668369|ref|YP_002458804.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538629|gb|ACL20368.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 192

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           Y  +  C  C    CV+ CP    +  ++       ++CI C  C   CP 
Sbjct: 52  YHYSATCNHCAEAKCVKGCPTGALHFADDGTVQHDKNKCIGCQYCTWNCPY 102


>gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 625

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C    C ++CP      +      I    C+ C  C   CP DAI+ +
Sbjct: 572 IDPDKCRGC--GKCRKICPASAIEGKTREPHKIDITRCLRCLACIDACPFDAIREE 625



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV + C         +VC      +G   LAI PD+C  CG C   CP  AI+  T 
Sbjct: 551 MAHVVEKRCPS-------KVC------KGLGQLAIDPDKCRGCGKCRKICPASAIEGKTR 597

Query: 61  PGLELWL 67
              ++ +
Sbjct: 598 EPHKIDI 604


>gi|303257710|ref|ZP_07343722.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302859680|gb|EFL82759.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 192

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           C  C++  CV+ CP    Y  EN L    PD+C+ C  C   CP DA    
Sbjct: 67  CQQCENAPCVKTCPFGANYYDENGLVRNDPDKCVGCNYCIASCPYDARWSH 117


>gi|291287698|ref|YP_003504514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884858|gb|ADD68558.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 187

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + +   C  C    CV VCP    ++ E+ +  +    C+ C  C   CP DA   + +
Sbjct: 54  HFLPNQCNHCDDAPCVTVCPTKASHKREDGVVYVTRSRCVGCKYCIVSCPYDARFFNHD 112


>gi|213021596|ref|ZP_03336043.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 180

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 11 CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 63


>gi|154148497|ref|YP_001407281.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           hominis ATCC BAA-381]
 gi|153804506|gb|ABS51513.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter hominis ATCC
           BAA-381]
          Length = 188

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C++C+++ CVEVCP    ++ EN +  I+ + C+ C  C   CP DA   D
Sbjct: 57  SCVMCENSPCVEVCPTGASFKTENGITLINHNLCVSCKYCILACPYDARFVD 108


>gi|116753878|ref|YP_842996.1| cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT]
 gi|116665329|gb|ABK14356.1| Cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C+ C    C EVC  +          + P+ C  CG C   CP  AI
Sbjct: 62  IDEKLCVHC--GRCAEVCAFNAIAVIPTRAVVFPELCHGCGACMISCPEKAI 111


>gi|108804047|ref|YP_643984.1| respiratory nitrate reductase subunit beta [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765290|gb|ABG04172.1| respiratory nitrate reductase beta subunit [Rubrobacter
           xylanophilus DSM 9941]
          Length = 538

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+ +    + +  ++C     C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEQCRGWRYCVSGCPYKKVYF 232


>gi|330997493|ref|ZP_08321342.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
 gi|329570524|gb|EGG52248.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
          Length = 54

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++C+ C    C++ CPV    EGE    I+ D C +CG C   CP  AI
Sbjct: 1  MAYVIGDDCVAC--GTCIDECPVGAISEGE-KYVINADACTECGTCADVCPSGAI 52


>gi|300087813|ref|YP_003758335.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527546|gb|ADJ26014.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1119

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAI 55
            VV ENC  C +  CV+ CP D           E +  +   P  C  CGVC   CP   I
Sbjct: 1042 VVDENCDGCAY--CVDPCPYDAISLIEYRKNGETKKTVEADPMRCHGCGVCMATCPKQGI 1099


>gi|305681900|ref|ZP_07404704.1| nitrate reductase, beta subunit [Corynebacterium matruchotii ATCC
           14266]
 gi|305658373|gb|EFM47876.1| nitrate reductase, beta subunit [Corynebacterium matruchotii ATCC
           14266]
          Length = 542

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSSCPSGAMYKRTEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 234


>gi|242398680|ref|YP_002994104.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus sibiricus MM 739]
 gi|242265073|gb|ACS89755.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus sibiricus MM 739]
          Length = 295

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + +E CI C    C E CP DC    +    ++   C  CGVC   CPV+ +    E
Sbjct: 66  INSETCIKC--GICAERCPYDCIKILDENYVVNELTCEGCGVCRLVCPVNGVITLEE 120


>gi|227498571|ref|ZP_03928715.1| nitroreductase [Acidaminococcus sp. D21]
 gi|226904027|gb|EEH89945.1| nitroreductase [Acidaminococcus sp. D21]
          Length = 270

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 1  MTYVVT---ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
          M  ++T   E C  C    C +VCP             I+   C+ CG C   CP  A+ 
Sbjct: 1  MAGIITIDKEKCTRC--GTCAKVCPSCILEMDTEGPVCINDLSCMSCGHCVAVCPTGALD 58

Query: 57 PDTEPGLE 64
              P  E
Sbjct: 59 NSRCPKAE 66


>gi|239617471|ref|YP_002940793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506302|gb|ACR79789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
          Length = 136

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++ DC   CP       +   + +  ++CI CG C   C   A++ DTE
Sbjct: 55  CYGCENPDCATACPTKALTPRKGGGVVLDSEKCIHCGKCIEACVPGALQWDTE 107


>gi|218780619|ref|YP_002431937.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762003|gb|ACL04469.1| Putative uncharacterized protein (contains partial HdrA and MvhD
           domains) [Desulfatibacillum alkenivorans AK-01]
          Length = 532

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +V  + C +C    C   CP    Y  ++   I    C  CG+C  ECP DAI+
Sbjct: 332 AFVDVDKCTVCL--TCYRCCPHGAIYW-DSRAIIAESACQGCGICASECPNDAIQ 383


>gi|148361193|ref|YP_001252400.1| electron transport complex protein [Legionella pneumophila str.
           Corby]
 gi|296108529|ref|YP_003620230.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282966|gb|ABQ57054.1| Electron transport complex protein [Legionella pneumophila str.
           Corby]
 gi|295650431|gb|ADG26278.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 204

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD      +   AI   EC  CG+C   CPVD I+ 
Sbjct: 81  EDECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEM 131


>gi|197117961|ref|YP_002138388.1| formate dehydrogenase iron-sulfur subunit [Geobacter bemidjiensis
           Bem]
 gi|197087321|gb|ACH38592.1| formate dehydrogenase, iron-sulfur subunit [Geobacter bemidjiensis
           Bem]
          Length = 262

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + C+ C    C++VCP     Y  +   +  + ++CI C  C   CP +  + D+   +
Sbjct: 78  NQRCMHCGDAGCIKVCPSPGALYRTKEGSVVFNKEKCIACKYCVSACPFNIPRYDSNDKV 137

Query: 64  EL 65
             
Sbjct: 138 AK 139


>gi|7321247|emb|CAB82182.1| nitrate reductase beta-subunit [Pseudomonas stutzeri]
          Length = 328

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPACAASCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYLNWK 221


>gi|16126185|ref|NP_420749.1| NADH dehydrogenase subunit I [Caulobacter crescentus CB15]
 gi|81782641|sp|Q9A6Y4|NUOI_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|13423401|gb|AAK23917.1| NADH dehydrogenase I, I subunit [Caulobacter crescentus CB15]
          Length = 163

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQK 99
                         N+E+AT+        K+  L +  + + +  K
Sbjct: 119 VEGP----------NTEFATETREELYYDKERLLDNGDRWERLIAK 154


>gi|319405690|emb|CBI79313.1| NADH dehydrogenase I chain I [Bartonella sp. AR 15-3]
          Length = 163

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEASPRRNDGTRRAIRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYNKEKLLNNGDRWERE 151


>gi|302389032|ref|YP_003824853.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199660|gb|ADL07230.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 315

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           TE C  C    C   CP  C  +GE+    +   C  CG+C   CP  AI    E   E 
Sbjct: 258 TEACTQCW--TCWIYCPDTCIKKGEDGPLFNLKYCKGCGLCAAVCPTGAITEVPELDFED 315


>gi|239946812|ref|ZP_04698565.1| NADH-quinone oxidoreductase subunit I [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921088|gb|EER21112.1| NADH-quinone oxidoreductase subunit I [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 159

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
               E     +  +     T    I  K+  L +  K +
Sbjct: 115 ---VEGPNFEFTSL-----THTALIYDKERLLQNGDKWE 145


>gi|218691011|ref|YP_002399223.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli ED1a]
 gi|218428575|emb|CAR09502.2| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli ED1a]
          Length = 162

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSTCPFGMITIQSLPGD 109


>gi|121533366|ref|ZP_01665194.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307925|gb|EAX48839.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 178

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   CV  CP    Y+ E  +  +  ++C+ C  C   CP +      + 
Sbjct: 58  CQHCQDAPCVPACPTTASYKHETGVTLVDKNKCMGCRRCIAACPYNVRTYIADE 111


>gi|221067715|ref|ZP_03543820.1| cytochrome c oxidase accessory protein CcoG [Comamonas testosteroni
           KF-1]
 gi|220712738|gb|EED68106.1| cytochrome c oxidase accessory protein CcoG [Comamonas testosteroni
           KF-1]
          Length = 480

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   CV+VCPV               ECI CG+C   C     K +   GL     
Sbjct: 274 CIDCKL--CVQVCPVGIDIRKGLQY-----ECIGCGLCIDACNSVMDKMEYPRGLIRLTT 326

Query: 69  INSEYATQWP 78
            N+  A  W 
Sbjct: 327 QNA-VAKLWK 335


>gi|108798233|ref|YP_638430.1| respiratory nitrate reductase beta subunit [Mycobacterium sp. MCS]
 gi|119867329|ref|YP_937281.1| respiratory nitrate reductase beta subunit [Mycobacterium sp. KMS]
 gi|108768652|gb|ABG07374.1| respiratory nitrate reductase beta subunit [Mycobacterium sp. MCS]
 gi|119693418|gb|ABL90491.1| respiratory nitrate reductase beta subunit [Mycobacterium sp. KMS]
          Length = 551

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCMASCPSGAIYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKMYF 232


>gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
 gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
          Length = 640

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           Y+  + C  C    C   CP D    G+     I  D+CI CG C   CP
Sbjct: 563 YIDPDKCKAC--MICARNCPTDAIKGGKGLIHTIEQDKCIKCGACLDTCP 610


>gi|88601919|ref|YP_502097.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88187381|gb|ABD40378.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 425

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-------------CFYEGENFLAI-----HPDECIDCG 44
           YV   +C  C   DCVEVCPV+               Y+    +         + CIDCG
Sbjct: 98  YVRAADCTGC--GDCVEVCPVEVYNRFDAGIGVRKAIYKAHPQVVPNVVIRDKEHCIDCG 155

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C   A+  D+E   E 
Sbjct: 156 LCYDICGKQAVLRDSEDAEEE 176


>gi|34556995|ref|NP_906810.1| IRON-sulfur protein precursor [Wolinella succinogenes DSM 1740]
 gi|34482710|emb|CAE09710.1| IRON-SULFUR PROTEIN PRECURSOR [Wolinella succinogenes]
          Length = 329

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            V   C+ C    C ++CP     + E     I PD C+    C   CP 
Sbjct: 118 FVPRRCMHCDDAPCQKLCPFGVIGKSEQGAVSIDPDFCMGGAKCRDACPW 167


>gi|7649452|emb|CAB89112.1| nitrate reductase subunit 2 [Haloarcula marismortui]
 gi|18447895|emb|CAD22070.1| nitrate reductase subunit 2 [Haloarcula marismortui]
          Length = 358

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  CVE CP    Y+   +  + +  D C     C   CP   +  +T
Sbjct: 154 CNHCTHPSCVEACPRSALYKRQEDGIVLVDQDRCRGYRYCVEGCPYKKVYYNT 206


>gi|332798091|ref|YP_004459590.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Tepidanaerobacter sp. Re1]
 gi|332695826|gb|AEE90283.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Tepidanaerobacter sp. Re1]
          Length = 586

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + T+ C  CK   C+++ CP   F +G   + I    C  C +C   C  DAI
Sbjct: 533 IDTDKCTQCKM--CLKIGCPAIAFKDG--IMVIDQASCNGCTLCMQVCRFDAI 581


>gi|323478539|gb|ADX83777.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Sulfolobus
           islandicus HVE10/4]
          Length = 472

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ CK  DC   CPV       +F+        +CI  G C   CP + I      
Sbjct: 399 DPKKCLTCKTVDCAYACPVGLTDMRASFIKKGEFKSFKCIGVGDCVEVCPYNNITFYDAR 458

Query: 62  GLEL 65
               
Sbjct: 459 SWIK 462


>gi|323475885|gb|ADX86491.1| polyferredoxin, NapH [Sulfolobus islandicus REY15A]
          Length = 472

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ CK  DC   CPV       +F+        +CI  G C   CP + I      
Sbjct: 399 DPKKCLTCKTVDCAYACPVGLTDMRASFIKKGEFKSFKCIGVGDCVEVCPYNNITFYDAR 458

Query: 62  GLEL 65
               
Sbjct: 459 SWIK 462


>gi|310658139|ref|YP_003935860.1| formate dehydrogenase-h, [4fe-4S] ferredoxin subunit [Clostridium
           sticklandii DSM 519]
 gi|308824917|emb|CBH20955.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Clostridium
           sticklandii]
          Length = 179

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCPV      ++ + I  ++CI C  C   CP+ A+    +     
Sbjct: 59  CRQCEDAPCANVCPVSGIIHQDDKIIIKTEQCIGCKTCILACPIGAMNMVHDEATMK 115


>gi|284999022|ref|YP_003420790.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|284446918|gb|ADB88420.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
          Length = 478

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ CK  DC   CPV       +F+        +CI  G C   CP + I      
Sbjct: 405 DPKKCLTCKTVDCAYACPVGLTDMRASFIKKGEFKSFKCIGVGDCVEVCPYNNITFYDAR 464

Query: 62  GLEL 65
               
Sbjct: 465 SWIK 468


>gi|238620928|ref|YP_002915754.1| hypothetical protein M164_2491 [Sulfolobus islandicus M.16.4]
 gi|238381998|gb|ACR43086.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4]
          Length = 472

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ CK  DC   CPV       +F+        +CI  G C   CP + I      
Sbjct: 399 DPKKCLTCKTVDCAYACPVGLTDMRASFIKKGEFKSFKCIGVGDCVEVCPYNNITFYDAR 458

Query: 62  GLEL 65
               
Sbjct: 459 SWIK 462


>gi|229580408|ref|YP_002838808.1| hypothetical protein YG5714_2658 [Sulfolobus islandicus Y.G.57.14]
 gi|229580958|ref|YP_002839357.1| hypothetical protein YN1551_0254 [Sulfolobus islandicus Y.N.15.51]
 gi|228011124|gb|ACP46886.1| conserved hypothetical protein [Sulfolobus islandicus Y.G.57.14]
 gi|228011674|gb|ACP47435.1| conserved hypothetical protein [Sulfolobus islandicus Y.N.15.51]
          Length = 472

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ CK  DC   CPV       +F+        +CI  G C   CP + I      
Sbjct: 399 DPKKCLTCKTVDCAYACPVGLTDMRASFIKKGEFKSFKCIGVGDCVEVCPYNNITFYDAR 458

Query: 62  GLEL 65
               
Sbjct: 459 SWIK 462


>gi|126433890|ref|YP_001069581.1| nitrate reductase, beta subunit [Mycobacterium sp. JLS]
 gi|126233690|gb|ABN97090.1| respiratory nitrate reductase beta subunit [Mycobacterium sp. JLS]
          Length = 551

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCMASCPSGAIYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKMYF 232


>gi|20089551|ref|NP_615626.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19914464|gb|AAM04106.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 6
           (predicted alternative beta subunit) [Methanosarcina
           acetivorans C2A]
          Length = 264

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP       E    I  ++C  CG C   CP  AI
Sbjct: 217 CIGCKK--CEKECPAGAIRVTEFLAEIDQEKCTACGACVAICPQKAI 261


>gi|89894977|ref|YP_518464.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89334425|dbj|BAE84020.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 224

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           +C  C    C+ VCPV  + + +    +A +  +C+ C  C   CP  A
Sbjct: 100 SCNHCADPACMAVCPVKAYTKRDKDGIVAHNTKKCVGCAYCLYACPYHA 148


>gi|329114686|ref|ZP_08243445.1| NADH-quinone oxidoreductase subunit I [Acetobacter pomorum DM001]
 gi|326696166|gb|EGE47848.1| NADH-quinone oxidoreductase subunit I [Acetobacter pomorum DM001]
          Length = 162

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP +                    I   +CI CG+CE  CPVDAI
Sbjct: 60  EERCIACKL--CEATCPAEAITIEAEERDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  + +
Sbjct: 118 V--EGPNYEFATETREEL------MYDKNKLLANGDRWE 148


>gi|240103196|ref|YP_002959505.1| putative ATPase RIL [Thermococcus gammatolerans EJ3]
 gi|239910750|gb|ACS33641.1| Predicted ATPase, RNase L inhibitor-like protein [Thermococcus
          gammatolerans EJ3]
          Length = 590

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E      I    C  CG+C  +CP +AI
Sbjct: 10 DKCNPNKCGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAI 67


>gi|158423300|ref|YP_001524592.1| NADH dehydrogenase subunit I [Azorhizobium caulinodans ORS 571]
 gi|172047937|sp|A8I407|NUOI_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|158330189|dbj|BAF87674.1| NADH-quinone oxidoreductase chain I protein [Azorhizobium
           caulinodans ORS 571]
          Length = 162

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKEKLLANGDRWERE 150


>gi|56675784|emb|CAB82188.2| nitrate reductase beta-subunit [Serratia sp. SK-3-20-2]
          Length = 315

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+   +  + I  D+C    +C   CP   I  + +
Sbjct: 168 CEHCLNLACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWK 221


>gi|189500792|ref|YP_001960262.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides BS1]
 gi|189496233|gb|ACE04781.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides BS1]
          Length = 199

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C++T C+  CP    Y+ E+ +  I+ D C+ C  C   CP DA  P  
Sbjct: 60  CMHCENTPCLSACPSGATYKTEDGIIRINYDRCMGCYACSIACPYDARYPYD 111


>gi|332799384|ref|YP_004460883.1| NADP-dependent oxidoreductase domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332697119|gb|AEE91576.1| NADP-dependent oxidoreductase domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 315

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + C+ C   +CV+ C  +  +       ++PD CI CG C   CP   I
Sbjct: 264 IEDWCVGC--GECVKHCLYNALHVVNGHSTVNPDACILCGYCSGYCPEFCI 312


>gi|332292198|ref|YP_004430807.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170284|gb|AEE19539.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1023

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 850 CQHCNHAPCETVCPVAASAHGKQGQNHMTYNRCVGTRYCANNCPYKVRRFNW 901


>gi|310826808|ref|YP_003959165.1| hydrogenase large subunit domain protein [Eubacterium limosum
          KIST612]
 gi|308738542|gb|ADO36202.1| hydrogenase large subunit domain protein [Eubacterium limosum
          KIST612]
          Length = 566

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGLELW 66
          +C  C    C+  CPV      +N   I  D CI CG C   CP +A    ++   +  W
Sbjct: 10 SCRNCYK--CIRYCPVKAIKLMDNQAQIVEDLCIGCGNCFRICPQNAKYVASDVDSIRQW 67

Query: 67 LK 68
          L+
Sbjct: 68 LE 69


>gi|255008481|ref|ZP_05280607.1| putative ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 262

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + VT++CI CK   C  +CPV               +C  C  C   CP  A++ 
Sbjct: 187 PFYVTDDCIGCK--RCERICPVGNVVVIGWRPV-WGMDCTSCLACYHVCPKHAVQY 239


>gi|322418857|ref|YP_004198080.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
 gi|320125244|gb|ADW12804.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
          Length = 441

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C   CPVD     +     I    CI C  C   CPV A++ 
Sbjct: 21 KCIAC-GARCQSACPVDAIQMNDAGEPIIDASRCIGCVKCVKVCPVQALEM 70


>gi|218885272|ref|YP_002434593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756226|gb|ACL07125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 185

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  CK   CV+ C      +      + I  ++C   G C  +CP   I+ +TE      
Sbjct: 66  CQQCKKPPCVKACAAGAISKDTQTGIVRIDREKCTGAGTCIEKCPYGVIQFNTEGRFAHK 125

Query: 67  LKI 69
            ++
Sbjct: 126 CEL 128


>gi|83310748|ref|YP_421012.1| hydrogenase 2 protein HybA [Magnetospirillum magneticum AMB-1]
 gi|82945589|dbj|BAE50453.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 339

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  +C+ C    CV  CPV    +   +  +  + D CI C  C   CP    +   +  
Sbjct: 115 IKRSCLHCADPSCVSACPVSAMQKRATDGVVTYNKDACIGCRYCVAACPFGVPQFQYDTP 174

Query: 63  LEL 65
              
Sbjct: 175 KPE 177


>gi|317493909|ref|ZP_07952326.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918236|gb|EFV39578.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 181

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       ++F+ +  ++CI C  C   CP   ++  T P
Sbjct: 58  CRQCEDAPCANVCPNGAISRQKDFIYVSQEKCIGCKTCVVACPYGTMEVVTSP 110


>gi|308176273|ref|YP_003915679.1| respiratory nitrate reductase beta subunit [Arthrobacter
           arilaitensis Re117]
 gi|307743736|emb|CBT74708.1| respiratory nitrate reductase beta subunit [Arthrobacter
           arilaitensis Re117]
          Length = 545

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCVASCPSGAMYKRAEDGIVLVDQDACRGWRMCVSGCPYKKVYF 232


>gi|308051293|ref|YP_003914859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307633483|gb|ADN77785.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 193

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF +  + +  H  D+CI CG C   CP  A
Sbjct: 54  ISVACMHCSDAPCMAVCPADCFEQTADGIIRHSKDKCIGCGYCLYACPFGA 104


>gi|325679212|ref|ZP_08158803.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324109141|gb|EGC03366.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 558

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          NC  C    C+  CPV       N   I   ECI CG C   CP DA +   E
Sbjct: 11 NCKNCYK--CIRYCPVKSIRFSGNQAHIIEQECILCGQCVVVCPQDAKQIVDE 61


>gi|239617512|ref|YP_002940834.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
 gi|239506343|gb|ACR79830.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
          Length = 287

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + + CI C    C   C  D    G    ++ P  C  CG C   CP++AI  +      
Sbjct: 63  INDTCIAC--GICERTCRFDAIRPGNP-YSVDPYACEGCGACVLTCPINAISLNDNRSGV 119

Query: 65  LWL 67
            +L
Sbjct: 120 YYL 122


>gi|116695848|ref|YP_841424.1| benzoyl-CoA dioxygenase A [Ralstonia eutropha H16]
 gi|113530347|emb|CAJ96694.1| Benzoyl-CoA dioxygenase A [Ralstonia eutropha H16]
          Length = 426

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CPV           +  D+C  C  C   CP  +I  
Sbjct: 14 IDPEICIRCN--TCEATCPVGAITHDSRNYVVDADKCNLCMACISPCPTGSIDN 65


>gi|305665249|ref|YP_003861536.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Maribacter sp. HTCC2170]
 gi|88710002|gb|EAR02234.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Maribacter sp. HTCC2170]
          Length = 1039

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 866 CQHCNHAPCETVCPVAATSHGRQGQNQMAYNRCVGTRYCANNCPYKVRRFNW 917


>gi|328869461|gb|EGG17839.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           fasciculatum]
          Length = 213

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 111 EERCIACKL--CEAICPAQAITIEAEPRLDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 168

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K++ L +  + +  
Sbjct: 169 V--EGPNFEFTTESRIEL------LYNKEKLLQNGDRWETE 201


>gi|325663172|ref|ZP_08151622.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331086762|ref|ZP_08335839.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325470626|gb|EGC73856.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330409928|gb|EGG89363.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 56

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I+ D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSC--GACEAECPVGAISQGADHYEINADACVDCGACAAQCPTGAISAE 56


>gi|320181304|gb|EFW56223.1| NrfC-like protein [Shigella boydii ATCC 9905]
 gi|332093965|gb|EGI99018.1| hypothetical protein SD15574_1818 [Shigella dysenteriae 155-74]
          Length = 184

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E     +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGSVRVEKSQCIGCSYCIGACPYQ 99


>gi|308273888|emb|CBX30488.1| hypothetical protein N47_K27280 [uncultured Desulfobacterium sp.]
          Length = 343

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C    C EVC        ++ + I  ++C  CGVC   C   A+  D    +
Sbjct: 280 VDQGKCICC--GVCEEVCNWGAIKVIDDTVDIVKEKCEGCGVCVCSCTEGALWLDNVDLI 337

Query: 64  EL 65
           + 
Sbjct: 338 KK 339



 Score = 33.4 bits (75), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
                +G+  +++   +CI CGVCE  C   AIK   +   
Sbjct: 268 TYGKTKGKIVVSVDQGKCICCGVCEEVCNWGAIKVIDDTVD 308


>gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Synergistetes bacterium SGP1]
          Length = 628

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +    C  C  T C   CPV       +    I   +CI CG C   CP  AI+   
Sbjct: 574 IDAAQCRGC--TKCARSCPVGAISGVVKAPHLIDDGKCIRCGACMENCPFGAIREAW 628


>gi|317050864|ref|YP_004111980.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Desulfurispirillum indicum S5]
 gi|316945948|gb|ADU65424.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurispirillum indicum S5]
          Length = 591

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V  + CI C    C+ V CP   +      + I    C  C +C  ECP DAI
Sbjct: 534 HVDIKECIGC--GACLNVGCPALVWNASLKVVTIDTTMCTGCEICMYECPTDAI 585


>gi|227503848|ref|ZP_03933897.1| nitrate reductase [Corynebacterium striatum ATCC 6940]
 gi|227199672|gb|EEI79720.1| nitrate reductase [Corynebacterium striatum ATCC 6940]
          Length = 531

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 184 CEHCMNPTCVSSCPSGAMYKRAEDGIVLVDQDQCRGWRMCVSGCPYKKVYF 234


>gi|223007091|gb|ACM77784.1| nitrite oxidoreductase [uncultured bacterium]
          Length = 138

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I    C     C   CP      + 
Sbjct: 86  CNHCLNPSCVAACPSGALYKRGEDGIVLIDQSHCRAWRACVAACPYKKTYFNW 138


>gi|222445638|ref|ZP_03608153.1| hypothetical protein METSMIALI_01278 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349811|ref|ZP_05975228.1| heterodisulfide reductase, A subunit [Methanobrevibacter smithii
           DSM 2374]
 gi|222435203|gb|EEE42368.1| hypothetical protein METSMIALI_01278 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860596|gb|EFC92894.1| heterodisulfide reductase, A subunit [Methanobrevibacter smithii
           DSM 2374]
          Length = 662

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLA-----IHPDECIDCG 44
           YV+ E+C  C    CVE CP             V   Y            I  D CI+C 
Sbjct: 248 YVIEEDCTGC--GSCVEACPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKDYCIECM 305

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C+  C   AI  + +P    
Sbjct: 306 LCDQACERGAIDHNQQPSEIK 326



 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   CVE+CP        +       I+   C  CG C   CP  A+        +
Sbjct: 591 CGACE--VCVELCPYGAISITGDDNAAHAEINAALCKGCGTCVGACPSGAMDQQHFKTDQ 648

Query: 65  LWLKINSEY 73
           +  +I++  
Sbjct: 649 IMAQISAAL 657


>gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 626

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C    C   CP +           I  ++C+ CGVC  +CP  AI
Sbjct: 571 YVINPEICKGC--GLCARSCPQNAITGERGKPYRIDQEKCVKCGVCASKCPFKAI 623



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            I+P+ C  CG+C   CP +AI  +
Sbjct: 560 CPSGMCT-AFKKYVINPEICKGCGLCARSCPQNAITGE 596


>gi|154498821|ref|ZP_02037199.1| hypothetical protein BACCAP_02812 [Bacteroides capillosus ATCC
           29799]
 gi|150272211|gb|EDM99415.1| hypothetical protein BACCAP_02812 [Bacteroides capillosus ATCC
           29799]
          Length = 316

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
              E C  CK     +VCP+      +  L+I  D C +CG C  +C  DA+
Sbjct: 168 FDPEECNGCKKCGVAQVCPMGAAKLEDGELSIDKDVCNNCGRCIDKCYFDAM 219


>gi|146739152|gb|ABQ42611.1| HycB [Enterobacter aerogenes]
          Length = 203

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAAVCPVNAINRVDGAVQLNESLCVSCKLCAIACPFGAIEF 99


>gi|52549592|gb|AAU83441.1| archaeal flavoproteins [uncultured archaeon GZfos28G7]
          Length = 267

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M Y +  + C  C   +  + C  D  Y G     I   +C  CG+C   CP DAI    
Sbjct: 153 MPYSIDRDKCRGCDDCELRDSCEKDAIY-GAPIPQIDLLQCDGCGLCRELCPYDAINGGV 211

Query: 60  EPGLELWLKI 69
                  + I
Sbjct: 212 VEIKAREIDI 221


>gi|29654985|ref|NP_820677.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coxiella burnetii RSA 493]
 gi|154707199|ref|YP_001423730.1| electron transport complex protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161830706|ref|YP_001597520.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 331]
 gi|29542254|gb|AAO91191.1| electron transport complex protein [Coxiella burnetii RSA 493]
 gi|154356485|gb|ABS77947.1| electron transport complex protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161762573|gb|ABX78215.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 331]
          Length = 213

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  + CI C  T C++ CP D      +    +  D C  C +C P CPVD I     
Sbjct: 81  AFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCIDMKII 138

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L    K   + A QW +   KK
Sbjct: 139 APLTPHEK--KQKAQQWRSRYEKK 160


>gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 595

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           ++ E C  C    C   CPV            I P++C  C  C  +CP  AI
Sbjct: 543 IIPEECKKC--GLCARECPVGAIKGKPRETHEIDPEKCTKCEACLKKCPFGAI 593



 Score = 33.8 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +VCP     +  + + I P+EC  CG+C  ECPV AIK       E
Sbjct: 528 KVCPAGVCKK-LSRIRIIPEECKKCGLCARECPVGAIKGKPRETHE 572


>gi|268325665|emb|CBH39253.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [uncultured archaeon]
          Length = 729

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  E CI C    C EVCP       E      ++   C  CG C   CP  A       
Sbjct: 621 INEEICIGC--GTCAEVCPYGALELDEVMQVMTVNEAVCKGCGGCNSVCPSGAATMKHYR 678

Query: 62  GLELWLKINS 71
             +++ +I +
Sbjct: 679 DRQVYAQIEA 688


>gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M Y V    C  C    C +VCP+ C   E +    I   +C  CGVC  +CP  AI
Sbjct: 540 MKYTVEASKCKSC--GICAKVCPMSCIKGEKKVPYVIDNTKCAKCGVCMEKCPFKAI 594


>gi|170289699|ref|YP_001736515.1| indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173779|gb|ACB06832.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 649

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y V  + C  C+       CP   F +  + + I P  C  CG C   CP DAI+P  
Sbjct: 581 PYRVNKDKCTYCRVCINTFACP--AFVDTGSSVEIDPAICFGCGACVQVCPYDAIEPQE 637


>gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 618

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKP 57
           +  E C  C    C   CPVD  +          I  + CI CG C   C  +A+  
Sbjct: 564 IDQERCKACN--VCARNCPVDAVHGEVRKPETFYIDAEACIKCGTCATVCKFNAVVW 618


>gi|19552412|ref|NP_600414.1| nitrate reductase beta chain [Corynebacterium glutamicum ATCC
           13032]
 gi|62390076|ref|YP_225478.1| respiratory nitrate reductase oxidoreduct [Corynebacterium
           glutamicum ATCC 13032]
 gi|21323955|dbj|BAB98581.1| Nitrate reductase beta chain [Corynebacterium glutamicum ATCC
           13032]
 gi|41325412|emb|CAF19892.1| PROBABLE RESPIRATORY NITRATE REDUCTASE OXIDOREDUCT [Corynebacterium
           glutamicum ATCC 13032]
          Length = 531

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSSCPSGAMYKRAEDGIVLVDQDQCRGWRMCVSGCPYKKVYF 234


>gi|317133836|ref|YP_004089747.1| putative PAS/PAC sensor protein [Ruminococcus albus 7]
 gi|315450298|gb|ADU23861.1| putative PAS/PAC sensor protein [Ruminococcus albus 7]
          Length = 558

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          NC  C    C+  CPV       N   I   ECI CG C   CP DA +   E
Sbjct: 11 NCKNCYK--CIRHCPVKSIRFSGNQAHIIEQECILCGQCVVVCPQDAKQIVDE 61


>gi|238917868|ref|YP_002931385.1| hypothetical protein EUBELI_01949 [Eubacterium eligens ATCC
          27750]
 gi|238873228|gb|ACR72938.1| Hypothetical protein EUBELI_01949 [Eubacterium eligens ATCC
          27750]
          Length = 56

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M YV+ ++CI C    C   CPV+   EG     I+ D C+DCG C   CPV A
Sbjct: 1  MAYVINDDCISC--GACAAGCPVEAISEGAAHYEINADVCVDCGACAGTCPVGA 52


>gi|225028913|ref|ZP_03718105.1| hypothetical protein EUBHAL_03202 [Eubacterium hallii DSM 3353]
 gi|224953752|gb|EEG34961.1| hypothetical protein EUBHAL_03202 [Eubacterium hallii DSM 3353]
          Length = 287

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V + CI C    CV+ C  +     +  ++I   +C  CG C   CPVDA
Sbjct: 161 VEDKCIQC--GVCVKACRNEAITLEDGKISIDTGKCNYCGRCVKSCPVDA 208


>gi|168206256|ref|ZP_02632261.1| nitroreductase family protein [Clostridium perfringens E str.
          JGS1987]
 gi|170662298|gb|EDT14981.1| nitroreductase family protein [Clostridium perfringens E str.
          JGS1987]
          Length = 272

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + CI+CG C   CP +A+     
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMVDGKAHIKNESCIECGHCIAICPKEAVSDSDY 58

Query: 61 PGLE 64
             +
Sbjct: 59 DMSK 62


>gi|148244397|ref|YP_001219091.1| NADH dehydrogenase subunit I [Candidatus Vesicomyosocius okutanii
           HA]
 gi|156633542|sp|A5CXG5|NUOI_VESOH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146326224|dbj|BAF61367.1| NADH dehydrogenase I chain I [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP +                    I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPANAITIESKMRDDGTRRTTQYDIDLFKCIFCGFCEEACPVDAI 118


>gi|90410739|ref|ZP_01218754.1| HydN [Photobacterium profundum 3TCK]
 gi|90328370|gb|EAS44668.1| HydN [Photobacterium profundum 3TCK]
          Length = 182

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C +VCP +     +  + +    CI C  C   CP  A+ 
Sbjct: 58  CRQCDDAPCAQVCPNNAIVLEDGHVKVVQSRCIGCKTCVIACPYGAMN 105


>gi|219668381|ref|YP_002458816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538641|gb|ACL20380.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 184

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            C  C   +C  VCP   F + ++ +  I    C  C +C   CP DA + 
Sbjct: 51  ACNHCDSPECFRVCPQHAFNKRKDGIVEIDSSLCNGCRLCVKACPYDAPQY 101


>gi|330805166|ref|XP_003290557.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           purpureum]
 gi|325079303|gb|EGC32909.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           purpureum]
          Length = 203

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 101 EERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 158

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K++ L +  + +  
Sbjct: 159 V--EGPNFEFTTETRIEL------LYNKEKLLANGDRWETE 191


>gi|314969411|gb|EFT13509.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL037PA1]
          Length = 213

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
             C+   C++ CP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 76  NHCEFPICMKACPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|298376250|ref|ZP_06986206.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267287|gb|EFI08944.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 295

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          V   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK   E
Sbjct: 45 VKNKCIGC--GRCEAICPRGNIAIQDHFPVFNRQACVACKACERICPQNAIKFVGE 98


>gi|257388511|ref|YP_003178284.1| DMSO reductase family type II enzyme, iron- sulfur subunit
           [Halomicrobium mukohataei DSM 12286]
 gi|257170818|gb|ACV48577.1| DMSO reductase family type II enzyme, iron- sulfur subunit
           [Halomicrobium mukohataei DSM 12286]
          Length = 358

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  CVE CP    Y+ E    + +  D C     C   CP   +  +T
Sbjct: 154 CNHCTHPSCVEACPRSALYKREEDGIVLVDQDRCRGYRYCVEGCPYKKVYYNT 206


>gi|268591834|ref|ZP_06126055.1| cytochrome c nitrite reductase, Fe-S protein [Providencia rettgeri
           DSM 1131]
 gi|291312803|gb|EFE53256.1| cytochrome c nitrite reductase, Fe-S protein [Providencia rettgeri
           DSM 1131]
          Length = 223

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV+VCP    +  +    + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCESAPCVDVCPTGASFIDKTTGIVDVNPDLCVGCQYCIAACPYR 138


>gi|119995|sp|P07508|FER_CLOTM RecName: Full=Ferredoxin
 gi|225169|prf||1210220A ferredoxin
          Length = 55

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           Y +T+ CI C    C   CPV     G++   I  D CI+CG C   CPVDA
Sbjct: 1  AYFITDACISC--GACESECPVSPISPGDSVYVIDADACIECGACANVCPVDA 51


>gi|150018464|ref|YP_001310718.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149904929|gb|ABR35762.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 268

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V  E CI C    CV  CP        +    ++P+ CI+CG C   CP +AI     P 
Sbjct: 6  VSKEKCIKC--GMCVVECPTGVLKLEADGPKEVNPNACIECGHCVAVCPKEAIDNKKSPL 63

Query: 63 LEL 65
             
Sbjct: 64 AMQ 66


>gi|325497242|gb|EGC95101.1| pyruvate formate-lyase activating enzyme [Escherichia fergusonii
          ECD227]
          Length = 262

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
          + CI C   DCV VCP    Y     GE    ++  + CI C  CE  C  +A  I    
Sbjct: 5  DKCINC--GDCVNVCPAGIHYRAEVNGEMKHFVNRSKDCIGCRKCEEICTQNALDIMGKD 62

Query: 60 EPGLELWLKINSEY 73
              EL   I  +Y
Sbjct: 63 VTVSELMEIIMQDY 76


>gi|317499378|ref|ZP_07957646.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893347|gb|EFV15561.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 300

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             E C  C    C  VCP      G++    I P +C  C  C   CP  A+  + E   
Sbjct: 52  DKEKCAHC--GTCTHVCPNQAISMGDDSYVGIDPSKCAGCLQCVKNCPAKALSYEGEAKD 109


>gi|301062297|ref|ZP_07202963.1| putative anaerobic dimethyl sulfoxide reductase chain B [delta
           proteobacterium NaphS2]
 gi|300443597|gb|EFK07696.1| putative anaerobic dimethyl sulfoxide reductase chain B [delta
           proteobacterium NaphS2]
          Length = 166

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   CV  CP     +   +  + +    C+ C  C   CP  A +   E
Sbjct: 58  PCFHCEDPWCVAACPTGAMQKRQKDGIVFVDHSVCVGCKTCMSACPWGAPQWSEE 112


>gi|218782352|ref|YP_002433670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763736|gb|ACL06202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 287

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+ +CI C    CVEVCP+     GE    I    CI CG+C   CP DA++   +  L+
Sbjct: 217 VSGDCIAC--GKCVEVCPMHAIVLGEEKAEI-QGRCIGCGLCASNCPTDAMELYQKAPLK 273

Query: 65  LWLK 68
             +K
Sbjct: 274 DDIK 277


>gi|160884258|ref|ZP_02065261.1| hypothetical protein BACOVA_02236 [Bacteroides ovatus ATCC 8483]
 gi|237719500|ref|ZP_04549981.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|156109997|gb|EDO11742.1| hypothetical protein BACOVA_02236 [Bacteroides ovatus ATCC 8483]
 gi|229451360|gb|EEO57151.1| ferredoxin [Bacteroides sp. 2_2_4]
          Length = 317

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P +C  C  C   CP + I
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNTI 265



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 188


>gi|145295327|ref|YP_001138148.1| hypothetical protein cgR_1267 [Corynebacterium glutamicum R]
 gi|140845247|dbj|BAF54246.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 531

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSSCPSGAMYKRAEDGIVLVDQDQCRGWRMCVSGCPYKKVYF 234


>gi|117927911|ref|YP_872462.1| putative glutamate synthase (NADPH) small subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648374|gb|ABK52476.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus
           cellulolyticus 11B]
          Length = 543

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           NC  C +  C  VCP     + E  +  AI  D C  CG+C  ECPV AI+   EPG E
Sbjct: 484 NCFQCDN--CYAVCPDAAVLKVESGHGYAIDLDYCKGCGLCVAECPVGAIRTVPEPGTE 540


>gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
 gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
          Length = 628

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECP 51
           +  E CI C    C E CP    Y+ +     +   +C+ CG+C   CP
Sbjct: 564 IDPEICIGCDL--CRENCPQGAIYKDDGGFAVVDQSKCMRCGICFEICP 610



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + CP     +     +I P+ CI C +C   CP  AI  D 
Sbjct: 549 KRCPALSC-KSLVSYSIDPEICIGCDLCRENCPQGAIYKDD 588


>gi|325292642|ref|YP_004278506.1| NADH dehydrogenase I chain I [Agrobacterium sp. H13-3]
 gi|325060495|gb|ADY64186.1| NADH dehydrogenase I chain I [Agrobacterium sp. H13-3]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K+  L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YFDKQRLLDNGDRWERE 151


>gi|323182731|gb|EFZ68133.1| iron-sulfur protein [Escherichia coli 1357]
          Length = 134

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 34 ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 81


>gi|307718918|ref|YP_003874450.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM
          6192]
 gi|306532643|gb|ADN02177.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM
          6192]
          Length = 574

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y VT +C  C    C+  CPV           +  + C+ CG C   CP  A
Sbjct: 8  YTVTSDCFDCYK--CIRECPVKAIRISGGRAEVVEELCLYCGHCVEVCPSGA 57


>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 594

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C + CPV+C     +    I  D C+ CG C  +CP DAI
Sbjct: 541 IDQDKCKKC--GLCAKNCPVNCIDGDRKTQFVIDEDACVRCGTCYDKCPFDAI 591


>gi|261211645|ref|ZP_05925932.1| iron-sulfur cluster-binding protein [Vibrio sp. RC341]
 gi|260838995|gb|EEX65627.1| iron-sulfur cluster-binding protein [Vibrio sp. RC341]
          Length = 504

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 123 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPT 180

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 181 EAIHYALPNPTDTQKFIE 198



 Score = 36.9 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVD 53
           C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 371 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQ 415


>gi|239904991|ref|YP_002951730.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239794855|dbj|BAH73844.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 583

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y +   C  C    C+  CPV           + P+ CI CG C   CP  A
Sbjct: 8  YTIEAECQDCY--RCLRQCPVKAIQVENGRATVVPELCIACGQCVAACPSQA 57


>gi|219669379|ref|YP_002459814.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219539639|gb|ACL21378.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 224

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           +C  C    C+ VCPV  + + +    +A +  +C+ C  C   CP  A
Sbjct: 100 SCNHCADPACMAVCPVKAYTKRDKDGIVAHNTKKCVGCAYCLYACPYHA 148


>gi|55378003|ref|YP_135853.1| nitrate reductase subunit beta [Haloarcula marismortui ATCC 43049]
 gi|55230728|gb|AAV46147.1| nitrate reductase beta chain [Haloarcula marismortui ATCC 43049]
          Length = 358

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C H  CVE CP    Y+   +  + +  D C     C   CP   +  +T
Sbjct: 154 CNHCTHPSCVEACPRSALYKRQEDGIVLVDQDRCRGYRYCVEGCPYKKVYYNT 206


>gi|157830634|pdb|1CLF|A Chain A, Clostridium Pasteurianum Ferredoxin
          Length = 55

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y + ++C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A   +
Sbjct: 1  AYKIADSCVSC--GACASECPVNAISQGDSIFVIDADTCIDCGNCANVCPVGAPVQE 55


>gi|325265158|ref|ZP_08131884.1| putative pyruvate formate-lyase activating enzyme [Clostridium
          sp. D5]
 gi|324029562|gb|EGB90851.1| putative pyruvate formate-lyase activating enzyme [Clostridium
          sp. D5]
          Length = 302

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           +E C+ C    CV+ CP                +C  CG+C   C 
Sbjct: 49 DSERCVGC--GSCVKACPNGAIKMEGQKAVTDRAKCTACGICTDYCN 93


>gi|312136493|ref|YP_004003830.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermus fervidus DSM 2088]
 gi|311224212|gb|ADP77068.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermus fervidus DSM 2088]
          Length = 128

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 3  YVVTENCILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          Y V   C+ C  K+  C+ +CP D      + + I  D+CI CG C   CPV AI  D  
Sbjct: 29 YKVPIFCLHCDPKNAPCLNICPSDAIKSINDAIVIDRDKCIGCGSCVNVCPVGAIFLDER 88

Query: 61 PGLEL 65
             E 
Sbjct: 89 GLAEK 93


>gi|303256259|ref|ZP_07342275.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47]
 gi|302860988|gb|EFL84063.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47]
          Length = 450

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
           ++  +NC+ C    C + CPVD    G      I  D C+ CG C   CP  AI+  +  
Sbjct: 37  HINKDNCVGCD--TCRKFCPVDAISGGLGAIHKIRDDACVSCGQCLSACPFGAIEQMSFV 94

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
             +   LK   ++    P+   +      A +  G     
Sbjct: 95  DDVIAALKDPKKFVVAHPSPAVRVAL---AEEFGGKPGDL 131


>gi|303243536|ref|ZP_07329878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486097|gb|EFL49019.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 386

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V +NC+ C    CV  CPV+     +N   I   +CI C +C   CP +AI
Sbjct: 128 VMDNCVGC--GVCVPECPVEAITIEDNKAVIDKTKCIYCSICGQTCPWNAI 176



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          C LC    CVEVCP     E +  +  +P +C+ CG C   CP    + D       
Sbjct: 34 CTLC--MQCVEVCPTGALSEIDGKIDYNPVKCMKCGKCAEACPTKIKRVDNIYPYSK 88


>gi|302383058|ref|YP_003818881.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193686|gb|ADL01258.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAICPAQAITIESEPRSDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMD 94
                         NSE+AT+     +  K   L +  + +
Sbjct: 119 VEGP----------NSEFATETREELLYDKARLLDNGDRWE 149


>gi|237747267|ref|ZP_04577747.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378618|gb|EEO28709.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 260

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP---DTEPGL 63
           E+C +C    C ++CPV      +       + CI CG C   CP ++ +    D E   
Sbjct: 186 EDCNVC--GTCAQICPVHAITVSDTKTQTDENLCISCGACITACPSESRQYRGEDYEKFK 243

Query: 64  ELWLK 68
             +++
Sbjct: 244 GKFIE 248


>gi|63029706|gb|AAY27748.1| perchlorate reductase B [Dechloromonas agitata]
          Length = 333

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPV 52
           + V   C  C    C+E CP +  Y+ E    + IH ++C     C   CP 
Sbjct: 131 FYVPRMCNHCAKPACLEACPNEAIYKREQDGLVVIHQEKCKGAQACIQSCPY 182


>gi|191170336|ref|ZP_03031889.1| 4Fe-4S binding domain protein [Escherichia coli F11]
 gi|300976975|ref|ZP_07173710.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|190909144|gb|EDV68730.1| 4Fe-4S binding domain protein [Escherichia coli F11]
 gi|300308445|gb|EFJ62965.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|324014246|gb|EGB83465.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
          Length = 157

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSCCIGCKSCMLACPFGAM 104


>gi|332090809|gb|EGI95901.1| hypothetical protein SB521682_1815 [Shigella boydii 5216-82]
          Length = 184

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E     +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGSVRVEKSQCIGCSYCIGACPYQ 99


>gi|302343450|ref|YP_003807979.1| hypothetical protein Deba_2020 [Desulfarculus baarsii DSM 2075]
 gi|301640063|gb|ADK85385.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
          Length = 372

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C++  C  +CP        N +  I  D C+    C+  CP  
Sbjct: 120 IPRRCMHCRNAPCANLCPFGAARVEGNGVVHIDGDLCLGGAKCKNVCPWK 169


>gi|322419343|ref|YP_004198566.1| hypothetical protein GM18_1827 [Geobacter sp. M18]
 gi|320125730|gb|ADW13290.1| hypothetical protein GM18_1827 [Geobacter sp. M18]
          Length = 222

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   CV  CP++  ++  N + +   D+C   G C   CP  A   D 
Sbjct: 90  CNQCEKPPCVPACPINATFKLPNGIVVTDWDKCESIGTCVTACPYGARFLDE 141


>gi|253701320|ref|YP_003022509.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251776170|gb|ACT18751.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 439

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V+   CI C    C   CPVD     E     +   +CI C  C   CP  AI+    P 
Sbjct: 17 VLEGRCIAC-GARCQSACPVDAIQMNEAGEPIVDASKCIGCVKCVKVCPAQAIEMAFTPE 75

Query: 63 LE 64
           +
Sbjct: 76 EK 77


>gi|299135388|ref|ZP_07028578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298589796|gb|EFI50001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 658

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + C    C+++CP        + +AI  D C  CG C   CP  A      P   L  K+
Sbjct: 266 VGC--HRCLDLCPTGAITPNGDHVAIDADICAGCGQCATACPTGAAAYALPPADVLIHKL 323

Query: 70  NSEYATQWP 78
            +  A    
Sbjct: 324 RAMLAAYHQ 332



 Score = 37.3 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV VCP     +      L    D C+ CG+CE  CP   I
Sbjct: 503 DGCTLCL--SCVSVCPTGALSDDPDRPMLRFAEDACVQCGLCEATCPEKVI 551


>gi|110834471|ref|YP_693330.1| electron transport complex protein RnfB [Alcanivorax borkumensis
           SK2]
 gi|122959433|sp|Q0VP40|RNFB_ALCBS RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|110647582|emb|CAL17058.1| electron transport complex protein rnfB, putative [Alcanivorax
           borkumensis SK2]
          Length = 194

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I   + 
Sbjct: 109 AYIREDECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVEPCPVDCIDMLEV 166

Query: 60  EPGLELW 66
           +P L+ W
Sbjct: 167 KPTLQTW 173


>gi|15888607|ref|NP_354288.1| NADH dehydrogenase subunit I [Agrobacterium tumefaciens str. C58]
 gi|81764054|sp|Q8UFW9|NUOI_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|15156329|gb|AAK87073.1| NADH ubiquinone oxidoreductase chain I [Agrobacterium tumefaciens
           str. C58]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K+  L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YFDKQRLLDNGDRWERE 151


>gi|317471179|ref|ZP_07930550.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901394|gb|EFV23337.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 276

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C +VCP+      +         CI CG C  +CP  A   + E  L    +
Sbjct: 206 CDGC--GICAKVCPMGSIRREDVGTV--DGICIKCGACIKKCPKHAKYYEDEGYLYHKTE 261

Query: 69  INSEY 73
           +  +Y
Sbjct: 262 LEEQY 266


>gi|307182361|gb|EFN69628.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Camponotus floridanus]
          Length = 146

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 44  EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMSKCIYCGFCQEACPVDAI 101

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 102 VEGP----------NFEFSSETHEEMLYNKEKLLNNGDKWESE 134


>gi|167768087|ref|ZP_02440140.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
 gi|167710416|gb|EDS20995.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
 gi|291561083|emb|CBL39883.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing
           bacterium SSC/2]
          Length = 300

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             E C  C    C  VCP      G++    I P +C  C  C   CP  A+  + E   
Sbjct: 52  DKEKCAHC--GTCTHVCPNQAISMGDDSYVGIDPSKCAGCLQCVKNCPAKALSYEGEAKD 109


>gi|118602283|ref|YP_903498.1| NADH dehydrogenase subunit I [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|156633539|sp|A1AVS0|NUOI_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118567222|gb|ABL02027.1| NADH dehydrogenase subunit I [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP +                    I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPANAITIESEMRDDGTRRTIVYDIDLFKCIFCGFCEEACPVDAI 118


>gi|309790829|ref|ZP_07685373.1| hypothetical protein OSCT_1324 [Oscillochloris trichoides DG6]
 gi|308227116|gb|EFO80800.1| hypothetical protein OSCT_1324 [Oscillochloris trichoides DG6]
          Length = 439

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 10/69 (14%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--------AIHPDECIDCGVCEPECPVD 53
             +  + C  C    CV VCPV+     ++ +            D C+ CGVC   C   
Sbjct: 290 ATIDPQLCRGC--GRCVPVCPVNALQINQSEVGGRRRRWAVRDADLCLGCGVCYAACRHG 347

Query: 54  AIKPDTEPG 62
           A+       
Sbjct: 348 ALTMQPRER 356


>gi|291539035|emb|CBL12146.1| Methyl-accepting chemotaxis protein [Roseburia intestinalis
          XB6B4]
          Length = 642

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 6  TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +NC  C    CV  CPV           + +  ++CI CG C   C  +A +   +
Sbjct: 7  NDNCTGCNK--CVRDCPVLIANVATDAGKVTVDSEKCIACGACFDACEHNAREYQDD 61


>gi|284162651|ref|YP_003401274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|294862439|sp|P84626|HDLA_ARCPA RecName: Full=Heterodisulfide reductase subunit A-like protein
 gi|284012648|gb|ADB58601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 701

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C    CV +CP        Y       I+P  C  CGVC   CP  AI
Sbjct: 622 VDKEKCSGC--GICVPLCPYGAITMTKYNESMRAEINPALCKGCGVCAAACPSKAI 675


>gi|240143434|ref|ZP_04742035.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82]
 gi|257204625|gb|EEV02910.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82]
 gi|291534388|emb|CBL07500.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Roseburia intestinalis M50/1]
          Length = 288

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V + CI C    C + C         N + I+ D+C  CG C   CP DA
Sbjct: 162 VEDKCIGC--GVCEKACRQGAIKCEGNKVTINRDQCNYCGRCVKSCPTDA 209


>gi|254502708|ref|ZP_05114859.1| NADH-quinone oxidoreductase, chain I subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222438779|gb|EEE45458.1| NADH-quinone oxidoreductase, chain I subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 161

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 58  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 115

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 116 IV--EGPNFEFATETREEL------YYDKEKLLANGDRWERE 149


>gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus
           mobilis]
          Length = 609

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C   CP D      +    I  ++CI CG C   C  +A+
Sbjct: 561 CNGC--GLCRRDCPTDAITGSTKQRHVIDQEKCIRCGNCVDSCKRNAV 606


>gi|332704000|ref|ZP_08424088.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554149|gb|EGJ51193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 659

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + CI C    C+  CP        + G+    +    C  CG+C   CP  AI+   
Sbjct: 579 VDIKRCIGC--GKCIATCPFGAIEAIDFRGQPKAQVIETVCQGCGICTATCPQGAIQLQH 636

Query: 60  EPGLELWLKINS 71
               ++  ++N+
Sbjct: 637 FTDNQILAEVNA 648



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 26/84 (30%), Gaps = 26/84 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-------------------ENFLAIHPDECID- 42
           YV  E C  C    C+E CP     +                         I P+ C   
Sbjct: 236 YVNWEACTGC--GLCMEKCPSKKAKDDFNEQIGTTTAINIPSPQAIPKKAKIDPEFCRQF 293

Query: 43  ----CGVCEPECPVDAIKPDTEPG 62
               CGVC   CP  AI+ D +  
Sbjct: 294 TKGKCGVCAKICPSGAIEYDQQDE 317


>gi|303244434|ref|ZP_07330769.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermococcus
           okinawensis IH1]
 gi|302485132|gb|EFL48061.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermococcus
           okinawensis IH1]
          Length = 626

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  ENC  C    C +VC V+  +        + + CI CG C   CP +      E  +
Sbjct: 491 VNEENCNGC--GRCADVCKVEAIHMKGKTSYTNYNACIGCGKCIAACPNEGRDVKEEGYM 548


>gi|167748586|ref|ZP_02420713.1| hypothetical protein ANACAC_03359 [Anaerostipes caccae DSM 14662]
 gi|167651900|gb|EDR96029.1| hypothetical protein ANACAC_03359 [Anaerostipes caccae DSM 14662]
          Length = 216

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +++TE CI C    C +VCP  C  EG+    I  + C+ CG+C+ +CP  AI+   
Sbjct: 162 FLITEACIGC--GTCRDVCPQQCISEGKP-YKIQQEHCLHCGLCKEQCPAGAIQRKD 215


>gi|163843083|ref|YP_001627487.1| NADH dehydrogenase subunit I [Brucella suis ATCC 23445]
 gi|189030925|sp|B0CLD7|NUOI_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|163673806|gb|ABY37917.1| NADH-quinone oxidoreductase, chain I [Brucella suis ATCC 23445]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 21/100 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
           I     P  E   +   E          K + L +  + +
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKDKLLANGDRWE 149


>gi|83589885|ref|YP_429894.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83572799|gb|ABC19351.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 56

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M++ +TE C+ C    C + CP     EGE+   I P+ C DCG C   CP +AI  +
Sbjct: 1  MSHRITEECLAC--GVCADECPNGAISEGEDKYEIDPELCTDCGTCMEACPNEAIVAE 56


>gi|89894735|ref|YP_518222.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89334183|dbj|BAE83778.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 183

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +C  C    C  VCPV      ++ +   +   CI C VC   CP  A+
Sbjct: 56  SCRHCSEPQCAAVCPVGAIKSTDDGVVLHNELLCIGCQVCAAVCPYAAM 104


>gi|238787508|ref|ZP_04631306.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia frederiksenii ATCC
           33641]
 gi|238724295|gb|EEQ15937.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia frederiksenii ATCC
           33641]
          Length = 173

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C   CP      G++ + +    CI C  C   CP  A+  
Sbjct: 58  CHQCEDAPCENSCPNGAIVTGDHGVQVMASRCIGCKTCMLVCPFGAMNM 106


>gi|332750133|gb|EGJ80544.1| iron-sulfur protein [Shigella flexneri 4343-70]
          Length = 134

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 34 ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 81


>gi|288961355|ref|YP_003451694.1| protein [Azospirillum sp. B510]
 gi|288913663|dbj|BAI75150.1| protein [Azospirillum sp. B510]
          Length = 507

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI CG+C   C     +      L  +
Sbjct: 281 CIDC--GHCVQVCPTGIDIRDG-----IQMECIGCGLCVDACNDVMARIGRPGDLIRF 331


>gi|260892798|ref|YP_003238895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260864939|gb|ACX52045.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 657

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C    CVE C        +  + ++   C  CG C   CP  A+
Sbjct: 585 VYPERCNGC--GICVEECSYGALKLKDGKVEVNEAVCQGCGACAAMCPQRAL 634



 Score = 41.5 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 20/76 (26%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGVC 46
           V E C  C    C EVCPV+                           AI  D C  CG C
Sbjct: 242 VDEKCDRC--GRCEEVCPVEVPDPFNYGLSSRKAIYFPYRDAFPSRYAIDLDHCTRCGEC 299

Query: 47  EPECPVDAIKPDTEPG 62
              CP   IK D E  
Sbjct: 300 VKACPRGLIKLDREEQ 315


>gi|229523599|ref|ZP_04413004.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229337180|gb|EEO02197.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 570

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 201 KGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 258

Query: 63  LELWLK 68
            + +++
Sbjct: 259 TQKFIE 264



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 437 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 483


>gi|126465953|ref|YP_001041062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Staphylothermus marinus F1]
 gi|126014776|gb|ABN70154.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Staphylothermus marinus F1]
          Length = 178

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    C+EVCP       E+    +   +CI C  C   CP    + D
Sbjct: 60  SCLHCSRAPCIEVCPTGAMTRDESGAVYVEYMKCIGCMACLYACPFGIPELD 111


>gi|49474185|ref|YP_032227.1| NADH dehydrogenase subunit I [Bartonella quintana str. Toulouse]
 gi|81696041|sp|Q6FZY3|NUOI_BARQU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49239689|emb|CAF26064.1| NADH dehydrogenase I, I subunit [Bartonella quintana str. Toulouse]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPV+A
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRGNDGTRRTVRYDIDMVKCIYCGFCQEACPVEA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   ++  E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFATEMREEL------YYDKEKLLMNGDRWERE 151


>gi|116748363|ref|YP_845050.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697427|gb|ABK16615.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 281

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + CI C+   C+++C      F   +    I P  C  CGVC   C   AI+ D
Sbjct: 215 IDKDACIGCR--ACLKMCQFGAIGFSVLDRNADIDPLRCYGCGVCREACEAGAIRLD 269


>gi|331000390|ref|ZP_08324069.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859]
 gi|329571980|gb|EGG53652.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859]
          Length = 447

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
           ++  +NC+ C    C + CPVD    G      I  D C+ CG C   CP  AI+  +  
Sbjct: 34  HINKDNCVGCD--TCRKFCPVDAISGGLGAIHKIRDDACVSCGQCLSACPFGAIEQMSFV 91

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
             +   LK   ++    P+   +      A +  G     
Sbjct: 92  DDVIAALKDPKKFVVAHPSPAVRVAL---AEEFGGKPGDL 128


>gi|317470852|ref|ZP_07930233.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901679|gb|EFV23612.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 216

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +++TE CI C    C +VCP  C  EG+    I  + C+ CG+C+ +CP  AI+   
Sbjct: 162 FLITEACIGC--GTCRDVCPQQCISEGKP-YKIQQEHCLHCGLCKEQCPAGAIQRKD 215


>gi|291541232|emb|CBL14343.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Roseburia intestinalis XB6B4]
          Length = 288

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V + CI C    C + C         N + I+ D+C  CG C   CP DA
Sbjct: 162 VEDKCIGC--GVCEKACRQGAIKCEGNKVTINRDQCNYCGRCVKSCPTDA 209


>gi|261342166|ref|ZP_05970024.1| hydrogenase-4 component A [Enterobacter cancerogenus ATCC 35316]
 gi|288315499|gb|EFC54437.1| hydrogenase-4 component A [Enterobacter cancerogenus ATCC 35316]
          Length = 202

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     E  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAGVCPVNAITRVEGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|218885423|ref|YP_002434744.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756377|gb|ACL07276.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 169

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+  +CV+VCP     +   +  + +  D+CI CG C   CP    + + +
Sbjct: 59  PCFHCEQPECVDVCPTGAMTKREADGIVYVEADDCIGCGACLEACPWHIPQWNED 113


>gi|223935903|ref|ZP_03627818.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [bacterium Ellin514]
 gi|223895504|gb|EEF61950.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [bacterium Ellin514]
          Length = 1014

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C++  C  VCPV       + L +   + C+    C   C            +  +
Sbjct: 832 PCMHCENAPCELVCPVAATLHDHDGLNLQVYNRCVGTRYCSNNC---------PYKVRRF 882

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
             +  EY+     +     +     +  GV +K
Sbjct: 883 NFL--EYSNYHTPVLKAMRNPNVTVRWRGVMEK 913


>gi|118431333|ref|NP_147723.2| putative ATPase RIL [Aeropyrum pernix K1]
 gi|116062656|dbj|BAA80104.2| ABCE1 homolog [Aeropyrum pernix K1]
          Length = 614

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 17/80 (21%)

Query: 7  ENCI--LCKHTDCVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C    C + +C+ VCPV         D          I+ D CI C +C   CP DAI
Sbjct: 15 DSCKPKKCSY-ECIAVCPVNKSGRGVAIDADMASRGKPVIYEDACIGCALCVKACPFDAI 73

Query: 56 K-----PDTEPGLELWLKIN 70
                 + E        +N
Sbjct: 74 YIVNLPMELEEEAVHRYGVN 93



 Score = 38.4 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +  + CI C    CV+ CP D  Y     + +  +     GV   +     I  +
Sbjct: 51  PVIYEDACIGC--ALCVKACPFDAIYIVNLPMELEEEAVHRYGVNGFKLFRLPIPRE 105


>gi|71908197|ref|YP_285784.1| respiratory nitrate reductase beta subunit [Dechloromonas aromatica
           RCB]
 gi|71847818|gb|AAZ47314.1| respiratory nitrate reductase beta subunit [Dechloromonas aromatica
           RCB]
          Length = 333

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPV 52
           C  C    C+E CP +  Y+ E    + IH D+C     C   CP 
Sbjct: 137 CNHCTKPACLEACPNEAIYKREQDGIVVIHQDKCKGAQACVQSCPY 182


>gi|62180084|ref|YP_216501.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
          enterica subsp. enterica serovar Choleraesuis str.
          SC-B67]
 gi|62127717|gb|AAX65420.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
          enterica subsp. enterica serovar Choleraesuis str.
          SC-B67]
          Length = 140

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 LCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           C+   C +VCP    ++ ++  + ++ + CI C  C   CP  A + 
Sbjct: 4  HCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 51


>gi|119996|sp|P00200|FER_CLOTS RecName: Full=Ferredoxin
          Length = 55

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +++T+ CI C    C   CPV+  +EG     +  D CIDCG CE  CP  A+K +
Sbjct: 1  AHIITDECISC--GACAAECPVEAIHEGTGKYEVDADTCIDCGACEAVCPTGAVKAE 55


>gi|291545029|emb|CBL18138.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus sp. 18P13]
          Length = 575

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V  + C  CK   C+++ CP     EG     I   +C+ CG+C  +C   AI
Sbjct: 524 HVEADKCKSCKM--CLKLGCPAISMREG--KAVIDHTQCVGCGICMEQCKFGAI 573


>gi|218885697|ref|YP_002435018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756651|gb|ACL07550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 445

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + C+ C+   C   C  D      E   +I+ + C+ CG C   C  DAI       
Sbjct: 244 VAHDKCVGCR--TCARYCNQDAITFNEEQKASINHELCVGCGRCIATCNFDAIDTPWSGS 301

Query: 63  LELWLKINSEYAT 75
            +       EYA 
Sbjct: 302 SDDVNIRMVEYAK 314


>gi|118576871|ref|YP_876614.1| ATPase, RNase L inhibitor [Cenarchaeum symbiosum A]
 gi|118195392|gb|ABK78310.1| ATPase, RNase L inhibitor [Cenarchaeum symbiosum A]
          Length = 594

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 1  MTYVVT----ENC--ILCKHTDCVEVCPVD-------CFYEGENFLAIHPDECIDCGVCE 47
          MT+ V     + C    C   +C++ CPV+          E  +   I  + C   G+C 
Sbjct: 1  MTHRVAVVDHDLCQPRKC-GQECIKYCPVNKSGAECIVIDEETHKARIDENLCNGFGICA 59

Query: 48 PECPVDAI 55
            CP DAI
Sbjct: 60 KVCPFDAI 67


>gi|78221981|ref|YP_383728.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
 gi|78193236|gb|ABB31003.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
          Length = 368

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C++ C  D     E    + P  C  C  C   CP  A++       +L +K
Sbjct: 195 CTGC--GLCLKACAHDAIAIIEGKAKLDPAHCAGCSRCITVCPTKAVQIQWNEAADLVMK 252

Query: 69  INSEYAT 75
             +E+A 
Sbjct: 253 KMAEFAK 259


>gi|330937551|gb|EGH41492.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 291

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGASKLMHTVIIDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+ + C  C    CV  CPVDC       LA      I  G+       +A +    
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEMHPLPLA--TVTPIVGGLAPTPELQEARQRKRS 168

Query: 61  PGLELWLKINSEY 73
                +   N+  
Sbjct: 169 HARMRFEARNARL 181


>gi|325294618|ref|YP_004281132.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065066|gb|ADY73073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 181

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C    C+EVCP       E    + + P +CI C +C   CP   I  +
Sbjct: 59  KCRHCNPAPCMEVCPTYAISRDEKTESVLVDPAKCIACSMCAIACPFGVITFE 111


>gi|300941100|ref|ZP_07155612.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300454143|gb|EFK17636.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 203

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|260221063|emb|CBA29254.1| Nitrogen fixation protein fixG [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 496

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    CV+VCP                ECI CG C   C     K     GL  + 
Sbjct: 290 ACVDCSL--CVQVCPTGIDIRKGLQY-----ECIGCGACADVCDTVMDKMGYARGLVKYS 342

Query: 68  KINSEYATQWPN 79
             N+  +  W N
Sbjct: 343 TQNA-LSQHWTN 353


>gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 620

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C+ C    C +VCP D  +   +        C  CG C   CP+ A+
Sbjct: 562 VEADLCVSC--GACAKVCPFDAIHRDPSGKFAVDRRCEGCGACLDVCPMGAL 611


>gi|296124215|ref|YP_003631993.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Planctomyces limnophilus DSM 3776]
 gi|296016555|gb|ADG69794.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Planctomyces limnophilus DSM 3776]
          Length = 1099

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  C +VCPV    +  E    +  + C+    C   CP    + +       +L
Sbjct: 851 CQQCENAPCEQVCPVAATAHSPEGLNDMAYNRCVGTRYCANNCPYKVRRFN-------FL 903

Query: 68  KINSEY 73
             N +Y
Sbjct: 904 DYNKKY 909


>gi|224369237|ref|YP_002603401.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223691954|gb|ACN15237.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 355

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V ++ C  C+   C+E C +D     ++  A ++ D CI CG+C   CP  AI  + +  
Sbjct: 274 VDSDLCTGCE--TCLERCQMDAILLDQDMHALVNRDRCIGCGLCVTTCPTAAITLEQKDT 331

Query: 63  L 63
            
Sbjct: 332 D 332


>gi|224368236|ref|YP_002602399.1| IorA1 [Desulfobacterium autotrophicum HRM2]
 gi|223690952|gb|ACN14235.1| IorA1 [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + VT+ C    H DC++   CP   F+  E  + I P+ C+ C +C   CP +AI
Sbjct: 560 AFTVTDRCKN--HRDCMDSIACP--SFFIEEGRVKIDPNTCVGCALCAQICPENAI 611


>gi|222837010|gb|EEE75403.1| predicted protein [Populus trichocarpa]
          Length = 484

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   CV+VCPV               ECI CG+C   C     K +   GL     
Sbjct: 278 CIDCKM--CVQVCPVGIDIRNGLQY-----ECIGCGLCIDACNSIMDKMEYPRGLIRLTT 330

Query: 69  INSEYATQW 77
            N+  A  W
Sbjct: 331 QNA-MAGLW 338


>gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
           8482]
 gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
           8482]
          Length = 302

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    C++VCP          +     +C+ CG C  ECP  AI+         +L
Sbjct: 52  KCLGC--GTCLKVCPNGALTLTPEGIITDKQKCVLCGRCAEECPAMAIEISGTEYTAEYL 109


>gi|160898220|ref|YP_001563802.1| cytochrome c oxidase accessory protein CcoG [Delftia acidovorans
           SPH-1]
 gi|160363804|gb|ABX35417.1| cytochrome c oxidase accessory protein CcoG [Delftia acidovorans
           SPH-1]
          Length = 484

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   CV+VCPV               ECI CG+C   C     K +   GL     
Sbjct: 278 CIDCKM--CVQVCPVGIDIRNGLQY-----ECIGCGLCIDACNSIMDKMEYPRGLIRLTT 330

Query: 69  INSEYATQW 77
            N+  A  W
Sbjct: 331 QNA-MAGLW 338


>gi|331015678|gb|EGH95734.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 291

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+  
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMH 139



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+ + C  C    CV  CPVDC       LA      I  G+        A      
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEMHALPLA--NVTPIVGGLAPTADLQHARLRKRS 168

Query: 61  PGLELWLKINSEY 73
              + +   N+  
Sbjct: 169 HARQRFESRNARL 181


>gi|323697536|ref|ZP_08109448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio sp. ND132]
 gi|323457468|gb|EGB13333.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans ND132]
          Length = 270

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDT 59
            C+ C    CV VCPV    + E    +      CI C  C   CP  A   + 
Sbjct: 89  PCMQCGSPACVPVCPVVATDKNEEGGIVSQIYPRCIGCRYCMAACPYHARYFNW 142


>gi|315187124|gb|EFU20881.1| Fe-S cluster domain protein [Spirochaeta thermophila DSM 6578]
          Length = 574

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y VT +C  C    C+  CPV           +  + C+ CG C   CP  A
Sbjct: 8  YTVTSDCFDCYK--CIRECPVKAIRISSGRAEVVEELCLYCGHCVEVCPSGA 57


>gi|317056952|ref|YP_004105419.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7]
 gi|315449221|gb|ADU22785.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7]
          Length = 205

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V ++CI C    C+  CP     E      I  + C+ CG C   CPV A+
Sbjct: 153 YFVNDDCIGC--GSCLSACP-QSCIELNGKAVIRQENCLHCGNCAEVCPVGAV 202


>gi|299135024|ref|ZP_07028215.1| NADH-quinone oxidoreductase, chain I [Afipia sp. 1NLS2]
 gi|298590001|gb|EFI50205.1| NADH-quinone oxidoreductase, chain I [Afipia sp. 1NLS2]
          Length = 162

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 21/105 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           I     P  E   +   E          K   L +  + +    K
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKARLLANGDRWEREIAK 153


>gi|281422556|ref|ZP_06253555.1| conserved domain protein [Prevotella copri DSM 18205]
 gi|281403380|gb|EFB34060.1| conserved domain protein [Prevotella copri DSM 18205]
          Length = 55

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++CI C    C++ CP     EGE   +I+PD C +CG C   CP +AI
Sbjct: 1  MAYVIGDDCIAC--GTCIDECPSGAISEGE-KYSINPDLCTECGTCADVCPNEAI 52


>gi|224368284|ref|YP_002602447.1| HdrA1 [Desulfobacterium autotrophicum HRM2]
 gi|223691000|gb|ACN14283.1| HdrA1 [Desulfobacterium autotrophicum HRM2]
          Length = 1016

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 28/91 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECID-- 42
           YV  + CI C    C E CP     E                       AI PD CI   
Sbjct: 103 YVDEDKCIAC--GLCAEKCPKKVPDEYNEGLNYRKAAYIKYGQTVPLKYAIDPDNCIMIN 160

Query: 43  ---CGVCEPECPVDAIKPDTEPGLELWLKIN 70
              CGVC   CP  AI  + +P    ++ +N
Sbjct: 161 KGKCGVCAKICPTGAINFEMKP---EFVDVN 188



 Score = 41.5 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+NC  C    C++VCP +           +    +      C  CG+C   CP + I 
Sbjct: 939 VTQNCDGC--ALCLDVCPYNALTLVEFEENGKQHRRIKTDRALCKGCGICAATCPKEGIV 996

Query: 57  PD 58
            D
Sbjct: 997 VD 998


>gi|218282846|ref|ZP_03488999.1| hypothetical protein EUBIFOR_01585 [Eubacterium biforme DSM 3989]
 gi|218216302|gb|EEC89840.1| hypothetical protein EUBIFOR_01585 [Eubacterium biforme DSM 3989]
          Length = 377

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +V  + C  CK   C++ C  D   + E  + + I+   C+ CG C   C  DAI  + 
Sbjct: 191 PHVDEKLCRGCK--QCLKECANDGLEYDETTHKMHINETNCVGCGRCLGACNFDAISFNN 248

Query: 60  EPGLELWLKINSEYAT 75
               EL  K  +EY  
Sbjct: 249 YNANELLNKRMAEYTK 264


>gi|170766578|ref|ZP_02901031.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
 gi|170124016|gb|EDS92947.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
          Length = 157

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPV         + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVGAIRREHEHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|148643396|ref|YP_001273909.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
 gi|148552413|gb|ABQ87541.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
          Length = 662

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLA-----IHPDECIDCG 44
           YV+ E+C  C    CVE CP             V   Y            I  D CI+C 
Sbjct: 248 YVIEEDCTGC--GSCVEACPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKDYCIECM 305

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C+  C   AI  + +P    
Sbjct: 306 LCDQACERGAIDHNQQPSEIK 326



 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   CVE+CP        +       I+   C  CG C   CP  A+        +
Sbjct: 591 CGACE--VCVELCPYGAISITGDDNAAHAEINAALCKGCGTCVGACPSGAMDQQHFKTDQ 648

Query: 65  LWLKINSEY 73
           +  +I++  
Sbjct: 649 IMAQISAAL 657


>gi|217974489|ref|YP_002359240.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS223]
 gi|217499624|gb|ACK47817.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS223]
          Length = 490

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++ 
Sbjct: 290 CVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKPNLIGYMS 342

Query: 69  IN 70
            N
Sbjct: 343 EN 344


>gi|152999560|ref|YP_001365241.1| cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           baltica OS185]
 gi|151364178|gb|ABS07178.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           baltica OS185]
          Length = 490

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++ 
Sbjct: 290 CVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKPNLIGYMS 342

Query: 69  IN 70
            N
Sbjct: 343 EN 344


>gi|28871290|ref|NP_793909.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970874|ref|ZP_03398997.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301383775|ref|ZP_07232193.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059917|ref|ZP_07251458.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302130516|ref|ZP_07256506.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28854540|gb|AAO57604.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924397|gb|EEB57969.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 291

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+  
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMH 139



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+ + C  C    CV  CPVDC       LA      I  G+        A      
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEMHALPLA--NVTPIVGGLAPTADLQHARLRKRS 168

Query: 61  PGLELWLKINSEY 73
              + +   N+  
Sbjct: 169 HARQRFESRNARL 181


>gi|54298873|ref|YP_125242.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris]
 gi|53752658|emb|CAH14093.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris]
          Length = 204

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD      +   AI   EC  CG+C   CPVD I+ 
Sbjct: 81  EDECIGC--TKCIKACPVDAIIGSSKLMHAIIAHECTGCGLCVDPCPVDCIEM 131


>gi|319407259|emb|CBI80898.1| NADH dehydrogenase I chain I [Bartonella sp. 1-1C]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTIRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   ++  E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFATEMREEL------YYDKEKLLNNGDRWERE 151


>gi|299066971|emb|CBJ38166.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           CMR15]
          Length = 268

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           +  E CI C  T C++ CPVD           +  D C  C +C   CPVD I  
Sbjct: 85  IDPERCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDM 137


>gi|260768580|ref|ZP_05877514.1| electron transport protein hydN [Vibrio furnissii CIP 102972]
 gi|260616610|gb|EEX41795.1| electron transport protein hydN [Vibrio furnissii CIP 102972]
 gi|315180289|gb|ADT87203.1| electron transport protein (FeS senter) from formate to hydrogen
           [Vibrio furnissii NCTC 11218]
          Length = 181

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C +VCP +     + ++ +    CI C  C   CP  A+ 
Sbjct: 58  CRQCDDAPCAQVCPNNAIVHEDGYIKVIQSRCIGCKTCAIACPYGAMN 105


>gi|261402870|ref|YP_003247094.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           vulcanius M7]
 gi|261369863|gb|ACX72612.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           vulcanius M7]
          Length = 617

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  ENC  C    C EVC ++           + + CI CG C   CP +A +   E  
Sbjct: 490 VNEENCNGC--GRCAEVCKIEAIDIRGEMSYTNYNVCIGCGKCIKNCPNEAREVKEEGY 546


>gi|238793375|ref|ZP_04637001.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia intermedia ATCC
           29909]
 gi|238727344|gb|EEQ18872.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia intermedia ATCC
           29909]
          Length = 173

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C   CP      G + + +    CI C  C   CP  A+    +   +  +
Sbjct: 58  CHQCEDAPCENSCPNGAIVTGSHGVQVMASHCIGCKTCMLVCPFGAMNMVEQTSHDSMV 116


>gi|332752022|gb|EGJ82415.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           4343-70]
 gi|332999188|gb|EGK18775.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-218]
          Length = 223

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHVPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|315122717|ref|YP_004063206.1| NADH dehydrogenase subunit I [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496119|gb|ADR52718.1| NADH dehydrogenase subunit I [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 159

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG+C+  CPVDA
Sbjct: 56  EERCIACKL--CEAVCPAQAITIESGPRLHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 113

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K+  L +  + +  
Sbjct: 114 IV--EGPNFEFATETRKEL------YYDKERLLDNGDRWESE 147


>gi|302335104|ref|YP_003800311.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
 gi|301318944|gb|ADK67431.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
          Length = 314

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
           NC+ C    CV  CPV+     +    +     CI C  CE  C   A++   +  
Sbjct: 62  NCVDC--GACVAACPVNVHKMIDGRHVVDRSIPCIGCRKCEKACMYHALEVMGDDR 115


>gi|291550221|emb|CBL26483.1| Uncharacterized Fe-S center protein [Ruminococcus torques L2-14]
          Length = 376

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             +  E C  CK   C+  C  D   +      ++I  + C+ CG C   C  DAI    
Sbjct: 190 PTIDQEACRGCK--SCLRECANDGLIYDADARKMSIDLEHCVGCGRCIGACNFDAISFMD 247

Query: 60  EPGLELWLKINSEYATQWPNI 80
               ++   +N + A     +
Sbjct: 248 SAATKV---LNCKMAEYTKAV 265


>gi|291547662|emb|CBL20770.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus sp. SR1/5]
          Length = 287

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    C + C  +     ++ L I  ++C  CG C   CPVDA
Sbjct: 163 EDACIHC--GVCEKACRENAISFEDDKLVIDTEKCNYCGRCAKSCPVDA 209



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           + TE C  C    C + CPVD +   E ++ 
Sbjct: 190 IDTEKCNYC--GRCAKSCPVDAWDVNEAYIV 218


>gi|224588326|gb|ACN58950.1| iron-sulfur cluster-binding protein [uncultured bacterium BLR10]
          Length = 245

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+    CI C  T C++ CPVD      +    + PD C  C +C   CPVD I     
Sbjct: 80  AYIDESLCIGC--TLCIQACPVDAIIGAAKLMHTVVPDLCTGCDLCVNPCPVDCIVMHPV 137

Query: 61  PGLELW 66
                W
Sbjct: 138 TETTGW 143


>gi|206889528|ref|YP_002248525.1| iron-sulfur protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741466|gb|ACI20523.1| iron-sulfur protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 325

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           +   C+ C +  CV  CP     +       I+   C     C   CP  
Sbjct: 113 IPRRCMHCDNPPCVRECPFGALTKQPEGNSVINDKICFGGAKCRDVCPWH 162


>gi|172044708|gb|ACB69918.1| perchlorate reductase B [Dechlorosoma sp. KJ]
          Length = 333

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPV 52
           C  C    C+E CP +  Y+ E    + IH D+C     C   CP 
Sbjct: 137 CNHCTKPACLEACPNEAIYKREQDGIVVIHQDKCKGAQACVQSCPY 182


>gi|89899039|ref|YP_521510.1| FAD/NAD(P)-binding oxidoreductase [Rhodoferax ferrireducens T118]
 gi|89343776|gb|ABD67979.1| benzoyl-CoA oxygenase, component A [Rhodoferax ferrireducens
          T118]
          Length = 423

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C  +CPV           +  D+C  C  C   CP  +I  
Sbjct: 14 IDPEICIRCN--TCEAICPVAAITHDTRNYVVDADKCNLCMDCISPCPTGSIDN 65


>gi|251773162|gb|EES53715.1| NADH dehydrogenase (quinone) F subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 617

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+C  C    C  VCP       +     I+ + CI C  C   C   AI
Sbjct: 566 VIEEDCTTC--GLCEPVCPTGSVTWDKGEVAHINLETCIRCKACVDACKFRAI 616


>gi|289808203|ref|ZP_06538832.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 138

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|261350871|ref|ZP_05976288.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii
           DSM 2374]
 gi|288860208|gb|EFC92506.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii
           DSM 2374]
          Length = 252

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V + C+ C    C + CPV              +EC+ C  C   CP  AI+ D
Sbjct: 183 VDDKCVGC--GLCRKSCPVKAIDLQMKKPVWVKNECVMCLRCLHLCPKFAIQYD 234


>gi|217979057|ref|YP_002363204.1| NADH dehydrogenase subunit I [Methylocella silvestris BL2]
 gi|259514776|sp|B8EIM5|NUOI_METSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|217504433|gb|ACK51842.1| NADH-quinone oxidoreductase, chain I [Methylocella silvestris BL2]
          Length = 162

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E  ++   E          K   L + A+ +  
Sbjct: 117 IV--EGPNAEFSVETREEL------YYDKDRLLENGARWERE 150


>gi|169343842|ref|ZP_02864839.1| nitroreductase family protein [Clostridium perfringens C str.
          JGS1495]
 gi|169297962|gb|EDS80053.1| nitroreductase family protein [Clostridium perfringens C str.
          JGS1495]
          Length = 272

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + CI+CG C   CP +A+     
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEIVDGKAHIKNESCIECGHCIAICPKEAVSDSDY 58

Query: 61 PGLE 64
             +
Sbjct: 59 DMSK 62


>gi|167770144|ref|ZP_02442197.1| hypothetical protein ANACOL_01487 [Anaerotruncus colihominis DSM
          17241]
 gi|167667466|gb|EDS11596.1| hypothetical protein ANACOL_01487 [Anaerotruncus colihominis DSM
          17241]
          Length = 564

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV      +N   I P+ECI CG C   CP +A
Sbjct: 11 NCKNC--HKCIRSCPVKSIRFSDNQAKIIPEECILCGRCVVVCPQNA 55


>gi|323701561|ref|ZP_08113234.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533570|gb|EGB23436.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            V + C  CK   C   C    F + +    I +P  C+ C  C   CP +  K   E
Sbjct: 67  FVKQQCFHCKEPACASACFAKAFQKTKEGPVIYYPHLCVGCRYCMVACPFNIPKYQWE 124


>gi|300938216|ref|ZP_07152984.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           21-1]
 gi|300456806|gb|EFK20299.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           21-1]
          Length = 223

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 91  SCQHCDRAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 138


>gi|295106564|emb|CBL04107.1| Fe-S-cluster-containing hydrogenase components 2 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 207

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C+ VCP    Y+  + L +    C  C VC   CP  A+ P   
Sbjct: 51  CHQCEGAPCLAVCPEGAIYQERDRLQVDEARCTGCLVCALACPFGAVYPSAP 102


>gi|295105801|emb|CBL03344.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 247

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+   C + CP    Y+ + F  + +  D+C  C  C   CP  A +  ++     
Sbjct: 58  PCGHCEDPACAKACPNGALYKEDEFGAVLVDQDKCDGCRKCYDACPYGAPRFASDEPGTK 117

Query: 66  W 66
            
Sbjct: 118 M 118


>gi|52843076|ref|YP_096875.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630187|gb|AAU28928.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 204

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD      +   AI   EC  CG+C   CPVD I+ 
Sbjct: 81  EDECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEM 131


>gi|320180854|gb|EFW55777.1| Formate hydrogenlyase subunit 2 [Shigella boydii ATCC 9905]
          Length = 203

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|313216915|emb|CBY38127.1| unnamed protein product [Oikopleura dioica]
 gi|313233922|emb|CBY10090.1| unnamed protein product [Oikopleura dioica]
 gi|313237823|emb|CBY12956.1| unnamed protein product [Oikopleura dioica]
          Length = 159

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP                      I   +CI CG C   CPVDAI
Sbjct: 57  EERCIACKL--CEAACPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCMEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N EY+  T    +  K++ L +  K +  
Sbjct: 115 VEGP----------NFEYSTETHEELLYNKEKLLMNGDKWEPE 147


>gi|149376353|ref|ZP_01894116.1| Polyferredoxin [Marinobacter algicola DG893]
 gi|149359367|gb|EDM47828.1| Polyferredoxin [Marinobacter algicola DG893]
          Length = 477

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C +C   C     K +   GL  +  
Sbjct: 276 CIDC--GQCVQVCPTGIDIRDGLQY-----ECIGCALCIDACDEVMDKMEYPRGLIRYTT 328

Query: 69  INS 71
            N 
Sbjct: 329 ENE 331


>gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
            YV+  E C  C    CV+ CP      G++ +  I  ++C  CG C   CP  
Sbjct: 561 AYVIDPEQCRAC--QLCVKKCPAGAIDGGKDLVSIIDQEKCTKCGTCFEVCPPR 612


>gi|83590042|ref|YP_430051.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
            39073]
 gi|83572956|gb|ABC19508.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
            thermoacetica ATCC 39073]
          Length = 1487

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
              V    C  C    CV VCP +     E  +  I+  +C+ CG C  ECP  AI+
Sbjct: 1414 AVVDENKCAACL--TCVRVCPFNVPRINERNVAEINAVQCMGCGTCAGECPAKAIQ 1467


>gi|20093897|ref|NP_613744.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886838|gb|AAM01674.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 252

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD---TEPG 62
            + CI C+   C ++CPV+        L I  D+CI C  CE  CPVDAI  +   T P 
Sbjct: 132 KDRCIACRL--CEQICPVEAPNID--KLRIDEDKCIGCKACEHACPVDAIVIERTLTPPE 187

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
            E  ++++ +                 A +M+G
Sbjct: 188 FEREIELDQDMCIGCEVCVEV--CPVDAVEMEG 218



 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CVEVCPVD      +   I  D CI CG C   CP  AI
Sbjct: 197 DMCIGCE--VCVEVCPVDAVEMEGDVANISYDRCIRCGECARNCPTGAI 243



 Score = 39.6 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVDAI 55
           +  + CI CK   C   CPVD                + +  D CI C VC   CPVDA+
Sbjct: 157 IDEDKCIGCK--ACEHACPVDAIVIERTLTPPEFEREIELDQDMCIGCEVCVEVCPVDAV 214

Query: 56  KPD 58
           + +
Sbjct: 215 EME 217



 Score = 37.3 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
          +  E C+ CK   C E CPVD   E ++     +  D C+ C +C   CPVDAI
Sbjct: 44 IDPERCVGCK--TCYEECPVDALTEPDSTNPPEVDHDACVRCRLCAKSCPVDAI 95


>gi|317484410|ref|ZP_07943325.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924329|gb|EFV45500.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 179

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C    CVEVCP +     E +  + I  + C+ CG C+  CP   I  D
Sbjct: 84  ACVQCPQPRCVEVCPKEALIRRESDGIVFIREEACVGCGACQKACPHHLIWVD 136


>gi|291532647|emb|CBL05760.1| Uncharacterized conserved protein [Megamonas hypermegale ART12/1]
          Length = 331

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+ +NC+ C    C   CP       +  + I   +CI C  C+  CP  A+    
Sbjct: 264 VINKNCVAC--GRCSHHCPPKAITIIDKKVNIDYQKCIRCYCCQELCPHQAVDLKD 317


>gi|255014528|ref|ZP_05286654.1| uncharacterized Fe-S center protein, putative ferredoxin
           [Bacteroides sp. 2_1_7]
 gi|262383613|ref|ZP_06076749.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294511|gb|EEY82443.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 372

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + TE C  C    CV+ C  D  +   N    I  + C+ CG C   C  D         
Sbjct: 191 IDTEACKGCN--ICVKHCAHDAIHLNNNRKAEIDYERCVGCGQCVALCQYDGAVMGEGDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N +       +   K 
Sbjct: 249 SER---LNYKIDEYTKAVLADKP 268


>gi|238755292|ref|ZP_04616636.1| Formate hydrogenlyase subunit 2 [Yersinia ruckeri ATCC 29473]
 gi|238706526|gb|EEP98899.1| Formate hydrogenlyase subunit 2 [Yersinia ruckeri ATCC 29473]
          Length = 198

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+      N + ++ + C+ C +C   CP  AI       +++   
Sbjct: 57  CHQCEDAPCAQVCPVNAITHENNAIHLNENLCVSCKLCGIACPFGAITFSASTPVDIPRD 116

Query: 69  INSEYATQWPNITTKKES 86
            N+  A   P        
Sbjct: 117 CNTSKALPAPRAPRAISP 134


>gi|237728885|ref|ZP_04559366.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909507|gb|EEH95425.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 157

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 17/49 (34%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCP          + +    CI C  C   CP  A+ 
Sbjct: 57  ACHQCEDAPCANVCPTHAIRREHGHIFVEQARCIGCKSCMLACPFGAMN 105


>gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 597

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M Y V    C  C    C + CP+ C   E +    I   +C  CGVC  +CP  AI
Sbjct: 540 MKYTVDASKCKSC--GICAKACPMGCIKGEKKVPYVIDNSKCAKCGVCIEKCPFKAI 594


>gi|121601727|ref|YP_989078.1| NADH dehydrogenase subunit I [Bartonella bacilliformis KC583]
 gi|156632577|sp|A1USX5|NUOI_BARBK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|120613904|gb|ABM44505.1| NADH dehydrogenase (quinone), I subunit [Bartonella bacilliformis
           KC583]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPV+A
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I    E     +     E          K++ L +  + +  
Sbjct: 118 I---VEGPNFEFATEMRE-----ELYYDKEKLLLNGDRWERE 151


>gi|325960233|ref|YP_004291699.1| helix-turn-helix domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331665|gb|ADZ10727.1| helix-turn-helix domain protein [Methanobacterium sp. AL-21]
          Length = 149

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V ++CI C    CV+ C +D     +    I  D C  C +C  +CP ++I    E
Sbjct: 96  VKDSCIGC--GICVDTCLIDAIVLDDLKAHIDSDICCGCQICAEKCPTNSINILEE 149


>gi|307293262|ref|ZP_07573108.1| NADH-quinone oxidoreductase, chain I [Sphingobium chlorophenolicum
           L-1]
 gi|306881328|gb|EFN12544.1| NADH-quinone oxidoreductase, chain I [Sphingobium chlorophenolicum
           L-1]
          Length = 161

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDA+
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAQPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAV 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       I  K + L +  K +
Sbjct: 117 V--EGPNFEFSTETREEL------IYDKAKLLENGDKWE 147


>gi|295106049|emb|CBL03592.1| 4Fe-4S binding domain. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 184

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPV 52
          C  C+   C++ CP    Y   +   +    +CI C +C   CP 
Sbjct: 49 CNHCEEPICLKNCPTGAIYRAPDGTVVQDQSKCIGCRMCVMSCPY 93


>gi|284162499|ref|YP_003401122.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012496|gb|ADB58449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 128

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 4   VVTE--NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           +V +   CI C    C+ VCP++ F   E   + + P +CI CG C   C   A+
Sbjct: 72  IVKDDSKCIHC--GLCISVCPMEVFKFDENWRVVLDPKKCIHCGFCVKVCVTKAL 124


>gi|237712940|ref|ZP_04543421.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237723187|ref|ZP_04553668.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262409617|ref|ZP_06086157.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298484344|ref|ZP_07002505.1| ferredoxin [Bacteroides sp. D22]
 gi|229447059|gb|EEO52850.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229447709|gb|EEO53500.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262352470|gb|EEZ01570.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298269498|gb|EFI11098.1| ferredoxin [Bacteroides sp. D22]
          Length = 319

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP     +G+        +CI C  C   C   A   DT 
Sbjct: 252 CTHC--GLCVVRCPAGAITKGDELHT-DEAKCIKCCACVKACVKKARVYDTP 300


>gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
          Length = 623

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C  C    C + CP        ++   I+ D CI CG C+  C  DA+  +
Sbjct: 568 HINPEFCKGC--GKCAKNCPTGAITGARKHPYTINNDLCIKCGNCKDNCAFDAVYVE 622


>gi|91975993|ref|YP_568652.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91682449|gb|ABE38751.1| phenylglyoxylate:acceptor oxidoreductase PadI subunit
           [Rhodopseudomonas palustris BisB5]
          Length = 442

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C    CV VCP     +  +   I     +C+DC +C   C    I  D   
Sbjct: 54  CRQCGDPKCVTVCPAGALAKDGDTGVIGWDAGKCVDCLLCTVGCAYAGIARDETD 108


>gi|89896155|ref|YP_519642.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219670571|ref|YP_002461006.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89335603|dbj|BAE85198.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219540831|gb|ACL22570.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 179

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C  C+   CV  CP       + +  +  H D+CI C +C   CP  A +   E 
Sbjct: 57  SCNHCEEPKCVANCPTGALEKRKEDGIVIHHYDKCIGCRLCTWSCPYGAPQYREEE 112


>gi|328954203|ref|YP_004371537.1| Cobyrinic acid ac-diamide synthase [Desulfobacca acetoxidans DSM
           11109]
 gi|328454527|gb|AEB10356.1| Cobyrinic acid ac-diamide synthase [Desulfobacca acetoxidans DSM
           11109]
          Length = 292

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E C  C    C  +C  +   E     ++    C  C VC   CP +AI+ 
Sbjct: 61  AVIDPEKCTNC--GLCASMCQYEAIREHSQGFSVDSLRCEGCKVCVTFCPEEAIQF 114


>gi|150008731|ref|YP_001303474.1| Fe-S center protein ferredoxin [Parabacteroides distasonis ATCC
           8503]
 gi|298375974|ref|ZP_06985930.1| iron-sulfur cluster-binding protein [Bacteroides sp. 3_1_19]
 gi|149937155|gb|ABR43852.1| uncharacterized Fe-S center protein, putative ferredoxin
           [Parabacteroides distasonis ATCC 8503]
 gi|298267011|gb|EFI08668.1| iron-sulfur cluster-binding protein [Bacteroides sp. 3_1_19]
          Length = 372

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + TE C  C    CV+ C  D  +   N    I  + C+ CG C   C  D         
Sbjct: 191 IDTEACKGCN--ICVKHCAHDAIHLNNNRKAEIDYERCVGCGQCVALCQYDGAVMGEGDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N +       +   K 
Sbjct: 249 SER---LNYKIDEYTKAVLADKP 268


>gi|294677068|ref|YP_003577683.1| NADH-quinone oxidoreductase subunit I [Rhodobacter capsulatus SB
           1003]
 gi|1171863|sp|P42031|NUOI_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|3282573|gb|AAC24999.1| NUOI [Rhodobacter capsulatus]
 gi|294475888|gb|ADE85276.1| NADH-quinone oxidoreductase, I subunit [Rhodobacter capsulatus SB
           1003]
 gi|1586522|prf||2204231C NADH ubiquinone oxidoreductase
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E         TK++ L + A+ +  
Sbjct: 119 V--EGPNFEYATETREELF------YTKEKLLENGARWEAE 151


>gi|312621606|ref|YP_004023219.1| hypothetical protein Calkro_0500 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202073|gb|ADQ45400.1| protein of unknown function DUF362 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 375

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C   +C   CP            +   +CI C  C   CP  AI
Sbjct: 318 CIGC--AECFNACPAQAIEMRSRKAYVDLKKCIRCYCCHELCPAKAI 362


>gi|309389497|gb|ADO77377.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 329

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C +VCPVD     +N   I  ++C++CG C  +CP   I+ + +   ++ + 
Sbjct: 218 CIACSL--CAKVCPVDAIEIKDNLAVIDYEKCVNCGKCAEKCPTGTIQFEGKMIEKVEIN 275

Query: 69  INS 71
            N 
Sbjct: 276 DNC 278



 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +NC+ C  T C   CPV+    E +N   I  D+CI CG+C   C V A+
Sbjct: 274 INDNCVGC--TLCARACPVEAIEGEVKNRHQIDQDKCIQCGLCFEACNVKAV 323



 Score = 37.3 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E C+ C    C E CP          +      D C+ C +C   CPV+AI+ + +   +
Sbjct: 245 EKCVNC--GKCAEKCPTGTIQFEGKMIEKVEINDNCVGCTLCARACPVEAIEGEVKNRHQ 302



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
            DC  VCP D  Y  EN L  I P++C  CG C  ECP +
Sbjct: 147 GDCESVCPFDAIYMSENGLPQIDPEKCTACGKCITECPRN 186


>gi|294101032|ref|YP_003552890.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
 gi|293616012|gb|ADE56166.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
          Length = 281

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C  C    C + C        G +   ++   C  CGVCE  CP  AI  D++  + + 
Sbjct: 66  RCKGC--GVCADNCAFGALNQFGTHAPVVNMQLCHGCGVCELVCPQKAI-KDSKASIGIM 122

Query: 67  LKINSEYATQWPNITTKKESLP 88
              N E       I    E  P
Sbjct: 123 NIKNQESFWFLEGILDIGEPNP 144


>gi|269838183|ref|YP_003320411.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787446|gb|ACZ39589.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 242

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPD-TEPG 62
           +   C+ C    C  VCPV   Y     + +   + CI    C   C       +  EP 
Sbjct: 65  IPVPCMHCSEAPCEPVCPVYATYHTPEGINMQVYNRCIGTRYCAVNCHWHVRFFNFWEPK 124

Query: 63  LELWLK 68
               L+
Sbjct: 125 WPESLQ 130


>gi|237653628|ref|YP_002889942.1| thiamine pyrophosphate protein domain protein TPP-binding [Thauera
           sp. MZ1T]
 gi|237624875|gb|ACR01565.1| thiamine pyrophosphate protein domain protein TPP-binding [Thauera
           sp. MZ1T]
          Length = 451

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP     +      I  D  +C+DC +C   C    I  D 
Sbjct: 63  CRQCADPKCVTVCPAGALGKNGATGVIDWDASKCVDCLLCTIGCTYAGIALDE 115


>gi|222530101|ref|YP_002573983.1| hypothetical protein Athe_2135 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456948|gb|ACM61210.1| protein of unknown function DUF362 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 375

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C   +C   CP            +   +CI C  C   CP  AI
Sbjct: 318 CIGC--AECFNACPAQAIEMRSRKAYVDLKKCIRCYCCHELCPSKAI 362


>gi|168186747|ref|ZP_02621382.1| polyferredoxin [Clostridium botulinum C str. Eklund]
 gi|169295268|gb|EDS77401.1| polyferredoxin [Clostridium botulinum C str. Eklund]
          Length = 294

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C + CP D      N   I   +C++CG+C  +CP  AI+ 
Sbjct: 216 CIGC--GLCAKACPKDAITMENNLPVIDYSKCVNCGLCAMKCPTKAIQN 262


>gi|218780081|ref|YP_002431399.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761465|gb|ACL03931.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 269

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + E C LC   DCV++CP+      ++ +      CI C  C   CPV+A + +     +
Sbjct: 193 IEETCTLC--GDCVDMCPMGAITIEDDAVKTDNMACILCCACIKGCPVNAREVNNPDIAK 250

Query: 65  LW 66
           ++
Sbjct: 251 IF 252


>gi|15678133|ref|NP_275248.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621136|gb|AAB84604.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 622

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C   C  D        + I  + C+ C +C   CP+ AI    E  
Sbjct: 48  CQQCVDPSCARGCFRDAIRRENGAVKIDQESCVGCKLCMLMCPIGAITYTDEGM 101



 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C    C  VCP D     E+   I   +CI CG C   CP
Sbjct: 170 CVFC--GTCEIVCPTDAIKIVEDHAEIDKTKCIMCGSCLAACP 210



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI----DCGVCEPECPVDAI 55
           +  E+C+ CK   C+ +CP+      +  +     +CI    D   C   C    +
Sbjct: 74  IDQESCVGCKL--CMLMCPIGAITYTDEGMVKCDQQCIEKPGDTPACVAACEQGCL 127


>gi|328543695|ref|YP_004303804.1| NADH-quinone oxidoreductase subunit I [polymorphum gilvum
           SL003B-26A1]
 gi|326413439|gb|ADZ70502.1| NADH-quinone oxidoreductase subunit I [Polymorphum gilvum
           SL003B-26A1]
          Length = 162

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E         +K++ L +  + +  
Sbjct: 117 IV--EGPNFEFATETREEL------YYSKEKLLANGDRWERE 150


>gi|229520552|ref|ZP_04409976.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80]
 gi|229342376|gb|EEO07370.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80]
          Length = 553

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGTDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 40.7 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|255691579|ref|ZP_05415254.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260622788|gb|EEX45659.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 300

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV+ CP +      N   I P++C  C  C   CP ++I     P  + 
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNSIIELNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KAE 278



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDETKCTACGACVKACPKAII 188


>gi|164688323|ref|ZP_02212351.1| hypothetical protein CLOBAR_01968 [Clostridium bartlettii DSM
           16795]
 gi|164602736|gb|EDQ96201.1| hypothetical protein CLOBAR_01968 [Clostridium bartlettii DSM
           16795]
          Length = 421

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E+C+ C    C + CP+D         G   + I  D C+ CGVC   C   +I
Sbjct: 287 VNDESCVKC--GKCEKACPIDAISLIKDENGNKKVDIDYDVCLGCGVCARNCHKGSI 341


>gi|149912039|ref|ZP_01900632.1| Electron transport complex protein rnfB [Moritella sp. PE36]
 gi|149804900|gb|EDM64935.1| Electron transport complex protein rnfB [Moritella sp. PE36]
          Length = 182

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ E+CI C  T C++ CPVD           +  D C  C +C   CP D I  +    
Sbjct: 110 IIEEDCIGC--TKCIQACPVDAIAGATRAMHTVIVDSCTGCKLCVAPCPTDCIVMEPVQA 167

Query: 63  LELW 66
              W
Sbjct: 168 AWKW 171


>gi|325262177|ref|ZP_08128915.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
 gi|324033631|gb|EGB94908.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
          Length = 296

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            E C+ C    C  VCP       EN     P++CI CG C   C  +A++ 
Sbjct: 52  KERCVQC--GACGSVCPSHAHIFDENKHLFEPEKCIRCGACAEVCCTEALEM 101


>gi|300742076|ref|ZP_07072097.1| nitrate reductase, beta subunit [Rothia dentocariosa M567]
 gi|311111993|ref|YP_003983215.1| respiratory nitrate reductase subunit beta [Rothia dentocariosa
           ATCC 17931]
 gi|300381261|gb|EFJ77823.1| nitrate reductase, beta subunit [Rothia dentocariosa M567]
 gi|310943487|gb|ADP39781.1| respiratory nitrate reductase, beta subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 537

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D C     C   CP   +  
Sbjct: 186 CEHCLNPSCMAACPSGAIYKRAEDGIVLVDQDRCRGWRQCITGCPYKKVYF 236


>gi|161502103|ref|YP_001569215.1| hypothetical protein SARI_00120 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863450|gb|ABX20073.1| hypothetical protein SARI_00120 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 169

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 18 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 66


>gi|297619109|ref|YP_003707214.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378086|gb|ADI36241.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 654

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           Y+  E C  C    C EVCP+    E +                      I  + CIDCG
Sbjct: 240 YLSEEKCTGC--GSCAEVCPISVPNEFDMGLGMRKAIYKPFPQAVPAKYTIDMEHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPG 62
           +C   C   AI  + +P 
Sbjct: 298 LCSRVCGPQAIDYNQKPE 315



 Score = 34.6 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + ++ C  C    CV+ CP         +G+  + +    C  CG C   CP  A++   
Sbjct: 579 IDSDICGAC--GICVQQCPYGAPRFVEKDGKLSVEVISALCKGCGTCAAGCPSGALEQSH 636

Query: 60  EPGLELWLKI 69
               +++ +I
Sbjct: 637 FKTGQIYHQI 646


>gi|126729406|ref|ZP_01745220.1| benzoyl-CoA oxygenase, A subunit [Sagittula stellata E-37]
 gi|126710396|gb|EBA09448.1| benzoyl-CoA oxygenase, A subunit [Sagittula stellata E-37]
          Length = 395

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  E CI C    C   CP++     ++ + + PD+C  C  C P CP  +I        
Sbjct: 11 IDPEICIRCY--TCEMTCPIEAITHNDDNVVVDPDKCNFCMDCIPVCPTGSI-------- 60

Query: 64 ELWLKINSEYA----TQWPNITTKKESLPSAAKMD 94
          + W  +   Y+      W  +  +++    A + D
Sbjct: 61 DEWRVVREPYSLDAQFGWVELPEQEDL--GADEAD 93


>gi|146312827|ref|YP_001177901.1| electron transport protein HydN [Enterobacter sp. 638]
 gi|145319703|gb|ABP61850.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Enterobacter
           sp. 638]
          Length = 181

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP         F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAINRENGFVQVMQERCIGCKTCVVACPYGAM 104


>gi|78048263|ref|YP_364438.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78036693|emb|CAJ24384.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 154

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
           M+  + E C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 61  MSLKINELCVNCD--VCEPACPNHAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 118

Query: 55  IKPDT--EPGLELWLKINSEYATQWPNITTKKESLP 88
           I PD       +  L    +     P +  ++   P
Sbjct: 119 IDPDPAIPETHDQLLAKLMQLQRDHPELYEQEPPAP 154


>gi|2127962|pir||E64448 heterodisulfide reductase (EC 1.-.-.-) - Methanococcus jannaschii
          Length = 460

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV    C  C    C  VCP++   E +                      I  D CI CG
Sbjct: 42  YVDENICTGC--GACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTIDMDHCIRCG 99

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +CE  C   AI+ D +P    
Sbjct: 100 LCEKACGPGAIRYDQKPEEIK 120



 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + C  C    C ++CP +        G     ++   C  CG C   CP  A++
Sbjct: 379 AVVDEDVCGGC--QVCAKMCPYNAITYVEKDGHLVAQVNDVACKGCGSCAGACPSGAMQ 435


>gi|302349094|ref|YP_003816732.1| Electron transport protein, containing 4Fe-4S binding domain
           protein [Acidilobus saccharovorans 345-15]
 gi|302329506|gb|ADL19701.1| Electron transport protein, containing 4Fe-4S binding domain
           protein [Acidilobus saccharovorans 345-15]
          Length = 172

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   CVE+CP     +G+     +   +CI C VC   CP  A + +   
Sbjct: 56  CQQCEPAPCVELCPTGALSKGKLGEVNLDKGKCIGCRVCSEVCPYGAARMEPRE 109


>gi|289676762|ref|ZP_06497652.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae FF5]
          Length = 291

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD           +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGASRLMHTVIIDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+ + C  C    CV  CPVDC       LA      I  G+       +A +    
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEMHPLPLA--TVTPIVGGLAPTPELQEARQRKRS 168

Query: 61  PGLELWLKINSEY 73
                +   N+  
Sbjct: 169 HARMRFEARNARL 181


>gi|240102125|ref|YP_002958433.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
           gammatolerans EJ3]
 gi|239909678|gb|ACS32569.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
           gammatolerans EJ3]
          Length = 229

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V+T  CI C    C   CP       E    I  + CI CG C   CP
Sbjct: 171 VLTGLCIGC--GACELSCPTGAIRLVEKRPTIIQERCIRCGTCYIRCP 216


>gi|225570897|ref|ZP_03779920.1| hypothetical protein CLOHYLEM_07001 [Clostridium hylemonae DSM
          15053]
 gi|225160359|gb|EEG72978.1| hypothetical protein CLOHYLEM_07001 [Clostridium hylemonae DSM
          15053]
          Length = 263

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD--AIKPD 58
          M  +  E CI C    C   CP D     E    +   +C+ CG C   CPV+  AI   
Sbjct: 1  MIQIDKEKCIGC--GACKRDCPADAIKIREGKAEV-FKDCLHCGHCVAVCPVNAAAIPEY 57

Query: 59 TEPGLELWLK 68
              +E + K
Sbjct: 58 DMAEVEAYEK 67


>gi|218439098|ref|YP_002377427.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171826|gb|ACK70559.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 533

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M Y + +NC  C    C   CP    +  +    I    C DC     E       P + 
Sbjct: 1  MPYTIPDNCYSC--GTCKPQCPTGAIHLDDGKYWIESGLCNDCNEYAGEPQCVVHCPISS 58

Query: 61 P 61
          P
Sbjct: 59 P 59


>gi|89893996|ref|YP_517483.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89333444|dbj|BAE83039.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 202

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y  +  C  C+   CV+ CP    +  ++        +C+ C  C   CP    +   E
Sbjct: 62  YHYSGACNHCQEAKCVQGCPTGALHFADDGTVQHDRKKCVGCKYCTWNCPYSVPQFIEE 120


>gi|295087952|emb|CBK69475.1| 4Fe-4S binding domain. [Bacteroides xylanisolvens XB1A]
          Length = 319

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP     +G+        +CI C  C   C   A   DT 
Sbjct: 252 CTHC--GLCVVRCPAGAITKGDELHT-DEAKCIKCCACVKACVKKARVYDTP 300


>gi|212224064|ref|YP_002307300.1| ATPase, N-terminus [Thermococcus onnurineus NA1]
 gi|212009021|gb|ACJ16403.1| ATPase, N-terminus [Thermococcus onnurineus NA1]
          Length = 295

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            ++ TE+CI C    C E CP DC    +    +    C  C VC   CP
Sbjct: 64  AHINTESCIRC--GICQERCPYDCIKVIDGDYVVSELTCEGCNVCSLVCP 111


>gi|160892005|ref|ZP_02073008.1| hypothetical protein BACUNI_04464 [Bacteroides uniformis ATCC 8492]
 gi|156858483|gb|EDO51914.1| hypothetical protein BACUNI_04464 [Bacteroides uniformis ATCC 8492]
          Length = 315

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C +  CV+ CP     +G+    +  ++CI C  C   CP  A   DT 
Sbjct: 243 VDAERCTHCGY--CVKHCPAGAIIKGDECNTV-AEKCIKCCACVKGCPQKARTYDTP 296



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 2/30 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           V E CI C    CV+ CP         F  
Sbjct: 272 VAEKCIKC--CACVKGCPQKARTYDTPFAV 299


>gi|160874179|ref|YP_001553495.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS195]
 gi|160859701|gb|ABX48235.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS195]
 gi|315266411|gb|ADT93264.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS678]
          Length = 490

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++ 
Sbjct: 290 CVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACIDACNETMLKFDYKPNLIGYMS 342

Query: 69  IN 70
            N
Sbjct: 343 EN 344


>gi|31747592|gb|AAO38266.1| NADP-reducing hydrogenase subunit C [Leptospirillum ferrooxidans]
          Length = 617

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+C  C    C  VCP     +E      I    CI C  C   C   AI
Sbjct: 566 VIEEDCTTC--GLCEPVCPSGSVTWEKGEVAHIDLTTCIRCKACVDACKFRAI 616


>gi|23013091|ref|ZP_00053036.1| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone
           oxidoreductase 23 kD subunit (chain I) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 162

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      +   +CI CG+C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAICPAQAITIEPEPRPDGSRRARRYDLDMTKCIYCGLCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +  +E       +  K + L +  + +  
Sbjct: 118 V--EGPNFEYATETRAEL------MYNKSKLLANGDRWEAE 150


>gi|330877327|gb|EGH11476.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 291

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+  
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMH 139



 Score = 33.4 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 4/73 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+ + C  C    CV  CPVDC       LA      I  G+        A      
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEMHALPLA--TVTPIIGGLAPTADLQHARLRKRS 168

Query: 61  PGLELWLKINSEY 73
                +   N+  
Sbjct: 169 HARLRFESRNARL 181


>gi|320100610|ref|YP_004176202.1| thiamine pyrophosphate TPP-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319752962|gb|ADV64720.1| thiamine pyrophosphate TPP-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 625

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y V    C  C        CP     EG     I  ++C  CG+C   C  +AI
Sbjct: 566 PYTVDPGKCTGCGACIAATGCPAIFLSEG--KAVIAVEDCTGCGLCARYCGFNAI 618


>gi|309781131|ref|ZP_07675869.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           sp. 5_7_47FAA]
 gi|308920197|gb|EFP65856.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           sp. 5_7_47FAA]
          Length = 276

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E CI C  T C++ CPVD           +  D C  C +C P CPVD I  
Sbjct: 87  AVIDPERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDM 141


>gi|296104400|ref|YP_003614546.1| formate hydrogenlyase subunit 2 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295058859|gb|ADF63597.1| formate hydrogenlyase subunit 2 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 202

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAGVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|289523834|ref|ZP_06440688.1| iron-sulfur cluster-binding protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502924|gb|EFD24088.1| iron-sulfur cluster-binding protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 158

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V   C  C    C+ VC        +N +  +   +CI C +C   CP   +    E  
Sbjct: 48  VPMTCQQCDDAPCIGVCKTGALSRDDNNVVQVDASKCIGCRMCVMACPFGNMSYHWEEN 106


>gi|282882984|ref|ZP_06291588.1| ferredoxin [Peptoniphilus lacrimalis 315-B]
 gi|300813228|ref|ZP_07093596.1| ferredoxin [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|281297191|gb|EFA89683.1| ferredoxin [Peptoniphilus lacrimalis 315-B]
 gi|300512681|gb|EFK39813.1| ferredoxin [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 56

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +T+ CI C    C   CPVDC  +G+    I+PD+CIDCG C   CPV A  P+ 
Sbjct: 1  MAYKITDACIAC--GACQAECPVDCISDGD-IYQINPDQCIDCGSCAGVCPVGAPVPED 56


>gi|218887774|ref|YP_002437095.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758728|gb|ACL09627.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 255

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    CV VCPV    + E    +      CI C  C   CP  A   +       
Sbjct: 74  PCMQCGKPSCVSVCPVIATDKNEEGGIVSQVYPRCIGCRYCMASCPYHARYFNWFDPTWP 133


>gi|182705280|sp|P60200|HDRA_METJA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
          Length = 657

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV    C  C    C  VCP++   E +                      I  D CI CG
Sbjct: 239 YVDENICTGC--GACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTIDMDHCIRCG 296

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +CE  C   AI+ D +P    
Sbjct: 297 LCEKACGPGAIRYDQKPEEIK 317



 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + C  C    C ++CP +        G     ++   C  CG C   CP  A++
Sbjct: 576 AVVDEDVCGGC--QVCAKMCPYNAITYVEKDGHLVAQVNDVACKGCGSCAGACPSGAMQ 632


>gi|70732171|ref|YP_261927.1| RnfABCDGE type electron transport complex subunit B [Pseudomonas
           fluorescens Pf-5]
 gi|68346470|gb|AAY94076.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 401

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +   ++  DEC  C +C   CPVD I  
Sbjct: 74  AHIREAECIGC--TKCIQACPVDAIVGAAKLMHSVLIDECTGCDLCVAPCPVDCIDM 128


>gi|48675342|dbj|BAD22818.1| ferredoxin1 [Heliobacillus mobilis]
          Length = 55

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +++ C+ C    CV+ CPV    +G +   I+ D CIDCG C   CP  AI
Sbjct: 1  MAYKISDACVNC--GSCVDACPVGAIEKGSDIYCIN-DTCIDCGSCVDTCPAGAI 52


>gi|89895077|ref|YP_518564.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219669489|ref|YP_002459924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89334525|dbj|BAE84120.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219539749|gb|ACL21488.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 182

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C+   C+  CP   +   EN +      +C+ C +C   CP  A + D
Sbjct: 53  ISMACNHCQDPQCLLNCPAGAYTRLENGIVYQDHAKCLGCRMCTYACPYGAPQYD 107


>gi|332096054|gb|EGJ01059.1| 4Fe-4S binding domain protein [Shigella boydii 3594-74]
          Length = 166

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 62  DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 117


>gi|332087445|gb|EGI92573.1| hydrogenase-4 component A [Shigella boydii 5216-82]
          Length = 203

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCEVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|327401002|ref|YP_004341841.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316510|gb|AEA47126.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 793

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            YV+ E C  C    C EVC  +          + P+ C  CG C   CP +A++
Sbjct: 566 AYVIPELCFGCNL--CKEVCDFNAIDMAWGKAYVKPN-CTGCGACAAACPTNAMQ 617



 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 20/72 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGV 45
            VT+ C  C    C  +CPV+   E E                      I  + C+ CG+
Sbjct: 235 FVTDACTGC--GVCATLCPVEVPNEFEMGLANRKAIYIPFPQAVPLQYTIDAEHCLGCGM 292

Query: 46  CEPECPVDAIKP 57
           C   C   AI  
Sbjct: 293 CSDVCSASAIDF 304


>gi|304314490|ref|YP_003849637.1| F420-dependent sulfite reductase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587949|gb|ADL58324.1| F420-dependent sulfite reductase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 690

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V E C  C    C EVC V+           + D C+ CG C  ECP  A +   E  
Sbjct: 561 VEEICNGC--GRCFEVCKVEAISVRGETSYTNHDLCVGCGKCIRECPHTARRAREEGY 616


>gi|255037230|ref|YP_003087851.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dyadobacter fermentans DSM 18053]
 gi|254949986|gb|ACT94686.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dyadobacter fermentans DSM 18053]
          Length = 1031

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C  VCPV         L  +  + C+    C   CP    + + 
Sbjct: 844 CQHCNNAPCETVCPVLATTHSSEGLNQMTYNRCVGTRYCANNCPYKVRRFNW 895


>gi|7321229|emb|CAB82173.1| nitrate reductase beta-subunit [Pseudomonas sp. SK-1-3-4]
          Length = 321

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPTCAVSCPSGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFNWK 221


>gi|17987433|ref|NP_540067.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 1 str. 16M]
 gi|256044489|ref|ZP_05447393.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563843|ref|ZP_05834329.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. 16M]
 gi|265990913|ref|ZP_06103470.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. Rev.1]
 gi|81851731|sp|Q8YGK8|NUOI_BRUME RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|17983125|gb|AAL52331.1| NADH-quinone oxidoreductase chain i [Brucella melitensis bv. 1 str.
           16M]
 gi|260153859|gb|EEW88951.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. 16M]
 gi|263001697|gb|EEZ14272.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 163

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K + L +    +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKDKLLANGDHWERE 151


>gi|332296158|ref|YP_004438081.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179261|gb|AEE14950.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 676

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C    C+ +CP        Y  +    I P  C  CGVC   CP  AI
Sbjct: 604 VNPDKCSGC--GICLPLCPYSAISWKEYGDKKRAHIDPALCTGCGVCASACPSRAI 657


>gi|304410442|ref|ZP_07392060.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS183]
 gi|307304534|ref|ZP_07584284.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           BA175]
 gi|304350926|gb|EFM15326.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS183]
 gi|306911936|gb|EFN42360.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           BA175]
          Length = 490

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++ 
Sbjct: 290 CVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKPNLIGYMS 342

Query: 69  IN 70
            N
Sbjct: 343 EN 344


>gi|283852387|ref|ZP_06369657.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283572235|gb|EFC20225.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 253

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  CV VCPV    + E+   +      CI C  C   CP           +  
Sbjct: 76  PCQQCGNPPCVSVCPVIATDKNEDGGIVSQVYPRCIGCRYCVAACPYHVRYFGWYDPIWP 135


>gi|284032066|ref|YP_003381997.1| nitrate reductase subunit beta [Kribbella flavida DSM 17836]
 gi|283811359|gb|ADB33198.1| nitrate reductase, beta subunit [Kribbella flavida DSM 17836]
          Length = 584

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|154494980|ref|ZP_02033985.1| hypothetical protein PARMER_04026 [Parabacteroides merdae ATCC
           43184]
 gi|154085530|gb|EDN84575.1| hypothetical protein PARMER_04026 [Parabacteroides merdae ATCC
           43184]
          Length = 257

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ VT+ CI C    C  +CP               D C+ C  C   CPV AI+ 
Sbjct: 189 SFRVTDVCISC--GLCERICPTGTISMQAGKPV-WTDTCVQCVACIHRCPVRAIEY 241


>gi|153824794|ref|ZP_01977461.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2]
 gi|149741512|gb|EDM55542.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 40.7 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|149193850|ref|ZP_01870948.1| iron-sulfur cluster-binding protein CooF [Caminibacter
           mediatlanticus TB-2]
 gi|149135803|gb|EDM24281.1| iron-sulfur cluster-binding protein CooF [Caminibacter
           mediatlanticus TB-2]
          Length = 172

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C++  CVE CP+D      +++ I+ ++CI C  C   CP  A+     P   
Sbjct: 63  CMQCENAPCVEACPIDIIKYEGDYVKIYEEDCIGCRSCAIVCPFGAVVMAESPYDN 118


>gi|42525777|ref|NP_970875.1| iron-sulfur cluster-binding protein [Treponema denticola ATCC
           35405]
 gi|41815788|gb|AAS10756.1| iron-sulfur cluster-binding protein [Treponema denticola ATCC
           35405]
          Length = 303

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ ENC  CK   C+ VCP++ F   +  ++I +   CI CG C   C  +AI       
Sbjct: 212 IIRENCSACKK--CISVCPINNFIFTDGRVSIKNQKNCILCGECFYNCGCNAIDFAYRTV 269

Query: 63  LELWL---------KINSEYATQWPNITTKKESL 87
            +  L          I++ Y  ++  I  K + L
Sbjct: 270 AQKRLNDGNIVFEKDISAIYPKKYGYINNKGDQL 303


>gi|126173201|ref|YP_001049350.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125996406|gb|ABN60481.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 490

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++ 
Sbjct: 290 CVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKPNLIGYMS 342

Query: 69  IN 70
            N
Sbjct: 343 EN 344


>gi|332758577|gb|EGJ88898.1| respiratory nitrate reductase 2 beta chain domain protein [Shigella
           flexneri K-671]
          Length = 289

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP  
Sbjct: 177 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYK 230


>gi|313677766|ref|YP_004055762.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Marivirga tractuosa DSM 4126]
 gi|312944464|gb|ADR23654.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Marivirga tractuosa DSM 4126]
          Length = 1034

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C  VCPV         L  +  + C+    C   CP    + +     +   
Sbjct: 842 CQHCNNAPCETVCPVAATTHSTEGLNQMTYNRCVGTRYCANNCPYKVRRFNWFKYHD--- 898

Query: 68  KINSEYATQ 76
             N+++   
Sbjct: 899 --NTKFDKN 905


>gi|302872534|ref|YP_003841170.1| hypothetical protein COB47_1916 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575393|gb|ADL43184.1| protein of unknown function DUF362 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 375

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C   +C   CP            +   +CI C  C   CP  AI
Sbjct: 318 CIGC--AECFNACPAQAIEMRSRKAYVDLKKCIKCYCCHELCPAKAI 362


>gi|289192883|ref|YP_003458824.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
 gi|288939333|gb|ADC70088.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
          Length = 621

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C    C EVC V+           + + C+ CG C  ECP DA +   E
Sbjct: 491 VNEEKCNGC--GRCAEVCKVEAIDVRGEISYTNYNVCVGCGKCIKECPNDAREVKEE 545


>gi|317050799|ref|YP_004111915.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945883|gb|ADU65359.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurispirillum indicum S5]
          Length = 176

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 24/104 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGV 45
           Y + E CI C    CV+ CP+D      +                    +   ECI CG+
Sbjct: 68  YFIEEKCIACNM--CVKACPIDVIQLEFHREDREVDGKVKKVPVIDKYTVDIGECISCGL 125

Query: 46  CEPECPVDAIKPDTE-----PGLELWLKINSEYATQWPNITTKK 84
           C   CP DA+    E        EL++    E A  +P    KK
Sbjct: 126 CAEHCPTDAVFQSQEYETAYYYKELFVMNKDELAMTFPEYIEKK 169


>gi|253989599|ref|YP_003040955.1| electron transport complex protein RnfB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781049|emb|CAQ84211.1| 4Fe-4S ferredoxin, iron-sulphur binding [Photorhabdus asymbiotica]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  ENCI C  T C++ CPVD           +  D C  C +C   CP D I  
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVVEDLCTGCDLCVAPCPTDCIAM 164


>gi|225569293|ref|ZP_03778318.1| hypothetical protein CLOHYLEM_05375 [Clostridium hylemonae DSM
           15053]
 gi|225162092|gb|EEG74711.1| hypothetical protein CLOHYLEM_05375 [Clostridium hylemonae DSM
           15053]
          Length = 374

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C  +C  D     +    I   +C+ CG C   CP DA+ P
Sbjct: 194 EYCVGC--GACQRICAHDAPVITDGKAYIDLHKCVGCGRCIGACPKDAVHP 242


>gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
 gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
          Length = 626

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CP +      +    I    C+ CG C  +C   AI  +
Sbjct: 573 IDADKCKGC--TLCARTCPNNAIIGSVKEVHMIDQSRCVKCGACMEKCRFGAIYKE 626


>gi|71065390|ref|YP_264117.1| putative electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter arcticus 273-4]
 gi|71038375|gb|AAZ18683.1| putative electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter arcticus 273-4]
          Length = 280

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
             +  ++CI C  T C+  CPVD     G++   I  D C  C +C   CPVD I
Sbjct: 118 AVIREDDCIGC--TKCIPACPVDAIVGTGKHMHTIFTDLCTGCELCIAPCPVDCI 170


>gi|32266977|ref|NP_861009.1| hypothetical protein HH1478 [Helicobacter hepaticus ATCC 51449]
 gi|32263029|gb|AAP78075.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 345

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           V   C+ C    C ++CP     +  N    I  + C     C   CP 
Sbjct: 127 VPRRCMHCDDPTCQKLCPFGVISKDSNGAVKIDDEYCFGGAKCRDVCPW 175


>gi|146296780|ref|YP_001180551.1| aldo/keto reductase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410356|gb|ABP67360.1| aldo/keto reductase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 315

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C    CV  C        +  + +   +C+ CG C   C V AI
Sbjct: 264 VESWCEGC--GRCVNHCHQKALRVEDRKVVVDYTKCLCCGYCSRYCSVFAI 312


>gi|254226570|ref|ZP_04920152.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51]
 gi|125620906|gb|EAZ49258.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 39.2 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 420 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|332159501|ref|YP_004424780.1| putative ATPase RIL [Pyrococcus sp. NA2]
 gi|331034964|gb|AEC52776.1| putative ATPase RIL [Pyrococcus sp. NA2]
          Length = 589

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E  N   I    C  CG+C  +CP  AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNKPIIQEASCTGCGICVHKCPFKAI 66


>gi|308371790|ref|ZP_07667247.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu004]
 gi|308335377|gb|EFP24228.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu004]
          Length = 555

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEYA 74
          C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ Y 
Sbjct: 3  CIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINASYY 62

Query: 75 TQWP-----NITTKKESLPSAAKMD 94
           + P       T+K   +  AA++ 
Sbjct: 63 PKRPAGVKLAPTSKLAPVTPAAEVR 87



 Score = 35.3 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC 25
          M Y+    C+ C    CV  CPV  
Sbjct: 18 MLYIDPVACVDC--GACVTACPVSA 40


>gi|224368298|ref|YP_002602461.1| HdrA2 [Desulfobacterium autotrophicum HRM2]
 gi|223691014|gb|ACN14297.1| HdrA2 [Desulfobacterium autotrophicum HRM2]
          Length = 1017

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +  E C  C    C+ VCP +     +  +   ++   C  CG C   CP +A       
Sbjct: 946  INPERCAGC--GGCIAVCPYNAITMDKVNHVAVVNDALCKGCGACAATCPSEAPSLMGFN 1003

Query: 62   GLELWLKINSEYA 74
              +L+ +I S  A
Sbjct: 1004 NEQLYAQIKSAMA 1016



 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 25/80 (31%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECID-- 42
           YV T+ CI C    C E CP                  V           I P+ C+   
Sbjct: 109 YVDTDKCIAC--GLCAEKCPKKVDDEYNEGLGKRKAIYVSYSQAVPLKYTIDPENCLYLT 166

Query: 43  ---CGVCEPECPVDAIKPDT 59
              CG CE  CP  AI    
Sbjct: 167 KGKCGNCEKVCPSHAINYLD 186


>gi|206889435|ref|YP_002249380.1| electron transfer flavoprotein alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206889764|ref|YP_002249430.1| electron transfer flavoprotein alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206741373|gb|ACI20430.1| electron transfer flavoprotein alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206741702|gb|ACI20759.1| electron transfer flavoprotein alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
          Length = 393

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          E C  C    CV VCP       E+   I  + C  CG C   C   AI    +  +E 
Sbjct: 8  EKCTGC--ATCVNVCPFGAIIIKEDKAFI-TESCTLCGACVESCSEGAIIDARDKEVEK 63


>gi|188493744|ref|ZP_03001014.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
 gi|188488943|gb|EDU64046.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|308231662|ref|ZP_07663905.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu001]
 gi|308370526|ref|ZP_07666957.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu003]
 gi|308374124|ref|ZP_07667719.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu006]
 gi|308375281|ref|ZP_07667984.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu007]
 gi|308376537|ref|ZP_07668296.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu008]
 gi|308377537|ref|ZP_07668536.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu009]
 gi|308378749|ref|ZP_07668818.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu010]
 gi|308379895|ref|ZP_07669070.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu011]
 gi|308397494|ref|ZP_07492520.2| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu012]
 gi|308216365|gb|EFO75764.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu001]
 gi|308331656|gb|EFP20507.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu003]
 gi|308342918|gb|EFP31769.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu006]
 gi|308346746|gb|EFP35597.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu007]
 gi|308350660|gb|EFP39511.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu008]
 gi|308355320|gb|EFP44171.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu009]
 gi|308359259|gb|EFP48110.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu010]
 gi|308363169|gb|EFP52020.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu011]
 gi|308366823|gb|EFP55674.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu012]
          Length = 555

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEYA 74
          C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ Y 
Sbjct: 3  CIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINASYY 62

Query: 75 TQWP-----NITTKKESLPSAAKMD 94
           + P       T+K   +  AA++ 
Sbjct: 63 PKRPAGVKLAPTSKLAPVTPAAEVR 87



 Score = 35.3 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC 25
          M Y+    C+ C    CV  CPV  
Sbjct: 18 MLYIDPVACVDC--GACVTACPVSA 40


>gi|328948941|ref|YP_004366278.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema succinifaciens DSM 2489]
 gi|328449265|gb|AEB14981.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema succinifaciens DSM 2489]
          Length = 373

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C+   C + C  D          I+ + C  CG C   C  DAI     P  
Sbjct: 193 VNQEACKGCRL--CSKECGSDAITYENKKAFINQELCKGCGRCIGACNFDAIYN---PNW 247

Query: 64  ELWLKINSEYATQWPNI 80
                ++ + A     +
Sbjct: 248 NANEDLDCKMAEYTQAV 264


>gi|320101917|ref|YP_004177508.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
          ATCC 43644]
 gi|319749199|gb|ADV60959.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
          ATCC 43644]
          Length = 257

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 4  VVTENC-ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          V    C   C    C E CP +          I   +C+ C  C   CP +AI  
Sbjct: 35 VDASRCPSGC--QACAEACPTNAIRLDPAGPVIDLGKCLFCTECTTACPQEAIAY 87


>gi|302184712|ref|ZP_07261385.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae 642]
          Length = 291

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCIAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|296100564|ref|YP_003610710.1| putative hydrogenase, 4Fe-4S ferredoxin-type component
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055023|gb|ADF59761.1| putative hydrogenase, 4Fe-4S ferredoxin-type component
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 151

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   C  VCP      GE    +    CI C  C   CP  A++   
Sbjct: 53  CHQCEDAPCANVCPTQAIRRGEGAWQVEQARCIGCKRCMVACPFGAMQVQW 103


>gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
 gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
          Length = 641

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           Y+  E C  C    C   CP D    G+     I  D+CI CG C   CP
Sbjct: 564 YIDPEKCKAC--MICARNCPTDAIKGGKGLIHTIEQDKCIKCGACLDTCP 611


>gi|255523131|ref|ZP_05390103.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|255513246|gb|EET89514.1| nitroreductase [Clostridium carboxidivorans P7]
          Length = 266

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 5  VTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          V E+ C+ C    C +VCP    Y  E+    + + CI CG C   CP  A+     P
Sbjct: 6  VNESLCVKC--GACTKVCPTTALYMKEDGPKNNNNSCIACGQCAAVCPCGALDNVKTP 61


>gi|242399275|ref|YP_002994699.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1N (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
 gi|242265668|gb|ACS90350.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1N (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
          Length = 189

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ E C  C  T C   CP +        +  I+P++CI CG+C   C   AI+   E
Sbjct: 134 IIAEKCKGC--TLCARNCPQNAIEGAPRVVHKINPEKCIGCGICATICKFSAIEEYEE 189



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CI CK   C+ VCP   F        + +    C+ C  C   CPV+A++   E
Sbjct: 44 DKCIGCKL--CMNVCPAGVFEYVPEIKKVTLWLGRCVFCQQCVDVCPVNALEMSGE 97


>gi|255099820|ref|ZP_05328797.1| putative reductase [Clostridium difficile QCD-63q42]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGC--GMCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 IEYNRESFELEP 75


>gi|154151379|ref|YP_001404997.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153999931|gb|ABS56354.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           Y+    C  C   DC+EVCPV+ +   +  +                      + CI+CG
Sbjct: 93  YIDMVACTGC--GDCIEVCPVEVYNRFDAGVGVRKAIYKPHPQVVPDRVVKDNEHCIECG 150

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   C   AI  +     
Sbjct: 151 LCYDSCGPQAILREDTEKE 169


>gi|56414804|ref|YP_151879.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363732|ref|YP_002143369.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|56129061|gb|AAV78567.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095209|emb|CAR60760.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
          Length = 202

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|90422688|ref|YP_531058.1| glycyl-radical activating protein [Rhodopseudomonas palustris
           BisB18]
 gi|90104702|gb|ABD86739.1| Glycyl-radical enzyme activating [Rhodopseudomonas palustris
           BisB18]
          Length = 306

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           NC+ C    C EVCP            I   +CI CG C   C   A+  
Sbjct: 60  NCVKC--GKCKEVCPTGAISPENP-AFIDRSKCISCGTCANVCAYGALTM 106


>gi|116622139|ref|YP_824295.1| formate dehydrogenase subunit beta [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225301|gb|ABJ84010.1| formate dehydrogenase beta subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 286

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C    C+E CP       E   + + PD C  CG C   CP   I    + 
Sbjct: 102 SDVCKHCARAGCLESCPTGAIIRTEFDSVYVQPDICNGCGYCVINCPFGVIDRSPDD 158


>gi|303248978|ref|ZP_07335224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489627|gb|EFL49565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 256

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  CV VCPV    + E+   +      CI C  C   CP           +  
Sbjct: 76  PCQQCGNPPCVSVCPVVATDKNEDGGIVSQIYPRCIGCRYCVAACPYHVRYFGWYDPIWP 135


>gi|291542332|emb|CBL15442.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus bromii L2-63]
          Length = 286

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    CV+ C        +  +++   +C  CG C   CP DA
Sbjct: 162 EDACIGC--GVCVKACRQGAITLEDGKISVDNSKCNYCGRCFKACPTDA 208


>gi|212224715|ref|YP_002307951.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
 gi|212009672|gb|ACJ17054.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
          Length = 166

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPD 58
          NC  C+   CVEVCP +  Y  ++   +  P +CI C +C   CP    + D
Sbjct: 47 NCRHCEKAPCVEVCPTNALYRDKDGAVLLAPQKCIGCLMCGIVCPFGIPELD 98


>gi|160943357|ref|ZP_02090592.1| hypothetical protein FAEPRAM212_00843 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445383|gb|EDP22386.1| hypothetical protein FAEPRAM212_00843 [Faecalibacterium prausnitzii
           M21/2]
          Length = 255

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  T+ CI C    CVE+CP++               C  C  C   C  +AI+ 
Sbjct: 182 AFRATDACIGC--GKCVELCPLNNIRLENGRPV-WGKNCTHCMACICYCHKEAIEY 234


>gi|30064072|ref|NP_838243.1| electron transport protein HydN [Shigella flexneri 2a str. 2457T]
 gi|56480169|ref|NP_708520.2| electron transport protein HydN [Shigella flexneri 2a str. 301]
 gi|30042328|gb|AAP18053.1| 4Fe-4S iron-sulfur protein [Shigella flexneri 2a str. 2457T]
 gi|56383720|gb|AAN44227.2| 4Fe-4S iron-sulfur protein [Shigella flexneri 2a str. 301]
 gi|281602082|gb|ADA75066.1| 4Fe-4S iron-sulfur protein [Shigella flexneri 2002017]
 gi|313648193|gb|EFS12638.1| hydrogenase-4 component A [Shigella flexneri 2a str. 2457T]
 gi|332753430|gb|EGJ83810.1| hydrogenase-4 component A [Shigella flexneri 4343-70]
 gi|332753940|gb|EGJ84315.1| hydrogenase-4 component A [Shigella flexneri K-671]
 gi|332755674|gb|EGJ86037.1| hydrogenase-4 component A [Shigella flexneri 2747-71]
 gi|332765664|gb|EGJ95877.1| putative electron transport protein HydN [Shigella flexneri
           2930-71]
 gi|333000620|gb|EGK20197.1| hydrogenase-4 component A [Shigella flexneri K-218]
 gi|333015799|gb|EGK35135.1| hydrogenase-4 component A [Shigella flexneri K-304]
          Length = 175

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVPVMQERCIGCKTCVVACPYGAM 104


>gi|116619325|ref|YP_821481.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116222487|gb|ABJ81196.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 507

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPV 52
           C  C    C+  CPV+ + +      +    D CI C  C   C  
Sbjct: 95  CNHCIEPSCMTGCPVEAYTKNAITGVVEHSADACIGCQYCTWNCSY 140


>gi|330889574|gb|EGH22235.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 290

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|312144098|ref|YP_003995544.1| sigma54 specific transcriptional regulator [Halanaerobium sp.
          'sapolanicus']
 gi|311904749|gb|ADQ15190.1| putative sigma54 specific transcriptional regulator
          [Halanaerobium sp. 'sapolanicus']
          Length = 847

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          ++ E C  C    CV  CPV      E  + +  + CI CG C   C  +A +  +E
Sbjct: 5  ILKEYCHECY--ACVRNCPVSAVKVNEGKVEVIEERCIHCGKCVNLCSQNAREIISE 59


>gi|312880734|ref|ZP_07740534.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784025|gb|EFQ24423.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 271

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+ CP D  +   N   I PD+C  C +C  +CP  AI
Sbjct: 218 CIGC--GLCVKACPNDAVHVENNLARIDPDKCTQCCLCVDKCPTKAI 262



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C     CV VCP D  +   +   +   +C+ CG C   CP   I
Sbjct: 143 GCLGLGTCVAVCPFDAIHIENSVARVDEAKCVGCGACVTLCPKGLI 188


>gi|308272002|emb|CBX28610.1| hypothetical protein N47_G39340 [uncultured Desulfobacterium sp.]
          Length = 1018

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVDAIK 56
            V+   C  C    CV +CP       E           I+P  C  CG+C   C   AI+
Sbjct: 945  VIPAACSSC--GVCVSICPYSAPSFIEETARFFPGKANINPALCKGCGLCVASCRSGAIR 1002

Query: 57   PDTEPGLELWLKI 69
                   +++ +I
Sbjct: 1003 LKGFDNDQIFAQI 1015



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 27/85 (31%), Gaps = 25/85 (29%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECID-- 42
           YV    CI C    C E CP                  V          AI PD C+   
Sbjct: 111 YVDMNKCIAC--GLCAEKCPKKVINEYDGSLSKRKAIYVKYAQAVPLKYAIDPDNCLFLT 168

Query: 43  ---CGVCEPECPVDAIKPDTEPGLE 64
              C  CE  CP DAI  D +P   
Sbjct: 169 KGKCRACEKFCPADAINFDDQPKDM 193


>gi|299483514|gb|ADJ19595.1| putative Fe-S-cluster-containing hydrogenase component [Treponema
           primitia ZAS-2]
          Length = 172

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C   C     Y  +N + +   +CI C  C   CP  A++      ++ 
Sbjct: 59  CRHCENPACKASCTSGAIYVRDNVVLVDTKKCIGCKNCVIACPFGAVEIVETAEVQH 115


>gi|296109958|ref|YP_003616907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295434772|gb|ADG13943.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 151

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          YV+ + C+LC    C EVCP +C ++GE  + I+ ++C+ CG C   CP  AI
Sbjct: 16 YVIKDRCVLCNL--CKEVCPANCIFDGEESVEINKEKCMFCGRCVKVCPTKAI 66


>gi|224540942|ref|ZP_03681481.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526175|gb|EEF95280.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
           15897]
          Length = 306

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            E C+ C    CV  CP       +  + I    C  C  C   CP  A+  + E
Sbjct: 60  NEKCLHC--ATCVHTCPKGAIKMEDGLIRIDHKTCDHCMECVKACPGKALTQEGE 112


>gi|66047114|ref|YP_236955.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257821|gb|AAY38917.1| Electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae B728a]
          Length = 291

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  +EC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIINECTGCDLCIAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|303247146|ref|ZP_07333421.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ]
 gi|302491572|gb|EFL51457.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ]
          Length = 442

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG------------------ENFLAIHPDECIDCG 44
           YV  + CI C+   C   CPV                             +   +C+ CG
Sbjct: 105 YVDMDKCIGCRK--CEYACPVVVPDVEQGGFSGRKAIRIPFSNAIPQKAVLDVTQCMLCG 162

Query: 45  VCEPECPVDAIKPDTEPG 62
            C   CP  AI  D +P 
Sbjct: 163 KCASVCPTGAIVYDQQPE 180


>gi|238756491|ref|ZP_04617796.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC
           29473]
 gi|238705278|gb|EEP97690.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC
           29473]
          Length = 207

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+    
Sbjct: 110 AFIDESNCIGC--TKCIQACPVDAIIGATRAMHTVLPDLCTGCDLCVDPCPTDCIEMIPV 167

Query: 61  PG 62
           P 
Sbjct: 168 PM 169


>gi|256826661|ref|YP_003150620.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582804|gb|ACU93938.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 252

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           +C  C    CV+ CPV             +   +CI CG+C   CP + 
Sbjct: 146 SCKQCAEAQCVKNCPVHAIGADPKTGARVVDEKKCIGCGMCHEACPWNM 194



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPG 62
           V  + CI C    C E CP +        L     +CI CG C  +CP  AI   D +  
Sbjct: 175 VDEKKCIGC--GMCHEACPWNMPQVSS--LTGASTKCISCGRCAEQCPNGAILFIDWQDI 230

Query: 63  LELWLK 68
            +  + 
Sbjct: 231 ADEAIA 236


>gi|218961542|ref|YP_001741317.1| putative ferredoxin, 4Fe-4S; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730199|emb|CAO81111.1| putative ferredoxin, 4Fe-4S; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 184

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC 46
           V  + CI CK   C+  CP            I   +C  CG+C
Sbjct: 123 VNKDLCIGCKL--CIRYCPEGAISIKNGKAVIDTTKCTACGIC 163


>gi|167625926|ref|YP_001676220.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355948|gb|ABZ78561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 182

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           +C+ C +  C+ VCP   +   ++ L +   D+C  CG+C   CP DA+  
Sbjct: 60  SCMHCGNPGCLMVCPSQAYSVRDDGLVVLDRDKCTGCGLCVNACPYDAVVM 110


>gi|157155252|ref|YP_001464036.1| formate hydrogenlyase, subunit B [Escherichia coli E24377A]
 gi|157077282|gb|ABV16990.1| formate hydrogenlyase, subunit B [Escherichia coli E24377A]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|153214796|ref|ZP_01949625.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587]
 gi|124115138|gb|EAY33958.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGTDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 420 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|333029771|ref|ZP_08457832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides coprosuis DSM 18011]
 gi|332740368|gb|EGJ70850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides coprosuis DSM 18011]
          Length = 56

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG+   +I  D C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIAC--GTCIDECPVEAISEGD-IYSIDADICTDCGTCADVCPSEAIHP 54


>gi|295093270|emb|CBK82361.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Coprococcus sp. ART55/1]
          Length = 580

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 5   VTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + E C  C    C++  CP     + +  + I    C  CG+C   C  DAI+ + 
Sbjct: 527 IPEKCKKC--GMCLKPGCPA-VIRQEDGTIRIDDTLCTGCGLCMKRCKFDAIEREE 579


>gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
          Length = 601

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           T+V+  + C  C    C + C VD           I  ++C+ CG C   C  DA+
Sbjct: 545 TFVIDEDKCKGCD--ICKKNCAVDAITGDVKKPHVIDDEKCVRCGNCMNMCKFDAV 598


>gi|170683893|ref|YP_001745861.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli SMS-3-5]
 gi|170521611|gb|ACB19789.1| 4Fe-4S binding domain protein [Escherichia coli SMS-3-5]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
 gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
          Length = 596

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           M++V+    C  C    C  +CP             I    CI CG C  +C   AI
Sbjct: 539 MSFVIDPKVCKGCSL--CARMCPPGAISGIPKQPYAIDQARCIKCGTCLEKCKFGAI 593


>gi|222479761|ref|YP_002565998.1| DMSO reductase family type II enzyme, iron-sulfur subunit
           [Halorubrum lacusprofundi ATCC 49239]
 gi|222452663|gb|ACM56928.1| DMSO reductase family type II enzyme, iron-sulfur subunit
           [Halorubrum lacusprofundi ATCC 49239]
          Length = 373

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C H  CVE CP    Y+ E    + +  D C     C   CP   +  
Sbjct: 168 CNHCTHPSCVEACPRSAIYKREEDGIVLVDQDRCRGYRYCVEGCPYKKVFY 218


>gi|172061288|ref|YP_001808940.1| ferredoxin [Burkholderia ambifaria MC40-6]
 gi|171993805|gb|ACB64724.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           ambifaria MC40-6]
          Length = 341

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +    I    C  C +C P CPVD I  
Sbjct: 112 AFIDESLCIGC--TLCMQACPVDAIVGAPKQMHTIVESLCTGCDLCVPPCPVDCIAM 166


>gi|116251475|ref|YP_767313.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241204096|ref|YP_002975192.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115502540|sp|Q1MIK6|NUOI_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115256123|emb|CAK07204.1| putative NADH-quinone oxidoreductase subunit I [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240857986|gb|ACS55653.1| NADH-quinone oxidoreductase, chain I [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 163

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K   L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YFDKARLLDNGDRWERE 151


>gi|325288372|ref|YP_004264553.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963773|gb|ADY54552.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 574

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            VT +C+ C    C+++ CP  C  +    + I+  +C+ CG+C+  C   AIK +
Sbjct: 520 FVTSDCVGC--MQCLKLGCP--CIVKENKRVVINSTQCVGCGLCQTVCTRHAIKKE 571


>gi|313905900|ref|ZP_07839256.1| nitrite and sulphite reductase 4Fe-4S region [Eubacterium
           cellulosolvens 6]
 gi|313469241|gb|EFR64587.1| nitrite and sulphite reductase 4Fe-4S region [Eubacterium
           cellulosolvens 6]
          Length = 288

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    C +VC  +     +  + +  D+C +CG C   CP DA
Sbjct: 162 EDKCINC--GLCAKVCRENAVSITDGKVTVDQDKCNNCGRCVFSCPTDA 208


>gi|294643470|ref|ZP_06721283.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294807914|ref|ZP_06766695.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292641189|gb|EFF59394.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294444912|gb|EFG13598.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 278

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP     +G+        +CI C  C   C   A   DT 
Sbjct: 211 CTHC--GLCVVRCPAGAITKGDELHT-DEAKCIKCCACVKACVKKARVYDTP 259


>gi|284040499|ref|YP_003390429.1| iron-sulfur binding oxidoreductase [Spirosoma linguale DSM 74]
 gi|283819792|gb|ADB41630.1| putative iron-sulfur binding oxidoreductase [Spirosoma linguale DSM
           74]
          Length = 1037

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT---EPGLE 64
           C  C +  C  VCPV         L  +  + C+    C   CP    + +         
Sbjct: 848 CQHCSNAPCETVCPVLATTHSTEGLNQMTYNRCVGTRYCANNCPYKVRRFNWFKYHDNDN 907

Query: 65  LWLKINSEYATQ--WPNITTK 83
                N++       P++T +
Sbjct: 908 YDYHFNNDLGKMVINPDVTVR 928


>gi|255305705|ref|ZP_05349877.1| putative reductase [Clostridium difficile ATCC 43255]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGC--GMCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 IEYNRESFELEP 75


>gi|239623279|ref|ZP_04666310.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522245|gb|EEQ62111.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 9   CILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C  VCPV          G+    +  D C+ CGVC   C V AI
Sbjct: 295 CVGC--GKCARVCPVLAISMKEDGNGKRIPVLDRDICLGCGVCARNCSVKAI 344


>gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 623

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CP      E      I   +C+ C +C   C  +AI
Sbjct: 569 YEITDKCIGC--TVCAVKCPAKAISGERRQKHKIAIVKCVKCDICIKSCKFNAI 620


>gi|170761054|ref|YP_001787600.1| iron-sulfur binding protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408043|gb|ACA56454.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 277

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +    C+ C    CV VC  + F + ++ + +    C  CG C+  C  +AI  D
Sbjct: 61  IDDNKCVNC--GACVNVCQFNAFAKIKDGIMLFQKLCHGCGACKIACKYNAITYD 113


>gi|297584471|ref|YP_003700251.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142928|gb|ADH99685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 337

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           V   C+ C    C ++CP    Y+ E+    I  D C+    C   CP D
Sbjct: 124 VPRRCMHCDDATCQKLCPFGVIYKSEHGAVHIDQDFCMGGAKCRSACPWD 173


>gi|153810606|ref|ZP_01963274.1| hypothetical protein RUMOBE_00987 [Ruminococcus obeum ATCC 29174]
 gi|149833785|gb|EDM88866.1| hypothetical protein RUMOBE_00987 [Ruminococcus obeum ATCC 29174]
 gi|295108222|emb|CBL22175.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus obeum A2-162]
          Length = 57

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+++ C+ C    C   CP +   EG     I  D C+DCG C   CP +AI P
Sbjct: 1  MAYVISDECVSC--GTCAAECPAEAISEGAEHFEIDADACLDCGTCADACPTEAIHP 55


>gi|254974321|ref|ZP_05270793.1| putative reductase [Clostridium difficile QCD-66c26]
 gi|255091717|ref|ZP_05321195.1| putative reductase [Clostridium difficile CIP 107932]
 gi|255313445|ref|ZP_05355028.1| putative reductase [Clostridium difficile QCD-76w55]
 gi|255516133|ref|ZP_05383809.1| putative reductase [Clostridium difficile QCD-97b34]
 gi|255649229|ref|ZP_05396131.1| putative reductase [Clostridium difficile QCD-37x79]
 gi|260682403|ref|YP_003213688.1| putative reductase [Clostridium difficile CD196]
 gi|260686002|ref|YP_003217135.1| putative reductase [Clostridium difficile R20291]
 gi|306519331|ref|ZP_07405678.1| putative reductase [Clostridium difficile QCD-32g58]
 gi|260208566|emb|CBA61245.1| putative reductase [Clostridium difficile CD196]
 gi|260212018|emb|CBE02566.1| putative reductase [Clostridium difficile R20291]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGC--GMCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 IEYNRESFELEP 75


>gi|24372077|ref|NP_716119.1| formate-dependent nitrite reductase, nrfC protein [Shewanella
           oneidensis MR-1]
 gi|24345958|gb|AAN53564.1|AE015496_8 formate-dependent nitrite reductase, nrfC protein [Shewanella
           oneidensis MR-1]
          Length = 235

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           +C  CK+  CV VCP    +       + +   +C  C  C   CP +A
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNA 153


>gi|42523112|ref|NP_968492.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Bdellovibrio bacteriovorus HD100]
 gi|39575317|emb|CAE79485.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Bdellovibrio bacteriovorus HD100]
          Length = 1033

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C  VCPV    +  E    +  + C+    C   CP    + + 
Sbjct: 849 CQHCDNAPCETVCPVLATVHSDEGLNDMVYNRCVGTRYCANNCPYKVRRFNW 900


>gi|148266249|ref|YP_001232955.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
 gi|146399749|gb|ABQ28382.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
          Length = 593

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           VV + C+ C    C++ CP +     +  +  +  ++C  C  C   C   AI
Sbjct: 542 VVEDKCVKC--GACLKACPSNAIIWEKGKVAYLDKEKCTKCKSCYDACRFMAI 592


>gi|307243643|ref|ZP_07525786.1| ferredoxin [Peptostreptococcus stomatis DSM 17678]
 gi|306493012|gb|EFM65022.1| ferredoxin [Peptostreptococcus stomatis DSM 17678]
          Length = 55

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV C  EG+    I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIKDSCIAC--GACAAECPVSCISEGD-IYTIDASACIDCGSCAGVCPVDAPQPE 55


>gi|257792587|ref|YP_003183193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488875|ref|ZP_07947405.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832779|ref|ZP_08165542.1| electron transport protein HydN [Eggerthella sp. HGA1]
 gi|257476484|gb|ACV56804.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911949|gb|EFV33528.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485918|gb|EGC88379.1| electron transport protein HydN [Eggerthella sp. HGA1]
          Length = 208

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C+ VCP     +  + L +    C  C +C   CP  A+ P   
Sbjct: 51  CHQCEGAPCMTVCPEGAIVQERDRLHVDESRCTGCLLCALVCPFGAVYPSAP 102


>gi|222054720|ref|YP_002537082.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
 gi|221564009|gb|ACM19981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
          Length = 55

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +++ CI C    C E CPV+   E  +   I  D CIDCG C   CPV AI
Sbjct: 1  MAHKISDECINC--GACDESCPVNAISEEGSKRTISADTCIDCGACVDTCPVSAI 53


>gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
          Length = 618

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           +V   C  C    C   CP D     +     +  D+CI CG+C   C  +AI
Sbjct: 565 IVDGTCTGC--GLCARKCPQDAITGAKKETHVLDQDKCIKCGICYDACKFNAI 615


>gi|124005224|ref|ZP_01690066.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Microscilla marina ATCC 23134]
 gi|123989476|gb|EAY29037.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Microscilla marina ATCC 23134]
          Length = 1124

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL-- 65
           C  C +  C  VCPV         L  +  + C     C   CP    + +     +   
Sbjct: 879 CQHCNNAPCETVCPVLATTHSTEGLNQMAYNRCFGTRYCANNCPYKVRRFNWFNYFDDKR 938

Query: 66  WLKIN 70
           + ++N
Sbjct: 939 FTEVN 943


>gi|52548568|gb|AAU82417.1| archaeal flavoproteins [uncultured archaeon GZfos17C7]
 gi|52549777|gb|AAU83626.1| archaeal flavoprotein [uncultured archaeon GZfos32E4]
 gi|52550226|gb|AAU84075.1| archaeal flavoproteins [uncultured archaeon GZfos36D8]
          Length = 267

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M Y +  + C  C   +  + C  D  Y G     I    C  CG+C   CP  AI    
Sbjct: 153 MPYSIDRDKCRGCDDCEPRDSCERDAIY-GAPIPQIDLLRCDGCGLCSELCPYGAINGGV 211

Query: 60  EPGLELWLKI 69
                  + I
Sbjct: 212 VEIKAREIDI 221


>gi|89897457|ref|YP_520944.1| putative hydrogenase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336905|dbj|BAE86500.1| putative hydrogenase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 261

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 16/125 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C  C+   C   C      +      I     C+ C  C   CP D ++ + +  +
Sbjct: 77  VKTQCFHCEEPACASACFSKAIQKLPEGPVIYDQSLCVGCRYCMMACPFDMLRYEWKKAV 136

Query: 64  ---------ELWLKINSE--YATQWP----NITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                       +  N E   ++  P        + E L  A K    K   +K F    
Sbjct: 137 PGIRKCQMCPTRVANNMEPACSSVCPTGALTFGERDELLAEAKKRIQEKGYIDKIFGEKE 196

Query: 109 GGKNT 113
            G  +
Sbjct: 197 AGGTS 201


>gi|119992|sp|P00197|FER_CLOSM RecName: Full=Ferredoxin
 gi|65699|pir||FECLCE ferredoxin 2[4Fe-4S] - Clostridium sp
          Length = 55

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C    C   CPV+   E +    I  D+CIDCG C   CPVDAI
Sbjct: 1  AYKITDGCINC--GACEPECPVEAISESDAVRVIDADKCIDCGACANTCPVDAI 52


>gi|219670622|ref|YP_002461057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540882|gb|ACL22621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 258

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 16/125 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C  C+   C   C      +      I     C+ C  C   CP D ++ + +  +
Sbjct: 74  VKTQCFHCEEPACASACFSKAIQKLPEGPVIYDQSLCVGCRYCMMACPFDMLRYEWKKAV 133

Query: 64  ---------ELWLKINSE--YATQWP----NITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                       +  N E   ++  P        + E L  A K    K   +K F    
Sbjct: 134 PGIRKCQMCPTRVANNMEPACSSVCPTGALTFGERDELLAEAKKRIQEKGYIDKIFGEKE 193

Query: 109 GGKNT 113
            G  +
Sbjct: 194 AGGTS 198


>gi|323189383|gb|EFZ74665.1| iron-sulfur protein [Escherichia coli RN587/1]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|313157190|gb|EFR56620.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 302

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C    CV +CP      G+      P  CI C  C   C   A   +T        
Sbjct: 234 RCTQC--GRCVALCPTQAIARGDELHT-DPARCIRCCACVKGCAFGARTFETP----FAA 286

Query: 68  KINSEYATQWPNIT 81
            ++  +A + P +T
Sbjct: 287 VLSRNFARRKPPVT 300


>gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 625

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           C  C    C  VCPV            I+PD+CI CG C   CP  A+
Sbjct: 576 CKGCSK--CSRVCPVGAISGEIKKPFTINPDKCIKCGACVEACPFKAV 621



 Score = 34.6 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGE 30
            + +  + CI C    CVE CP     EG+
Sbjct: 598 PFTINPDKCIKC--GACVEACPFKAVKEGK 625


>gi|257064390|ref|YP_003144062.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792043|gb|ACV22713.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 450

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C  VC      + E  + + PD+CI CG C   CP   ++        ++ ++
Sbjct: 31 RCASVCTTGAISKSEAGVTVDPDKCIGCGTCATACPSCCLEAMNPSDETMFFQM 84



 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + T+ C  C+   C   CP               +      C+ C +CE  CP  AI   
Sbjct: 310 IDTDICRSCRM--CTVFCPTGAISRFDTKDDAFGVEHRSALCMQCRLCETICPEHAITVS 367

Query: 59  TEPGLELWLKINSEYATQWP 78
               L+ ++          P
Sbjct: 368 DTVSLDEFVSGAKIRFEMNP 387


>gi|212704668|ref|ZP_03312796.1| hypothetical protein DESPIG_02731 [Desulfovibrio piger ATCC 29098]
 gi|212671902|gb|EEB32385.1| hypothetical protein DESPIG_02731 [Desulfovibrio piger ATCC 29098]
          Length = 653

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C+ C    C+  CP     E    GE    +    C  CGVC   CP  AI+   
Sbjct: 580 VDNKRCVAC--GKCIRCCPFGAITEVEFRGEKKAQVIETVCQGCGVCTSTCPQGAIQLSH 637

Query: 60  EPGLELWLKINS 71
               ++  ++N+
Sbjct: 638 ATDNQILAEVNA 649



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECID 42
           TYV    C  C    C E CP                               I+P+ C  
Sbjct: 235 TYVDWSLCTGC--GACTEKCPSKKTPDAFNEFTGPTTAINIAFPQAIPKKAVINPEYCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AIK D +  
Sbjct: 293 MTKGKCGVCAKVCPTGAIKYDMQDE 317


>gi|220910573|ref|YP_002485884.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219867184|gb|ACL47523.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 543

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC 43
          M Y ++++C+ C    C   CP       +   +I P+ C +C
Sbjct: 1  MAYKISDSCLACD--SCRPQCPTGAITVEDGRYSIDPETCNNC 41


>gi|153801160|ref|ZP_01955746.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3]
 gi|124123280|gb|EAY42023.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 420 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|110834208|ref|YP_693067.1| iron-sulfur cluster-binding protein [Alcanivorax borkumensis SK2]
 gi|110647319|emb|CAL16795.1| iron-sulfur cluster-binding protein [Alcanivorax borkumensis SK2]
          Length = 470

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VV E   CI C    CV+VCP                ECI C  C   C          P
Sbjct: 262 VVDEKGDCIDC--GMCVQVCPTGIDIRDGLQY-----ECITCAACVDACDDVMEHIGKPP 314

Query: 62  GLELWLKINS 71
           GL  +   N+
Sbjct: 315 GLIRYTTENA 324


>gi|90417027|ref|ZP_01224956.1| electron transport complex protein RnfB [marine gamma
           proteobacterium HTCC2207]
 gi|90331374|gb|EAS46618.1| electron transport complex protein RnfB [marine gamma
           proteobacterium HTCC2207]
          Length = 209

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 115 AYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIADECTGCDLCVEPCPVDCIDM 169



 Score = 33.8 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           M  V+ + C  C    CVE CPVDC         I   +
Sbjct: 144 MHTVIADECTGCDL--CVEPCPVDCIDMLPVAETIADWK 180


>gi|90411251|ref|ZP_01219263.1| TtrB [Photobacterium profundum 3TCK]
 gi|90327780|gb|EAS44111.1| TtrB [Photobacterium profundum 3TCK]
          Length = 237

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C +VCP    ++   +  + +    CIDC  C   CP D ++ 
Sbjct: 94  CNQCDNPVCTKVCPTGATFKRKEDGIVVVDSTGCIDCNFCVYTCPYDGVRF 144


>gi|229514922|ref|ZP_04404382.1| iron-sulfur cluster-binding protein [Vibrio cholerae TMA 21]
 gi|229347627|gb|EEO12586.1| iron-sulfur cluster-binding protein [Vibrio cholerae TMA 21]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPAD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 37.3 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVD 53
           C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 420 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQ 464


>gi|256827540|ref|YP_003151499.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256583683|gb|ACU94817.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 299

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +C+ C    CV VCP    Y   +    +    D+CI C  C   CP D  +      + 
Sbjct: 80  SCMHCTDAACVNVCPSGSLYHDPDGTGLVIYDVDKCIGCQYCRSACPFDVPRHTGIGVVG 139

Query: 65  LWLKINS 71
             +KIN 
Sbjct: 140 GGIKINK 146


>gi|227824996|ref|ZP_03989828.1| FeS cluster-binding protein [Acidaminococcus sp. D21]
 gi|226905495|gb|EEH91413.1| FeS cluster-binding protein [Acidaminococcus sp. D21]
          Length = 281

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 4/67 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C  VCP+    +        P  CI C  C   C   A     +  L   
Sbjct: 208 EKCDHC--GKCAAVCPMGAINKDNTDEV--PGTCIKCQACIVYCHTHAKFFHDDRFLSHK 263

Query: 67  LKINSEY 73
             +   Y
Sbjct: 264 AMLEKNY 270


>gi|206890111|ref|YP_002249095.1| iron-sulfur protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742049|gb|ACI21106.1| iron-sulfur protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 322

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
              V + C+ C    C   C VD F + E    + +P  C+ C  C   CP D    +  
Sbjct: 126 PVYVKKQCMHCIDAACQSACFVDAFKKTEQGAVLYNPSLCVGCRYCMIACPFDIPAYEYY 185

Query: 61  PG 62
             
Sbjct: 186 DP 187


>gi|150402896|ref|YP_001330190.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033926|gb|ABR66039.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 658

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV  + C  C    C   CP++   E +                      I  D CIDCG
Sbjct: 240 YVDEDTCTGC--GACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKDHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C  +A++ D +P    
Sbjct: 298 LCAKVCCAEAVRYDQKPQELK 318



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAI---HPDECIDCGVCEPECPVDAIK 56
             V  E C  CK   C  +CP +   YE ++   +       C  CG C   CP  A++
Sbjct: 577 ATVNEEVCGGCK--VCALMCPYNAITYEEKDGHLVAISDDVACKGCGACAAACPSGAMQ 633


>gi|126700932|ref|YP_001089829.1| electron transport protein [Clostridium difficile 630]
 gi|115252369|emb|CAJ70210.1| putative oxidoreductase, Fe-S subunit [Clostridium difficile]
          Length = 171

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C + CP        N + I+ + CI C  C   CP+ AI
Sbjct: 59  CRHCEDAPCAKACPNGGIVRVGNTIKINEENCIGCKTCMLACPIGAI 105


>gi|15641524|ref|NP_231156.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587222|ref|ZP_01676996.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80]
 gi|153818533|ref|ZP_01971200.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457]
 gi|153822815|ref|ZP_01975482.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|227081674|ref|YP_002810225.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2]
 gi|229508536|ref|ZP_04398039.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286]
 gi|229511393|ref|ZP_04400872.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|229518532|ref|ZP_04407975.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9]
 gi|229607941|ref|YP_002878589.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236]
 gi|254848637|ref|ZP_05237987.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10]
 gi|262161670|ref|ZP_06030688.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1]
 gi|298498397|ref|ZP_07008204.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757]
 gi|9656020|gb|AAF94670.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548565|gb|EAX58619.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80]
 gi|126510936|gb|EAZ73530.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457]
 gi|126519674|gb|EAZ76897.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|227009562|gb|ACP05774.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2]
 gi|229343221|gb|EEO08196.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9]
 gi|229351358|gb|EEO16299.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|229354490|gb|EEO19413.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286]
 gi|229370596|gb|ACQ61019.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236]
 gi|254844342|gb|EET22756.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10]
 gi|262028402|gb|EEY47057.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1]
 gi|297542730|gb|EFH78780.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 38.4 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHLAGDSPALRFIEQDCVQCGLCVKACPEQ 464


>gi|312622731|ref|YP_004024344.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203198|gb|ADQ46525.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 598

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + +NC+ CK    V  CP     E  N + I    C  CG+C+  CP  AI+   E
Sbjct: 540 FKINQNCLKCKVCLNVTGCPAIDEDENGN-IFIDSVLCKGCGLCKNFCPYYAIEKVME 596


>gi|153869234|ref|ZP_01998890.1| nitrate reductase, beta subunit [Beggiatoa sp. PS]
 gi|152074219|gb|EDN71097.1| nitrate reductase, beta subunit [Beggiatoa sp. PS]
          Length = 498

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + V   C  C +  CV  CP    Y+   +  + +  + C     C   CP      + 
Sbjct: 178 FYVPRICNHCLNPACVASCPSGALYKRGEDGIVLLDQEVCRAWRYCVSACPYKKSYFNW 236


>gi|222053575|ref|YP_002535937.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562864|gb|ACM18836.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 593

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV E C+ C    C++ CP +   +E      +  ++C  C  C   C   AI
Sbjct: 542 VVEEKCVKC--GACLKACPSNAIIWEKGQIAYLDKEKCTKCKSCYDACRFMAI 592


>gi|15679732|ref|NP_276850.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622871|gb|AAB86210.1| pyruvate oxidoreductase, gamma subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 261

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C +  C+  CP  C         I  D C  CG+C  +CPV AIK + E
Sbjct: 207 PVLDKDKCIDCDN--CILFCPEGCINRE---HEIDYDYCKGCGICAEKCPVKAIKMERE 260


>gi|329941715|ref|ZP_08290980.1| nitrate reductase subunit beta NarH [Streptomyces griseoaurantiacus
           M045]
 gi|329299432|gb|EGG43332.1| nitrate reductase subunit beta NarH [Streptomyces griseoaurantiacus
           M045]
          Length = 574

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+ E    + +  D C    +C   CP   +  
Sbjct: 190 CEHCLNPSCAASCPSGAIYKREEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 240


>gi|297618262|ref|YP_003703421.1| electron transfer flavoprotein alpha/beta-subunit
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297146099|gb|ADI02856.1| Electron transfer flavoprotein alpha/beta-subunit
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 394

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  +    CI C    CVE CP        N   +  D C  CG C  +CPV AI     
Sbjct: 1  MITIDETLCIGC--GICVETCPFGSITLVNNVPVV-SDTCTLCGSCAHDCPVGAIVITRP 57

Query: 61 PGLEL 65
               
Sbjct: 58 ETKAK 62


>gi|293370175|ref|ZP_06616735.1| ferredoxin [Bacteroides ovatus SD CMC 3f]
 gi|292634672|gb|EFF53201.1| ferredoxin [Bacteroides ovatus SD CMC 3f]
          Length = 304

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV+ CP +      N   I P++C  C  C   CP ++I     P  + 
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNSIIELNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KEE 278



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 188


>gi|282857225|ref|ZP_06266469.1| ferredoxin [Pyramidobacter piscolens W5455]
 gi|282585011|gb|EFB90335.1| ferredoxin [Pyramidobacter piscolens W5455]
          Length = 279

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T  CI C    CV+VCP            I P  C++CG+C  +CPV AI  
Sbjct: 214 VCTVGCIGC--QMCVKVCPKQTISMKGALAVIDPSNCVNCGLCAAKCPVHAIDN 265



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C+      CV+ C  D  +       +  D+C+ C  C   CP   I  
Sbjct: 144 ACMG--FGTCVKACKFDAIHVINGVAKVDRDKCVGCQACVEACPRGIIAM 191


>gi|295401612|ref|ZP_06811580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110873|ref|YP_003989189.1| Fe-S-cluster-containing hydrogenase components 1 [Geobacillus sp.
           Y4.1MC1]
 gi|294976379|gb|EFG51989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215974|gb|ADP74578.1| Fe-S-cluster-containing hydrogenase components 1 [Geobacillus sp.
           Y4.1MC1]
          Length = 162

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C+   CV VCP    ++  EN    +  +CI C +C   CP  AI
Sbjct: 57  VPTVCRQCEDAPCVAVCPTGAMFKLDENTNVCNLQQCIGCWMCALSCPFGAI 108


>gi|229529443|ref|ZP_04418833.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)]
 gi|229333217|gb|EEN98703.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 40.7 bits (94), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|171463534|ref|YP_001797647.1| NADH-quinone oxidoreductase, chain I [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193072|gb|ACB44033.1| NADH-quinone oxidoreductase, chain I [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 163

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                  +   I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIGCKL--CEAVCPAYAITIETAERDDGTRRTSRYDIDLTKCIFCGFCEEACPVDAI 118


>gi|144900794|emb|CAM77658.1| NADH-quinone oxidoreductase, chain I [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 162

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      +   +CI CG+C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAEPRPDGSRRARRYDLDMTKCIYCGLCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +  +E       +  K++ L +  + +  
Sbjct: 118 V--EGPNFEFATETRAEL------MYNKQKLLANGDRWEAE 150


>gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 626

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  + C  C    C   CP +    E      I+ ++C+ CG+C  +CP  AI
Sbjct: 571 YVINPDICKGC--GLCARSCPQNAITGERGKPYTINQEKCVKCGLCASKCPFKAI 623



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            I+PD C  CG+C   CP +AI  +
Sbjct: 560 CPSGMCT-AFKKYVINPDICKGCGLCARSCPQNAITGE 596


>gi|52548771|gb|AAU82620.1| heterodisulfide reductase subunit A and related polyferredoxins
           [uncultured archaeon GZfos18F2]
          Length = 928

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +V    C  C    CV +CP       E      I    C  CG+C   C   AI    
Sbjct: 852 AHVDAAACSSC--GVCVSICPYSAPRFNEKTGRAEIESALCKGCGLCTASCRSGAIHLSG 909

Query: 60  EPGLELWLKI 69
               +++ +I
Sbjct: 910 FDNDQVFSQI 919



 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 23/83 (27%), Gaps = 25/83 (30%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECID-- 42
           YV T  CI C    C E CP                  V           I  D CI   
Sbjct: 21  YVDTTKCIAC--GLCAEKCPKKVPNEYDGGLSKRKAIYVKYPQAVPLKYVIDRDHCIFFK 78

Query: 43  ---CGVCEPECPVDAIKPDTEPG 62
              C  CE  CP  A+  D    
Sbjct: 79  KGKCRACEKFCPSGAVNFDDSEK 101


>gi|295103567|emb|CBL01111.1| hypothetical protein [Faecalibacterium prausnitzii SL3/3]
          Length = 255

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  T+ CI C    CVE+CP++               C  C  C   CP +AI+ 
Sbjct: 182 AFRATDACIGC--GKCVELCPLNNIRLENGKPV-WGKNCTHCMACICYCPKEAIEY 234


>gi|226329125|ref|ZP_03804643.1| hypothetical protein PROPEN_03028 [Proteus penneri ATCC 35198]
 gi|225202311|gb|EEG84665.1| hypothetical protein PROPEN_03028 [Proteus penneri ATCC 35198]
          Length = 158

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
          +C  C+   C+ VCP    +  E    + +  ++CI C  C   CP  
Sbjct: 26 SCQQCEDAPCIPVCPTGASWRDETNGIVRVDKEKCIGCSYCISACPYQ 73



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGV-------CEPECPVDAI 55
           V  E CI C +  C+  CP    Y           + C++  +       C   CP +A+
Sbjct: 55  VDKEKCIGCSY--CISACPYQVRYLNPVTHVADKCDFCLESRLQKGFPPICVSACPQNAL 112

Query: 56  KP--DTEPGLELWLK 68
               +  P ++ WLK
Sbjct: 113 LFGREDSPQIQEWLK 127


>gi|215488858|ref|YP_002331289.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312968084|ref|ZP_07782295.1| iron-sulfur protein [Escherichia coli 2362-75]
 gi|215266930|emb|CAS11373.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312287343|gb|EFR15252.1| iron-sulfur protein [Escherichia coli 2362-75]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 617

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           TY +    C  C    CV  CPV       +    I+ D CI CG+C   C  DA+K +
Sbjct: 561 TYTIDPNECTSCL--ACVRECPVGAISGPKKEPQVINQDLCIKCGLCHDVCQFDAVKVE 617


>gi|311281329|ref|YP_003943560.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
 gi|308750524|gb|ADO50276.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
          Length = 301

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    C  VCP  C    +    I  D C  CG C   CP  A+K           
Sbjct: 55  KCVGC--QRCAAVCPQGCHRFAQGKHEIDFDACRACGRCVEVCPEQALKIYGRSYEVD-- 110

Query: 68  KINSEYATQWPNITT 82
           ++  E A   P  T 
Sbjct: 111 ELIREVAKDVPYFTK 125


>gi|300245721|gb|ADJ93918.1| putative benzoate-degrading protein BamE [Clostridia bacterium
           enrichment culture clone BF]
          Length = 535

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE----NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CI C   +CV VC        E        ++P  C   G+C  +CP  AI        E
Sbjct: 466 CIGC--AECVAVCTYGAIEMRETRQGKKAIVNPVLCKGDGLCNAKCPTGAISLKHFTDKE 523

Query: 65  LWLKINS 71
           LW +I++
Sbjct: 524 LWSQIDA 530


>gi|326789304|ref|YP_004307125.1| nitroreductase [Clostridium lentocellum DSM 5427]
 gi|326540068|gb|ADZ81927.1| nitroreductase [Clostridium lentocellum DSM 5427]
          Length = 272

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 12/102 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----- 55
           M  + TE C  C    C++ C        +         C  CG C   CP  A+     
Sbjct: 1   MITINTEKCTGCSL--CIKDCFARDISLVDGKAVASNKTCFKCGHCIAICPQKAVSTTEY 58

Query: 56  -KPDTEPGLELWLKINSE----YATQWPNITTKKESLPSAAK 92
              + +        IN++    +      I   K+    A K
Sbjct: 59  NMNEVKDYDAESFNINADHLLNFIKFRRTIRQFKKQDVEADK 100


>gi|296119514|ref|ZP_06838072.1| nitrate reductase, beta subunit [Corynebacterium ammoniagenes DSM
           20306]
 gi|295967397|gb|EFG80664.1| nitrate reductase, beta subunit [Corynebacterium ammoniagenes DSM
           20306]
          Length = 539

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 184 CEHCINPTCVSSCPSGAMYKRAEDGIVLVDQDQCRGWRMCVSGCPYKKVYF 234


>gi|298481058|ref|ZP_06999252.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. D22]
 gi|295083949|emb|CBK65472.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           xylanisolvens XB1A]
 gi|298272632|gb|EFI14199.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. D22]
          Length = 304

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV+ CP +      N   I P++C  C  C   CP ++I     P  + 
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNSIIELNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KEE 278



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 188


>gi|262372076|ref|ZP_06065355.1| electron transport complex protein [Acinetobacter junii SH205]
 gi|262312101|gb|EEY93186.1| electron transport complex protein [Acinetobacter junii SH205]
          Length = 266

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPG 62
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I   PD  P 
Sbjct: 92  EDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVPDNNPI 149

Query: 63  LELWLKINSE 72
                +IN +
Sbjct: 150 PTEDQRINEQ 159


>gi|238917826|ref|YP_002931343.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium eligens ATCC 27750]
 gi|238873186|gb|ACR72896.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium eligens ATCC 27750]
          Length = 585

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C  CK   C+++ CP   F   +    I P  CI C VC+  C  DAI  
Sbjct: 538 DKCKGCK--ACMQIGCPAISFK--DKKAHIDPTLCIGCEVCKQMCRFDAIGM 585


>gi|258405003|ref|YP_003197745.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797230|gb|ACV68167.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 352

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C   C V    + E    I     C+ C  C   CP +    +    L+ 
Sbjct: 108 CNHCQEPACASACFVKALKKTETGAVIYDESVCVGCRYCMIACPFNIPAYEYNKALDP 165


>gi|167754888|ref|ZP_02427015.1| hypothetical protein CLORAM_00392 [Clostridium ramosum DSM 1402]
 gi|167704938|gb|EDS19517.1| hypothetical protein CLORAM_00392 [Clostridium ramosum DSM 1402]
          Length = 257

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E CI C    C++VCP++     E  + I  D C+ C  C   CP  AI        E
Sbjct: 176 VDEKCIGC--QTCIKVCPMNNIELIEGKIKI-KDNCMTCLACFHWCPTAAIYM----SKE 228

Query: 65  LWLKINSEY 73
             ++   +Y
Sbjct: 229 KEIERREKY 237


>gi|111075028|gb|ABH04878.1| Fe-S cluster-containing protein [Heliobacillus mobilis]
          Length = 159

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C+   C +VCP +   +  +  + +  ++CI C  C   CP   +         +  
Sbjct: 53  CMQCEEAACSKVCPSEALSKNASGTVVVDENKCIGCKFCISACPFGNVNYHPVERKIIKC 112

Query: 68  KI-----NSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
            +     N         I  K+ ++ +  K   V  K+++ F  
Sbjct: 113 DLCGGDSNCAKVCPTGAIEFKEANVANLRKKKAVADKFKEVFGE 156


>gi|86357247|ref|YP_469139.1| NADH dehydrogenase subunit I [Rhizobium etli CFN 42]
 gi|190891295|ref|YP_001977837.1| NADH-ubiquinone oxidoreductase, chain I [Rhizobium etli CIAT 652]
 gi|218462497|ref|ZP_03502588.1| NADH dehydrogenase subunit I [Rhizobium etli Kim 5]
 gi|218509388|ref|ZP_03507266.1| NADH dehydrogenase subunit I [Rhizobium etli Brasil 5]
 gi|115502507|sp|Q2K9S4|NUOI1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|86281349|gb|ABC90412.1| NADH-ubiquinone oxidoreductase chain I protein [Rhizobium etli CFN
           42]
 gi|190696574|gb|ACE90659.1| NADH-ubiquinone oxidoreductase protein, chain I [Rhizobium etli
           CIAT 652]
 gi|327188496|gb|EGE55710.1| NADH dehydrogenase subunit I [Rhizobium etli CNPAF512]
          Length = 163

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K   L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YFDKARLLDNGDRWERE 151


>gi|11095245|gb|AAG29808.1|AF249899_1 carbon monoxide dehydrogenase subunit CooF [Carboxydothermus
           hydrogenoformans]
          Length = 183

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+   
Sbjct: 98  EQCKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIRVID 151


>gi|332085057|gb|EGI90237.1| iron-sulfur protein [Shigella boydii 5216-82]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|323141862|ref|ZP_08076723.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT
          12067]
 gi|322413609|gb|EFY04467.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT
          12067]
          Length = 240

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C    C   CPV      +    I   +C+ CG C   C   A+  
Sbjct: 36 CDGC--GACAAACPVGAVSVADGKAKIDYSKCVFCGRCVEACARKALVH 82


>gi|315615112|gb|EFU95749.1| hydrogenase-4 component A [Escherichia coli 3431]
          Length = 164

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 12 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 60


>gi|295109804|emb|CBL23757.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus obeum A2-162]
          Length = 287

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    C + C  +     +  L I   +C  CG C   CPVDA
Sbjct: 163 EDTCIHC--GVCEKACREEAITFRDGKLVIDTQKCNYCGRCAKSCPVDA 209



 Score = 33.4 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           + T+ C  C    C + CPVD +   E FL 
Sbjct: 190 IDTQKCNYC--GRCAKSCPVDAWDVNEAFLV 218


>gi|261403708|ref|YP_003247932.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus vulcanius
           M7]
 gi|261370701|gb|ACX73450.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus vulcanius
           M7]
          Length = 235

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  + C  C    CVE CP       + F  I   +C+ CG C+  CP  AI    E
Sbjct: 145 IDRKKCNCCLK--CVEACPNGAIIVRKRFPEIVLSKCLGCGRCKRVCPNGAIIEGKE 199


>gi|213647942|ref|ZP_03377995.1| putative electron-transport protein [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
          Length = 100

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV         + + P  CI C  C   CP  A+
Sbjct: 1  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAM 47


>gi|194438990|ref|ZP_03071074.1| formate hydrogenlyase, subunit B [Escherichia coli 101-1]
 gi|253772421|ref|YP_003035252.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162655|ref|YP_003045763.1| hydrogenase 3, Fe-S subunit [Escherichia coli B str. REL606]
 gi|297517737|ref|ZP_06936123.1| hydrogenase 3, Fe-S subunit [Escherichia coli OP50]
 gi|300930582|ref|ZP_07145974.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|194422111|gb|EDX38114.1| formate hydrogenlyase, subunit B [Escherichia coli 101-1]
 gi|242378280|emb|CAQ33056.1| hydrogenase 3, Fe-S subunit, subunit of hydrogenase 3 and formate
          hydrogenlyase complex [Escherichia coli BL21(DE3)]
 gi|253323465|gb|ACT28067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974556|gb|ACT40227.1| hydrogenase 3, Fe-S subunit [Escherichia coli B str. REL606]
 gi|253978723|gb|ACT44393.1| hydrogenase 3, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|300461524|gb|EFK25017.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|323960616|gb|EGB56242.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971547|gb|EGB66780.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|168241839|ref|ZP_02666771.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194451496|ref|YP_002047695.1| hypothetical protein SeHA_C3989 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|198244915|ref|YP_002217626.1| hypothetical protein SeD_A4050 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205354729|ref|YP_002228530.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858903|ref|YP_002245554.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194409800|gb|ACF70019.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197939431|gb|ACH76764.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205274510|emb|CAR39545.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205339015|gb|EDZ25779.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206710706|emb|CAR35067.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326625412|gb|EGE31757.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326629869|gb|EGE36212.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + +    CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTSSRCIGCKSCMLACPFGAM 104


>gi|153002379|ref|YP_001368060.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151366997|gb|ABS09997.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 235

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C  CK+  CV VCP    +       + +   +C  C  C   CP +A   + 
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARLIND 158


>gi|62181355|ref|YP_217772.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|224584629|ref|YP_002638427.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|62128988|gb|AAX66691.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|224469156|gb|ACN46986.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|322715838|gb|EFZ07409.1| Formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
          Length = 202

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|46580807|ref|YP_011615.1| heterodisulfide reductase subunit A [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601876|ref|YP_966276.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46450227|gb|AAS96875.1| heterodisulfide reductase, A subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562105|gb|ABM27849.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311234513|gb|ADP87367.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris RCH1]
          Length = 652

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            CI C    C+  CP          GE    +    C  CG+C   CP  AI+       
Sbjct: 583 RCIGC--GKCITTCPYGAIEWMELRGETKARVIETVCQGCGICTVTCPQGAIQLQHFTDN 640

Query: 64  ELWLKINS 71
           ++  ++N+
Sbjct: 641 QILAEVNA 648



 Score = 39.2 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECID 42
           TYV  + C  C    C+E CP                               I P  C  
Sbjct: 235 TYVDWDLCTGC--GLCMEKCPSRKSPDAFNEHVGVTTAINIPFPQAIPKKAIIDPTACRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AI+ D E  
Sbjct: 293 FVKGKCGVCAKMCPTGAIRYDMEDE 317


>gi|20094366|ref|NP_614213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
 gi|19887431|gb|AAM02143.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
          Length = 252

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M +VV ++ C+ C    C   CP       +    ++ + CI CG C  +CP   I P  
Sbjct: 185 MYHVVNKSMCMGC--GTCAAACPTRAIEIVDGRPVVNENRCIKCGACFTQCPRT-IWPGD 241

Query: 60  EPGLE 64
           E   E
Sbjct: 242 EAIKE 246


>gi|331655209|ref|ZP_08356208.1| putative electron transport protein YsaA [Escherichia coli M718]
 gi|331047224|gb|EGI19302.1| putative electron transport protein YsaA [Escherichia coli M718]
          Length = 159

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 106


>gi|303249219|ref|ZP_07335456.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489394|gb|EFL49345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 652

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++V  + C+ C    C+  CP     E    G+    +    C  CG+C   CP  AI+ 
Sbjct: 577 SHVDIKRCVGC--GKCIMTCPFKAIKEVEFRGQKKAEVIETVCQGCGLCTSTCPQGAIQL 634

Query: 58  DTEPGLELWLKINS 71
                 E+  ++N+
Sbjct: 635 SHFTDNEILAEVNA 648



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECID 42
           TYV  E C  C    C E CP                               I P  C  
Sbjct: 235 TYVDWELCTGC--GACTEKCPSKKNPDKFNENIGPTTSINIPFPQAIPKKAVIDPTTCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AIK D +  
Sbjct: 293 FVKGKCGVCAKVCPTGAIKYDMQDE 317


>gi|281205874|gb|EFA80063.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Polysphondylium
           pallidum PN500]
          Length = 179

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 77  EERCIACKL--CEAICPAQAITIEAEPRKDGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 134

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E       +  K++ L +  + +  
Sbjct: 135 V--EGPNFEFTTESRIEL------LYNKEKLLANGDRWETE 167


>gi|257063839|ref|YP_003143511.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791492|gb|ACV22162.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDA 54
           C  C+   CV  CP    ++ E      +  + CI C  C   CP  A
Sbjct: 67  CNHCESPACVLNCPTGAMHKDEETGVVSVDQNICIGCSTCANTCPYGA 114


>gi|291286169|ref|YP_003502985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883329|gb|ADD67029.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 259

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI+C    C + CP       E  +  +PD CI C  C   CP  A   DT    E
Sbjct: 186 EKCIIC--GACKKACPTGAMIIAE-KVTSNPDLCIMCMACAKVCPRKARYIDTPQINE 240


>gi|223007081|gb|ACM77779.1| nitrite oxidoreductase [uncultured bacterium]
          Length = 138

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I   +C     C   CP      + 
Sbjct: 86  CNHCLNPCCVASCPSGALYKRGEDGIVLIDQQKCRAWRSCVSACPYKKTYFNW 138


>gi|167751856|ref|ZP_02423983.1| hypothetical protein ALIPUT_00098 [Alistipes putredinis DSM 17216]
 gi|167660097|gb|EDS04227.1| hypothetical protein ALIPUT_00098 [Alistipes putredinis DSM 17216]
          Length = 305

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C +VCP        N   I   +C  C  C  ECP  AI
Sbjct: 221 CIGC--GKCEKVCPFGAITIQNNLAFIDSWKCKLCRKCVNECPTGAI 265


>gi|149375891|ref|ZP_01893658.1| iron-sulfur cluster-binding protein, putative [Marinobacter
           algicola DG893]
 gi|149359771|gb|EDM48228.1| iron-sulfur cluster-binding protein, putative [Marinobacter
           algicola DG893]
          Length = 659

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  T C++VCP +  +   + + I  D C  CG C   CP  AI  +  P  
Sbjct: 290 GC--TRCLDVCPTEAIFSFGDHVQIDSDICAGCGSCAAVCPTSAITMNESPFE 340



 Score = 41.1 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ C LC    CV +CP      +     +    + C+ CGVCE  CP  AI 
Sbjct: 510 IDSDKCTLCL--ACVSLCPTGALGDHPDRPEVQFTENACVQCGVCESTCPETAIN 562


>gi|309786192|ref|ZP_07680820.1| hydrogenase-4 component A [Shigella dysenteriae 1617]
 gi|308925937|gb|EFP71416.1| hydrogenase-4 component A [Shigella dysenteriae 1617]
          Length = 164

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 12 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 60


>gi|75910458|ref|YP_324754.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
          29413]
 gi|75704183|gb|ABA23859.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
          29413]
          Length = 531

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECP 51
          M Y +T  CI C   +CV +CP       +    I P  C +C       C   CP
Sbjct: 1  MPYAITNRCIQC--ANCVPLCPQGAIKVIDGDYWIDPSLCNNCEDYLEPQCVICCP 54


>gi|16130631|ref|NP_417204.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|24114015|ref|NP_708525.1| small subunit of hydrogenase-3, iron-sulfur protein (part of
          formate hydrogenlyase (FHL) complex) [Shigella flexneri
          2a str. 301]
 gi|26249123|ref|NP_755163.1| formate hydrogenlyase subunit 2 [Escherichia coli CFT073]
 gi|30064078|ref|NP_838249.1| small subunit of hydrogenase-3, iron-sulfur protein (part of
          formate hydrogenlyase (FHL) complex) [Shigella flexneri
          2a str. 2457T]
 gi|89109511|ref|AP_003291.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          W3110]
 gi|110642847|ref|YP_670577.1| formate hydrogenase-3 component B [Escherichia coli 536]
 gi|110806649|ref|YP_690169.1| small subunit of hydrogenase-3, iron-sulfur protein [Shigella
          flexneri 5 str. 8401]
 gi|157162170|ref|YP_001459488.1| formate hydrogenlyase, subunit B [Escherichia coli HS]
 gi|170019030|ref|YP_001723984.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Escherichia coli ATCC 8739]
 gi|170082300|ref|YP_001731620.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170684164|ref|YP_001744873.1| formate hydrogenlyase, subunit B [Escherichia coli SMS-3-5]
 gi|191171371|ref|ZP_03032920.1| formate hydrogenlyase, subunit B [Escherichia coli F11]
 gi|215488040|ref|YP_002330471.1| hydrogenase 3, Fe-S subunit [Escherichia coli O127:H6 str.
          E2348/69]
 gi|218690848|ref|YP_002399060.1| hydrogenase 3, Fe-S subunit [Escherichia coli ED1a]
 gi|218706218|ref|YP_002413737.1| hydrogenase 3, Fe-S subunit [Escherichia coli UMN026]
 gi|227888262|ref|ZP_04006067.1| hydrogenase 3, Fe-S subunit [Escherichia coli 83972]
 gi|238901861|ref|YP_002927657.1| hydrogenase 3, Fe-S subunit [Escherichia coli BW2952]
 gi|254037764|ref|ZP_04871822.1| hydrogenase 3 [Escherichia sp. 1_1_43]
 gi|256019497|ref|ZP_05433362.1| hydrogenase 3, Fe-S subunit [Shigella sp. D9]
 gi|256024769|ref|ZP_05438634.1| hydrogenase 3, Fe-S subunit [Escherichia sp. 4_1_40B]
 gi|260856831|ref|YP_003230722.1| hydrogenase 3, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|260869399|ref|YP_003235801.1| hydrogenase 3, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|293406216|ref|ZP_06650142.1| formate hydrogenlyase subunit 2 [Escherichia coli FVEC1412]
 gi|293412082|ref|ZP_06654805.1| formate hydrogenlyase subunit 2 [Escherichia coli B354]
 gi|293415974|ref|ZP_06658614.1| hycB formate hydrogenlyase subunit 2 [Escherichia coli B185]
 gi|293449040|ref|ZP_06663461.1| hycB [Escherichia coli B088]
 gi|298381953|ref|ZP_06991550.1| formate hydrogenlyase subunit 2 [Escherichia coli FVEC1302]
 gi|300899963|ref|ZP_07118166.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300906773|ref|ZP_07124455.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300919240|ref|ZP_07135763.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300946998|ref|ZP_07161224.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300954964|ref|ZP_07167376.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300975040|ref|ZP_07172841.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300976816|ref|ZP_07173633.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301027134|ref|ZP_07190503.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|301027393|ref|ZP_07190732.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301049519|ref|ZP_07196477.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|301305385|ref|ZP_07211479.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301645296|ref|ZP_07245246.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307139411|ref|ZP_07498767.1| hydrogenase 3, Fe-S subunit [Escherichia coli H736]
 gi|312965018|ref|ZP_07779258.1| hydrogenase-4 component A [Escherichia coli 2362-75]
 gi|312973066|ref|ZP_07787239.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|331643408|ref|ZP_08344539.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H736]
 gi|331658832|ref|ZP_08359774.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA206]
 gi|331664278|ref|ZP_08365184.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA143]
 gi|331674232|ref|ZP_08374992.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA280]
 gi|331684337|ref|ZP_08384929.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H299]
 gi|332280618|ref|ZP_08393031.1| formate hydrogenlyase subunit 2 [Shigella sp. D9]
 gi|77417742|sp|P0AAK2|HYCB_ECOL6 RecName: Full=Formate hydrogenlyase subunit 2; Short=FHL subunit
          2; AltName: Full=Hydrogenase-3 component B
 gi|77417743|sp|P0AAK1|HYCB_ECOLI RecName: Full=Formate hydrogenlyase subunit 2; Short=FHL subunit
          2; AltName: Full=Hydrogenase-3 component B
 gi|77417744|sp|P0AAK3|HYCB_SHIFL RecName: Full=Formate hydrogenlyase subunit 2; Short=FHL subunit
          2; AltName: Full=Hydrogenase-3 component B
 gi|26109530|gb|AAN81733.1|AE016765_135 Formate hydrogenlyase subunit 2 [Escherichia coli CFT073]
 gi|882617|gb|AAA69234.1| formate hydrogenlyase subunit 2 [Escherichia coli str. K-12
          substr. MG1655]
 gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|24053135|gb|AAN44232.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          (part of formate hydrogenlyase (FHL) complex) [Shigella
          flexneri 2a str. 301]
 gi|30042334|gb|AAP18059.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          (part of formate hydrogenlyase (FHL) complex) [Shigella
          flexneri 2a str. 2457T]
 gi|85675545|dbj|BAE76801.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K12 substr.
          W3110]
 gi|110344439|gb|ABG70676.1| formate hydrogenase-3 component B [Escherichia coli 536]
 gi|110616197|gb|ABF04864.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          (part of formate hydrogenlyase (FHL) complex) [Shigella
          flexneri 5 str. 8401]
 gi|157067850|gb|ABV07105.1| formate hydrogenlyase, subunit B [Escherichia coli HS]
 gi|169753958|gb|ACA76657.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli ATCC 8739]
 gi|169890135|gb|ACB03842.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170521882|gb|ACB20060.1| formate hydrogenlyase, subunit B [Escherichia coli SMS-3-5]
 gi|190908305|gb|EDV67895.1| formate hydrogenlyase, subunit B [Escherichia coli F11]
 gi|215266112|emb|CAS10537.1| hydrogenase 3, Fe-S subunit [Escherichia coli O127:H6 str.
          E2348/69]
 gi|218428412|emb|CAR09337.2| hydrogenase 3, Fe-S subunit [Escherichia coli ED1a]
 gi|218433315|emb|CAR14215.1| hydrogenase 3, Fe-S subunit [Escherichia coli UMN026]
 gi|226839388|gb|EEH71409.1| hydrogenase 3 [Escherichia sp. 1_1_43]
 gi|227834531|gb|EEJ44997.1| hydrogenase 3, Fe-S subunit [Escherichia coli 83972]
 gi|238861455|gb|ACR63453.1| hydrogenase 3, Fe-S subunit [Escherichia coli BW2952]
 gi|257755480|dbj|BAI26982.1| hydrogenase 3, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|257765755|dbj|BAI37250.1| hydrogenase 3, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|260448226|gb|ACX38648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli DH1]
 gi|281602089|gb|ADA75073.1| Formate hydrogenlyase subunit 2 [Shigella flexneri 2002017]
 gi|284922660|emb|CBG35748.1| formate hydrogenlyase subunit 2 [Escherichia coli 042]
 gi|291322130|gb|EFE61559.1| hycB [Escherichia coli B088]
 gi|291426222|gb|EFE99254.1| formate hydrogenlyase subunit 2 [Escherichia coli FVEC1412]
 gi|291432163|gb|EFF05145.1| hycB formate hydrogenlyase subunit 2 [Escherichia coli B185]
 gi|291468853|gb|EFF11344.1| formate hydrogenlyase subunit 2 [Escherichia coli B354]
 gi|298277093|gb|EFI18609.1| formate hydrogenlyase subunit 2 [Escherichia coli FVEC1302]
 gi|299879307|gb|EFI87518.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300298750|gb|EFJ55135.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300308808|gb|EFJ63328.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300318099|gb|EFJ67883.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300356472|gb|EFJ72342.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300395166|gb|EFJ78704.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300401467|gb|EFJ85005.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300410002|gb|EFJ93540.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|300413685|gb|EFJ96995.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300453385|gb|EFK17005.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300839305|gb|EFK67065.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301076414|gb|EFK91220.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307554699|gb|ADN47474.1| formate hydrogenlyase subunit 2 [Escherichia coli ABU 83972]
 gi|309703083|emb|CBJ02415.1| formate hydrogenlyase subunit 2 [Escherichia coli ETEC H10407]
 gi|310333008|gb|EFQ00222.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|312290574|gb|EFR18454.1| hydrogenase-4 component A [Escherichia coli 2362-75]
 gi|313648200|gb|EFS12645.1| hydrogenase-4 component A [Shigella flexneri 2a str. 2457T]
 gi|315137331|dbj|BAJ44490.1| formate hydrogenlyase subunit 2 [Escherichia coli DH1]
 gi|315254506|gb|EFU34474.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|315293719|gb|EFU53071.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|323154940|gb|EFZ41132.1| hydrogenase-4 component A [Escherichia coli EPECa14]
 gi|323172988|gb|EFZ58619.1| hydrogenase-4 component A [Escherichia coli LT-68]
 gi|323180145|gb|EFZ65697.1| hydrogenase-4 component A [Escherichia coli 1180]
 gi|323183251|gb|EFZ68648.1| hydrogenase-4 component A [Escherichia coli 1357]
 gi|323935720|gb|EGB32034.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941445|gb|EGB37628.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323966871|gb|EGB62300.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|323978666|gb|EGB73748.1| 4Fe-4S binding domain-containing protein [Escherichia coli
          TW10509]
 gi|324005686|gb|EGB74905.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
 gi|324013679|gb|EGB82898.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
 gi|324119974|gb|EGC13852.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|327251447|gb|EGE63133.1| hydrogenase-4 component A [Escherichia coli STEC_7v]
 gi|331036879|gb|EGI09103.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H736]
 gi|331053414|gb|EGI25443.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA206]
 gi|331058209|gb|EGI30190.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA143]
 gi|331068326|gb|EGI39721.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA280]
 gi|331077952|gb|EGI49158.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H299]
 gi|332102970|gb|EGJ06316.1| formate hydrogenlyase subunit 2 [Shigella sp. D9]
 gi|332344605|gb|AEE57939.1| hydrogenase-4 component A [Escherichia coli UMNK88]
 gi|332753437|gb|EGJ83817.1| hydrogenase-4 component A [Shigella flexneri 4343-70]
 gi|332753946|gb|EGJ84321.1| hydrogenase-4 component A [Shigella flexneri K-671]
 gi|332755662|gb|EGJ86025.1| hydrogenase-4 component A [Shigella flexneri 2747-71]
 gi|332765670|gb|EGJ95883.1| 4Fe-4S binding domain protein [Shigella flexneri 2930-71]
 gi|333000675|gb|EGK20252.1| hydrogenase-4 component A [Shigella flexneri K-218]
 gi|333001067|gb|EGK20637.1| hydrogenase-4 component A [Shigella flexneri K-272]
 gi|333015428|gb|EGK34767.1| hydrogenase-4 component A [Shigella flexneri K-227]
 gi|333015869|gb|EGK35205.1| hydrogenase-4 component A [Shigella flexneri K-304]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|115352416|ref|YP_774255.1| ferredoxin [Burkholderia ambifaria AMMD]
 gi|115282404|gb|ABI87921.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           ambifaria AMMD]
          Length = 339

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C P CPVD I  
Sbjct: 112 AFIDESLCIGC--TLCMQACPVDAIVGAPKQMHTIVESLCTGCDLCVPPCPVDCIAM 166


>gi|117925794|ref|YP_866411.1| hydrogenase 2 protein HybA [Magnetococcus sp. MC-1]
 gi|117609550|gb|ABK45005.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Magnetococcus sp. MC-1]
          Length = 340

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +C+ C    CV  CPV           +  H D CI C  C   CP +  + + +   
Sbjct: 113 SCMHCVDPGCVSACPVTAMRRNSLTGIVTHHADACIGCRTCMTGCPYNVPQFEYDKPF 170


>gi|325959022|ref|YP_004290488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330454|gb|ADZ09516.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 460

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V+ +NCI C    C+  CPV C            D C+ CG C   C  +AI+   E  
Sbjct: 316 VIEDNCIGC--GACMSECPVKCIELEMPSPVHIDDRCVHCGKCIETCQFNAIELAEEYF 372



 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT---E 60
           + +  C  C+   C+  CPVD  ++ E+      D+C+ C +C   CP +AI   T   E
Sbjct: 25  IDSSKCEACEDKPCLMSCPVDAIWKTEDGKIEIDDKCVGCVLCREACPYNAINMKTTLSE 84

Query: 61  PGLELWLKINSEYATQW 77
           P  E    IN++   Q 
Sbjct: 85  PIRENVPNINTKLCRQC 101



 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C+ C    CV  CP +     ++ + +  ++CI CG C+  CPV+AIK  TE
Sbjct: 399 EACMAC--GICVRKCPTNALKLEKDEVIVDTEKCILCGECDIICPVNAIKLKTE 450



 Score = 38.4 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 10/76 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + C+ C    C E CP +             EN   I+   C  CG C   C   +I+
Sbjct: 57  IDDKCVGCVL--CREACPYNAINMKTTLSEPIRENVPNINTKLCRQCGACVKACKTGSIQ 114

Query: 57  PDTEPGLELWLKINSE 72
             +    E   +IN +
Sbjct: 115 LISSGNEEAHSEINED 130



 Score = 34.2 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECP 51
           +  + C+ C +  C  VCP +    GE           + ++  +CI C  C   CP
Sbjct: 127 INEDTCVRCGY--CARVCPTEAIKYGEILPRSVVGGKAIVVNQKDCIGCMTCTKVCP 181


>gi|315925900|ref|ZP_07922105.1| ferredoxin [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620721|gb|EFV00697.1| ferredoxin [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 56

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +++ CI C    C + CP +   EG     I  D CIDCG C  +CP+ AI
Sbjct: 1  MAYTISDECISC--GACADQCPTEAISEGSP-YVIDADACIDCGSCADQCPMGAI 52


>gi|293453883|ref|ZP_06664302.1| electron transporter HydN [Escherichia coli B088]
 gi|331679654|ref|ZP_08380324.1| putative electron transport protein YsaA [Escherichia coli H591]
 gi|291322009|gb|EFE61440.1| electron transporter HydN [Escherichia coli B088]
 gi|331072826|gb|EGI44151.1| putative electron transport protein YsaA [Escherichia coli H591]
          Length = 159

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 106


>gi|257456810|ref|ZP_05621994.1| ferredoxin [Treponema vincentii ATCC 35580]
 gi|257445816|gb|EEV20875.1| ferredoxin [Treponema vincentii ATCC 35580]
          Length = 257

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C    C   CP    +        +P  C  C  C   CP  AI        E  
Sbjct: 189 ERCIGC--GTCAANCPSKSLHIKNKKAVFYPGNCTICYRCINNCPAKAITLIGTDVFEQC 246

Query: 67  LKIN 70
           L  N
Sbjct: 247 LFKN 250


>gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 636

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           ++    C  C    C+  CP      G+     I  ++C  CG C   CP
Sbjct: 563 HIDPAKCKGC--GSCLRKCPATAIEGGKKTIHVIDQEKCTKCGTCIEACP 610


>gi|197121695|ref|YP_002133646.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|220916491|ref|YP_002491795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171544|gb|ACG72517.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|219954345|gb|ACL64729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 239

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 14/77 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFY------------EGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+ C    C  +CP  C Y            +      I    CI CG C   CP DAI
Sbjct: 90  RCVACYM--CATICPAQCIYIEAAEYPDDPVEKYPAKFVIDELRCIVCGFCVEACPKDAI 147

Query: 56  KPDTEPGLELWLKINSE 72
           + D+        + +++
Sbjct: 148 RMDSGEHTPPSYERSAQ 164


>gi|163783140|ref|ZP_02178134.1| dimethylsulfoxide reductase chain B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881474|gb|EDP74984.1| dimethylsulfoxide reductase chain B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 177

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           + +  NC  C    CV  CP     + E    + +    CI C  C   CP  AI  
Sbjct: 52  FFLPMNCFHCDPAPCVMACPTSAMRKREKDGIVYVEELLCIGCKACIIACPYGAITF 108


>gi|241662549|ref|YP_002980909.1| ferredoxin [Ralstonia pickettii 12D]
 gi|240864576|gb|ACS62237.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           pickettii 12D]
          Length = 276

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E CI C  T C++ CPVD           +  D C  C +C P CPVD I  
Sbjct: 87  AVIDPERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDM 141


>gi|148244307|ref|YP_001219001.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326134|dbj|BAF61277.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 181

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           +V  + CI C  T C++ CPVD F      +  +  +EC  C +C P CPVD I 
Sbjct: 109 FVDEQACIGC--TLCIQACPVDAFVGASKMMTQVIINECTGCDLCIPVCPVDCIY 161


>gi|158520573|ref|YP_001528443.1| nitroreductase [Desulfococcus oleovorans Hxd3]
 gi|158509399|gb|ABW66366.1| nitroreductase [Desulfococcus oleovorans Hxd3]
          Length = 345

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 6/76 (7%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA----IHPDECIDCGVCEPECPVDAIKPDTE 60
            E C  C    CV  CP+      +   A         CI C  C   CP  AI  + +
Sbjct: 22 DEEKCNGC--GACVAACPMQILMVADGKAAPNQRYDHFRCITCQNCVATCPNKAIVIEGD 79

Query: 61 PGLELWLKINSEYATQ 76
            +      N+     
Sbjct: 80 YRVGAGFWKNTHLFEN 95


>gi|108763060|ref|YP_634214.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Myxococcus xanthus DK 1622]
 gi|108466940|gb|ABF92125.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Myxococcus xanthus DK 1622]
          Length = 1064

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C+   C  VCPV+   +  E    +  + C+    C   CP  
Sbjct: 884 CVHCEKAPCEYVCPVNATVHSDEGLNDMVYNRCVGTRYCSNNCPYK 929


>gi|26250216|ref|NP_756256.1| putative electron transport protein ysaA [Escherichia coli CFT073]
 gi|293417021|ref|ZP_06659658.1| electron transporter HydN [Escherichia coli B185]
 gi|331649404|ref|ZP_08350490.1| putative electron transport protein YsaA [Escherichia coli M605]
 gi|26110645|gb|AAN82830.1|AE016768_248 Putative electron transport protein ysaA [Escherichia coli CFT073]
 gi|291431597|gb|EFF04582.1| electron transporter HydN [Escherichia coli B185]
 gi|331041902|gb|EGI14046.1| putative electron transport protein YsaA [Escherichia coli M605]
          Length = 159

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 106


>gi|88810616|ref|ZP_01125873.1| nitrate reductase, beta subunit [Nitrococcus mobilis Nb-231]
 gi|88792246|gb|EAR23356.1| nitrate reductase, beta subunit [Nitrococcus mobilis Nb-231]
          Length = 512

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I  + C    +C   CP      + 
Sbjct: 187 CNHCLNPGCVAACPTGAIYKRGEDGIVLISQNRCRAWRMCVSGCPYKKTYFNW 239


>gi|330984846|gb|EGH82949.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
 gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
          Length = 619

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECP 51
           VV E C  C    C++ CPV       ++  +I  ++CI CG C   C 
Sbjct: 561 VVDEKCEGC--MLCLKSCPVGAVSGTKKHIHSIDTEKCIKCGTCIELCS 607


>gi|302337663|ref|YP_003802869.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634848|gb|ADK80275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 234

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C  C    C   CPV      EN     ++ D CI CG CE  CP      D E
Sbjct: 131 ETCKQCAEPYCANACPVQAISTDENTGARVVNTDICIGCGSCERACPFGMATVDPE 186



 Score = 34.2 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPD-TEP 61
           V T+ CI C    C   CP                  C     C   CP  A+     E 
Sbjct: 161 VNTDICIGC--GSCERACPFGMATVDPERKKSTKCLLCYGHPACVAGCPNSALTFVSWED 218

Query: 62  GLELWLK 68
            +EL+ K
Sbjct: 219 AIELYKK 225


>gi|294053884|ref|YP_003547542.1| DMSO reductase anchor subunit (DmsC) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613217|gb|ADE53372.1| DMSO reductase anchor subunit (DmsC) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 514

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           VT  C  C    C+  CPV  + + E    +    D+CI C  C  +CP D
Sbjct: 96  VTTACHHCADPGCLNGCPVLAYEKDEETGIVRHLDDQCIGCQYCILKCPYD 146


>gi|290475319|ref|YP_003468207.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii
           SS-2004]
 gi|289174640|emb|CBJ81434.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii
           SS-2004]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  ENCI C  T C++ CPVD           +  D C  C +C   CP D I  
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIIGANRAIHTVVEDLCTGCDLCVAPCPTDCITM 164


>gi|288931410|ref|YP_003435470.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ferroglobus placidus DSM 10642]
 gi|288893658|gb|ADC65195.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ferroglobus placidus DSM 10642]
          Length = 623

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + VTE C LC        CP   +      + I    C  CG C   CP  AI
Sbjct: 567 PFEVTEACTLCLRCVSDFTCPAIIY--DGEKVWIDEALCAGCGFCVQVCPEKAI 618


>gi|257063526|ref|YP_003143198.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791179|gb|ACV21849.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 212

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C+ C    C  VCP    Y+ E    +  +  ECI C  C   CP   ++   E      
Sbjct: 65  CMHCDTPACTAVCPTGATYKDEETGIVMQNVSECIGCRSCIEACPYTGVRTYLEEDPIPA 124

Query: 67  LK 68
           ++
Sbjct: 125 ME 126


>gi|256822167|ref|YP_003146130.1| RnfABCDGE type electron transport complex subunit B [Kangiella
           koreensis DSM 16069]
 gi|256795706|gb|ACV26362.1| electron transport complex, RnfABCDGE type, B subunit [Kangiella
           koreensis DSM 16069]
          Length = 195

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+  + CI C  T C++ CPVD           +  DEC  C +C   CPVD I     
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGAPKLMHTVIIDECTGCDLCVEPCPVDCIDMLEI 164

Query: 61  PG 62
           P 
Sbjct: 165 PQ 166


>gi|167769723|ref|ZP_02441776.1| hypothetical protein ANACOL_01057 [Anaerotruncus colihominis DSM
           17241]
 gi|167668084|gb|EDS12214.1| hypothetical protein ANACOL_01057 [Anaerotruncus colihominis DSM
           17241]
          Length = 177

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           C  C    C + CP      G      I    CI CG+C   CP  A+ 
Sbjct: 56  CQHCSDASCAKACPRGAIKRGAAGEQLIDDALCIGCGLCVRACPFGAVY 104


>gi|124027920|ref|YP_001013240.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Hyperthermus butylicus DSM 5456]
 gi|123978614|gb|ABM80895.1| Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Hyperthermus butylicus DSM 5456]
          Length = 264

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C + CPV+         + I  D+C+ C  C   CP D  + D
Sbjct: 75  CMHCSEAPCAKACPVNAIEVHPEGAVVIRSDKCVGCQYCIEACPYDVPRYD 125


>gi|16766951|ref|NP_462566.1| oxidoreductase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549092|ref|ZP_02342851.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167990901|ref|ZP_02572000.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197262525|ref|ZP_03162599.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|16422231|gb|AAL22525.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240780|gb|EDY23400.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205325550|gb|EDZ13389.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205330788|gb|EDZ17552.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261248814|emb|CBG26667.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995921|gb|ACY90806.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160202|emb|CBW19724.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914692|dbj|BAJ38666.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226722|gb|EFX51772.1| Electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132026|gb|ADX19456.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990516|gb|AEF09499.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + +    CI C  C   CP  A+
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTSSRCIGCKSCMLACPFGAM 104


>gi|16761629|ref|NP_457246.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. CT18]
 gi|16766158|ref|NP_461773.1| hydrogenase-3 iron-sulfur subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|29143113|ref|NP_806455.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|161615755|ref|YP_001589720.1| hypothetical protein SPAB_03546 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167550308|ref|ZP_02344065.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167994156|ref|ZP_02575248.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168262034|ref|ZP_02684007.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168464022|ref|ZP_02697939.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168820460|ref|ZP_02832460.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|198245498|ref|YP_002216824.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200386852|ref|ZP_03213464.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|205353796|ref|YP_002227597.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|207858115|ref|YP_002244766.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|213052194|ref|ZP_03345072.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
 gi|213580306|ref|ZP_03362132.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213648119|ref|ZP_03378172.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213854929|ref|ZP_03383169.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|25285331|pir||AH0846 formate hydrogenlyase chain 2 [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16421398|gb|AAL21732.1| hydrogenase-3, iron-sulfur subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|16503930|emb|CAD05959.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi]
 gi|29138746|gb|AAO70315.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|161365119|gb|ABX68887.1| hypothetical protein SPAB_03546 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|195633759|gb|EDX52173.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197940014|gb|ACH77347.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199603950|gb|EDZ02495.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|205273577|emb|CAR38564.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|205324786|gb|EDZ12625.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205327950|gb|EDZ14714.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205342944|gb|EDZ29708.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205349088|gb|EDZ35719.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206709918|emb|CAR34272.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|261247988|emb|CBG25821.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. D23580]
 gi|267994975|gb|ACY89860.1| hydrogenase-3 iron-sulfur subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301159412|emb|CBW18930.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
 gi|312913870|dbj|BAJ37844.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|320087255|emb|CBY97020.1| Formate hydrogenlyase subunit 2 FHL subunit 2; Hydrogenase-3
          component B [Salmonella enterica subsp. enterica
          serovar Weltevreden str. 2007-60-3289-1]
 gi|321223404|gb|EFX48470.1| Formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322614329|gb|EFY11260.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322621606|gb|EFY18459.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322624467|gb|EFY21300.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322628798|gb|EFY25581.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322633475|gb|EFY30217.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322635949|gb|EFY32657.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322639657|gb|EFY36342.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322646840|gb|EFY43343.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650608|gb|EFY47013.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322654780|gb|EFY51099.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659000|gb|EFY55253.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322664433|gb|EFY60627.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322668318|gb|EFY64475.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673702|gb|EFY69803.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322677763|gb|EFY73826.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322681407|gb|EFY77439.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322683809|gb|EFY79819.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323131203|gb|ADX18633.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 4/74]
 gi|323193802|gb|EFZ79005.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323200272|gb|EFZ85354.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323203225|gb|EFZ88254.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323205528|gb|EFZ90493.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323210039|gb|EFZ94942.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323216342|gb|EGA01069.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323221090|gb|EGA05521.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323226911|gb|EGA11093.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323230805|gb|EGA14923.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323234844|gb|EGA18930.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323238883|gb|EGA22933.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323241583|gb|EGA25614.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323248270|gb|EGA32206.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323251146|gb|EGA35019.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323256029|gb|EGA39767.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323263164|gb|EGA46702.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323264331|gb|EGA47837.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323271158|gb|EGA54586.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|326624583|gb|EGE30928.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
 gi|326628904|gb|EGE35247.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
 gi|332989724|gb|AEF08707.1| hydrogenase-3 iron-sulfur subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 202

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|127511286|ref|YP_001092483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636581|gb|ABO22224.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 215

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C++  CV VCP    +       + +   +C  C  C   CP +A   ++E
Sbjct: 85  SCQQCQNAPCVSVCPTGAAHRDPKTGIVTMDASKCAGCKYCIAACPYNARYINSE 139


>gi|260426978|ref|ZP_05780957.1| respiratory nitrate reductase 2 beta chain [Citreicella sp. SE45]
 gi|260421470|gb|EEX14721.1| respiratory nitrate reductase 2 beta chain [Citreicella sp. SE45]
          Length = 326

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C+  C  +  Y+   +  + I  + C     C   CP   +  + E
Sbjct: 133 CNHCENPACLAACSRNAIYKRQEDGIVLIDQERCRGYRYCVSACPYKKVYFNEE 186


>gi|256828381|ref|YP_003157109.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577557|gb|ACU88693.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 352

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 8/68 (11%)

Query: 3   YVVTEN-------CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           Y V +        C  C    C   C V  F + +         +C+ C  C   CP + 
Sbjct: 92  YSVNDKPVYRKQQCNHCLEPACASACFVGAFVKDKTGAVSHDASKCVGCRYCMIACPFEI 151

Query: 55  IKPDTEPG 62
              +    
Sbjct: 152 PTYEYHDP 159


>gi|257051114|ref|YP_003128947.1| DMSO reductase family type II enzyme, iron- sulfur subunit
           [Halorhabdus utahensis DSM 12940]
 gi|256689877|gb|ACV10214.1| DMSO reductase family type II enzyme, iron- sulfur subunit
           [Halorhabdus utahensis DSM 12940]
          Length = 349

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C H  CVE CP    Y+ E    + +  + C     C   CP   +  
Sbjct: 145 CNHCTHPSCVEACPRKAIYKREEDGIVLVDQERCRGYRYCVEGCPYKKVYY 195


>gi|163759532|ref|ZP_02166617.1| NADH dehydrogenase subunit I [Hoeflea phototrophica DFL-43]
 gi|162283129|gb|EDQ33415.1| NADH dehydrogenase subunit I [Hoeflea phototrophica DFL-43]
          Length = 162

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K   L +  + +  
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKDRLLANGDRWERE 150


>gi|153829757|ref|ZP_01982424.1| iron-sulfur cluster-binding protein [Vibrio cholerae 623-39]
 gi|148874736|gb|EDL72871.1| iron-sulfur cluster-binding protein [Vibrio cholerae 623-39]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 420 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter
           bemidjiensis Bem]
 gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative
           [Geobacter bemidjiensis Bem]
          Length = 636

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           ++    C  C    C+  CP      G+     I  ++C  CG C   CP
Sbjct: 563 HIDPAKCKGC--GSCLRKCPATAIEGGKKTIHVIDQEKCTKCGTCIEACP 610


>gi|126698285|ref|YP_001087182.1| putative reductase [Clostridium difficile 630]
 gi|115249722|emb|CAJ67539.1| putative nitroreductase [Clostridium difficile]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGC--GMCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 IEYNRETFELEP 75


>gi|15803241|ref|NP_289273.1| small subunit of hydrogenase-3, iron-sulfur protein (part of
          formate hydrogenlyase (FHL) complex) [Escherichia coli
          O157:H7 EDL933]
 gi|15832834|ref|NP_311607.1| formate hydrogenlyase subunit-7 component B [Escherichia coli
          O157:H7 str. Sakai]
 gi|82778090|ref|YP_404439.1| small subunit of hydrogenase-3, iron-sulfur protein [Shigella
          dysenteriae Sd197]
 gi|168749951|ref|ZP_02774973.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4113]
 gi|168755469|ref|ZP_02780476.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4401]
 gi|168762877|ref|ZP_02787884.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4501]
 gi|168768815|ref|ZP_02793822.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4486]
 gi|168774744|ref|ZP_02799751.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4196]
 gi|168778706|ref|ZP_02803713.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4076]
 gi|168787979|ref|ZP_02812986.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC869]
 gi|168800195|ref|ZP_02825202.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC508]
 gi|191166789|ref|ZP_03028615.1| formate hydrogenlyase, subunit B [Escherichia coli B7A]
 gi|193065023|ref|ZP_03046098.1| formate hydrogenlyase, subunit B [Escherichia coli E22]
 gi|193069629|ref|ZP_03050581.1| formate hydrogenlyase, subunit B [Escherichia coli E110019]
 gi|194427877|ref|ZP_03060423.1| formate hydrogenlyase, subunit B [Escherichia coli B171]
 gi|195938474|ref|ZP_03083856.1| formate hydrogenlyase subunit-7 component B [Escherichia coli
          O157:H7 str. EC4024]
 gi|208808306|ref|ZP_03250643.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4206]
 gi|208814125|ref|ZP_03255454.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4045]
 gi|208820193|ref|ZP_03260513.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4042]
 gi|209399068|ref|YP_002272187.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4115]
 gi|209920163|ref|YP_002294247.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|217327352|ref|ZP_03443435.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          TW14588]
 gi|218555268|ref|YP_002388181.1| hydrogenase 3, Fe-S subunit [Escherichia coli IAI1]
 gi|218696318|ref|YP_002403985.1| hydrogenase 3, Fe-S subunit [Escherichia coli 55989]
 gi|254794664|ref|YP_003079501.1| hydrogenase 3, Fe-S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|260845367|ref|YP_003223145.1| hydrogenase 3, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|261226018|ref|ZP_05940299.1| hydrogenase 3, Fe-S subunit [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261256724|ref|ZP_05949257.1| hydrogenase 3, Fe-S subunit [Escherichia coli O157:H7 str.
          FRIK966]
 gi|291284051|ref|YP_003500869.1| Formate hydrogenlyase, subunit B [Escherichia coli O55:H7 str.
          CB9615]
 gi|300815872|ref|ZP_07096096.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300820499|ref|ZP_07100650.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300922242|ref|ZP_07138368.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|301326241|ref|ZP_07219624.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|307312853|ref|ZP_07592483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|309795184|ref|ZP_07689603.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|331654201|ref|ZP_08355201.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli M718]
 gi|331669457|ref|ZP_08370303.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA271]
 gi|331678698|ref|ZP_08379372.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H591]
 gi|12517172|gb|AAG57831.1|AE005500_10 probable small subunit of hydrogenase-3, iron-sulfur protein
          (part of formate hydrogenlyase (FHL) complex)
          [Escherichia coli O157:H7 str. EDL933]
 gi|13363051|dbj|BAB37003.1| formate hydrogenlyase subunit-7 component B [Escherichia coli
          O157:H7 str. Sakai]
 gi|81242238|gb|ABB62948.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          [Shigella dysenteriae Sd197]
 gi|187769642|gb|EDU33486.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4196]
 gi|188015781|gb|EDU53903.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4113]
 gi|189003372|gb|EDU72358.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4076]
 gi|189357280|gb|EDU75699.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4401]
 gi|189362046|gb|EDU80465.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4486]
 gi|189366874|gb|EDU85290.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4501]
 gi|189372240|gb|EDU90656.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC869]
 gi|189377473|gb|EDU95889.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC508]
 gi|190903160|gb|EDV62883.1| formate hydrogenlyase, subunit B [Escherichia coli B7A]
 gi|192927320|gb|EDV81939.1| formate hydrogenlyase, subunit B [Escherichia coli E22]
 gi|192956992|gb|EDV87443.1| formate hydrogenlyase, subunit B [Escherichia coli E110019]
 gi|194414110|gb|EDX30386.1| formate hydrogenlyase, subunit B [Escherichia coli B171]
 gi|208728107|gb|EDZ77708.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4206]
 gi|208735402|gb|EDZ84089.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4045]
 gi|208740316|gb|EDZ87998.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4042]
 gi|209160468|gb|ACI37901.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4115]
 gi|209761858|gb|ACI79241.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209761860|gb|ACI79242.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209761862|gb|ACI79243.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209761864|gb|ACI79244.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209761866|gb|ACI79245.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209913422|dbj|BAG78496.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|217319719|gb|EEC28144.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          TW14588]
 gi|218353050|emb|CAU98875.1| hydrogenase 3, Fe-S subunit [Escherichia coli 55989]
 gi|218362036|emb|CAQ99643.1| hydrogenase 3, Fe-S subunit [Escherichia coli IAI1]
 gi|254594064|gb|ACT73425.1| hydrogenase 3, Fe-S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|257760514|dbj|BAI32011.1| hydrogenase 3, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|290763924|gb|ADD57885.1| Formate hydrogenlyase, subunit B [Escherichia coli O55:H7 str.
          CB9615]
 gi|300421372|gb|EFK04683.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300526763|gb|EFK47832.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300531801|gb|EFK52863.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300847086|gb|EFK74846.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|306907288|gb|EFN37794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|308121155|gb|EFO58417.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|315062000|gb|ADT76327.1| hydrogenase 3, Fe-S subunit [Escherichia coli W]
 gi|320189056|gb|EFW63715.1| Formate hydrogenlyase subunit 2 [Escherichia coli O157:H7 str.
          EC1212]
 gi|320202374|gb|EFW76944.1| Formate hydrogenlyase subunit 2 [Escherichia coli EC4100B]
 gi|320640367|gb|EFX09906.1| Formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          G5101]
 gi|320645914|gb|EFX14895.1| Formate hydrogenlyase, subunit B [Escherichia coli O157:H- str.
          493-89]
 gi|320651214|gb|EFX19649.1| Formate hydrogenlyase, subunit B [Escherichia coli O157:H- str. H
          2687]
 gi|320656764|gb|EFX24652.1| Formate hydrogenlyase, subunit B [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320662307|gb|EFX29704.1| Formate hydrogenlyase, subunit B [Escherichia coli O55:H7 str.
          USDA 5905]
 gi|320667358|gb|EFX34316.1| Formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          LSU-61]
 gi|323159848|gb|EFZ45819.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323377417|gb|ADX49685.1| small subunit of hydrogenase-3, iron-sulfur protein [Escherichia
          coli KO11]
 gi|323946395|gb|EGB42423.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324017037|gb|EGB86256.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|326339204|gb|EGD63019.1| Formate hydrogenlyase subunit 2 [Escherichia coli O157:H7 str.
          1044]
 gi|326342913|gb|EGD66681.1| Formate hydrogenlyase subunit 2 [Escherichia coli O157:H7 str.
          1125]
 gi|331047583|gb|EGI19660.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli M718]
 gi|331063125|gb|EGI35038.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA271]
 gi|331073528|gb|EGI44849.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H591]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|150018615|ref|YP_001310869.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
 gi|149905080|gb|ABR35913.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
          Length = 461

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          +  E C  C    CVEVCPV+     +     I  D C+ CG C   C   
Sbjct: 8  IDKELCTGC--QQCVEVCPVNAIQGKKGQPQNIDYDVCVSCGQCIQVCNSY 56


>gi|150391494|ref|YP_001321543.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149951356|gb|ABR49884.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +  +C  C+   C+++CP     + +  + I+ D+C  CG+CE  CP   I        +
Sbjct: 62  IPAHCRHCQEAFCLQLCPTKAITQEKKVVVINDDKCTGCGICEQGCPYGVITMAFYTKDQ 121

Query: 65  L 65
            
Sbjct: 122 K 122


>gi|332799818|ref|YP_004461317.1| RnfABCDGE type electron transport complex subunit B
           [Tepidanaerobacter sp. Re1]
 gi|332697553|gb|AEE92010.1| electron transport complex, RnfABCDGE type, B subunit
           [Tepidanaerobacter sp. Re1]
          Length = 345

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
             ++ E CI C  T C + CPV+        +  +  D CI CG+C+ +C  DAIK 
Sbjct: 273 AVIIEEKCIGC--TLCAKNCPVNAISGEVKKVHKVDQDICIGCGICQEKCRKDAIKM 327



 Score = 40.7 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C +VCP D  +   N  AI  ++C +C +C  +CP   I
Sbjct: 219 CIACK--QCEKVCPFDAIHVNNNVAAIDYEKCRNCMLCVEKCPTGTI 263



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C  C    CVE CP       +       I  ++CI C +C   CPV+AI  + +   
Sbjct: 246 EKCRNC--MLCVEKCPTGTITSIFAERKKAVIIEEKCIGCTLCAKNCPVNAISGEVKKVH 303

Query: 64  E 64
           +
Sbjct: 304 K 304



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            CI     DC +VCPV      EN L  ++  +CI C +C  ECP D +    E
Sbjct: 143 ACIG--FGDCKKVCPVGAITMSENGLPNVNEQKCIGCSLCVQECPKDVLALIPE 194


>gi|303246395|ref|ZP_07332674.1| nitroreductase [Desulfovibrio fructosovorans JJ]
 gi|302492105|gb|EFL51980.1| nitroreductase [Desulfovibrio fructosovorans JJ]
          Length = 301

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  E C+ C    C  VCP           ++  + CI CG C   CP +A+        
Sbjct: 8  IDAEACLGC--GACAAVCPSGVLGFDGRKASVVAEGCIGCGHCAALCPAEAVTVSAGENW 65


>gi|256811073|ref|YP_003128442.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           fervens AG86]
 gi|256794273|gb|ACV24942.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           fervens AG86]
          Length = 620

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V  E C  C    C EVC V+           + + CI CG C   CP +A
Sbjct: 490 VDREKCNGC--GRCAEVCKVEAIDVRGETSYTNYNVCIGCGKCIKNCPNEA 538


>gi|225405649|ref|ZP_03760838.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
 gi|225042823|gb|EEG53069.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +YV+  + C  C  T C   CP        +N   I  ++CI CG C  +C   AI 
Sbjct: 162 SYVIDRDKCRGC--TLCARTCPAGAIVGSVKNPHVIDLNKCIKCGACMEKCKFGAIY 216


>gi|218130044|ref|ZP_03458848.1| hypothetical protein BACEGG_01629 [Bacteroides eggerthii DSM 20697]
 gi|217987764|gb|EEC54091.1| hypothetical protein BACEGG_01629 [Bacteroides eggerthii DSM 20697]
          Length = 277

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TE C  C +  C   CP     +G+       ++CI C  C   CP  A   DT 
Sbjct: 205 VDTELCNHCGY--CAVHCPASAIKKGDECYT-DAEKCIRCCACVKGCPQKARTFDTP 258



 Score = 33.8 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           Y   E CI C    CV+ CP         F 
Sbjct: 232 YTDAEKCIRC--CACVKGCPQKARTFDTPFA 260


>gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
 gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
          Length = 624

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C    C   CP      E      I  ++C+ CG+C  +C  +AI
Sbjct: 569 YVINPELCKSCSL--CARACPQGAISGERGKPYVIDQEKCVKCGICFEKCKFNAI 621


>gi|212211971|ref|YP_002302907.1| electron transport complex protein [Coxiella burnetii CbuG_Q212]
 gi|212010381|gb|ACJ17762.1| electron transport complex protein [Coxiella burnetii CbuG_Q212]
          Length = 206

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  + CI C  T C++ CP D      +    +  D C  C +C P CPVD I     
Sbjct: 81  AFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCIDMKII 138

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L    K   + A QW +   KK
Sbjct: 139 APLTPHEK--KQKAQQWRSRYEKK 160


>gi|168230913|ref|ZP_02655971.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168235884|ref|ZP_02660942.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|168242582|ref|ZP_02667514.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|194442481|ref|YP_002042094.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194451115|ref|YP_002046813.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194471624|ref|ZP_03077608.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194735766|ref|YP_002115805.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197247841|ref|YP_002147750.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197265508|ref|ZP_03165582.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|204928192|ref|ZP_03219392.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|238909619|ref|ZP_04653456.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|194401144|gb|ACF61366.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194409419|gb|ACF69638.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194457988|gb|EDX46827.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194711268|gb|ACF90489.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197211544|gb|ACH48941.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197243763|gb|EDY26383.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197290921|gb|EDY30275.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|204322514|gb|EDZ07711.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205334452|gb|EDZ21216.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205338150|gb|EDZ24914.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
          Length = 202

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|91201718|emb|CAJ74778.1| strongly similar to ferredoxin [Candidatus Kuenenia
          stuttgartiensis]
          Length = 56

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + E CI C    C   CPV+   E  +   I    C DCG C   CPVDAI
Sbjct: 1  MAHSINEECINC--AACESECPVEAISEAGDVRVIDESTCTDCGNCVSVCPVDAI 53


>gi|90407574|ref|ZP_01215755.1| electron transport protein [Psychromonas sp. CNPT3]
 gi|90311277|gb|EAS39381.1| electron transport protein [Psychromonas sp. CNPT3]
          Length = 176

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C + CP +     +N + +  + CI C  C   CP  A+
Sbjct: 57  CRQCDDAPCAKACPNNAIISEDNHIKVIQELCIGCKSCVVACPYGAM 103


>gi|74313291|ref|YP_311710.1| small subunit of hydrogenase-3, iron-sulfur protein [Shigella
          sonnei Ss046]
 gi|73856768|gb|AAZ89475.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          [Shigella sonnei Ss046]
 gi|323167101|gb|EFZ52819.1| hydrogenase-4 component A [Shigella sonnei 53G]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRIDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|809680|emb|CAA35547.1| hycB [Escherichia coli]
 gi|1093495|prf||2104213B hycB gene
          Length = 203

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|90422214|ref|YP_530584.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB18]
 gi|90104228|gb|ABD86265.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB18]
          Length = 606

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +VT  C  C    C+ + CP     D ++EG + + I P  CI C +C   C VD IK  
Sbjct: 544 IVTGQCTAC--QSCMNLGCPALTWSDQWFEGRHRVKIDPALCIGCTLCAQVCTVDCIKIA 601

Query: 59  TE 60
             
Sbjct: 602 AP 603


>gi|330973101|gb|EGH73167.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 291

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCIAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|304314084|ref|YP_003849231.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
 gi|302587543|gb|ADL57918.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
          Length = 162

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C  C+   C  VCP D   +      + P+ CI CG+C   CP  A+  + 
Sbjct: 44 CQQCEDAPCRTVCPTDAIQDE-----VDPERCIGCGLCMLVCPFGAVVMED 89


>gi|270158204|ref|ZP_06186861.1| electron transport complex family protein [Legionella longbeachae
           D-4968]
 gi|289163539|ref|YP_003453677.1| Electron transport complex protein [Legionella longbeachae NSW150]
 gi|269990229|gb|EEZ96483.1| electron transport complex family protein [Legionella longbeachae
           D-4968]
 gi|288856712|emb|CBJ10523.1| Electron transport complex protein [Legionella longbeachae NSW150]
          Length = 204

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ E  CI C  T C++ CPVD     G+   A+   EC  CG+C   CPVD I+     
Sbjct: 78  VIREAECIGC--TKCIKACPVDAIIGSGKLMHAVMTHECTGCGLCVAPCPVDCIEMVESS 135

Query: 62  GLELWLKINS 71
             E    +  
Sbjct: 136 AAEYDKDLAR 145


>gi|260888766|ref|ZP_05900029.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC
           35185]
 gi|330839840|ref|YP_004414420.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Selenomonas sputigena ATCC 35185]
 gi|260861519|gb|EEX76019.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329747604|gb|AEC00961.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Selenomonas sputigena ATCC 35185]
          Length = 209

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + +TE+CI C    C  VCP  C  EGE    I    C+ CG+C   CPV+AI+      
Sbjct: 152 FRITEDCIGC--GTCAAVCPQQCIAEGEP-YKIAAAHCLHCGLCFESCPVEAIERLDSEA 208

Query: 63  L 63
            
Sbjct: 209 H 209


>gi|255502230|gb|ACU11595.1| HfsB [Thermoanaerobacterium saccharolyticum]
          Length = 572

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV      +    I    CI CG C   CP +A
Sbjct: 10 NCRNCYK--CIRYCPVKAIKVNDEQAEIIEYRCIACGRCLNICPQNA 54


>gi|227883743|ref|ZP_04001548.1| electron transport protein ysaA [Escherichia coli 83972]
 gi|300920461|ref|ZP_07136893.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300971467|ref|ZP_07171470.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301047069|ref|ZP_07194171.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|331659889|ref|ZP_08360827.1| putative electron transport protein YsaA [Escherichia coli TA206]
 gi|227839323|gb|EEJ49789.1| electron transport protein ysaA [Escherichia coli 83972]
 gi|281180618|dbj|BAI56948.1| putative electron transport protein [Escherichia coli SE15]
 gi|284923605|emb|CBG36702.1| putative electron-transport protein [Escherichia coli 042]
 gi|300301017|gb|EFJ57402.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300411238|gb|EFJ94776.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|300412526|gb|EFJ95836.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|307555678|gb|ADN48453.1| putative electron transport protein YsaA [Escherichia coli ABU
           83972]
 gi|315294101|gb|EFU53453.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|315300154|gb|EFU59392.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|320193914|gb|EFW68547.1| Electron transport protein HydN [Escherichia coli WV_060327]
 gi|330909637|gb|EGH38151.1| electron transport protein HydN [Escherichia coli AA86]
 gi|331053104|gb|EGI25137.1| putative electron transport protein YsaA [Escherichia coli TA206]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|227828734|ref|YP_002830514.1| hypothetical protein M1425_2495 [Sulfolobus islandicus M.14.25]
 gi|227460530|gb|ACP39216.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25]
          Length = 470

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ CK  DC   CPV       +F+        +CI  G C   CP + I      
Sbjct: 399 DPKKCLTCKTVDCAYACPVGLTDMRASFIKKGEFKSFKCIGVGDCLEVCPYNNITFYDAR 458

Query: 62  GLEL 65
               
Sbjct: 459 SWIK 462


>gi|239813114|ref|YP_002942024.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax
          paradoxus S110]
 gi|239799691|gb|ACS16758.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax
          paradoxus S110]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CPV+     +N   +  D C  C  C   CP  +I  
Sbjct: 15 IDPEICIRCN--TCEATCPVNAITHDDNNYVVRADICNGCMACISPCPTGSIDN 66


>gi|163816347|ref|ZP_02207713.1| hypothetical protein COPEUT_02535 [Coprococcus eutactus ATCC 27759]
 gi|158448344|gb|EDP25339.1| hypothetical protein COPEUT_02535 [Coprococcus eutactus ATCC 27759]
          Length = 580

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 5   VTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + E C  C    C++  CP     + +  + I    C  CG+C   C  DAI+ + 
Sbjct: 527 IPEKCKKC--GMCLKPGCPA-VIRQEDGTIRIDDTLCTGCGLCMKRCKFDAIEREE 579


>gi|159038685|ref|YP_001537938.1| nitrate reductase, beta subunit [Salinispora arenicola CNS-205]
 gi|157917520|gb|ABV98947.1| nitrate reductase, beta subunit [Salinispora arenicola CNS-205]
          Length = 576

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKRSEDGIVLVDQDRCRGWRMCITGCPYKKVYF 232


>gi|226942608|ref|YP_002797681.1| iron-sulfur cluster-binding protein CooF [Azotobacter vinelandii
           DJ]
 gi|226717535|gb|ACO76706.1| iron-sulfur cluster-binding protein CooF [Azotobacter vinelandii
           DJ]
          Length = 185

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y     C  C    CV  CP                D+CI C +C   CP   +  D
Sbjct: 53  AYSYPSRCQHCSDAACVTACPTGAMQRDGCDAVFSDADKCIGCWMCVVVCPFGGVSAD 110


>gi|332702625|ref|ZP_08422713.1| hypothetical protein Desaf_1481 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552774|gb|EGJ49818.1| hypothetical protein Desaf_1481 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 335

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C++  C  +CP        + +  I    C+    C   CP  
Sbjct: 121 IPRRCMHCQNAPCANLCPFGACSTQADGIVRIDSGVCLGGAKCRQVCPWH 170


>gi|330966554|gb|EGH66814.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 310

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+  
Sbjct: 103 AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMH 158


>gi|301020224|ref|ZP_07184346.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300398862|gb|EFJ82400.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|289449986|ref|YP_003475788.1| electron transport complex, RnfABCDGE type subunit B [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184533|gb|ADC90958.1| electron transport complex, RnfABCDGE type, B subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 283

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    CV  CP       +N   I   +C  C  C  +CP  AI P   P    
Sbjct: 227 ACIAC--GACVRSCPQKAIEIVDNHAVIDITKCTGCMTCVNKCPTSAILPQLIPAAAE 282



 Score = 38.4 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C    DC   CP D     +N   I  D C  C  C   CP   IK 
Sbjct: 152 GCLGLGDCAAACPFDAIRVIDNLAVIRSDMCKGCKKCVSVCPQKIIKM 199


>gi|239624842|ref|ZP_04667873.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521228|gb|EEQ61094.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47FAA]
          Length = 215

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIKP 57
           M Y +  +C  C    CV+ CP    Y+ + +  +  +E   CI CG C+  CP +A + 
Sbjct: 78  MRYNMNISCNHCSKPACVDACPTGRIYKEDTYGIVLANEEIPCISCGRCQKACPWEAPQF 137

Query: 58  DT 59
            T
Sbjct: 138 YT 139


>gi|224369367|ref|YP_002603531.1| HdrL2 [Desulfobacterium autotrophicum HRM2]
 gi|223692084|gb|ACN15367.1| HdrL2 [Desulfobacterium autotrophicum HRM2]
          Length = 1140

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            +Y+  + C  CK   C+ +CP       E      ++   C  CG C   CP  A +   
Sbjct: 1063 SYIDPDICAGCK--TCIGLCPYTAISFDELHGVSVVNEALCKGCGSCAGFCPSGAAQVRH 1120

Query: 60   EPGLELWLKI 69
                +++ ++
Sbjct: 1121 FNEKQMFAEL 1130


>gi|222529000|ref|YP_002572882.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455847|gb|ACM60109.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 598

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + +NC+ CK    V  CP     E  N + I    C  CG+C+  CP  AI+   E
Sbjct: 540 FKINQNCLKCKVCLNVTGCPAIDEDENGN-IFIDSVLCKGCGLCKNFCPYYAIEKVME 596


>gi|324111908|gb|EGC05888.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
          B253]
          Length = 138

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C  VCPV         + +    CI C  C   CP  A++   +      +
Sbjct: 38 ACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQESQVQAI 97

Query: 68 K 68
          K
Sbjct: 98 K 98


>gi|331685236|ref|ZP_08385822.1| putative electron transport protein YsaA [Escherichia coli H299]
 gi|331077607|gb|EGI48819.1| putative electron transport protein YsaA [Escherichia coli H299]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|284922649|emb|CBG35737.1| electron transport protein [Escherichia coli 042]
          Length = 175

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 58  CCQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 104


>gi|283786726|ref|YP_003366591.1| formate hydrogenlyase subunit 2 [Citrobacter rodentium ICC168]
 gi|282950180|emb|CBG89816.1| formate hydrogenlyase subunit 2 [Citrobacter rodentium ICC168]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|213426145|ref|ZP_03358895.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E02-1180]
 gi|289810469|ref|ZP_06541098.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 161

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 10 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 58


>gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 626

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  + C  C    C   CP +    E      I+ ++C+ CG+C  +CP  AI
Sbjct: 571 YVINPDICKGC--GLCARSCPQNAITGERGKPYTINQEKCVKCGLCASKCPFKAI 623



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            I+PD C  CG+C   CP +AI  +
Sbjct: 560 CPSGMCT-AFKKYVINPDICKGCGLCARSCPQNAITGE 596


>gi|163868365|ref|YP_001609574.1| NADH dehydrogenase subunit I [Bartonella tribocorum CIP 105476]
 gi|240850591|ref|YP_002971991.1| NADH dehydrogenase I subunit I [Bartonella grahamii as4aup]
 gi|189030923|sp|A9IUN3|NUOI_BART1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|161018021|emb|CAK01579.1| NADH dehydrogenase I chain I [Bartonella tribocorum CIP 105476]
 gi|240267714|gb|ACS51302.1| NADH dehydrogenase I subunit I [Bartonella grahamii as4aup]
          Length = 163

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPV+A
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKEKLLMNGDRWERE 151


>gi|154497736|ref|ZP_02036114.1| hypothetical protein BACCAP_01712 [Bacteroides capillosus ATCC
           29799]
 gi|150273234|gb|EDN00379.1| hypothetical protein BACCAP_01712 [Bacteroides capillosus ATCC
           29799]
          Length = 376

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             V  + C  C    C + C  D  +    +    I  D C+ CG C   C  DAI    
Sbjct: 190 PVVAEDKCRKC--HACAKSCGQDAIFFDGTDGKARIDHDRCVGCGRCLGACNFDAISNPE 247

Query: 60  EPGLELWLKINSEYAT 75
                +     +EYA 
Sbjct: 248 SNTNTILDYKMAEYAK 263


>gi|149184627|ref|ZP_01862945.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21]
 gi|148831947|gb|EDL50380.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21]
          Length = 161

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDA+
Sbjct: 59  EERCIACKL--CEAVCPAQAITIESEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAV 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  K +
Sbjct: 117 V--EGPNFEYATETREEL------LYDKAKLLANGDKWE 147


>gi|254976912|ref|ZP_05273384.1| electron transport protein [Clostridium difficile QCD-66c26]
 gi|255094298|ref|ZP_05323776.1| electron transport protein [Clostridium difficile CIP 107932]
 gi|255102480|ref|ZP_05331457.1| electron transport protein [Clostridium difficile QCD-63q42]
 gi|255308385|ref|ZP_05352556.1| electron transport protein [Clostridium difficile ATCC 43255]
 gi|255316052|ref|ZP_05357635.1| electron transport protein [Clostridium difficile QCD-76w55]
 gi|255518709|ref|ZP_05386385.1| electron transport protein [Clostridium difficile QCD-97b34]
 gi|255651831|ref|ZP_05398733.1| electron transport protein [Clostridium difficile QCD-37x79]
 gi|255657271|ref|ZP_05402680.1| electron transport protein [Clostridium difficile QCD-23m63]
 gi|260684857|ref|YP_003216142.1| electron transport protein [Clostridium difficile CD196]
 gi|260688515|ref|YP_003219649.1| electron transport protein [Clostridium difficile R20291]
 gi|296451876|ref|ZP_06893594.1| electron transporter HydN [Clostridium difficile NAP08]
 gi|296879728|ref|ZP_06903703.1| electron transporter HydN [Clostridium difficile NAP07]
 gi|306521618|ref|ZP_07407965.1| electron transport protein [Clostridium difficile QCD-32g58]
 gi|260211020|emb|CBA66338.1| electron transport protein [Clostridium difficile CD196]
 gi|260214532|emb|CBE07053.1| electron transport protein [Clostridium difficile R20291]
 gi|296259293|gb|EFH06170.1| electron transporter HydN [Clostridium difficile NAP08]
 gi|296429317|gb|EFH15189.1| electron transporter HydN [Clostridium difficile NAP07]
          Length = 171

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C + CP        N + I+ + CI C  C   CP+ AI
Sbjct: 59  CRHCEDAPCAKACPNGGIVRVGNTIKINEENCIGCKTCMLACPIGAI 105


>gi|73667613|ref|YP_303628.1| indolepyruvate oxidoreductase subunit [Methanosarcina barkeri str.
           Fusaro]
 gi|72394775|gb|AAZ69048.1| indolepyruvate oxidoreductase, subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 600

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 2   TYVV-TENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            YVV  E C  CK   CV+  CP   F E      I    C  CGVC   C  DAI+
Sbjct: 543 PYVVDPEKCEGCK--QCVKFGCPAIEFNENNECAVI-TALCSGCGVCAQICKFDAIQ 596


>gi|83311878|ref|YP_422142.1| NADH dehydrogenase subunit I [Magnetospirillum magneticum AMB-1]
 gi|115502533|sp|Q2W3J2|NUOI_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|82946719|dbj|BAE51583.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit [Magnetospirillum magneticum AMB-1]
          Length = 162

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      +   +CI CG+C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAICPAQAITIEPEPRDDGSRRARRYDLDMTKCIYCGLCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +  +E       +  K + L +  + +  
Sbjct: 118 V--EGPNFEYATETRAEL------MYNKSKLLANGDRWEAE 150


>gi|49475650|ref|YP_033691.1| NADH dehydrogenase subunit I [Bartonella henselae str. Houston-1]
 gi|81696159|sp|Q6G396|NUOI_BARHE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49238457|emb|CAF27685.1| NADH dehydrogenase I, I subunit [Bartonella henselae str.
           Houston-1]
          Length = 163

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPV+A
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K++ L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YYDKEKLLMNGDRWERE 151


>gi|238792134|ref|ZP_04635769.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC
           29909]
 gi|238728371|gb|EEQ19890.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC
           29909]
          Length = 207

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIEM 164


>gi|157157371|ref|YP_001465049.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli E24377A]
 gi|300925653|ref|ZP_07141516.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|301328345|ref|ZP_07221444.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|307314632|ref|ZP_07594232.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|157079401|gb|ABV19109.1| 4Fe-4S binding domain protein [Escherichia coli E24377A]
 gi|300418241|gb|EFK01552.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300845206|gb|EFK72966.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|306905845|gb|EFN36369.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|315062860|gb|ADT77187.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli W]
 gi|323376549|gb|ADX48817.1| hypothetical protein EKO11_0153 [Escherichia coli KO11]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|15804119|ref|NP_290158.1| hypothetical protein Z4998 [Escherichia coli O157:H7 EDL933]
 gi|15833710|ref|NP_312483.1| hypothetical protein ECs4456 [Escherichia coli O157:H7 str. Sakai]
 gi|82545944|ref|YP_409891.1| hypothetical protein SBO_3581 [Shigella boydii Sb227]
 gi|168746879|ref|ZP_02771901.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753395|ref|ZP_02778402.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759667|ref|ZP_02784674.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168765990|ref|ZP_02790997.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772463|ref|ZP_02797470.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779726|ref|ZP_02804733.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785447|ref|ZP_02810454.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC869]
 gi|168797413|ref|ZP_02822420.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC508]
 gi|191165250|ref|ZP_03027093.1| 4Fe-4S binding domain protein [Escherichia coli B7A]
 gi|194431034|ref|ZP_03063327.1| 4Fe-4S binding domain protein [Shigella dysenteriae 1012]
 gi|195935105|ref|ZP_03080487.1| hypothetical protein EscherichcoliO157_01395 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807546|ref|ZP_03249883.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814607|ref|ZP_03255936.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819373|ref|ZP_03259693.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397848|ref|YP_002273059.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209921040|ref|YP_002295124.1| putative electron transport protein [Escherichia coli SE11]
 gi|217325836|ref|ZP_03441920.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218697290|ref|YP_002404957.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli 55989]
 gi|254795530|ref|YP_003080367.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O157:H7 str. TW14359]
 gi|256020921|ref|ZP_05434786.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component [Shigella
           sp. D9]
 gi|260858031|ref|YP_003231922.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O26:H11 str. 11368]
 gi|260870304|ref|YP_003236706.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O111:H- str. 11128]
 gi|261224892|ref|ZP_05939173.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254209|ref|ZP_05946742.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291284950|ref|YP_003501768.1| 4Fe-4S binding domain protein [Escherichia coli O55:H7 str. CB9615]
 gi|300815195|ref|ZP_07095420.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300822022|ref|ZP_07102165.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|309797567|ref|ZP_07691956.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|332282143|ref|ZP_08394556.1| hydrogenase 4Fe-4S ferredoxin-type component [Shigella sp. D9]
 gi|12518314|gb|AAG58722.1|AE005584_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363931|dbj|BAB37879.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|81247355|gb|ABB68063.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187771623|gb|EDU35467.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018443|gb|EDU56565.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002389|gb|EDU71375.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358874|gb|EDU77293.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364728|gb|EDU83147.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369477|gb|EDU87893.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374644|gb|EDU93060.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC869]
 gi|189379940|gb|EDU98356.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC508]
 gi|190904652|gb|EDV64358.1| 4Fe-4S binding domain protein [Escherichia coli B7A]
 gi|194420489|gb|EDX36565.1| 4Fe-4S binding domain protein [Shigella dysenteriae 1012]
 gi|208727347|gb|EDZ76948.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735884|gb|EDZ84571.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739496|gb|EDZ87178.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159248|gb|ACI36681.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209755058|gb|ACI75841.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209755060|gb|ACI75842.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209755062|gb|ACI75843.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209755064|gb|ACI75844.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209755066|gb|ACI75845.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209914299|dbj|BAG79373.1| putative electron transport protein [Escherichia coli SE11]
 gi|217322057|gb|EEC30481.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354022|emb|CAV00522.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli 55989]
 gi|254594930|gb|ACT74291.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O157:H7 str. TW14359]
 gi|257756680|dbj|BAI28182.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O26:H11 str. 11368]
 gi|257766660|dbj|BAI38155.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O111:H- str. 11128]
 gi|290764823|gb|ADD58784.1| 4Fe-4S binding domain protein [Escherichia coli O55:H7 str. CB9615]
 gi|300525385|gb|EFK46454.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300532087|gb|EFK53149.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|308118837|gb|EFO56099.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|320175867|gb|EFW50947.1| Electron transport protein HydN [Shigella dysenteriae CDC 74-1112]
 gi|320178126|gb|EFW53104.1| Electron transport protein HydN [Shigella boydii ATCC 9905]
 gi|320187730|gb|EFW62405.1| Electron transport protein HydN [Shigella flexneri CDC 796-83]
 gi|320191370|gb|EFW66020.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639894|gb|EFX09488.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. G5101]
 gi|320645057|gb|EFX14081.1| 4Fe-4S binding domain protein [Escherichia coli O157:H- str.
           493-89]
 gi|320650324|gb|EFX18807.1| 4Fe-4S binding domain protein [Escherichia coli O157:H- str. H
           2687]
 gi|320655898|gb|EFX23821.1| 4Fe-4S binding domain protein [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661679|gb|EFX29094.1| 4Fe-4S binding domain protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666703|gb|EFX33686.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323155476|gb|EFZ41656.1| iron-sulfur protein [Escherichia coli EPECa14]
 gi|323174232|gb|EFZ59860.1| iron-sulfur protein [Escherichia coli LT-68]
 gi|323179462|gb|EFZ65029.1| iron-sulfur protein [Escherichia coli 1180]
 gi|323939526|gb|EGB35734.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323944529|gb|EGB40600.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324017903|gb|EGB87122.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|324116547|gb|EGC10464.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|326337422|gb|EGD61257.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           1044]
 gi|326339947|gb|EGD63754.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           1125]
 gi|332084535|gb|EGI89730.1| iron-sulfur protein [Shigella dysenteriae 155-74]
 gi|332089497|gb|EGI94601.1| iron-sulfur protein [Shigella boydii 3594-74]
 gi|332104495|gb|EGJ07841.1| hydrogenase 4Fe-4S ferredoxin-type component [Shigella sp. D9]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|148824347|ref|YP_001289101.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis F11]
 gi|253800187|ref|YP_003033188.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           1435]
 gi|254365778|ref|ZP_04981823.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis str. Haarlem]
 gi|289555426|ref|ZP_06444636.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           605]
 gi|289746962|ref|ZP_06506340.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           02_1987]
 gi|298526627|ref|ZP_07014036.1| NADH-quinone oxidoreductase subunit I [Mycobacterium tuberculosis
           94_M4241A]
 gi|134151291|gb|EBA43336.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis str. Haarlem]
 gi|148722874|gb|ABR07499.1| NADH dehydrogenase I chain I nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis F11]
 gi|253321690|gb|ACT26293.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           1435]
 gi|289440058|gb|EFD22551.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           605]
 gi|289687490|gb|EFD54978.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           02_1987]
 gi|298496421|gb|EFI31715.1| NADH-quinone oxidoreductase subunit I [Mycobacterium tuberculosis
           94_M4241A]
 gi|328459924|gb|AEB05347.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           4207]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 86  EKCIGCEL--CAWACPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEAC 143

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 144 PTRALTM 150


>gi|15679729|ref|NP_276847.1| formate hydrogenlyase, iron-sulfur subunit I [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622868|gb|AAB86207.1| formate hydrogenlyase, iron-sulfur subunit I [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 167

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C  C+   C  VCP D   +      + P+ CI CG+C   CP  A+  + 
Sbjct: 46 CQQCEDAPCRTVCPTDAIDDE-----VDPERCIGCGLCMVVCPFGAVVMED 91


>gi|219670400|ref|YP_002460835.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540660|gb|ACL22399.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           V   C+ C +  C+++CP     +       I  + C     C   CP 
Sbjct: 127 VPRRCMHCDNPTCLKLCPFSAISKESTGAVSIDDEVCFGGAKCRDVCPW 175


>gi|331010114|gb|EGH90170.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|323704595|ref|ZP_08116173.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536057|gb|EGB25830.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 289

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  E CI C    C  +C  D   +      ++P  C  CG+C  +CP  AIK   E 
Sbjct: 61  ALIDEEKCIKC--GLCETLCRFDAISD----YKVNPYYCEGCGLCSYKCPNGAIKMIEEN 114

Query: 62  GLELWLKINSE-----YATQWPN 79
             E+ +  N +     YA  +P 
Sbjct: 115 TGEIIVGENKKGEKIIYAELFPG 137


>gi|291166809|gb|EFE28855.1| iron-sulfur cluster-binding protein [Filifactor alocis ATCC 35896]
          Length = 288

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + TE C  CK   CV  CPV+   + +    +   P  CI C  C  +CP  A+  
Sbjct: 209 INTEKCTGCK--RCVAACPVNMFAYIDNTIQMVRDPKYCILCAECYHQCPAKAVVH 262


>gi|257064487|ref|YP_003144159.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792140|gb|ACV22810.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 206

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           NC  C +  C+ VCP     + E+ +  +  + CI C  C   CP D  +   + 
Sbjct: 65  NCQHCANPSCLTVCPTGATQQREDGIVWVDTELCIGCDSCINACPYDVRRHLADD 119


>gi|213620807|ref|ZP_03373590.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 232

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|148976171|ref|ZP_01812914.1| iron-sulfur cluster-binding protein [Vibrionales bacterium SWAT-3]
 gi|145964566|gb|EDK29820.1| iron-sulfur cluster-binding protein [Vibrionales bacterium SWAT-3]
          Length = 555

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C+   CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 174 DTDLCAHSSRGVKGCE--RCVDACPAGALSSEGSDKTGHKIEINPYLCQGVGTCATSCPT 231

Query: 53  DAIKPD--TEPGLELWLK 68
           +AI          + +++
Sbjct: 232 EAISYALPNPDDTQKFIE 249



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           C LC    CV VCP    +       L     +CI CG+CE  CP +
Sbjct: 422 CTLC--MSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPEN 466


>gi|150401595|ref|YP_001325361.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014298|gb|ABR56749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 151

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C++  C  +CPVD  Y  +    +  + CI CG+CE  CPV +I  D
Sbjct: 42 CMQCENAPCYNICPVDAIYLKDGIPLVKKERCIGCGMCEIVCPVGSIFID 91


>gi|146312838|ref|YP_001177912.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Enterobacter sp. 638]
 gi|145319714|gb|ABP61861.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Enterobacter sp. 638]
          Length = 202

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     E  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAGVCPVNAITRVEGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|117621436|ref|YP_857087.1| anaerobic sulfite reductase subunit C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562843|gb|ABK39791.1| anaerobic sulfite reductase subunit C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 336

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +   E CI C    CV+ C    VDC             +CI CG C   CP  A     
Sbjct: 174 HFNAERCIGC--GACVKACSHHAVDCLAIKHGKAVKEESKCIGCGECVLACPTLA--WQR 229

Query: 60  EPGLELWLKINSEYATQWP 78
           +P     +K+    + + P
Sbjct: 230 DPKQLYMVKLGGRTSKKTP 248



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C + DC +    D    G   +  + + CI CG C   C   A+  
Sbjct: 152 GCPN-DCAKANMADFGILGIAKIHFNAERCIGCGACVKACSHHAVDC 197


>gi|317485953|ref|ZP_07944809.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922803|gb|EFV44033.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 255

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    CV VCPV    + E+   +      CI C  C   CP  A   +    +  
Sbjct: 74  PCMQCGKPSCVSVCPVVATDKNEDGGIVSQIYPRCIGCRYCMASCPYHARYFNWYDPIWP 133


>gi|309792241|ref|ZP_07686713.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Oscillochloris trichoides DG6]
 gi|308225782|gb|EFO79538.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Oscillochloris trichoides DG6]
          Length = 1028

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           TY++   C+ C++  C  VCPV         L  +  + C+    C   CP  
Sbjct: 839 TYMMPMACVQCENAPCELVCPVAATVHDYEGLNNMVYNRCVGTKYCSNNCPYK 891


>gi|331670408|ref|ZP_08371247.1| putative electron transport protein YsaA [Escherichia coli TA271]
 gi|323934872|gb|EGB31254.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|331062470|gb|EGI34390.1| putative electron transport protein YsaA [Escherichia coli TA271]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|295107352|emb|CBL04895.1| Uncharacterized conserved protein [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 208

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           + V++ C  C    C   CP  C     +    I    C+ CG C   CP DAI
Sbjct: 154 FTVSDACTGC--GACFAACPQGCIAPRPDGRAFIEQQACLHCGRCREVCPSDAI 205


>gi|256840652|ref|ZP_05546160.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737924|gb|EEU51250.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 301

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIK 56
          MT  +  E+CI C    CV VCP D F +      I       CI CG C   CP  ++ 
Sbjct: 16 MTLNIDQESCIKC--GKCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVS 73

Query: 57 PDTEPGLE 64
              P  +
Sbjct: 74 HSEFPPEK 81


>gi|240146036|ref|ZP_04744637.1| putative sigma-54 dependent transcriptional regulator [Roseburia
          intestinalis L1-82]
 gi|257201852|gb|EEV00137.1| putative sigma-54 dependent transcriptional regulator [Roseburia
          intestinalis L1-82]
          Length = 642

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 6  TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +NC  C    CV  CPV           + +  ++CI CG C   C  +A +   +
Sbjct: 7  NDNCTGCNK--CVRDCPVLIANVATDAGKVIVDSEKCIACGACFDACEHNAREYQDD 61


>gi|121726918|ref|ZP_01680119.1| iron-sulfur cluster-binding protein [Vibrio cholerae V52]
 gi|147673441|ref|YP_001217069.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|262169548|ref|ZP_06037239.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC27]
 gi|121630680|gb|EAX63067.1| iron-sulfur cluster-binding protein [Vibrio cholerae V52]
 gi|146315324|gb|ABQ19863.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|227013430|gb|ACP09640.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|262021782|gb|EEY40492.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC27]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 420 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|157163051|ref|YP_001460369.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli HS]
 gi|312972149|ref|ZP_07786323.1| iron-sulfur protein [Escherichia coli 1827-70]
 gi|157068731|gb|ABV07986.1| 4Fe-4S binding domain protein [Escherichia coli HS]
 gi|310334526|gb|EFQ00731.1| iron-sulfur protein [Escherichia coli 1827-70]
 gi|332345542|gb|AEE58876.1| iron-sulfur protein [Escherichia coli UMNK88]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD     +  + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREQGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|332997622|gb|EGK17236.1| iron-sulfur protein [Shigella flexneri K-272]
 gi|333013370|gb|EGK32742.1| iron-sulfur protein [Shigella flexneri K-227]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|312137027|ref|YP_004004364.1| archaeoflavoprotein, mj0208 family [Methanothermus fervidus DSM
           2088]
 gi|311224746|gb|ADP77602.1| archaeoflavoprotein, MJ0208 family [Methanothermus fervidus DSM
           2088]
          Length = 234

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C+       CP D    G     I   +CI CG CE  CP +AI
Sbjct: 145 DLCKNCETCKAAAACPTDAIIPGRE---IELLKCIGCGSCEKACPYNAI 190


>gi|297518377|ref|ZP_06936763.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia
          coli OP50]
          Length = 173

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
          +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 41 SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 88


>gi|237748883|ref|ZP_04579363.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           OXCC13]
 gi|229380245|gb|EEO30336.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           OXCC13]
          Length = 162

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVDAI
Sbjct: 60  EEKCIGCKL--CESVCPAKAILIETEEREDGTRRTTRYDIDQSKCIFCGLCEEACPVDAI 117


>gi|255658499|ref|ZP_05403908.1| formate dehydrogenase-O, iron-sulfur subunit [Mitsuokella multacida
           DSM 20544]
 gi|260849298|gb|EEX69305.1| formate dehydrogenase-O, iron-sulfur subunit [Mitsuokella multacida
           DSM 20544]
          Length = 270

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
            V   C+ C    C + CP +   +  +  + I+ ++C+ CG C   CP D
Sbjct: 72  FVKTQCMHCGDPACAKGCPEEAIDKLASGAVVINEEKCVGCGYCVANCPFD 122


>gi|224373020|ref|YP_002607392.1| indolepyruvate oxidoreductase subunit IorA [Nautilia profundicola
           AmH]
 gi|223589889|gb|ACM93625.1| indolepyruvate oxidoreductase subunit IorA [Nautilia profundicola
           AmH]
          Length = 600

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCE 47
             V  E C+ C       VCP   + E    + I P  CI CGVC 
Sbjct: 542 ATVDEEKCVACDVCTTQYVCPPMAYNERG-KIEIDPLLCIGCGVCI 586


>gi|77918842|ref|YP_356657.1| pyruvate synthase subunit gamma [Pelobacter carbinolicus DSM 2380]
 gi|77544925|gb|ABA88487.1| pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate
           ferredoxin oxidoreductase, delta subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 310

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  E C  C    C   CP      GE+    I  + C  C VC  +CP  AIK   E
Sbjct: 238 PVIDKEKCRRCL--QCCAWCPEGGIRVGEDGFPVIDYEHCKGCLVCAAQCPFKAIKVIPE 295

Query: 61  PGLEL 65
              + 
Sbjct: 296 SQAKE 300


>gi|82778809|ref|YP_405158.1| hypothetical protein SDY_3706 [Shigella dysenteriae Sd197]
 gi|309785895|ref|ZP_07680526.1| iron-sulfur protein [Shigella dysenteriae 1617]
 gi|81242957|gb|ABB63667.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308927015|gb|EFP72491.1| iron-sulfur protein [Shigella dysenteriae 1617]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|11498555|ref|NP_069783.1| carbon monoxide dehydrogenase, iron sulfur subunit (cooF)
           [Archaeoglobus fulgidus DSM 4304]
 gi|2649645|gb|AAB90290.1| carbon monoxide dehydrogenase, iron sulfur subunit (cooF)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV  C     Y+ ++ + I    +C+ C  C   CP  AI+ + E
Sbjct: 68  CRHCEEPKCVAACIAGALYKDDDGIVIHDESKCVACYSCIMACPYGAIRINIE 120


>gi|121605275|ref|YP_982604.1| RnfABCDGE type electron transport complex subunit B [Polaromonas
           naphthalenivorans CJ2]
 gi|120594244|gb|ABM37683.1| electron transport complex, RnfABCDGE type, B subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 231

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD--- 58
           ++ E  CI C  T C++ CP D      +    +    C  C +C P CPVD I  +   
Sbjct: 91  IIDEAWCIGC--TLCIKACPTDAIIGSNKLMHTVIEPYCTGCELCIPACPVDCISLENLT 148

Query: 59  -TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            T  G   W   ++E A +       + +  ++AK     +K ++  S  P   
Sbjct: 149 GTHTGWNAWSPQDAETARKRYESHRMQHTHDNSAK----PEKLQEKVSATPAKP 198


>gi|330686365|gb|EGG97967.1| nitrate reductase, beta subunit [Staphylococcus epidermidis VCU121]
          Length = 410

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  + +     
Sbjct: 184 CEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFNWKTNKAE 242


>gi|310658701|ref|YP_003936422.1| electron transport complex, rnfABCdge type subunit B [Clostridium
           sticklandii DSM 519]
 gi|308825479|emb|CBH21517.1| Electron transport complex, RnfABCDGE type, B subunit precursor
           [Clostridium sticklandii]
          Length = 325

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V+ + CI C  T C + CP +    E +    + PD+CI C VC  +CP  AI+ 
Sbjct: 272 VIEDLCIGC--TICAKNCPTNAIEGELKAIHKVDPDKCIGCKVCYQKCPKKAIEM 324



 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI C    CV+ CP        N   I   +C  C VC  +CP  AI  D
Sbjct: 216 CIGC--QICVKSCPFQAITFENNLAKIDYSKCTQCMVCVEKCPTKAISGD 263



 Score = 40.4 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 11  LCK-HTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
            C     C  VCP D  +   +    +  ++C+ CG C   CP   I      G E+ + 
Sbjct: 140 GCLGFGTCENVCPFDAIHVYDDGIAHVDEEKCVGCGKCIEACPKAVIHWI-PYGQEVSID 198

Query: 69  INSE 72
            NS+
Sbjct: 199 CNSK 202



 Score = 38.4 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 18/81 (22%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE----------------CIDCGV 45
            +V  E C+ C    C+E CP    +       +  D                 CI C +
Sbjct: 164 AHVDEEKCVGC--GKCIEACPKAVIHWIPYGQEVSIDCNSKEKGKDVKEKCSVGCIGCQI 221

Query: 46  CEPECPVDAIKPDTEPGLELW 66
           C   CP  AI  +       +
Sbjct: 222 CVKSCPFQAITFENNLAKIDY 242



 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C    CVE CP        +      +  D CI C +C   CP +AI+ + +   +
Sbjct: 244 KCTQC--MVCVEKCPTKAISGDLSKRKTARVIEDLCIGCTICAKNCPTNAIEGELKAIHK 301


>gi|298488743|ref|ZP_07006772.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156816|gb|EFH97907.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 290

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  PG 62
           P 
Sbjct: 142 PM 143


>gi|291536105|emb|CBL09217.1| Methyl-accepting chemotaxis protein [Roseburia intestinalis
          M50/1]
          Length = 642

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 6  TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +NC  C    CV  CPV           + +  ++CI CG C   C  +A +   +
Sbjct: 7  NDNCTGCNK--CVRDCPVLIANVATDAGKVIVDSEKCIACGACFDACEHNAREYQDD 61


>gi|223007087|gb|ACM77782.1| nitrite oxidoreductase [uncultured bacterium]
          Length = 138

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I   +C     C   CP      + 
Sbjct: 86  CNHCLNPCCVASCPSGALYKRGEDGIVLIDQQKCRAWRSCVSACPYKKTYFNW 138


>gi|223007075|gb|ACM77776.1| nitrite oxidoreductase [uncultured bacterium]
          Length = 138

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I   +C     C   CP      + 
Sbjct: 86  CNHCLNPCCVASCPSGALYKRGEDGIVLIDQQKCRAWRSCVSACPYKKTYFNW 138


>gi|297583518|ref|YP_003699298.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141975|gb|ADH98732.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 276

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
            C  C+   C +VCP       +   + I  ++C+ C  C   CP D
Sbjct: 72  ACYHCEDAACEKVCPEGAISTTDMGNVVIDQEQCVGCSYCTQNCPFD 118


>gi|254286422|ref|ZP_04961380.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226]
 gi|150423589|gb|EDN15532.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCE--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 241

Query: 63  LELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 40.4 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|153004163|ref|YP_001378488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|166918784|sp|A7H9V8|NUOI_ANADF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|152027736|gb|ABS25504.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 238

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 14/77 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFY------------EGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+ C    C   CP  C Y            +      I    CI CG C   CP DAI
Sbjct: 90  RCVACYM--CATACPAQCIYIEAGEYADDPIEKYPVKFVIDELRCIVCGFCVEACPKDAI 147

Query: 56  KPDTEPGLELWLKINSE 72
           + D+        +  ++
Sbjct: 148 RMDSGEHTPPSYERGAQ 164


>gi|86158986|ref|YP_465771.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|110287754|sp|Q2IL01|NUOI1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|85775497|gb|ABC82334.1| NADH dehydrogenase subunit I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 14/77 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFY------------EGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+ C    C  +CP  C Y            +      I    CI CG C   CP DAI
Sbjct: 90  RCVACYM--CATICPAQCIYIEAAEYPDDPVEKYPAKFVIDELRCIVCGFCVEACPKDAI 147

Query: 56  KPDTEPGLELWLKINSE 72
           + D+        + +++
Sbjct: 148 RMDSGEHTPPSYERSAQ 164


>gi|303242615|ref|ZP_07329090.1| protein of unknown function DUF362 [Acetivibrio cellulolyticus CD2]
 gi|302589823|gb|EFL59596.1| protein of unknown function DUF362 [Acetivibrio cellulolyticus CD2]
          Length = 395

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
              + + CI C   DC+  CP                +CI C  C+  CP  AI
Sbjct: 316 PVFIQDKCIGC--GDCMRSCPPKVIQMKNKKPEAKLSKCIRCFCCQEMCPAKAI 367


>gi|315505198|ref|YP_004084085.1| nitrate reductase, beta subunit [Micromonospora sp. L5]
 gi|315411817|gb|ADU09934.1| nitrate reductase, beta subunit [Micromonospora sp. L5]
          Length = 565

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKRAEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 232


>gi|160938700|ref|ZP_02086052.1| hypothetical protein CLOBOL_03595 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438399|gb|EDP16158.1| hypothetical protein CLOBOL_03595 [Clostridium bolteae ATCC
           BAA-613]
          Length = 361

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T+ C+ CK   C  VC  D        + +  D+C  CG+C   CP  A+  +  P  E 
Sbjct: 288 TKKCVSCKK--CETVCCYDARKLTFPEMTVDMDKCRCCGLCLDVCPTGALTAELAPQTEK 345

Query: 66  WLKINSE 72
            L++  +
Sbjct: 346 DLELAQK 352


>gi|197118659|ref|YP_002139086.1| ferredoxin-like protein [Geobacter bemidjiensis Bem]
 gi|253700567|ref|YP_003021756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
 gi|197088019|gb|ACH39290.1| ferredoxin-related protein [Geobacter bemidjiensis Bem]
 gi|251775417|gb|ACT17998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
          Length = 55

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +++ CI C    C + CPV+   E  +   I  D CIDCG C   CPV AI
Sbjct: 1  MAHTISDECINC--GACDDSCPVNAISEAGDKRTIAADTCIDCGACVDTCPVSAI 53


>gi|30065142|ref|NP_839313.1| hypothetical protein S4152 [Shigella flexneri 2a str. 2457T]
 gi|56480380|ref|NP_709358.2| hypothetical protein SF3617 [Shigella flexneri 2a str. 301]
 gi|110807760|ref|YP_691280.1| hypothetical protein SFV_3967 [Shigella flexneri 5 str. 8401]
 gi|30043403|gb|AAP19124.1| hypothetical protein S4152 [Shigella flexneri 2a str. 2457T]
 gi|56383931|gb|AAN45065.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|110617308|gb|ABF05975.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281602938|gb|ADA75922.1| 4Fe-4S binding domain protein [Shigella flexneri 2002017]
 gi|313647555|gb|EFS12005.1| iron-sulfur protein [Shigella flexneri 2a str. 2457T]
 gi|332749976|gb|EGJ80388.1| iron-sulfur protein [Shigella flexneri K-671]
 gi|332751362|gb|EGJ81765.1| iron-sulfur protein [Shigella flexneri 2747-71]
 gi|332764223|gb|EGJ94460.1| putative electron transport protein HydN [Shigella flexneri
           2930-71]
 gi|332996354|gb|EGK15981.1| iron-sulfur protein [Shigella flexneri VA-6]
 gi|332997147|gb|EGK16763.1| iron-sulfur protein [Shigella flexneri K-218]
 gi|333012831|gb|EGK32208.1| iron-sulfur protein [Shigella flexneri K-304]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|325067722|ref|ZP_08126395.1| nitrate reductase, beta subunit [Actinomyces oris K20]
          Length = 381

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 86  CEHCLNPTCVSACPSGAMYKRTEDGIVLVDQDACRGWRMCVSSCPYKKVYF 136


>gi|310825903|ref|YP_003958260.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eubacterium
          limosum KIST612]
 gi|308737637|gb|ADO35297.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eubacterium
          limosum KIST612]
          Length = 100

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +  E C+ C    C  VCP     +  + L I  D C  CGVC   C V+AI    E
Sbjct: 41 PVIDAEKCVNCL--RCFLVCPDGTIDKSGDILEIDYDYCKGCGVCAKACKVEAITMIKE 97


>gi|302868426|ref|YP_003837063.1| nitrate reductase subunit beta [Micromonospora aurantiaca ATCC
           27029]
 gi|302571285|gb|ADL47487.1| nitrate reductase, beta subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 565

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKRAEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 232


>gi|239628144|ref|ZP_04671175.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518290|gb|EEQ58156.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 693

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  C V      +    I PD CI CG C   CP  A
Sbjct: 10 KCKHCYK--CVRYCDVKAIQVKDERAVIMPDRCILCGHCLKICPQSA 54


>gi|110801221|ref|YP_695581.1| nitroreductase family protein [Clostridium perfringens ATCC
          13124]
 gi|110675868|gb|ABG84855.1| nitroreductase family protein [Clostridium perfringens ATCC
          13124]
          Length = 272

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + C++CG C   CP +A+  D++
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMLDGKAHIKNESCMECGHCIAICPKEAV-SDSD 57

Query: 61 PGLELWLKINSEYAT 75
            +    + N +   
Sbjct: 58 YDMSKIQEYNKDSFD 72


>gi|134298337|ref|YP_001111833.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051037|gb|ABO49008.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 261

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            V + C  CK   C   C    F + +    I +P  C+ C  C   CP +  K   E
Sbjct: 67  FVKQQCFHCKEPACASACFAKAFQKTKEGPVIYYPHLCVGCRYCMVACPFNVPKYQWE 124


>gi|317123549|ref|YP_004097661.1| respiratory nitrate reductase subunit beta [Intrasporangium calvum
           DSM 43043]
 gi|315587637|gb|ADU46934.1| respiratory nitrate reductase beta subunit [Intrasporangium calvum
           DSM 43043]
          Length = 550

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+   +  + +  D+C    +C   CP   +  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKRSEDGIVLVDQDKCRGWRMCVSGCPYKKVYF 232


>gi|315180126|gb|ADT87040.1| iron-sulfur cluster-binding protein [Vibrio furnissii NCTC 11218]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C    CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCD--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATSCPT 229

Query: 53  DAIKPDTEPGLE--LWLK 68
           +AI        E   +++
Sbjct: 230 EAIHYALPNPTETQKFIE 247



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +       L     +C+ CG+C   CP +A+
Sbjct: 417 TTDCTLC--MSCVAVCPTRALHHEGELPSLKFVEQDCVQCGLCVKACPENAL 466


>gi|258405961|ref|YP_003198703.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257798188|gb|ACV69125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 139

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C  VCP       E    + I  + CI CG+C   CP+  I    E
Sbjct: 51  CNHCLNAYCQNVCPARAISRDEQTGAVVIDENRCISCGLCAQYCPLGVIIRHPE 104


>gi|213583592|ref|ZP_03365418.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 156

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 90  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 137


>gi|167772706|ref|ZP_02444759.1| hypothetical protein ANACOL_04088 [Anaerotruncus colihominis DSM
           17241]
 gi|167665184|gb|EDS09314.1| hypothetical protein ANACOL_04088 [Anaerotruncus colihominis DSM
           17241]
          Length = 172

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C  C    C+  CPV C  +             CI C  C   CP  A +     
Sbjct: 59  ACNHCADAPCIAACPVGCIKKDPKTGMTIYDNHNCIGCKSCAMACPFGAPRYRPSD 114


>gi|77919429|ref|YP_357244.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380]
 gi|77545512|gb|ABA89074.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          Y     C  C    CV  CPV      +    I P++C+ CG C   CP +A +   +  
Sbjct: 12 YTRETECQDCSK--CVRYCPVKAIKVADGQARIVPEKCVACGTCVRVCPANAKRVRDDLD 69

Query: 63 LEL 65
             
Sbjct: 70 PTK 72


>gi|219668377|ref|YP_002458812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538637|gb|ACL20376.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 191

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y  +  C  C+   CV+ CP    +  ++        +C+ C  C   CP    +   E
Sbjct: 51  YHYSGACNHCQEAKCVQGCPTGALHFADDGTVQHDRKKCVGCKYCTWNCPYSVPQFIEE 109


>gi|331665199|ref|ZP_08366100.1| putative electron transport protein YsaA [Escherichia coli TA143]
 gi|331057709|gb|EGI29695.1| putative electron transport protein YsaA [Escherichia coli TA143]
          Length = 157

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|288932139|ref|YP_003436199.1| ABC transporter [Ferroglobus placidus DSM 10642]
 gi|288894387|gb|ADC65924.1| ABC transporter related protein [Ferroglobus placidus DSM 10642]
          Length = 587

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 1  MTY----VVTENC--ILCKHTDCVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPEC 50
          M+Y    V  + C    C H +C++ CP     D   + E    I  + C+ CG+C  +C
Sbjct: 1  MSYRIAVVDKDRCQPKKCSH-ECLKYCPKVRTGDETIKIEEKAVISEELCVGCGICVKKC 59

Query: 51 PVDAI 55
          P  AI
Sbjct: 60 PFKAI 64


>gi|218780883|ref|YP_002432201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762267|gb|ACL04733.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 354

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  E+C  C+   C+E C +      ++   I+ D CI CG+C   CP +AI
Sbjct: 272 AVVSDEDCTGCE--TCLERCQMGAIDMKDDVAQINLDRCIGCGLCVTTCPTEAI 323


>gi|33151579|ref|NP_872932.1| nitrate reductase, Fe-S protein [Haemophilus ducreyi 35000HP]
 gi|33147799|gb|AAP95321.1| nitrate reductase, Fe-S protein [Haemophilus ducreyi 35000HP]
          Length = 225

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +   N   + +  D C+ C  C   CP        E
Sbjct: 93  QSCQHCTNAPCVAVCPTGASFVDPNTGIVDVDSDLCVGCQYCIAVCPYRVRFIHPE 148


>gi|330506903|ref|YP_004383331.1| iron sulfur cluster/nucleotide binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927711|gb|AEB67513.1| iron sulfur cluster/nucleotide binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 287

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  E C  C    C EVC           + I P+ C  CG C   CP  AI   +  
Sbjct: 65  PVIDEELCTHC--GKCSEVCAYHALAVLPGTVLIFPELCHGCGACSIICPEKAISEGSRS 122

Query: 62  GLELW 66
             E++
Sbjct: 123 IGEIF 127


>gi|329898086|ref|ZP_08272295.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC3088]
 gi|328920958|gb|EGG28383.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC3088]
          Length = 198

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I   + 
Sbjct: 113 AYIHEDECIGC--TKCIQACPVDAILGAAKLMHTVIASECTGCDLCVEPCPVDCIDMIEL 170

Query: 60  EPGLELW 66
              L+ W
Sbjct: 171 PTTLQNW 177


>gi|328954778|ref|YP_004372111.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coriobacterium glomerans PW2]
 gi|328455102|gb|AEB06296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coriobacterium glomerans PW2]
          Length = 412

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 19/88 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--------------LAIHPDECIDCGVCEPECPVDA 54
           CI C+   C  VC  D     E                  I    C+ CG C   C  DA
Sbjct: 214 CIGCR--ACARVCAFDAISFTETRERALAGGATRQIQVAGIDQTRCVGCGRCIGACNQDA 271

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITT 82
           I        +    +N + A     +  
Sbjct: 272 I---VPDYDQAAAVLNCKIAEYTKAVVQ 296


>gi|313157389|gb|EFR56812.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 290

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 5  VTEN-CILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTE 60
          V +  CI C    CV+VCP   F + +   A+    P+ CI CG C   CP  A++    
Sbjct: 8  VNDAICIRC--GRCVKVCPSQIFVQEKAGAAVTLHKPENCIVCGHCAAACPTGAVEHADF 65

Query: 61 PGLE 64
          P  +
Sbjct: 66 PAEK 69


>gi|312792686|ref|YP_004025609.1| hypothetical protein Calkr_0447 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179826|gb|ADQ39996.1| protein of unknown function DUF362 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C   +C   CP            +   +CI C  C   CP  AIK       E 
Sbjct: 318 CIGC--AECFNACPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAIKIKRSILFEK 372


>gi|302335790|ref|YP_003800997.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Olsenella uli DSM 7084]
 gi|301319630|gb|ADK68117.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Olsenella uli DSM 7084]
          Length = 355

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           MTY +    C  C   DC+  C  D    + +    I    CI CG C   C   A+  
Sbjct: 281 MTYHILVSRCTGC--GDCLAACEEDAITGKDKFVHVIDQKACIQCGRCLEACGEGAVVM 337


>gi|228472641|ref|ZP_04057401.1| iron-sulfur binding oxidoreductase [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276054|gb|EEK14810.1| iron-sulfur binding oxidoreductase [Capnocytophaga gingivalis ATCC
           33624]
          Length = 1032

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT---EPGLE 64
           C  C +  C  VCPV     G      +  + C+    C   CP    + +        E
Sbjct: 859 CQQCNNAPCETVCPVGATSHGLQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYSNNNE 918

Query: 65  LWLKINSEYATQWPN 79
               +N +Y     N
Sbjct: 919 FDYHMNDDYGKMVLN 933


>gi|225018512|ref|ZP_03707704.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum
           DSM 5476]
 gi|224948713|gb|EEG29922.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum
           DSM 5476]
          Length = 203

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + +T++CI C    C  +CP  C   G     I    C+ CG+C+ +CPV AI+   E
Sbjct: 149 FQITDSCIEC--GRCRRICPQQCIEPGSP-YVIRQQNCLHCGLCQEQCPVQAIERKGE 203


>gi|88607532|ref|YP_505378.1| NADH dehydrogenase subunit I [Anaplasma phagocytophilum HZ]
 gi|115502516|sp|Q2GJS3|NUOI_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88598595|gb|ABD44065.1| NADH dehydrogenase I, I subunit [Anaplasma phagocytophilum HZ]
          Length = 164

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 20/100 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIEAEERSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                P  E   +   E       +  K++ L +    + 
Sbjct: 120 V--EGPNFEYSTETREEL------MYNKEKLLANGDIWEE 151


>gi|20094236|ref|NP_614083.1| bifunctional coenzyme F420-reducing hydrogenase subunit
           beta/oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887267|gb|AAM02013.1| Coenzyme F420-reducing hydrogenase, beta subunit fused to
           oxidoreductase related to nitrite reductase
           [Methanopyrus kandleri AV19]
          Length = 668

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 7/62 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E C  C    CV+ C VD                    C+ CG C   CP +A   +
Sbjct: 535 VDPEKCTGC--GQCVDACKVDAIRIITVGGQAAVADTDYKRCVYCGKCINVCPEEARYAE 592

Query: 59  TE 60
            E
Sbjct: 593 KE 594


>gi|11498801|ref|NP_070030.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2649382|gb|AAB90042.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 165

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    CV+ CP     +  +    +  D CI C +C   CP  A +   +  + ++
Sbjct: 64  CRHCLSAPCVDECPTGALRKSEDGMTVLDLDLCIGCKICMEVCPFGAPQLGDDGKVRIY 122



 Score = 35.3 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI 41
           MT +  + CI CK   C+EVCP      G++      D C+
Sbjct: 88  MTVLDLDLCIGCK--ICMEVCPFGAPQLGDDGKVRIYDLCM 126


>gi|188492317|ref|ZP_02999587.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
 gi|188487516|gb|EDU62619.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
          Length = 157

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|116748293|ref|YP_844980.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
 gi|116697357|gb|ABK16545.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
          Length = 417

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIK 56
          V  E C  C   +C   CP       +       + P  CI+CG C   CP  A+ 
Sbjct: 27 VDPEKCQGC--GECDNHCPTGAVQARDPAGVRHVVSPAACINCGQCLVNCPHGAVY 80


>gi|323699739|ref|ZP_08111651.1| cobyrinic acid ac-diamide synthase [Desulfovibrio sp. ND132]
 gi|323459671|gb|EGB15536.1| cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans
           ND132]
          Length = 292

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E CI C    C E+C  D   E  +   ++   C  C VC   CP  AI  
Sbjct: 61  AVIDPERCIGC--GQCAELCRFDAVREDGDVYRVNSLACEGCKVCVALCPEKAIDF 114


>gi|268610343|ref|ZP_06144070.1| hypothetical protein RflaF_12691 [Ruminococcus flavefaciens FD-1]
          Length = 205

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++CI C    C+  CP     E +    I  + C+ CG C   CPV A+
Sbjct: 153 YFVTDDCIRC--GSCLSDCP-QSCIELKEKAVIRQENCLHCGNCAAVCPVGAV 202


>gi|260768415|ref|ZP_05877349.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972]
 gi|260616445|gb|EEX41630.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 16/78 (20%)

Query: 5   VTENC-------ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
            T+ C         C    CV+ CP          +  + + I+P  C   G C   CP 
Sbjct: 172 DTDLCAHSSRGVKGCD--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATSCPT 229

Query: 53  DAIKPDTEPGLE--LWLK 68
           +AI        E   +++
Sbjct: 230 EAIHYALPNPTETQKFIE 247



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP +A+
Sbjct: 417 TTDCTLC--MSCVAVCPTRALHHEGDLPSLKFVEQDCVQCGLCVKACPENAL 466


>gi|254881564|ref|ZP_05254274.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294778845|ref|ZP_06744262.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|254834357|gb|EET14666.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294447298|gb|EFG15881.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
          Length = 301

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  TE CI CK   C +VCPV      +    +    C  C  C   CPV A++ 
Sbjct: 232 PFHATEACIGCKK--CEKVCPVGNITVTDRP--VWGGNCTQCLACYHVCPVHAVEY 283


>gi|261856462|ref|YP_003263745.1| cytochrome C oxidase accessory protein CcoG [Halothiobacillus
           neapolitanus c2]
 gi|261836931|gb|ACX96698.1| cytochrome c oxidase accessory protein CcoG [Halothiobacillus
           neapolitanus c2]
          Length = 473

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI CK   CV+VCP          L      CI CG+C   C     K     GL  
Sbjct: 268 TGDCIDCKL--CVQVCPTGIDIRDGLQL-----ACISCGLCIDACNEIMHKRGWPEGLIR 320

Query: 66  W 66
           +
Sbjct: 321 Y 321


>gi|197116471|ref|YP_002136898.1| carbon monoxide dehydrogenase-associated iron-sulfur
           cluster-binding oxidoreductase CooF [Geobacter
           bemidjiensis Bem]
 gi|197085831|gb|ACH37102.1| carbon monoxide dehydrogenase-associated iron-sulfur
           cluster-binding oxidoreductase CooF [Geobacter
           bemidjiensis Bem]
          Length = 189

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C   CP     + +  + +    C+ C VC   CP  AI    E   E 
Sbjct: 65  CRQCEDAPCACACPTGAMLQEKGAVGVREKNCVGCKVCVMVCPFGAISVKHEGSEEA 121


>gi|158319108|ref|YP_001511615.1| thiamine pyrophosphate binding domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158139307|gb|ABW17619.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Alkaliphilus oremlandii OhILAs]
          Length = 593

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V  E CI CK   CV   CP   F       +I+ ++C+ C VC   CPV AI
Sbjct: 536 YSVNHEVCIGCK--ACVRTGCPAISFDTEHKKSSINIEQCVGCSVCYQVCPVKAI 588


>gi|78357324|ref|YP_388773.1| ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219729|gb|ABB39078.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 439

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C+ C   +C   CP        E      + P  C++CG C   CP  AI  +  
Sbjct: 51  VDHDKCMAC--GECEYHCPTGVMQEVTEDGYRGVVDPVACVNCGQCLANCPFGAIHEEVS 108

Query: 61  PGLELWLKI 69
              EL+ K+
Sbjct: 109 FVGELYEKL 117


>gi|20093689|ref|NP_613536.1| heterodisulfide reductase, subunit A [Methanopyrus kandleri AV19]
 gi|190358780|sp|Q8TYP4|HDRA1_METKA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A 1
 gi|19886574|gb|AAM01466.1| Heterodisulfide reductase, subunit A [Methanopyrus kandleri AV19]
          Length = 669

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 22/81 (27%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           YV  + C  C    C EVCP++   E +  +                   I  + CI CG
Sbjct: 243 YVDEDACTGC--GVCAEVCPIEVPNEFDLGIGTRKAIYVPFPQAMPLVYTIDMEHCIQCG 300

Query: 45  VCEPECPVD--AIKPDTEPGL 63
           +CE  CP D  AI  D EP  
Sbjct: 301 LCEEACPQDPPAIDFDQEPEE 321



 Score = 38.4 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + C  C    C +VCP D        G+    +    C  CG C   CP  A++
Sbjct: 586 ATVDEDVCGGC--GACAQVCPFDAIEMVEKDGKRVAEVQDVACQGCGQCAAACPSGAMQ 642


>gi|51244331|ref|YP_064215.1| Fe-center hydrogenase, large subunit [Desulfotalea psychrophila
          LSv54]
 gi|50875368|emb|CAG35208.1| probable Fe-center hydrogenase, large subunit [Desulfotalea
          psychrophila LSv54]
          Length = 471

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          +  E C  C    C EVCPV       N    I  D CI CG C   C   
Sbjct: 20 IDQELCTGC--GRCKEVCPVGAISGRLNRAHQIDTDACIFCGQCVQICSGY 68


>gi|330829269|ref|YP_004392221.1| anaerobic sulfite reductase subunit C [Aeromonas veronii B565]
 gi|328804405|gb|AEB49604.1| Anaerobic sulfite reductase subunit C [Aeromonas veronii B565]
          Length = 336

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +   E CI C    CV+ C    VDC             +CI CG C   CP  A     
Sbjct: 174 HFNAERCIGC--GACVKACNHHAVDCLAIKHGKAVKEESKCIGCGECVLACPTLA--WQR 229

Query: 60  EPGLELWLKINSEYATQWP 78
           +P     +K+    + + P
Sbjct: 230 DPKQLYMVKLGGRTSKKTP 248



 Score = 34.6 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C + DC +    D    G   +  + + CI CG C   C   A+  
Sbjct: 152 GCPN-DCAKANMADFGILGIAKIHFNAERCIGCGACVKACNHHAVDC 197


>gi|315638045|ref|ZP_07893230.1| iron-sulfur cluster-binding protein [Campylobacter upsaliensis
           JV21]
 gi|315481893|gb|EFU72512.1| iron-sulfur cluster-binding protein [Campylobacter upsaliensis
           JV21]
          Length = 309

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            +   C+ C    C ++CP     + +N    I    C     C   CP 
Sbjct: 110 FIPRRCMHCDDPTCQKICPFGVISKDKNNAVNIDEHFCFGGAKCRDVCPW 159


>gi|311278308|ref|YP_003940539.1| formate hydrogenlyase subunit 2 [Enterobacter cloacae SCF1]
 gi|308747503|gb|ADO47255.1| formate hydrogenlyase subunit 2 [Enterobacter cloacae SCF1]
          Length = 202

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAGVCPVNAITRIDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|302337816|ref|YP_003803022.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
          DSM 11293]
 gi|301635001|gb|ADK80428.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
          DSM 11293]
          Length = 575

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          Y     C  C    CV  CPV      +    +  D C+ CG C   CPV A +   +  
Sbjct: 6  YTEQAACQDCYK--CVRECPVKAIEVKDGHAVVVQDLCLYCGHCVTVCPVGAKRMREDLP 63

Query: 63 LELWLKINSE 72
              L    E
Sbjct: 64 RAKLLLARRE 73


>gi|258591540|emb|CBE67841.1| Nitrate reductase, beta subunit; may be more similar to nitrite
           oxidoreductase [NC10 bacterium 'Dutch sediment']
          Length = 509

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV  CP    Y+   +  + I  D+C    +C   CP      + +
Sbjct: 184 CNHCANPGCVAACPAGAIYKRGEDGIVLIGQDKCRAWRMCISGCPYKKPYFNWK 237


>gi|257064045|ref|YP_003143717.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256791698|gb|ACV22368.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 578

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y +  NC  C    C  + CP           +I P  C  C  C   CP DAI  +
Sbjct: 522 YWINANCRGC--GICTTLGCPAISRDSESRLASIDPSLCCGCSQCSQLCPFDAIVHE 576


>gi|196248064|ref|ZP_03146766.1| nitrate reductase, beta subunit [Geobacillus sp. G11MC16]
 gi|196212848|gb|EDY07605.1| nitrate reductase, beta subunit [Geobacillus sp. G11MC16]
          Length = 472

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  + +     
Sbjct: 143 CEHCLNPPCVSSCPSGAIYKRDEDGIVLVDHDACRSWRFCVTGCPYKKVYFNWKTHKAE 201


>gi|167770282|ref|ZP_02442335.1| hypothetical protein ANACOL_01625 [Anaerotruncus colihominis DSM
          17241]
 gi|167667604|gb|EDS11734.1| hypothetical protein ANACOL_01625 [Anaerotruncus colihominis DSM
          17241]
          Length = 149

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  CPV C  +  +          CI C  C   CP  A
Sbjct: 36 ACAHCDDAPCVMACPVGCLQKDYDTGMTVYDNTRCIGCRSCGMACPFGA 84


>gi|78355312|ref|YP_386761.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217717|gb|ABB37066.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 427

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 13/69 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPE 49
           M  +  E C  C    C   CP+D                   + +    C+ CG C  +
Sbjct: 284 MAQIQEERCTGC--GKCAAACPIDAITMVPAAQTTPDTRRRRSVQVDTSLCLGCGACALK 341

Query: 50  CPVDAIKPD 58
           CP  A+  +
Sbjct: 342 CPTGAMVLE 350


>gi|302876987|ref|YP_003845620.1| nitroreductase [Clostridium cellulovorans 743B]
 gi|307687678|ref|ZP_07630124.1| nitroreductase [Clostridium cellulovorans 743B]
 gi|302579844|gb|ADL53856.1| nitroreductase [Clostridium cellulovorans 743B]
          Length = 273

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V  E CI C    C++ C        +    I  + C  CG C   CP +A+  D  
Sbjct: 1  MMKVNAEKCIGC--GQCIKDCFPRDIEMVDGKAIIKNEACFKCGHCIAVCPKEAVSTDEY 58

Query: 61 PGLE 64
             E
Sbjct: 59 NMEE 62


>gi|167747453|ref|ZP_02419580.1| hypothetical protein ANACAC_02174 [Anaerostipes caccae DSM 14662]
 gi|167652815|gb|EDR96944.1| hypothetical protein ANACAC_02174 [Anaerostipes caccae DSM 14662]
          Length = 276

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C EVCP+      +         CI CG C  +CP  A   + E  L    +
Sbjct: 206 CDGC--GICAEVCPMGSIRREDIRTV--DGICIKCGACIKKCPKHAKYYEDEGYLYHKTE 261

Query: 69  INSEY 73
           +  +Y
Sbjct: 262 LEEQY 266


>gi|312876536|ref|ZP_07736519.1| protein of unknown function DUF362 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796747|gb|EFR13093.1| protein of unknown function DUF362 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C   +C   CP            +   +CI C  C   CP  AIK       E 
Sbjct: 318 CIGC--AECFNACPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAIKIKRSVLFEK 372


>gi|315499798|ref|YP_004088601.1| NADH-quinone oxidoreductase, chain i [Asticcacaulis excentricus CB
           48]
 gi|315417810|gb|ADU14450.1| NADH-quinone oxidoreductase, chain I [Asticcacaulis excentricus CB
           48]
          Length = 163

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 61  EERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N E+AT         K + L +  + +  
Sbjct: 119 VEGP----------NFEFATDTREELYYDKSKLLANGDRWERE 151


>gi|237714546|ref|ZP_04545027.1| ferredoxin [Bacteroides sp. D1]
 gi|229445315|gb|EEO51106.1| ferredoxin [Bacteroides sp. D1]
          Length = 300

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P +C  C  C   CP ++I
Sbjct: 201 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNSI 248



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 125 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 171


>gi|123442265|ref|YP_001006246.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122089226|emb|CAL12072.1| putative iron-sulfur protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 207

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIEM 164


>gi|89053678|ref|YP_509129.1| NADH dehydrogenase subunit I [Jannaschia sp. CCS1]
 gi|115502532|sp|Q28T58|NUOI_JANSC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88863227|gb|ABD54104.1| NADH dehydrogenase subunit I [Jannaschia sp. CCS1]
          Length = 164

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E          K++ L +  + +
Sbjct: 120 V--EGPNFEFATETREEL------YYDKEKLLANGERWE 150


>gi|88811011|ref|ZP_01126267.1| electron transport complex protein RnfB [Nitrococcus mobilis
           Nb-231]
 gi|88791550|gb|EAR22661.1| electron transport complex protein RnfB [Nitrococcus mobilis
           Nb-231]
          Length = 277

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +   EC  C +C   CPVD I     
Sbjct: 111 AWIDETACIGC--TRCIQACPVDAILGTAKQMHTVIRTECTGCALCIAPCPVDCIHLRAV 168

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                  +   +      NI+  K  L S  ++     
Sbjct: 169 TQDIDAAQTRPDQNPAAANISCSKPQLQSWEQLRDKAD 206


>gi|117923999|ref|YP_864616.1| electron transport complex, RnfABCDGE type subunit beta
           [Magnetococcus sp. MC-1]
 gi|226735422|sp|A0L5G7|RNFB_MAGSM RecName: Full=Electron transport complex protein rnfB
 gi|117607755|gb|ABK43210.1| electron transport complex, RnfABCDGE type, B subunit
           [Magnetococcus sp. MC-1]
          Length = 181

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+  E CI C  T C++VCPVD           +   EC  C +C   CP D I     
Sbjct: 103 AYIDEEACIGC--TACIKVCPVDAIVGANKQSHTVIVAECTSCQLCLEPCPTDCITMQPV 160

Query: 61  PG 62
           P 
Sbjct: 161 PE 162


>gi|268607960|ref|ZP_06141691.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
          pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor
          protein [Ruminococcus flavefaciens FD-1]
          Length = 97

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V  E C+ C+   C   CP            I  D C  CG+C   C + AI  + E
Sbjct: 39 PVVANEKCVGCE--QCYLYCPDGVISINNGKAEIDYDFCKGCGICAKICKLGAIGMEAE 95


>gi|262203451|ref|YP_003274659.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262086798|gb|ACY22766.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 333

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           ++ C  C H  C++VCP    +  E   + I  D C  CG C   CP 
Sbjct: 132 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVIQDDVCNGCGTCVAGCPF 179


>gi|170760254|ref|YP_001787599.1| iron-sulfur binding protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407243|gb|ACA55654.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 281

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + CI C    C  +C  D     +    I P  C  CG C   CP +AIK + E   
Sbjct: 62  IDEDVCIKC--GKCKSICKFDAIENFK----IDPFLCEGCGACTLTCPPNAIKLEDEKNA 115

Query: 64  ELWL 67
           E ++
Sbjct: 116 ETFI 119


>gi|170754223|ref|YP_001781834.1| iron-sulfur binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119435|gb|ACA43271.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum B1 str.
           Okra]
          Length = 281

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + CI C  T+C  VC  D        L I P  C  CG C   CP +AIK + E   
Sbjct: 62  IDEDICIKC--TECELVCKFDAIKN----LKIDPFLCEGCGACTLICPQNAIKLEDEKTA 115

Query: 64  ELWL 67
           + ++
Sbjct: 116 KTFI 119


>gi|83591098|ref|YP_431107.1| thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073]
 gi|83574012|gb|ABC20564.1| Thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073]
          Length = 631

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  +NC+ C++  C+++ CP   F +G     I P  C  CG+C   CP +AI+   E  
Sbjct: 575 VSPDNCLSCRY--CLDLGCPAISFSDGHG--VIDPVLCNGCGLCTQVCPGEAIRKAGEED 630

Query: 63  L 63
            
Sbjct: 631 E 631


>gi|51245051|ref|YP_064935.1| pyruvate synthase, gamma subunit [Desulfotalea psychrophila LSv54]
 gi|50876088|emb|CAG35928.1| probable pyruvate synthase, gamma subunit [Desulfotalea
           psychrophila LSv54]
          Length = 309

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C  C    C   CP            I  D C  C +C  +CP  AI+  +E   + 
Sbjct: 247 QRCKGCWW-ICSTFCPDGAIPVRGKIPEIDYDHCKGCMICVAQCPTHAIEAVSERLAQE 304


>gi|95928896|ref|ZP_01311642.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135241|gb|EAT16894.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 180

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C ++ CV+ CP     + EN +  +   +C+ C  C   CP  A   + E
Sbjct: 59  CMHCDNSPCVDACPTGASIQAENGIVHVEDKKCVGCLSCIMACPYGARYHNHE 111


>gi|333031169|ref|ZP_08459230.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741766|gb|EGJ72248.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 321

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP-DTEPGLELW 66
           +CI C    C + CP +     +    I P +C  C  C   CP  +I   +  P     
Sbjct: 221 SCIGC--GICAKTCPFEAITVKDRLAYIDPHKCKSCRKCVEVCPQGSIIEVNFPPRKPKV 278

Query: 67  LKINSEYATQWPNITTK 83
            +  +E A +  + T+K
Sbjct: 279 KEGEAETAKKVVDKTSK 295



 Score = 34.2 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV VC  D  +         +   +C  C  C   CP + I
Sbjct: 143 CLGC--GDCVTVCQFDAIHINPETGIPEVDEAKCTACNSCVEACPKNII 189


>gi|289626586|ref|ZP_06459540.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647568|ref|ZP_06478911.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867251|gb|EGH01960.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 290

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|225572306|ref|ZP_03781170.1| hypothetical protein RUMHYD_00600 [Blautia hydrogenotrophica DSM
          10507]
 gi|225040188|gb|EEG50434.1| hypothetical protein RUMHYD_00600 [Blautia hydrogenotrophica DSM
          10507]
          Length = 56

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+T+ C+ C    C   CP     E E    I+  +C+ CG C   CP  AI
Sbjct: 1  MAFVITDRCVKC--GACESECPNKAIVEEEKKFCINYRKCLQCGNCIDVCPNKAI 53


>gi|239617509|ref|YP_002940831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
          olearia TBF 19.5.1]
 gi|239506340|gb|ACR79827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
          olearia TBF 19.5.1]
          Length = 95

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M +V   +CI C    CV+ CPV +     +    I    C  CG C   CP +AI P++
Sbjct: 1  MPWVKENDCIGC--GLCVQACPVENAIKMKDRKAVIDNSVCTRCGKCFDVCPKNAIHPNS 58

Query: 60 E 60
          E
Sbjct: 59 E 59


>gi|168260584|ref|ZP_02682557.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205350180|gb|EDZ36811.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 157

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCPV         + +    CI C  C   CP  A+
Sbjct: 58  CHQCEDASCANVCPVQAIRRDRGHIFVTSSRCIGCKSCMLACPFGAM 104


>gi|116619541|ref|YP_821697.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116222703|gb|ABJ81412.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 251

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +   C  C    CV VCP            +   P+ C+ C  C   CP  A   +   
Sbjct: 72  FIPMLCQHCGDAPCVSVCPQQAIDVNPVTGIVEQMPERCLGCRYCMVACPYHARYFNW-- 129

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                      +   WP    K  +   A +M GV +K
Sbjct: 130 -----------WDPAWPPGMEKTLNPDVAPRMRGVVEK 156


>gi|158321482|ref|YP_001513989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158141681|gb|ABW19993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 56

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++E+CI C    C   CPV     G+    I  D CI+CG C   CPVDA KP+
Sbjct: 1  MAYKISEDCISC--GACEPECPVSVISAGDTQYVIDADGCIECGACANVCPVDAPKPE 56


>gi|332161836|ref|YP_004298413.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605661|emb|CBY27159.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666066|gb|ADZ42710.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 207

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIEM 164


>gi|315225679|ref|ZP_07867486.1| iron-sulfur binding oxidoreductase [Capnocytophaga ochracea F0287]
 gi|314944342|gb|EFS96384.1| iron-sulfur binding oxidoreductase [Capnocytophaga ochracea F0287]
          Length = 954

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 781 CQHCNNAPCETVCPVIATAHGQQGQNQMSYNRCVGTRYCANNCPYKVRRFNW 832


>gi|306816073|ref|ZP_07450211.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli NC101]
 gi|305850469|gb|EFM50926.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli NC101]
          Length = 155

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|302548141|ref|ZP_07300483.1| LOW QUALITY PROTEIN: formate dehydrogenase, iron-sulfur subunit
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302465759|gb|EFL28852.1| LOW QUALITY PROTEIN: formate dehydrogenase, iron-sulfur subunit
           [Streptomyces himastatinicus ATCC 53653]
          Length = 260

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP 
Sbjct: 102 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPY 149


>gi|283853304|ref|ZP_06370553.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
 gi|283571285|gb|EFC19296.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
          Length = 421

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V    CI C    C+  CP        GE    + P+ CI CG C   CP  AI  +
Sbjct: 30 VDESKCIGCD--ACLSYCPTGAIVGEMGEPHKIVAPEACIHCGQCLTHCPQGAIYEE 84


>gi|257459873|ref|ZP_05624979.1| 4Fe-4S binding domain protein [Campylobacter gracilis RM3268]
 gi|257442725|gb|EEV17862.1| 4Fe-4S binding domain protein [Campylobacter gracilis RM3268]
          Length = 235

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   CV+VCP    ++ E      ++ D+CI C  C   CP D    + E     
Sbjct: 105 SCQQCEDAPCVKVCPTKACHKDEKTGITTMNTDDCIACKYCIVACPYDVRFINHETKAAE 164


>gi|239906439|ref|YP_002953180.1| molybdopterin oxidoreductase iron-sulfur cluster-binding subunit
           [Desulfovibrio magneticus RS-1]
 gi|239796305|dbj|BAH75294.1| molybdopterin oxidoreductase iron-sulfur cluster-binding subunit
           [Desulfovibrio magneticus RS-1]
          Length = 252

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C +  CV VCPV    + E+   +      CI C  C   CP           +  
Sbjct: 75  PCQQCGNPPCVSVCPVIATDKNEDGGIVSQVYPRCIGCRYCVAACPYHVRYFGWYDPIWP 134


>gi|223007073|gb|ACM77775.1| nitrite oxidoreductase [uncultured bacterium]
          Length = 138

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I   +C     C   CP      + 
Sbjct: 86  CNHCLNPCCVASCPSGALYKRGEDGIVLIDQQKCRAWRSCVSACPYKKTYFNW 138


>gi|223007067|gb|ACM77772.1| nitrite oxidoreductase [uncultured bacterium]
 gi|223007069|gb|ACM77773.1| nitrite oxidoreductase [uncultured bacterium]
 gi|223007071|gb|ACM77774.1| nitrite oxidoreductase [uncultured bacterium]
 gi|223007079|gb|ACM77778.1| nitrite oxidoreductase [uncultured bacterium]
 gi|223007083|gb|ACM77780.1| nitrite oxidoreductase [uncultured bacterium]
 gi|223007085|gb|ACM77781.1| nitrite oxidoreductase [uncultured bacterium]
          Length = 138

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I   +C     C   CP      + 
Sbjct: 86  CNHCLNPCCVASCPSGALYKRGEDGIVLIDQQKCRAWRSCVSACPYKKTYFNW 138


>gi|254247589|ref|ZP_04940910.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia PC184]
 gi|124872365|gb|EAY64081.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia PC184]
          Length = 342

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +    I    C  C +C P CPVD I  
Sbjct: 117 AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAM 171


>gi|301629607|ref|XP_002943929.1| PREDICTED: protein rdxA-like [Xenopus (Silurana) tropicalis]
          Length = 470

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI CG+C   C     K     GL  +  
Sbjct: 265 CIDCSL--CVQVCPTGIDIRNGLQY-----ECIGCGLCVDACNSVMDKVHYPRGLIRYAT 317

Query: 69  INSEYATQW 77
            N   A +W
Sbjct: 318 QNG-MAQRW 325


>gi|296444802|ref|ZP_06886765.1| NADH-quinone oxidoreductase, chain I [Methylosinus trichosporium
           OB3b]
 gi|296257750|gb|EFH04814.1| NADH-quinone oxidoreductase, chain I [Methylosinus trichosporium
           OB3b]
          Length = 162

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E  ++   E          K   L + A+ +  
Sbjct: 117 IV--EGPNQEFAVETREEL------YYNKDRLLENGARWERE 150


>gi|294635463|ref|ZP_06713950.1| putative oxidoreductase, Fe-S subunit [Edwardsiella tarda ATCC
           23685]
 gi|291091159|gb|EFE23720.1| putative oxidoreductase, Fe-S subunit [Edwardsiella tarda ATCC
           23685]
          Length = 208

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C  C+   C++ CP+    +      +A+    CI C  C   CP   
Sbjct: 121 DTCRQCRDPACLDACPIGAIRWRADLGCIAVDQKRCIGCSACTTACPWMM 170


>gi|257453944|ref|ZP_05619220.1| ferredoxin [Enhydrobacter aerosaccus SK60]
 gi|257448609|gb|EEV23576.1| ferredoxin [Enhydrobacter aerosaccus SK60]
          Length = 87

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC--GVCEPECPVDAIKPD 58
          M  ++T+ CI C    C  +CP D  Y GE    I P  C +C     EP+C +    PD
Sbjct: 1  MALIITDECINCD--VCEPLCPNDAIYVGELIYEIDPALCTECVGHFDEPQCSLFCPVPD 58

Query: 59 TEPGLELWLKINSEYATQWPNITTKK 84
            P    +L+  ++   ++  IT  K
Sbjct: 59 CIPKDPNYLETPAQLLLKFERITQTK 84


>gi|169831205|ref|YP_001717187.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638049|gb|ACA59555.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 280

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           + V   C+ C++  C EVC V  + +      +  HP+ C+ C  C+  CP   +  + +
Sbjct: 89  HHVRRACLHCQNPLCFEVCFVHSYRKTPEGPVVYAHPEICVGCRYCQLACPFLTVTLEWD 148

Query: 61  P 61
            
Sbjct: 149 D 149


>gi|168216021|ref|ZP_02641646.1| nitroreductase family protein [Clostridium perfringens NCTC 8239]
 gi|182381714|gb|EDT79193.1| nitroreductase family protein [Clostridium perfringens NCTC 8239]
          Length = 272

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + C++CG C   CP +A+  D++
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMLDGKAHIKNESCMECGHCIAICPKEAV-SDSD 57

Query: 61 PGLELWLKINSEYAT 75
            +    + N +   
Sbjct: 58 YDMSKIQEYNKDSFD 72


>gi|218961804|ref|YP_001741579.1| electron transport complex protein rnfB, polyferredoxin subunit
           (rnfB module) [Candidatus Cloacamonas acidaminovorans]
 gi|167730461|emb|CAO81373.1| electron transport complex protein rnfB, polyferredoxin subunit
           (rnfB module) [Candidatus Cloacamonas acidaminovorans]
          Length = 287

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C + CP +      N   I   +C DCG C   CP  AI
Sbjct: 231 PCIGCSL--CAKKCPAEAITVENNIARIDYGKCTDCGTCATVCPTKAI 276



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+     DC+  C  D        +  I  ++C  CG C   CP   I    E
Sbjct: 155 CVG--FNDCIAACKFDAISIDNEGMRVIDREKCTGCGACVTACPRKLIMLVPE 205


>gi|158520200|ref|YP_001528070.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509026|gb|ABW65993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 386

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVD 53
             + TE C LC    CV+ CPV+  Y          +NF+A++  EC+ CGVC   C  +
Sbjct: 300 PVIKTEECNLC--MACVDKCPVNALYHHKPHKDDGSDNFIALNESECLGCGVCVMACDNE 357

Query: 54  AIK 56
           AI+
Sbjct: 358 AIQ 360


>gi|148380175|ref|YP_001254716.1| 4Fe-4S cluster containing ParA family ATPase protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934264|ref|YP_001384474.1| iron-sulfur binding protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153936550|ref|YP_001387990.1| iron-sulfur binding protein [Clostridium botulinum A str. Hall]
 gi|148289659|emb|CAL83763.1| 4Fe-4S cluster containing ParA family ATPase protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|152930308|gb|ABS35808.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932464|gb|ABS37963.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A str.
           Hall]
          Length = 281

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + CI C  T+C  VC  D        L I P  C  CG C   CP +AIK + E   
Sbjct: 62  IDEDICIKC--TECELVCKFDAIKN----LKIDPFLCEGCGACTLICPQNAIKLEDEKTA 115

Query: 64  ELWL 67
           + ++
Sbjct: 116 KTFI 119


>gi|159899734|ref|YP_001545981.1| NADH-quinone oxidoreductase subunit I [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892773|gb|ABX05853.1| NADH-quinone oxidoreductase, chain I [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 168

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------------LAIHPDECIDCGVCEPEC 50
           E CI C    C   CP D  Y                       I+   CI CG CE  C
Sbjct: 53  ERCIGCSL--CAAACPADAIYVVPGQNDPANPRSAGERHAAVYEINMLRCIFCGYCEDAC 110

Query: 51  PVDAIKPDTEPGLELW 66
           P +AI  + +  L  +
Sbjct: 111 PTNAIVLEHQYELAFY 126


>gi|121607727|ref|YP_995534.1| FAD/NAD(P)-binding oxidoreductase subunit [Verminephrobacter
          eiseniae EF01-2]
 gi|121552367|gb|ABM56516.1| benzoyl-CoA oxygenase, component A [Verminephrobacter eiseniae
          EF01-2]
          Length = 424

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C   CPV+     E+   +  + C  C  C P CP  AI  
Sbjct: 15 IDPEICIRCN--TCEATCPVNAITHDEHNYVVRAELCNACLACIPPCPTGAIDN 66


>gi|46579107|ref|YP_009915.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603313|ref|YP_967713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46448520|gb|AAS95174.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit,
           putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563542|gb|ABM29286.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311232951|gb|ADP85805.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit,
           putative [Desulfovibrio vulgaris RCH1]
          Length = 255

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    CV VCPV    + E    +      CI C  C   CP  A   +       
Sbjct: 74  PCMQCGKPSCVSVCPVVATDKNEEGGIVSQVYPRCIGCRYCMASCPYHARYFNWFDPTWP 133


>gi|119715583|ref|YP_922548.1| respiratory nitrate reductase beta subunit [Nocardioides sp. JS614]
 gi|119536244|gb|ABL80861.1| respiratory nitrate reductase beta subunit [Nocardioides sp. JS614]
          Length = 584

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKRAEDGIVLVDQDRCRGWRMCVSGCPYKKVYF 232


>gi|332298340|ref|YP_004440262.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense
          DSM 12168]
 gi|332181443|gb|AEE17131.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense
          DSM 12168]
          Length = 863

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 6  TENCILCKHTDCVEVCPV----DCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    C+  CP+       YE   N + +   +CI CG C   C   A +   +
Sbjct: 12 NDRCIGCN--RCISGCPIPGANIAHYEDGVNRIVVDDGKCIHCGNCLATCTHGAREYIDD 69


>gi|329889339|ref|ZP_08267682.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC
           11568]
 gi|328844640|gb|EGF94204.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC
           11568]
          Length = 151

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 49  EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 106

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGVKQK 99
                         NSE+AT+     +  K   L +  + + +  K
Sbjct: 107 VEGP----------NSEFATETREELLYDKARLLDNGDRWERLIAK 142


>gi|326381404|ref|ZP_08203098.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326199651|gb|EGD56831.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 336

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP       E   + +  D C  CG C   CP   ++  ++
Sbjct: 132 SDVCKHCTHAGCLDVCPTGAMMRTEFGTVVVQADICNGCGTCVAGCPFGVVERRSD 187


>gi|325288561|ref|YP_004264742.1| methyl-accepting chemotaxis sensory transducer [Syntrophobotulus
          glycolicus DSM 8271]
 gi|324963962|gb|ADY54741.1| methyl-accepting chemotaxis sensory transducer [Syntrophobotulus
          glycolicus DSM 8271]
          Length = 639

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 6  TENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C  C    C+  CPVD        EG+  + +  + CI+CG C   C  +A +   +
Sbjct: 13 EEKCQGCNK--CIRHCPVDANVAYADEEGKIKVKVQAELCINCGECIEVCDHEAREFYDD 70


>gi|323487543|ref|ZP_08092836.1| iron-sulfur protein [Clostridium symbiosum WAL-14163]
 gi|323399144|gb|EGA91549.1| iron-sulfur protein [Clostridium symbiosum WAL-14163]
          Length = 253

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C+ C    C+++CP+            H + C  C  C   CP  AI
Sbjct: 190 SEKCVGC--GVCIKLCPMGNLSVDNQMAV-HHNRCTMCYRCICHCPHQAI 236


>gi|320325636|gb|EFW81698.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327081|gb|EFW83095.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876899|gb|EGH11048.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 290

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|302557010|ref|ZP_07309352.1| LOW QUALITY PROTEIN: nitrate reductase, beta subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302474628|gb|EFL37721.1| LOW QUALITY PROTEIN: nitrate reductase, beta subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 535

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+ E    + +  D C    +C   CP   +  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKREEDGIVLVDQDRCRGWRMCVTGCPYKKVYF 232


>gi|317133102|ref|YP_004092416.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ethanoligenens harbinense YUAN-3]
 gi|315471081|gb|ADU27685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ethanoligenens harbinense YUAN-3]
          Length = 56

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +   CI C    C   CPV C  EG+    I    C+DCG C   CPV A
Sbjct: 1  MAYKIGSECISC--GACASECPVSCISEGDGIYVIDEATCVDCGTCATVCPVAA 52


>gi|322421171|ref|YP_004200394.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320127558|gb|ADW15118.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 305

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C+  C V+ + + +    I +   C+ C  C   CP +    D E      +
Sbjct: 108 CNHCNEPACLTSCFVNAYTKTKEGAVIYNSKVCVGCRNCMIACPFNVPGYDYESATNPVI 167

Query: 68  K 68
           K
Sbjct: 168 K 168


>gi|163748504|ref|ZP_02155758.1| formate-dependent nitrite reductase complex Fe-S centers
           [Shewanella benthica KT99]
 gi|161332082|gb|EDQ02759.1| formate-dependent nitrite reductase complex Fe-S centers
           [Shewanella benthica KT99]
          Length = 231

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y       + ++ D C+ C  C   CP  
Sbjct: 99  SCQHCENAPCVTVCPTGAAYIDSETGIVGVNADMCVGCQYCIAACPYQ 146


>gi|145634223|ref|ZP_01789934.1| uridylate kinase [Haemophilus influenzae PittAA]
 gi|145268667|gb|EDK08660.1| uridylate kinase [Haemophilus influenzae PittAA]
          Length = 225

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  +    +   +  CI C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPYR 140


>gi|78357189|ref|YP_388638.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219594|gb|ABB38943.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 146

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             ++C+ C    C  +CPVD  +       +    + C  CG+C   CPV A+  + E
Sbjct: 87  DEDSCMHC--GMCTAICPVDALHMDWVARTVTFDTERCTACGLCTKVCPVRAMHVEVE 142


>gi|89896158|ref|YP_519645.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219670574|ref|YP_002461009.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89335606|dbj|BAE85201.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219540834|gb|ACL22573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 182

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C  C   +C  VCP   + +  + +  I  + C  C  C   CP  A + D
Sbjct: 53  SCNHCSSPECFRVCPEHAYIKRRDGIVLIDSNRCAGCQTCVGACPYGAPQFD 104


>gi|16272998|ref|NP_439225.1| nitrite reductase Fe-S protein [Haemophilus influenzae Rd KW20]
 gi|145627975|ref|ZP_01783776.1| nitrite reductase Fe-S protein [Haemophilus influenzae 22.1-21]
 gi|145638122|ref|ZP_01793732.1| nitrite reductase Fe-S protein [Haemophilus influenzae PittII]
 gi|260580152|ref|ZP_05847982.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|260581880|ref|ZP_05849676.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|1171766|sp|P45015|NRFC_HAEIN RecName: Full=Protein nrfC homolog; Flags: Precursor
 gi|1574621|gb|AAC22725.1| nitrite reductase, Fe-S protein (nrfC) [Haemophilus influenzae Rd
           KW20]
 gi|144979750|gb|EDJ89409.1| nitrite reductase Fe-S protein [Haemophilus influenzae 22.1-21]
 gi|145272451|gb|EDK12358.1| nitrite reductase Fe-S protein [Haemophilus influenzae PittII]
 gi|260093436|gb|EEW77369.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|260095073|gb|EEW78965.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|309751287|gb|ADO81271.1| Nitrite reductase complex, Fe-S subunit NrfC [Haemophilus
           influenzae R2866]
          Length = 225

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  +    +   +  CI C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPYR 140


>gi|315425441|dbj|BAJ47105.1| pyruvate ferredoxin oxidoreductase, gamma subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 294

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  CK   C   CP        EN   I  + C  C +C  ECP+ AI    E
Sbjct: 238 KCTGCK--VCFVYCPDSAISLDAENKPVIDYEHCKGCLICVVECPIRAISSVRE 289


>gi|296133743|ref|YP_003640990.1| nitrite and sulphite reductase 4Fe-4S region [Thermincola sp. JR]
 gi|296032321|gb|ADG83089.1| nitrite and sulphite reductase 4Fe-4S region [Thermincola potens
           JR]
          Length = 313

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
               CI C    C  VCP       E    I    C+  G C   CP DA
Sbjct: 161 DENKCISC--GLCERVCPNRAIQMAEGKPVIDKSRCLLEGNCIFSCPTDA 208


>gi|221211188|ref|ZP_03584167.1| ferredoxin [Burkholderia multivorans CGD1]
 gi|221168549|gb|EEE01017.1| ferredoxin [Burkholderia multivorans CGD1]
          Length = 87

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ ++Y
Sbjct: 59 IPHD-PQHDESHAQLMAKY 76


>gi|218678471|ref|ZP_03526368.1| NADH dehydrogenase subunit I [Rhizobium etli CIAT 894]
          Length = 160

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 57  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 114

Query: 55  I 55
           I
Sbjct: 115 I 115


>gi|15678427|ref|NP_275542.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621461|gb|AAB84905.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 341

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           YV+ +  CI CK   C++ CPVD   E +  + +    CI CG C  +CP
Sbjct: 125 YVIDDYLCIRCKK--CMKACPVDAITEKDGRVEVDQGRCIACGECLEKCP 172



 Score = 38.4 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 23/74 (31%), Gaps = 18/74 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGV 45
             +V   CI C    C EVCP D                     E    I    CI C  
Sbjct: 80  PVIVRGACIRC--GFCAEVCPTDPKTIECGENHLIREEFTIVPSEKLYVIDDYLCIRCKK 137

Query: 46  CEPECPVDAIKPDT 59
           C   CPVDAI    
Sbjct: 138 CMKACPVDAITEKD 151



 Score = 35.7 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 6   TENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPV 52
            E C+ C+   CV+ CP     Y  +  +   PD+C+ C  C   CP 
Sbjct: 262 PEKCVQCRL--CVDECPSGAITYSEDEGIVRDPDKCLRCSTCYQTCPF 307


>gi|20089624|ref|NP_615699.1| hypothetical protein MA0739 [Methanosarcina acetivorans C2A]
 gi|19914545|gb|AAM04179.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 219

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +TE C  C    C E+CP     +GE    I    C++CG C   CP DAI
Sbjct: 164 YKITEKCTAC--GICKELCPSRAISKGE-IYKIDGSICLECGRCAENCPYDAI 213


>gi|53713890|ref|YP_099882.1| ferredoxin [Bacteroides fragilis YCH46]
 gi|60682098|ref|YP_212242.1| ferredoxin [Bacteroides fragilis NCTC 9343]
 gi|253567118|ref|ZP_04844569.1| ferredoxin [Bacteroides sp. 3_2_5]
 gi|265764233|ref|ZP_06092801.1| ferredoxin [Bacteroides sp. 2_1_16]
 gi|52216755|dbj|BAD49348.1| Electron transport complex protein RnfB [Bacteroides fragilis
           YCH46]
 gi|60493532|emb|CAH08319.1| putative electron transport complex protein [Bacteroides fragilis
           NCTC 9343]
 gi|251944242|gb|EES84751.1| ferredoxin [Bacteroides sp. 3_2_5]
 gi|263256841|gb|EEZ28187.1| ferredoxin [Bacteroides sp. 2_1_16]
 gi|301163568|emb|CBW23119.1| putative electron transport complex protein [Bacteroides fragilis
           638R]
          Length = 290

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV+ CP +      N   I  ++C  C  C   CP   I     P  + 
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDYNKCKSCRKCVEVCPQHTIIELNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KEE 278



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +  ++C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEEKCTACGACVKACPKAII 188


>gi|150391343|ref|YP_001321392.1| hypothetical protein Amet_3611 [Alkaliphilus metalliredigens QYMF]
 gi|149951205|gb|ABR49733.1| protein of unknown function DUF362 [Alkaliphilus metalliredigens
           QYMF]
          Length = 387

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
              + + CI C+   C   CP +          +    CI C  C+  CPV A+     P
Sbjct: 322 PVFIHDRCIGCRD--CANSCPPEVIKMINKKPIVDLHGCIRCFCCQELCPVKAVDIHR-P 378

Query: 62  GLELWLK 68
            L  WL 
Sbjct: 379 LLMKWLA 385


>gi|328952635|ref|YP_004369969.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452959|gb|AEB08788.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 539

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           YV    C+ C    C EVCPV                             I  + CIDC 
Sbjct: 213 YVDMTKCVGC--GSCAEVCPVILPSRWNLGMKPRTCIRIIFAQAVPLRATIEKEYCIDCR 270

Query: 45  VCEPECPVDAIKPDTEPG 62
            C   C   AI  D  P 
Sbjct: 271 QCAKTCGRQAINLDDVPR 288


>gi|242399359|ref|YP_002994783.1| 2-ketoisovalerate:ferredoxin oxidoreductase (VOR) subunit delta
           [Thermococcus sibiricus MM 739]
 gi|242265752|gb|ACS90434.1| 2-ketoisovalerate:ferredoxin oxidoreductase (VOR) subunit delta
           [Thermococcus sibiricus MM 739]
          Length = 105

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M  V    CI C    C + CP    Y  E+    +  D C  CG+C  ECP  AI    
Sbjct: 45  MPVVDESKCIKCY--ICWKFCPEPAIYIKEDGYVAVDYDYCKGCGICANECPTKAISMVR 102

Query: 60  EPG 62
           E  
Sbjct: 103 EEK 105


>gi|226227442|ref|YP_002761548.1| putative oxidoreductase [Gemmatimonas aurantiaca T-27]
 gi|226090633|dbj|BAH39078.1| putative oxidoreductase [Gemmatimonas aurantiaca T-27]
          Length = 1028

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  C  VCPV   Y   + L     + C+    C   CP      +     E 
Sbjct: 851 CQQCGNAPCEPVCPVYATYHSPDGLNVQVYNRCVGTRYCSNNCPYKVRYFNWFGYGEP 908


>gi|239617513|ref|YP_002940835.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
 gi|239506344|gb|ACR79831.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
          Length = 282

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  + C LC   +C  VC        +  + +    C  CG C   CP  AI    + 
Sbjct: 64  VNKDKCTLC--GECARVCQFGAISVFKTGVMVFDSLCHGCGACSIICPTKAIYEVPKE 119


>gi|119476464|ref|ZP_01616815.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2143]
 gi|119450328|gb|EAW31563.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2143]
          Length = 201

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I  
Sbjct: 114 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCIDM 168


>gi|218884327|ref|YP_002428709.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus kamchatkensis 1221n]
 gi|218765943|gb|ACL11342.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus kamchatkensis 1221n]
          Length = 166

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +  +C+ C    C++VCP             +   +CI C  C   CP    + D
Sbjct: 51  IPVSCMHCAKAPCIDVCPTGAMTRDSEGAVYVVASKCIGCMACLYACPFGIPELD 105


>gi|189485409|ref|YP_001956350.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
 gi|170287368|dbj|BAG13889.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
          Length = 57

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + E  C+ C    C   CPV    + E+   I+ D+C  CGVCE  CPV AI
Sbjct: 1  MAYQINENACVGC--GACAGSCPVSAIEQKEDKYTINSDKCKGCGVCESTCPVSAI 54


>gi|168209486|ref|ZP_02635111.1| nitroreductase family protein [Clostridium perfringens B str.
          ATCC 3626]
 gi|170712325|gb|EDT24507.1| nitroreductase family protein [Clostridium perfringens B str.
          ATCC 3626]
          Length = 272

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + C++CG C   CP +A+  D++
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMLDGKAHIKNESCMECGHCIAICPKEAV-SDSD 57

Query: 61 PGLELWLKINSEYAT 75
            +    + N +   
Sbjct: 58 YDMSKIQEYNKDSFD 72


>gi|157964943|ref|YP_001499767.1| NADH dehydrogenase subunit I [Rickettsia massiliae MTU5]
 gi|157844719|gb|ABV85220.1| NADH dehydrogenase I chain I [Rickettsia massiliae MTU5]
          Length = 162

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 60  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQAACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 118 VEGP----------NFEFASLTHTALIYDKERLLQNGDRWE 148


>gi|154495028|ref|ZP_02034033.1| hypothetical protein PARMER_04074 [Parabacteroides merdae ATCC
           43184]
 gi|154085578|gb|EDN84623.1| hypothetical protein PARMER_04074 [Parabacteroides merdae ATCC
           43184]
          Length = 336

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 218 ACIGC--GKCAKECPFEAITVENNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 21/84 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--------IHPDE-----------CIDCG 44
           V  + C  C    CV+ CP +     +            ++ D+           CI CG
Sbjct: 166 VDEDKCTSC--GACVKACPKNIIELRKKGPKSRRVFVSCVNKDKGGVAKKACANACIGCG 223

Query: 45  VCEPECPVDAIKPDTEPGLELWLK 68
            C  ECP +AI  +       + K
Sbjct: 224 KCAKECPFEAITVENNVAYIDYTK 247


>gi|189423641|ref|YP_001950818.1| electron transfer flavoprotein subunit alpha [Geobacter lovleyi
          SZ]
 gi|189419900|gb|ACD94298.1| Electron transfer flavoprotein alpha subunit [Geobacter lovleyi
          SZ]
          Length = 443

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    C   CPV+C    E     +  ++CI C  C   CP  A++    P  +  
Sbjct: 21 KCIAC-GARCESSCPVNCISMNEAGEPVVDTEKCIGCLKCVKVCPAQALEMFFTPEEQKI 79

Query: 67 LK 68
          L+
Sbjct: 80 LE 81



 Score = 37.3 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDC 25
            V TE CI C    CV+VCP   
Sbjct: 46 PVVDTEKCIGCLK--CVKVCPAQA 67


>gi|56475501|ref|YP_157090.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Aromatoleum aromaticum EbN1]
 gi|56311544|emb|CAI06189.1| Indolepyruvate ferredoxin oxidoreductase,subunit alpha [Aromatoleum
           aromaticum EbN1]
          Length = 623

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 16/73 (21%)

Query: 2   TYVV-TENCILCKHTDCVEV-CPVDCFYEGEN------------FLAIHPDECIDCGVCE 47
            Y+V  + C  C   +CV+V CP       +             F+ I    C  CG+C 
Sbjct: 541 PYLVKEDRCTGC--GNCVDVGCPAIHVTRRDKEVKASGKEVDLSFVRIDTSACTGCGLCV 598

Query: 48  PECPVDAIKPDTE 60
             C  +AI     
Sbjct: 599 QPCAPEAIIHAEP 611


>gi|148257859|ref|YP_001242444.1| benzoyl-CoA oxygenase, component A [Bradyrhizobium sp. BTAi1]
 gi|146410032|gb|ABQ38538.1| benzoyl-CoA oxygenase, component A [Bradyrhizobium sp. BTAi1]
          Length = 393

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C E CP D      N   +   +C  C  C   CP  +I  
Sbjct: 10 IDPEICIRCN--TCEETCPEDAITHDNNNYVVDATKCNFCMDCIQPCPTGSIDN 61


>gi|238790208|ref|ZP_04633984.1| Electron transport complex protein rnfB [Yersinia frederiksenii
           ATCC 33641]
 gi|238721746|gb|EEQ13410.1| Electron transport complex protein rnfB [Yersinia frederiksenii
           ATCC 33641]
          Length = 207

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIEM 164


>gi|224368544|ref|YP_002602707.1| HdrA3' [Desulfobacterium autotrophicum HRM2]
 gi|223691260|gb|ACN14543.1| HdrA3' [Desulfobacterium autotrophicum HRM2]
          Length = 608

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C  C   +CV  CP +        G     ++P  C  CG C   CP ++I+
Sbjct: 510 VNADRCSGC--GNCVAACPFEACRLEPGNGRYHCRVNPFRCTGCGTCVAVCPNNSIQ 564


>gi|229587157|ref|YP_002845658.1| NADH dehydrogenase subunit I [Rickettsia africae ESF-5]
 gi|259514784|sp|C3PLS5|NUOI_RICAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|228022207|gb|ACP53915.1| NADH dehydrogenase I chain I [Rickettsia africae ESF-5]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKERLLQNGDRWE 145


>gi|126459993|ref|YP_001056271.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249714|gb|ABO08805.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 369

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C LC    CV VCP D     E  L I P  CI CG+C  +CP   ++    P    +
Sbjct: 259 CTLC--GACVNVCPTDALSLREFELRIVPALCIGCGLCAEKCPEGVMRVSESPSPAPY 314



 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 4   VVTE--NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           VV +   CI C    C + CP       E     +    C DCG+C   CPV+AI+ 
Sbjct: 80  VVADSGKCIWC--GICAKACPFSAVKYAERKYVEVDYGLCADCGLCNAVCPVEAIQM 134


>gi|15610289|ref|NP_217669.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Rv]
 gi|15842729|ref|NP_337766.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis CDC1551]
 gi|148663008|ref|YP_001284531.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra]
 gi|167970177|ref|ZP_02552454.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra]
 gi|215405151|ref|ZP_03417332.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 02_1987]
 gi|215413020|ref|ZP_03421721.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 94_M4241A]
 gi|215447442|ref|ZP_03434194.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|218754932|ref|ZP_03533728.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis GM 1503]
 gi|254233772|ref|ZP_04927097.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis C]
 gi|254552243|ref|ZP_05142690.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|289759283|ref|ZP_06518661.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|289763336|ref|ZP_06522714.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis GM 1503]
 gi|294995504|ref|ZP_06801195.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 210]
 gi|297635796|ref|ZP_06953576.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN 4207]
 gi|297732793|ref|ZP_06961911.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN R506]
 gi|313660126|ref|ZP_07817006.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN V2475]
 gi|6647663|sp|P95173|NUOI_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633530|sp|A5U7G9|NUOI_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|1781215|emb|CAB06286.1| PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN I) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883051|gb|AAK47580.1| NADH dehydrogenase I, I subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|124599301|gb|EAY58405.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis C]
 gi|148507160|gb|ABQ74969.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra]
 gi|289710842|gb|EFD74858.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis GM 1503]
 gi|289714847|gb|EFD78859.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|326902623|gb|EGE49556.1| hypothetical protein TBPG_00472 [Mycobacterium tuberculosis W-148]
          Length = 211

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 79  EKCIGCEL--CAWACPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEAC 136

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 137 PTRALTM 143


>gi|113970402|ref|YP_734195.1| electron transport complex protein RnfB [Shewanella sp. MR-4]
 gi|123324999|sp|Q0HIH9|RNFB_SHESM RecName: Full=Electron transport complex protein rnfB
 gi|113885086|gb|ABI39138.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. MR-4]
          Length = 193

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM 161


>gi|148826320|ref|YP_001291073.1| Fe-S-cluster-containing hydrogenase subunit NrfC [Haemophilus
           influenzae PittEE]
 gi|229846097|ref|ZP_04466209.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 7P49H1]
 gi|148716480|gb|ABQ98690.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae PittEE]
 gi|229811101|gb|EEP46818.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 7P49H1]
 gi|309973461|gb|ADO96662.1| Nitrite reductase complex, Fe-S subunit NrfC [Haemophilus
           influenzae R2846]
          Length = 225

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  +    +   +  CI C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPYR 140


>gi|333030659|ref|ZP_08458720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides coprosuis DSM 18011]
 gi|332741256|gb|EGJ71738.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides coprosuis DSM 18011]
          Length = 261

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C  +CPV    +    L   P++CI CG C   CP  +     E   E  
Sbjct: 186 ETCNRC--GKCARLCPVGAIPKDAPQLT-DPNKCISCGRCLVICPQKSRAFRGELYEE-- 240

Query: 67  LKINSEYATQWPNITTKKES 86
                + A        +KE 
Sbjct: 241 -----KLAFFLKTFGERKEP 255


>gi|320100269|ref|YP_004175861.1| 4Fe-4S ferredoxin, iron-sulfur-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319752621|gb|ADV64379.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 163

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +  +C+ C    C++VCP        +    +   +CI C  C   CP    + D
Sbjct: 48  IPVSCMHCAKAPCIDVCPTGAMTRDSDGAVYVAASKCIGCMACLYACPFGIPELD 102


>gi|289823871|ref|ZP_06543477.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
          Length = 181

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|289192298|ref|YP_003458239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938748|gb|ADC69503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 657

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV    C  C    C  VCP++   E +                      I  D CI CG
Sbjct: 239 YVDENICTGC--GACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTIDMDHCIRCG 296

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +CE  C   AIK D +P    
Sbjct: 297 LCEKACGPGAIKYDQKPEEIK 317



 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + C  C    C ++CP +        G     ++   C  CG C   CP  A++
Sbjct: 576 AVVDEDVCGGC--QVCAKMCPYNAITYVEKDGHLVAQVNDVACKGCGACAGACPSGAMQ 632


>gi|289191767|ref|YP_003457708.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938217|gb|ADC68972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 163

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    C+E+CPVD   + +   F+ I  ++C+ CG C+  CP +AI
Sbjct: 34 VKEDKCISC--GKCIEICPVDAITYSKDGLFIVIDKEKCVFCGRCKKVCPTNAI 85



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++E C  C    C+  CP +   E  + + I  ++C  CG CE  CP++AI
Sbjct: 112 ISERCASCL--VCLRNCPFNAIEEYGSKIRIDINKCELCGRCEELCPLNAI 160


>gi|270296346|ref|ZP_06202546.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273750|gb|EFA19612.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 315

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C +  CV+ CP     +G+    +  ++CI C  C   CP  A   D  
Sbjct: 243 VDAERCTHCGY--CVKHCPAGAIIKGDECNTV-AEKCIKCCACVKGCPQKARTYDMP 296



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 2/30 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           V E CI C    CV+ CP         F  
Sbjct: 272 VAEKCIKC--CACVKGCPQKARTYDMPFAV 299


>gi|288931383|ref|YP_003435443.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893631|gb|ADC65168.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 187

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           C+ C    C++VCPV+  ++ E    + +  D CI CG C   CP  A
Sbjct: 56  CLHCNDPPCMKVCPVNAIWKREEDGIVLVKKDICIGCGYCASACPFGA 103


>gi|226939927|ref|YP_002795000.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein [Laribacter
           hongkongensis HLHK9]
 gi|226714853|gb|ACO73991.1| Probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Laribacter hongkongensis HLHK9]
          Length = 474

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI C  C   C     K     GL  +  
Sbjct: 268 CVNC--GICVQVCPTGIDIRDGLQY-----ECIGCAACIDACDEVMDKMKYPRGLIRYTT 320

Query: 69  INSEYATQWP 78
            N+  A Q+P
Sbjct: 321 ENA-LAKQYP 329


>gi|163746211|ref|ZP_02153570.1| NADH dehydrogenase subunit I [Oceanibulbus indolifex HEL-45]
 gi|161380956|gb|EDQ05366.1| NADH dehydrogenase subunit I [Oceanibulbus indolifex HEL-45]
          Length = 164

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEAREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFSTETREEL------YYDKAKLLDNGDRWESE 152


>gi|118466276|ref|YP_879707.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium avium 104]
 gi|118167563|gb|ABK68460.1| 4Fe-4S binding domain protein [Mycobacterium avium 104]
          Length = 330

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP 
Sbjct: 133 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPF 180


>gi|21228195|ref|NP_634117.1| indolepyruvate oxidoreductase subunit [Methanosarcina mazei Go1]
 gi|20906647|gb|AAM31789.1| Indolepyruvate oxidoreductase, subunit [Methanosarcina mazei Go1]
          Length = 600

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 2   TYVV-TENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+V  E C  CK   CV+  CP   F E      I    C  CGVC   C  DAI
Sbjct: 543 PYIVDPEKCEGCK--QCVKFGCPAIEFDEENKCAVI-TSLCSGCGVCAQICKFDAI 595


>gi|332795704|ref|YP_004457204.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332693439|gb|AEE92906.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidianus
           hospitalis W1]
          Length = 653

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + C  CK   C + CPV      +  +    +   CI CG C   CP + ++   
Sbjct: 586 DTCKSCKTIQCEDACPVKIPIRTDVISKGYTNRISCIGCGDCVEACPYNNLEIID 640


>gi|331667858|ref|ZP_08368715.1| respiratory nitrate reductase 2 beta chain [Escherichia coli TA271]
 gi|331064822|gb|EGI36724.1| respiratory nitrate reductase 2 beta chain [Escherichia coli TA271]
          Length = 306

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           M Y+    C  C +  CV  CP    Y+ E    + I  D+C    +C   CP  
Sbjct: 176 MMYL-PRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYK 229


>gi|323703106|ref|ZP_08114760.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531883|gb|EGB21768.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 169

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C  C +  C+  CP       E +  + I  D C  C  C   CP  A + D
Sbjct: 58  SCFHCDNPWCIAACPNGAIQKREEDGVIFIDQDRCAGCKSCIMACPWSAPQWD 110


>gi|316973508|gb|EFV57088.1| NADH-quinone oxidoreductase subunit I [Trichinella spiralis]
          Length = 165

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 83  EERCIACKL--CEAICPAQAITIEAEERPDGSRRTTRYDIDMCKCIYCGLCQEACPVDAI 140


>gi|288932668|ref|YP_003436728.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894916|gb|ADC66453.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 160

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C+ +CPV   Y  E   A+   PD CI C  C   CP  AI  D +
Sbjct: 53  CEHCEEAPCMIICPVKAIYRDEETNAVLLDPDICIGCKQCMVVCPFGAIGFDED 106


>gi|237750522|ref|ZP_04581002.1| iron-sulfur protein [Helicobacter bilis ATCC 43879]
 gi|229374052|gb|EEO24443.1| iron-sulfur protein [Helicobacter bilis ATCC 43879]
          Length = 345

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            V   C+ C    C ++CP     + +N    I    C     C   CP 
Sbjct: 130 FVPRRCMHCDDPTCQKICPFGIIGKDDNNAVNIDEHYCFGGAKCRDVCPW 179


>gi|223007089|gb|ACM77783.1| nitrite oxidoreductase [uncultured bacterium]
          Length = 138

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I   +C     C   CP      + 
Sbjct: 86  CNHCLNPCCVASCPSGALYKRGEDGIVLIDQKKCRAWRSCVSACPYKKTYFNW 138


>gi|167855542|ref|ZP_02478304.1| translation initiation factor IF-1 [Haemophilus parasuis 29755]
 gi|219871281|ref|YP_002475656.1| nitrate reductase [Haemophilus parasuis SH0165]
 gi|167853343|gb|EDS24595.1| translation initiation factor IF-1 [Haemophilus parasuis 29755]
 gi|219691485|gb|ACL32708.1| nitrate reductase [Haemophilus parasuis SH0165]
          Length = 225

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++C  C +  CV VCP    +  +    + ++PD C+ C  C   CP      +
Sbjct: 95  QSCQHCSNAPCVSVCPTGASFIDKATGIVDVNPDLCVGCAYCIAVCPYRVRYIE 148


>gi|157148263|ref|YP_001455581.1| hypothetical protein CKO_04080 [Citrobacter koseri ATCC BAA-895]
 gi|157085468|gb|ABV15146.1| hypothetical protein CKO_04080 [Citrobacter koseri ATCC BAA-895]
          Length = 170

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 18 CHHCEDAPCAVVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 66


>gi|41406467|ref|NP_959303.1| hypothetical protein MAP0369 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394816|gb|AAS02686.1| hypothetical protein MAP_0369 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 324

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP 
Sbjct: 127 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPF 174


>gi|90578562|ref|ZP_01234372.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum
           S14]
 gi|90439395|gb|EAS64576.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum
           S14]
          Length = 551

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C    C++ CP          +AI P  C   G C   CP +AI         
Sbjct: 189 GCD--RCLDACPACALSSDGAEIAIDPYLCQGVGTCATACPTEAITYALPDPQN 240



 Score = 41.5 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            T +C LC    CV VCP    +       L    ++C+ CG+CE  CP   I  +    
Sbjct: 415 DTTDCTLC--MSCVAVCPTRALHAIGDRPGLLFIEEDCVQCGMCEKACPEKVISLEPRFN 472

Query: 63  LELWLKINSEYATQWP 78
            +   +  +    + P
Sbjct: 473 WDWHARKEARLVHEEP 488


>gi|325830836|ref|ZP_08164220.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325487243|gb|EGC89686.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 214

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+T+ C  C    C + CP +   E     AI  + C+ CG+C   C   AI
Sbjct: 161 FVITDRCQEC--GACADACP-EACIEEGPPYAIVQEHCLRCGLCRETCSFGAI 210


>gi|312126857|ref|YP_003991731.1| hypothetical protein Calhy_0621 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776876|gb|ADQ06362.1| protein of unknown function DUF362 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C   +C   CP            +   +CI C  C   CP  AI
Sbjct: 318 CIGC--AECFNACPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAI 362


>gi|266620818|ref|ZP_06113753.1| nitroreductase family protein [Clostridium hathewayi DSM 13479]
 gi|288867557|gb|EFC99855.1| nitroreductase family protein [Clostridium hathewayi DSM 13479]
          Length = 257

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEP 61
          +  + C+ C    C + C       G     I  D+C+ CG C   CP +A  I      
Sbjct: 8  IDPDKCVGC--GICAKACAAHNIVIGNKRAKIRMDDCVMCGHCTAVCPKNAVTISGYDTE 65

Query: 62 GLEL 65
           +E 
Sbjct: 66 QIEK 69


>gi|153806624|ref|ZP_01959292.1| hypothetical protein BACCAC_00894 [Bacteroides caccae ATCC 43185]
 gi|149131301|gb|EDM22507.1| hypothetical protein BACCAC_00894 [Bacteroides caccae ATCC 43185]
          Length = 300

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV+ CP +      N   I PD+C  C  C   CP + I     P  + 
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDPDKCKSCRKCVEVCPQNTIIELNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KEE 278



 Score = 35.3 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +   +C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAII 188


>gi|332999468|gb|EGK19053.1| hydrogenase-4 component A [Shigella flexneri VA-6]
          Length = 203

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|289192762|ref|YP_003458703.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
 gi|288939212|gb|ADC69967.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
          Length = 619

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C EVC V+           + + C+ CG C   CP +A +   E  +
Sbjct: 490 VNEEKCNGC--GRCAEVCKVEAIDVRGEISYTNYNVCVGCGKCIKNCPNEAREVKEEGYM 547


>gi|254773429|ref|ZP_05214945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 330

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP 
Sbjct: 133 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPF 180


>gi|256828656|ref|YP_003157384.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577832|gb|ACU88968.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 660

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V    C+ C    C++ CP     E     G     +    C  CG+C   CP  AI+ +
Sbjct: 579 VNPARCVGC--GKCIQTCPFGAIKEVQDRFGNPKAEVIDTVCQGCGICTVTCPQGAIQLE 636

Query: 59  TEPGLELWLKINS 71
                ++  ++N+
Sbjct: 637 HFTDNQILAEVNA 649


>gi|255659932|ref|ZP_05405341.1| conserved domain protein [Mitsuokella multacida DSM 20544]
 gi|260847803|gb|EEX67810.1| conserved domain protein [Mitsuokella multacida DSM 20544]
          Length = 56

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + ++CI C    C   CPV+   EG     I  D+C++CG C   CPV AI
Sbjct: 1  MAYKINDDCISC--GSCAATCPVEAISEGAEHYEIDADKCVECGACAAGCPVSAI 53


>gi|158520606|ref|YP_001528476.1| hypothetical protein Dole_0589 [Desulfococcus oleovorans Hxd3]
 gi|158509432|gb|ABW66399.1| protein of unknown function DUF362 [Desulfococcus oleovorans Hxd3]
          Length = 385

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           VV   C  C    CV  CPV+     E  F       CI C  C+  CP  AI
Sbjct: 319 VVEAVCKQC--GICVSHCPVNAMTMAEGEFPRADAAACIHCYCCQEMCPEHAI 369


>gi|109453534|gb|ABG33917.1| nitrate reductase beta subunit [Bacillus subtilis]
          Length = 488

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWQTNKAE 240


>gi|32267094|ref|NP_861126.1| NADH dehydrogenase subunit I [Helicobacter hepaticus ATCC 51449]
 gi|81665422|sp|Q7VFT0|NUOI_HELHP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|32263146|gb|AAP78192.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
          Length = 212

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 12/64 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG+C   CP  AI
Sbjct: 82  NERCIGC--GLCEKICTSNCIRIITDKGEDGRKKILNYSINFGRCIYCGLCAEVCPELAI 139

Query: 56  KPDT 59
               
Sbjct: 140 VHGD 143


>gi|15669061|ref|NP_247865.1| coenzyme F420-reducing hydrogenase subunit beta [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2496134|sp|Q58280|Y870_METJA RecName: Full=Uncharacterized protein MJ0870
 gi|1591554|gb|AAB98876.1| coenzyme F420-reducing hydrogenase, beta subunit (frhB)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 620

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E C  C    C EVC V+           + + C+ CG C   CP +A +   E  
Sbjct: 490 VNEEKCNGC--GRCAEVCKVEAIDIRGETSYTNYNVCVGCGKCIKNCPNEAREVKEEGY 546



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 2/65 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V +  C  C    C  VCP       E    I        G+C   CP  +         
Sbjct: 10 VDSGVCARC--GTCTIVCPNGILTFDERPKLIDECLRKGHGMCFEVCPRVSSAKYQIKIR 67

Query: 64 ELWLK 68
          E + +
Sbjct: 68 EKFYE 72


>gi|328952636|ref|YP_004369970.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452960|gb|AEB08789.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 780

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +  E C  CK   C + CP         EGE    +    C  CGVC   CP +A+    
Sbjct: 566 IDPEKCTGCK--RCFQQCPFQAIELYDREGETKARVIVAACKGCGVCAGACPAEAVTAYG 623

Query: 60  EPGLELWLKINSEYAT 75
                +  +I+   A 
Sbjct: 624 FTDEMILAQIDEALAE 639



 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 5   VTENCILCKHTDCVEVCPVD----------CFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V   C LC    C  VCPV             +       I  ++C  CG C   CP +A
Sbjct: 242 VGATCNLC--GQCAAVCPVQINDHAAIYLPSPHAFPTGYVIDSEQCTRCGACLEVCPQEA 299

Query: 55  IKPDTEPGLELW 66
           I  ++ P L  +
Sbjct: 300 ITLESGPTLYTF 311


>gi|330813990|ref|YP_004358229.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487085|gb|AEA81490.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 161

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAVCPAQAISIDAELKEDGSRKTTRYDIDMVKCIYCGLCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + + +  + +  
Sbjct: 117 VQ--GPNFEFSTETREEL------YYNKDKLMDNGDRWEKE 149


>gi|308051341|ref|YP_003914907.1| thiosulfate reductase subunit beta [Ferrimonas balearica DSM 9799]
 gi|307633531|gb|ADN77833.1| thiosulfate reductase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C++  CV VCP    Y GE+ +  I  D+C+ C  C   CP      + E
Sbjct: 59  SCEQCENAPCVHVCPTGAAYVGEDGIVSIKEDKCVGCLYCVAACPYKVRFINPE 112


>gi|294101124|ref|YP_003552982.1| electron transport complex, RnfABCDGE type, B subunit
           [Aminobacterium colombiense DSM 12261]
 gi|293616104|gb|ADE56258.1| electron transport complex, RnfABCDGE type, B subunit
           [Aminobacterium colombiense DSM 12261]
          Length = 266

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C ++CP       +N   I+PD C  C +C  +CP  AI
Sbjct: 217 CIGC--GLCAKLCPSQAITMKDNLPVINPDLCTGCKICAMKCPARAI 261



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 6   TENC-ILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ C   C     CV  C  D     +    +    C  CG C   CP D I
Sbjct: 136 TKACKNGCLGFGSCVTACAFDAISVEDGVAVVDESLCTGCGACVAACPRDVI 187


>gi|241763110|ref|ZP_04761170.1| cytochrome c oxidase accessory protein CcoG [Acidovorax delafieldii
           2AN]
 gi|241367735|gb|EER61989.1| cytochrome c oxidase accessory protein CcoG [Acidovorax delafieldii
           2AN]
          Length = 482

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCPV               ECI CG+C   C     K     GL  +  
Sbjct: 276 CIDC--TLCVQVCPVGIDIRKGLQY-----ECIGCGLCVDACNTVMDKMHYPRGLIRYST 328

Query: 69  IN 70
            N
Sbjct: 329 QN 330


>gi|255654750|ref|ZP_05400159.1| putative reductase [Clostridium difficile QCD-23m63]
 gi|296449496|ref|ZP_06891273.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP08]
 gi|296878181|ref|ZP_06902196.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP07]
 gi|296261560|gb|EFH08378.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP08]
 gi|296430934|gb|EFH16766.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP07]
          Length = 273

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGC--GMCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 VEYNRESFELEP 75


>gi|218782454|ref|YP_002433772.1| hypothetical protein Dalk_4626 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763838|gb|ACL06304.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 387

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
           E C LC    C+++CP     +   G        ++CI C  C   CP  AI
Sbjct: 325 EKCTLCY--QCMKICPAGAISKAGSGGKKPTYDYNKCIRCYCCMEVCPEAAI 374


>gi|145589679|ref|YP_001156276.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048085|gb|ABP34712.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 230

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    +    C  C +C P CPVD I  
Sbjct: 90  AFIDPQKCIGC--TLCIQACPVDAIIGASKQMHVVLDACCTGCDLCIPPCPVDCISM 144


>gi|308049766|ref|YP_003913332.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799]
 gi|307631956|gb|ADN76258.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799]
          Length = 410

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C  C    C + CP             +  D+C+ CG C   CP DAI
Sbjct: 21 KCKGCD--ACKKFCPTGAIEGASGAAHRVDHDKCVGCGQCMINCPFDAI 67


>gi|257790944|ref|YP_003181550.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474841|gb|ACV55161.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 191

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           + +T +C  C    CV  CP    ++ ++    H  D C+ C  C   CP  A + D + 
Sbjct: 52  FHLTVSCNHCDDPACVAGCPTGAMFKSDDGTVQHVDDCCVVCRNCMITCPYGAPQFDEDE 111

Query: 62  GL 63
            +
Sbjct: 112 NM 113


>gi|206890760|ref|YP_002249173.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A,
           selenocysteine-containing [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742698|gb|ACI21755.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A,
           selenocysteine-containing [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 666

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C  C    CV +CP        Y+G+    I P  C  CGVC   CP  AIK + 
Sbjct: 593 VDRDKCSSC--GVCVPLCPYSAIRIEEYKGKEKAYIEPALCAGCGVCASACPSRAIKFNG 650

Query: 60  EPGLELWLKINS 71
               ++  +I++
Sbjct: 651 FTTEQIMAQIDA 662


>gi|170765592|ref|ZP_02900403.1| formate hydrogenlyase, subunit B [Escherichia albertii TW07627]
 gi|170124738|gb|EDS93669.1| formate hydrogenlyase, subunit B [Escherichia albertii TW07627]
          Length = 203

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+        + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNAITRVNGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|167753237|ref|ZP_02425364.1| hypothetical protein ALIPUT_01508 [Alistipes putredinis DSM
          17216]
 gi|167659168|gb|EDS03298.1| hypothetical protein ALIPUT_01508 [Alistipes putredinis DSM
          17216]
          Length = 287

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTE 60
          + T +CI C    CV+VCP     + +    I   + D CI CG C   CP  +++  + 
Sbjct: 7  IDTASCIRC--GKCVKVCPAWIMTQAKPGDPIGLRNIDSCIVCGHCAAVCPTGSVRHSSF 64

Query: 61 PGLE 64
          P  +
Sbjct: 65 PPDK 68


>gi|73988225|ref|XP_852209.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) [Canis familiaris]
          Length = 253

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK      VCP                      I+  +CI CG C+  CPVDAI
Sbjct: 151 EERCIACKLH--EAVCPAQAITIQAEPRADGSRRTTRYDIYMTKCIYCGFCQEACPVDAI 208

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K    
Sbjct: 209 VEGP----------NFEFSTETHEELLYNKEKLLSNGDKWGAE 241


>gi|78222936|ref|YP_384683.1| aldo/keto reductase family oxidoreductase [Geobacter
           metallireducens GS-15]
 gi|78194191|gb|ABB31958.1| Oxidoreductase, aldo/keto reductase family [Geobacter
           metallireducens GS-15]
          Length = 316

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    CVE C             +    CI CG C   CP   I
Sbjct: 269 CKGC--GGCVEACASGALTVVNGKAVLDEAACILCGYCAASCPEFII 313


>gi|45359260|ref|NP_988817.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2]
 gi|172046136|sp|Q6LWL2|HDRA_METMP RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
 gi|45048135|emb|CAF31253.1| heterodisulfide reductase, subunit A [Methanococcus maripaludis S2]
          Length = 658

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV  + C  C    C   CP++   E +                      I  + CIDCG
Sbjct: 240 YVDEDTCTGC--GACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKEHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   C  +A++ D +P  
Sbjct: 298 LCAKVCCAEAVRYDQKPQE 316



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAI---HPDECIDCGVCEPECPVDAIK 56
             V  E C  CK   C  +CP +   YE ++   +       C  CG C   CP  A++
Sbjct: 577 ATVNEEVCGGCK--VCALMCPYNAITYEEKDGHLVAITDDVACKGCGACAAACPSGAMQ 633


>gi|15893152|ref|NP_360866.1| NADH dehydrogenase subunit I [Rickettsia conorii str. Malish 7]
 gi|20139030|sp|Q92G94|NUOI_RICCN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|15620362|gb|AAL03767.1| NADH dehydrogenase I chain I [Rickettsia conorii str. Malish 7]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKERLLQNGDRWE 145


>gi|301027883|ref|ZP_07191183.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301647854|ref|ZP_07247638.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|312969696|ref|ZP_07783879.1| 4Fe-4S binding domain protein [Escherichia coli 1827-70]
 gi|299879014|gb|EFI87225.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301074044|gb|EFK88850.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|310337981|gb|EFQ03070.1| 4Fe-4S binding domain protein [Escherichia coli 1827-70]
 gi|315618866|gb|EFU99449.1| 4Fe-4S binding domain protein [Escherichia coli 3431]
 gi|323163477|gb|EFZ49303.1| 4Fe-4S binding domain protein [Escherichia coli E128010]
          Length = 170

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 83  DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 138


>gi|224367282|ref|YP_002601445.1| HydA1 [Desulfobacterium autotrophicum HRM2]
 gi|223689998|gb|ACN13281.1| HydA1 [Desulfobacterium autotrophicum HRM2]
          Length = 464

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +    C  C    C E+CPV            I   +CI CG C        I    E  
Sbjct: 8  IDEALCTGC--GRCKEICPVGAVSGTPGQPHKIDQKKCIICGQCVQ------ICSGYESI 59

Query: 63 LELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
          LE +    +    Q   + T +E L +A     VK
Sbjct: 60 LEEYAIDRATRLEQRGMLDTVQEPLFAAHYRGDVK 94


>gi|206901606|ref|YP_002250206.1| dihydroorotate dehydrogenase superfamily [Dictyoglomus thermophilum
           H-6-12]
 gi|206740709|gb|ACI19767.1| dihydroorotate dehydrogenase superfamily [Dictyoglomus thermophilum
           H-6-12]
          Length = 390

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + C  C    C +VC  D   E E    I  D C  CG+C   CPV AI  
Sbjct: 327 AYINPDLCTSC--GICKKVCIYDAPVEKEGK-YIITDLCDGCGLCVKLCPVRAISM 379


>gi|194289439|ref|YP_002005346.1| benzoyl-CoA oxygenase component a [Cupriavidus taiwanensis LMG
          19424]
 gi|193223274|emb|CAQ69279.1| Benzoyl-CoA oxygenase component A [Cupriavidus taiwanensis LMG
          19424]
          Length = 414

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C + CP+D     +    +  D C  C  C   CP  AI  
Sbjct: 12 IDPEICIRCN--TCEDTCPIDAITHDDRNYVVRADVCNGCNACLSPCPTGAIDN 63


>gi|164688745|ref|ZP_02212773.1| hypothetical protein CLOBAR_02392 [Clostridium bartlettii DSM
          16795]
 gi|164602221|gb|EDQ95686.1| hypothetical protein CLOBAR_02392 [Clostridium bartlettii DSM
          16795]
          Length = 573

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C    CV VCPVD          I  D CI CG C   CP  
Sbjct: 10 CRGCY--ACVRVCPVDAIVIKGGQADILMDRCILCGRCSKACPQH 52


>gi|31794329|ref|NP_856822.1| NADH dehydrogenase subunit I [Mycobacterium bovis AF2122/97]
 gi|121639036|ref|YP_979260.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|215428609|ref|ZP_03426528.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T92]
 gi|215432112|ref|ZP_03430031.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
 gi|219559199|ref|ZP_03538275.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T17]
 gi|224991528|ref|YP_002646217.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260188194|ref|ZP_05765668.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis CPHL_A]
 gi|260202300|ref|ZP_05769791.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46]
 gi|260206492|ref|ZP_05773983.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85]
 gi|289444718|ref|ZP_06434462.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46]
 gi|289448833|ref|ZP_06438577.1| NADH dehydrogenase I chain I nuoI [Mycobacterium tuberculosis
           CPHL_A]
 gi|289571364|ref|ZP_06451591.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           T17]
 gi|289575865|ref|ZP_06456092.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85]
 gi|289751831|ref|ZP_06511209.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           T92]
 gi|289755272|ref|ZP_06514650.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
 gi|81712063|sp|Q7TX57|NUOI_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633526|sp|A1KNE9|NUOI_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772595|sp|C1AGS0|NUOI_MYCBT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|31619925|emb|CAD95269.1| PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN I) [Mycobacterium bovis AF2122/97]
 gi|121494684|emb|CAL73165.1| Probable NADH dehydrogenase I (chain I) nuoI [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224774643|dbj|BAH27449.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289417637|gb|EFD14877.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46]
 gi|289421791|gb|EFD18992.1| NADH dehydrogenase I chain I nuoI [Mycobacterium tuberculosis
           CPHL_A]
 gi|289540296|gb|EFD44874.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85]
 gi|289545118|gb|EFD48766.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           T17]
 gi|289692418|gb|EFD59847.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           T92]
 gi|289695859|gb|EFD63288.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
          Length = 211

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 79  EKCIGCEL--CAWACPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEAC 136

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 137 PTRALTM 143


>gi|14521676|ref|NP_127152.1| formate dehydrogenase iron-sulfur subunit related protein
          [Pyrococcus abyssi GE5]
 gi|5458895|emb|CAB50382.1| Oxidoreductase iron-sulfur protein [Pyrococcus abyssi GE5]
          Length = 164

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          NC  C+   C+EVCP    Y   +N +A  P +CI C +C   CP    K D 
Sbjct: 45 NCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDE 97


>gi|323138153|ref|ZP_08073226.1| NADH-quinone oxidoreductase, chain I [Methylocystis sp. ATCC 49242]
 gi|322396615|gb|EFX99143.1| NADH-quinone oxidoreductase, chain I [Methylocystis sp. ATCC 49242]
          Length = 162

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGYCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E         TK+  L + A+ +  
Sbjct: 117 IV--EGPNQEFATETREEL------YYTKERLLENGARWERE 150


>gi|308175453|ref|YP_003922158.1| nitrate reductase subunit beta [Bacillus amyloliquefaciens DSM 7]
 gi|307608317|emb|CBI44688.1| nitrate reductase (beta subunit) [Bacillus amyloliquefaciens DSM 7]
 gi|328555433|gb|AEB25925.1| nitrate reductase (beta subunit) [Bacillus amyloliquefaciens TA208]
 gi|328913803|gb|AEB65399.1| nitrate reductase (beta subunit) [Bacillus amyloliquefaciens LL3]
          Length = 487

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWKTNKAE 239


>gi|294674586|ref|YP_003575202.1| ferredoxin [Prevotella ruminicola 23]
 gi|294473796|gb|ADE83185.1| putative ferredoxin [Prevotella ruminicola 23]
          Length = 55

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++CI C    C   CPV+   EGE   +I+PD C +CG C   CP +AI
Sbjct: 1  MAYVIGDDCIAC--GTCQGECPVEAISEGE-KYSINPDLCTECGTCASVCPSEAI 52


>gi|294778024|ref|ZP_06743458.1| glycyl-radical enzyme activating family protein [Bacteroides
           vulgatus PC510]
 gi|294448082|gb|EFG16648.1| glycyl-radical enzyme activating family protein [Bacteroides
           vulgatus PC510]
          Length = 302

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    C++ CP          +     +C+ CG C  ECP  AI+         +L
Sbjct: 52  KCLGC--GTCLKACPNGALTLAPEGIITDKQKCVLCGRCAEECPAMAIEISGTEYTAEYL 109


>gi|256078649|ref|XP_002575607.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238660849|emb|CAZ31840.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Schistosoma
           mansoni]
          Length = 169

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 104 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161


>gi|254519533|ref|ZP_05131589.1| anaerobic sulfite reductase subunit C [Clostridium sp. 7_2_43FAA]
 gi|226913282|gb|EEH98483.1| anaerobic sulfite reductase subunit C [Clostridium sp. 7_2_43FAA]
          Length = 320

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    CV  C        +           +CI CG C   CP  A
Sbjct: 170 DKCISC--GACVRACKKKSTAALHPENYRPVRDHSKCIGCGECVINCPTGA 218


>gi|223983022|ref|ZP_03633230.1| hypothetical protein HOLDEFILI_00509 [Holdemania filiformis DSM
          12042]
 gi|223965019|gb|EEF69323.1| hypothetical protein HOLDEFILI_00509 [Holdemania filiformis DSM
          12042]
          Length = 264

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V    CI C    CV+ CP       E    +  ++C+ CG CE  CP  A+        
Sbjct: 15 VEKNKCIGCSL--CVKTCPAHNLKIQEGKAQVILEDCLFCGQCEAVCPRKAVTVSGYDHA 72

Query: 64 ELWLKINSE 72
              + N E
Sbjct: 73 PQ--EKNKE 79


>gi|242280644|ref|YP_002992773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123538|gb|ACS81234.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 263

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C LC    C  VCP      G   +   PD+CI C  C   C  +A K +    L
Sbjct: 187 VSNDACQLC--GSCERVCPTAAISVGS-LVETDPDKCIFCCACVKVCAFEARKLEVPRLL 243

Query: 64  E--LWLKIN 70
           E   WL  N
Sbjct: 244 EVSQWLADN 252


>gi|219853289|ref|YP_002467721.1| methanogenesis marker 16 metalloprotein [Methanosphaerula palustris
           E1-9c]
 gi|219547548|gb|ACL17998.1| methanogenesis marker 16 metalloprotein [Methanosphaerula palustris
           E1-9c]
          Length = 414

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C+      +CP      G     I  D C++CG C   CP  A
Sbjct: 320 CVHCETCRAATLCPTGAISPG---AVIDRDRCVNCGTCVQVCPGPA 362


>gi|169832180|ref|YP_001718162.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Desulforudis audaxviator MP104C]
 gi|169639024|gb|ACA60530.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
          Desulforudis audaxviator MP104C]
          Length = 194

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE-- 60
          +  E C  C    CV  CP       +     +    C   G C   CP  AI  + +  
Sbjct: 12 IDEEKCTGC--GLCVPDCPEGALQIIDGKARLVSEPLCDGLGACLGACPEGAITVEEKDA 69

Query: 61 -PGLELWLKIN 70
           P  E  +  N
Sbjct: 70 VPYDEKKVMEN 80


>gi|153000588|ref|YP_001366269.1| electron transport complex protein RnfB [Shewanella baltica OS185]
 gi|160875224|ref|YP_001554540.1| electron transport complex protein RnfB [Shewanella baltica OS195]
 gi|217973445|ref|YP_002358196.1| electron transport complex protein RnfB [Shewanella baltica OS223]
 gi|304408662|ref|ZP_07390283.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS183]
 gi|307305491|ref|ZP_07585239.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica BA175]
 gi|151365206|gb|ABS08206.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS185]
 gi|160860746|gb|ABX49280.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS195]
 gi|217498580|gb|ACK46773.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS223]
 gi|304352483|gb|EFM16880.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS183]
 gi|306911794|gb|EFN42219.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica BA175]
 gi|315267417|gb|ADT94270.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS678]
          Length = 204

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDM 161


>gi|113971988|ref|YP_735781.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886672|gb|ABI40724.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 182

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           +C+ C +  C+  CP   +    + L + + D+C  CG+C   CP DA+  
Sbjct: 60  SCMHCGNPACLIACPAQAYTVRSDGLVVLNRDKCTGCGLCVSACPYDAVVM 110


>gi|126090183|ref|YP_001041664.1| electron transport complex protein RnfB [Shewanella baltica OS155]
 gi|126174476|ref|YP_001050625.1| electron transport complex protein RnfB [Shewanella baltica OS155]
 gi|125997681|gb|ABN61756.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS155]
 gi|125999839|gb|ABN63909.1| hypothetical protein Sbal_4546 [Shewanella baltica OS155]
          Length = 199

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDM 161


>gi|332289789|ref|YP_004420641.1| electron transport complex protein RnfB [Gallibacterium anatis
           UMN179]
 gi|330432685|gb|AEC17744.1| electron transport complex protein RnfB [Gallibacterium anatis
           UMN179]
          Length = 202

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD-T 59
            ++  E CI C  T C++ CPVD           + PD C  C +C   CP D I  +  
Sbjct: 112 AFIHEEMCIGC--TKCIQACPVDAIIGANKALHTVIPDLCTGCELCVAPCPTDCITMEKV 169

Query: 60  EPGLELW 66
           +P L+ W
Sbjct: 170 KPSLDSW 176


>gi|302391750|ref|YP_003827570.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203827|gb|ADL12505.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   C+ C+   C+EVCPVD  Y       + +  D C  C +C   CP   +  + E  
Sbjct: 49  IPMMCMHCEDAACMEVCPVDAIYRDVETGAVLVDHDRCFGCKLCVSACPFGNVTYNLETK 108

Query: 63  L 63
            
Sbjct: 109 Q 109


>gi|283768793|ref|ZP_06341704.1| 4Fe-4S binding domain protein [Bulleidia extructa W1219]
 gi|283104579|gb|EFC05952.1| 4Fe-4S binding domain protein [Bulleidia extructa W1219]
          Length = 288

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + TE CI CK   CV  CPV+   + +    +   P  CI C  C  +CPV A+  
Sbjct: 209 INTEKCIGCK--RCVAACPVNMFAYIDNTIQMVREPKHCILCAECYHQCPVKAVIH 262


>gi|262375913|ref|ZP_06069144.1| electron transport complex protein [Acinetobacter lwoffii SH145]
 gi|262309007|gb|EEY90139.1| electron transport complex protein [Acinetobacter lwoffii SH145]
          Length = 263

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 85  AVIREDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|254880766|ref|ZP_05253476.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           4_3_47FAA]
 gi|319639776|ref|ZP_07994506.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A]
 gi|254833559|gb|EET13868.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           4_3_47FAA]
 gi|317388593|gb|EFV69442.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A]
          Length = 302

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    C++ CP          +     +C+ CG C  ECP  AI+         +L
Sbjct: 52  KCLGC--GTCLKACPNGALTLAPEGIITDKQKCVLCGRCAEECPAMAIEISGTEYTAEYL 109


>gi|225026051|ref|ZP_03715243.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353]
 gi|224956626|gb|EEG37835.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353]
          Length = 304

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E C+ C H  C+E+CP        N + I+P  C  C  C  ECP  A++ + E  
Sbjct: 59  EKCVRCHH--CMEICPKKAITFFSNEIKINPYICNGCQKCIEECPARALQAEGEEK 112


>gi|223040869|ref|ZP_03611133.1| iron-sulfur protein [Campylobacter rectus RM3267]
 gi|222877831|gb|EEF12948.1| iron-sulfur protein [Campylobacter rectus RM3267]
          Length = 313

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           T  +   C+ C H  C ++CP     + E     I  + C     C   CP 
Sbjct: 108 TLHIPRRCMHCDHPPCQKICPFGVISKSEEGAVDIDKNFCFGGAKCRDACPW 159


>gi|222085585|ref|YP_002544115.1| NADH-ubiquinone oxidoreductase chain I protein [Agrobacterium
           radiobacter K84]
 gi|221723033|gb|ACM26189.1| NADH-ubiquinone oxidoreductase chain I protein [Agrobacterium
           radiobacter K84]
          Length = 165

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 62  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 119

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K   L +  + +  
Sbjct: 120 IV--EGPNFEFATETREEL------YFDKARLLENGDRWERE 153


>gi|213582103|ref|ZP_03363929.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 165

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 108


>gi|190358907|sp|A8F2T4|NUOI_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQAACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKERLLQNGDRWE 145


>gi|126460103|ref|YP_001056381.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249824|gb|ABO08915.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 264

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
            C  C    C  VCPVD     E   + I  D+CI CG C   CP 
Sbjct: 74  RCFHCYSAVCALVCPVDAHIVTEYGAVVIQTDKCIGCGRCAAVCPY 119


>gi|328953795|ref|YP_004371129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454119|gb|AEB09948.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 281

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C+ C+   C+  C  +       +    I P  C  CGVC   CP +AI+   
Sbjct: 215 VDPDRCVGCRE--CLRFCQFEAMTYSTADQKTVIDPRRCYGCGVCRSGCPEEAIQLVD 270


>gi|289191700|ref|YP_003457641.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938150|gb|ADC68905.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 654

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           YV    C  C    C EVCP++   E +                      I  + CI+CG
Sbjct: 240 YVDETKCTGC--GQCAEVCPIEVPNEFDMGLGMRKAIYKPFPQAVPSKYTIDKEHCIECG 297

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C   AI  + +P    
Sbjct: 298 LCAKVCGPKAIDFNQKPEFIE 318



 Score = 34.6 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V  E C  C    CV+ CP         +G     +    C  CG C   CP  A++ 
Sbjct: 577 ATVNEEICGGC--GVCVKQCPYGAPRLVEKDGRLVCEVIAALCKGCGTCAAGCPSGALEQ 634

Query: 58  DTEPGLELWLKI 69
           +    ++L+ +I
Sbjct: 635 NHFKTIQLYKQI 646


>gi|288932304|ref|YP_003436364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894552|gb|ADC66089.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 127

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           TE C+ C    C+ VCP   F  G ++ + ++  +CI CG C   CP+ A+
Sbjct: 75  TEKCVDC--GACISVCPTGVFERGEDDRIVVNEVKCIRCGFCVGVCPLKAL 123


>gi|258514628|ref|YP_003190850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfotomaculum acetoxidans DSM 771]
 gi|257778333|gb|ACV62227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
            [Desulfotomaculum acetoxidans DSM 771]
          Length = 1480

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
              V  + C  C    CV  CP       E +   I   +C  CG C  ECP  AI+    
Sbjct: 1402 AVVDEDKCAACL--TCVRTCPFGVPKINERHRAQIESVQCQGCGTCVGECPNKAIQLQHY 1459

Query: 61   PGLE-------LWLKIN 70
              ++       ++ +IN
Sbjct: 1460 KDIQLIGKVEGMFYEIN 1476


>gi|157826248|ref|YP_001493968.1| NADH dehydrogenase subunit I [Rickettsia akari str. Hartford]
 gi|226737411|sp|A8GPY5|NUOI_RICAH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157800206|gb|ABV75460.1| NADH dehydrogenase subunit I [Rickettsia akari str. Hartford]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 115 VEGP----------NFEFASLTHAALIYDKERLLQNGDRWE 145


>gi|187927967|ref|YP_001898454.1| ferredoxin [Ralstonia pickettii 12J]
 gi|187724857|gb|ACD26022.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           pickettii 12J]
          Length = 276

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E CI C  T C++ CPVD           +  D C  C +C P CPVD I  
Sbjct: 87  AVIDPERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDM 141


>gi|145589226|ref|YP_001155823.1| NADH dehydrogenase subunit I [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047632|gb|ABP34259.1| NADH dehydrogenase subunit I [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 163

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                  +   I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIGCKL--CEAVCPAYAITIETAERDDGTRRTSRYDIDLTKCIFCGFCEEACPVDAI 118


>gi|67459652|ref|YP_247276.1| NADH dehydrogenase subunit I [Rickettsia felis URRWXCal2]
 gi|75535952|sp|Q4UK24|NUOI_RICFE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|67005185|gb|AAY62111.1| NADH dehydrogenase I chain I [Rickettsia felis URRWXCal2]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKERLLQNGDRWE 145


>gi|11499084|ref|NP_070318.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA)
           [Archaeoglobus fulgidus DSM 4304]
 gi|6685558|sp|O28783|IORA_ARCFU RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|2649079|gb|AAB89760.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 623

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY VTE+C LC        CP          ++I    C+ C VC   CP  AI
Sbjct: 566 TYKVTEDCTLCMECVNTFACP--ALIFDGEKVSIDQSLCVGCAVCAKICPNRAI 617


>gi|325958670|ref|YP_004290136.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330102|gb|ADZ09164.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 259

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ C  C    C E+CP               D+C  C  C   CP  AI+ 
Sbjct: 184 FYTTDACNGC--ALCEEICPEMAIKLENGKPEWTKDKCSHCTACINRCPKRAIQY 236


>gi|317055293|ref|YP_004103760.1| Fe-S cluster domain-containing protein [Ruminococcus albus 7]
 gi|315447562|gb|ADU21126.1| Fe-S cluster domain protein [Ruminococcus albus 7]
          Length = 561

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 6  TENCILCKHTDCVEVCP------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + C+ C    CV  CP            G+    ++PD CI CG C   C   A     
Sbjct: 9  PDKCVGCN--SCVRSCPAPEANITKMLEGGKFVTTVNPDRCIGCGSCVKSCNHGARDYID 66

Query: 60 E 60
          +
Sbjct: 67 D 67


>gi|238650815|ref|YP_002916670.1| NADH dehydrogenase subunit I [Rickettsia peacockii str. Rustic]
 gi|259514787|sp|C4K221|NUOI_RICPU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|238624913|gb|ACR47619.1| NADH dehydrogenase subunit I [Rickettsia peacockii str. Rustic]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKERLLQNGDRWE 145


>gi|213580498|ref|ZP_03362324.1| respiratory nitrate reductase 1 beta chain [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 229

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP  
Sbjct: 183 CEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYK 229


>gi|254427723|ref|ZP_05041430.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Alcanivorax sp. DG881]
 gi|196193892|gb|EDX88851.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Alcanivorax sp. DG881]
          Length = 194

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 109 AYIREDECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVEPCPVDCIDM 163


>gi|160940739|ref|ZP_02088081.1| hypothetical protein CLOBOL_05633 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436259|gb|EDP14026.1| hypothetical protein CLOBOL_05633 [Clostridium bolteae ATCC
          BAA-613]
          Length = 677

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  C V      +    I PD+CI CG C   CP  A
Sbjct: 12 KCKHCYK--CVRYCGVKAIQVKDERAVIMPDKCILCGHCLKICPQSA 56


>gi|157829061|ref|YP_001495303.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933787|ref|YP_001650576.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. Iowa]
 gi|226737414|sp|B0BVB0|NUOI_RICRO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737415|sp|A8GTS0|NUOI_RICRS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157801542|gb|ABV76795.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908874|gb|ABY73170.1| NADH-quinone oxidoreductase chain I [Rickettsia rickettsii str.
           Iowa]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 57  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 115 VEGP----------NFEFASLTHTALIYDKERLLQNGDRWE 145


>gi|118443739|ref|YP_877665.1| ferredoxin [Clostridium novyi NT]
 gi|118134195|gb|ABK61239.1| polyferredoxin [Clostridium novyi NT]
          Length = 294

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C + CP +      N   I   +C++CG+C  +CP  AI+ 
Sbjct: 216 CIGC--GLCAKACPKEAITMENNLPVIDYSKCVNCGLCAMKCPTKAIQN 262


>gi|160879922|ref|YP_001558890.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           phytofermentans ISDg]
 gi|160428588|gb|ABX42151.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           phytofermentans ISDg]
          Length = 317

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             ++C  CK    VE CP+      ++ L++  D C +CG C  +C  D I
Sbjct: 170 DEDSCNSCKKCSVVESCPMSAATLEDDVLSLDKDACNNCGRCVGKCHFDCI 220


>gi|24374053|ref|NP_718096.1| electron transport complex protein RnfB [Shewanella oneidensis
           MR-1]
 gi|81744759|sp|Q8EE80|RNFB_SHEON RecName: Full=Electron transport complex protein rnfB
 gi|24348528|gb|AAN55540.1|AE015693_2 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 193

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM 161


>gi|134296514|ref|YP_001120249.1| ferredoxin [Burkholderia vietnamiensis G4]
 gi|134139671|gb|ABO55414.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           vietnamiensis G4]
          Length = 313

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C   CPVD I  
Sbjct: 103 AFIDESLCIGC--TLCLQACPVDAIIGAPKQMHTIIEPLCTGCDLCVAPCPVDCIAM 157


>gi|114047406|ref|YP_737956.1| electron transport complex protein RnfB [Shewanella sp. MR-7]
 gi|123030634|sp|Q0HVF6|RNFB_SHESR RecName: Full=Electron transport complex protein rnfB
 gi|113888848|gb|ABI42899.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. MR-7]
          Length = 193

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM 161


>gi|323197142|gb|EFZ82282.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
          Length = 136

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
          +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  
Sbjct: 4  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYR 51


>gi|321313277|ref|YP_004205564.1| nitrate reductase subunit beta [Bacillus subtilis BSn5]
 gi|320019551|gb|ADV94537.1| nitrate reductase (beta subunit) [Bacillus subtilis BSn5]
          Length = 487

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWQTNKAE 239


>gi|305662719|ref|YP_003859007.1| flavoprotein [Ignisphaera aggregans DSM 17230]
 gi|304377288|gb|ADM27127.1| flavoprotein [Ignisphaera aggregans DSM 17230]
          Length = 245

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 3   YVVTENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +V  + C    C      ++CPV+     E F  I   +CI C  C   CP  A+K 
Sbjct: 144 HVDRDVCKTYNCTKCLAKDICPVNAITIIEGFPRIDLSKCIGCEKCMYACPFKAVKC 200


>gi|291486314|dbj|BAI87389.1| nitrate reductase beta subunit [Bacillus subtilis subsp. natto
           BEST195]
          Length = 487

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWQTNKAE 239


>gi|317050575|ref|YP_004111691.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945659|gb|ADU65135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurispirillum indicum S5]
          Length = 260

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 9   CILCKHTDCVEVCPVD--CFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CPV+    Y+ +N + + +   CI CG+C+  CP      D +
Sbjct: 63  CNHCTDAPCVTACPVNPKAMYKKDNGITMHNEARCIGCGMCQSACPYTVASLDAD 117


>gi|282162803|ref|YP_003355188.1| putative ferredoxin [Methanocella paludicola SANAE]
 gi|282155117|dbj|BAI60205.1| putative ferredoxin [Methanocella paludicola SANAE]
          Length = 129

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
             ENC+ C    CV VCPV    +E +  + +    C+ CG C   CPV  I
Sbjct: 75  DEENCVHC--GACVAVCPVGAIAFEYDWRVRMDEKACVQCGNCVTACPVKVI 124


>gi|220932674|ref|YP_002509582.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
 gi|219993984|gb|ACL70587.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
          Length = 287

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  E C  C+   CV+ C  +      + L + P+ C  CG C+  CP  AIK +   
Sbjct: 60  PVVDNEKCTGCRK--CVDFCQYNALALMADTLLVFPEICHSCGGCKLICPAGAIKEEKRE 117

Query: 62  G---LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                E  +  N  +     N   ++           +  K        PG 
Sbjct: 118 VGKLREFKINDNLYFFQGELNTGEEQAVPVIEKLKSKINNKKTVIIDAPPGS 169


>gi|218888270|ref|YP_002437591.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218759224|gb|ACL10123.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 177

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C  VCP D   + +  + +    C  C +C   CP  AI
Sbjct: 64  CRQCADAPCARVCPTDALVQEDGVVVMRQQYCAACQLCVMACPYGAI 110


>gi|150398828|ref|YP_001322595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150011531|gb|ABR53983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 397

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT+ C+ C    CV  CPV           +    CI C +C   CP +AI 
Sbjct: 130 VVTDTCVGC--GICVPECPVASISLENEKAVVDKKSCIYCSICAQTCPWNAIF 180


>gi|47076738|dbj|BAD18283.1| nitrate reductase beta subunit [Geobacillus stearothermophilus]
          Length = 489

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCLNPSCVSSCPSGAMYKRDEDGIVLVDQNACRAWRYCVTSCPYKKVYFNWQTNKAE 239


>gi|1001849|emb|CAA59372.1| nitrate reductase beta subunit [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|1009367|emb|CAA62927.1| Respiratory nitrate reductase [Bacillus subtilis subsp. subtilis
           str. JH642]
          Length = 487

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWQTNKAE 239


>gi|16080780|ref|NP_391608.1| nitrate reductase beta subunit [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311690|ref|ZP_03593537.1| nitrate reductase (beta subunit) [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221316016|ref|ZP_03597821.1| nitrate reductase (beta subunit) [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320927|ref|ZP_03602221.1| nitrate reductase (beta subunit) [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221325212|ref|ZP_03606506.1| nitrate reductase (beta subunit) [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|1171652|sp|P42176|NARH_BACSU RecName: Full=Nitrate reductase beta chain
 gi|971342|emb|CAA90046.1| nitrate reductase beta subunit [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|2636264|emb|CAB15755.1| nitrate reductase (beta subunit) [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 487

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWQTNKAE 239


>gi|323703766|ref|ZP_08115405.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531290|gb|EGB21190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 368

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  E C  C+   C + CP      G +    I  + C+ CG C   CP  AI+ + +  
Sbjct: 190 IDLEKCTGCRK--CHQWCPAGAISMGEDKKSFIAAELCMGCGECTVSCPFGAIEVNWKTE 247

Query: 63  LELWLKINSEY 73
            ++  +  +EY
Sbjct: 248 PDVIQEKIAEY 258


>gi|297530014|ref|YP_003671289.1| nitrate reductase subunit beta [Geobacillus sp. C56-T3]
 gi|297253266|gb|ADI26712.1| nitrate reductase, beta subunit [Geobacillus sp. C56-T3]
          Length = 489

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCLNPSCVSSCPSGAMYKRDEDGIVLVDQNACRAWRYCVTSCPYKKVYFNWQTNKAE 239


>gi|288925659|ref|ZP_06419591.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|315606445|ref|ZP_07881460.1| ferredoxin [Prevotella buccae ATCC 33574]
 gi|288337597|gb|EFC75951.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|315251851|gb|EFU31825.1| ferredoxin [Prevotella buccae ATCC 33574]
          Length = 55

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV    EG+   +I+PD C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIAC--GTCIDECPVGAISEGD-IYSINPDACTECGTCADVCPNEAI 52


>gi|261420026|ref|YP_003253708.1| nitrate reductase subunit beta [Geobacillus sp. Y412MC61]
 gi|319766840|ref|YP_004132341.1| nitrate reductase subunit beta [Geobacillus sp. Y412MC52]
 gi|261376483|gb|ACX79226.1| nitrate reductase, beta subunit [Geobacillus sp. Y412MC61]
 gi|317111706|gb|ADU94198.1| nitrate reductase, beta subunit [Geobacillus sp. Y412MC52]
          Length = 489

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCLNPSCVSSCPSGAMYKRDEDGIVLVDQNACRAWRYCVTSCPYKKVYFNWQTNKAE 239


>gi|166032525|ref|ZP_02235354.1| hypothetical protein DORFOR_02240 [Dorea formicigenerans ATCC
           27755]
 gi|166026882|gb|EDR45639.1| hypothetical protein DORFOR_02240 [Dorea formicigenerans ATCC
           27755]
          Length = 607

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V  ++CI CK   C+    CP       +  + I    C  C +C   CPV AI    +
Sbjct: 550 HVDQDSCIGCKK--CIRDLGCP--AIVMNDGKICIDASMCTGCHLCSQVCPVCAIAGGDD 605

Query: 61  PG 62
             
Sbjct: 606 YE 607


>gi|154175410|ref|YP_001409194.1| peptidase T [Campylobacter curvus 525.92]
 gi|112803503|gb|EAU00847.1| peptidase T [Campylobacter curvus 525.92]
          Length = 190

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           Y  + +C  C++  CVE CP    +  E+        +C+ C  C   CP 
Sbjct: 52  YHYSTSCNHCENPKCVEGCPTRAMHISEDLSVQHDASKCVGCKYCIWNCPY 102


>gi|83589573|ref|YP_429582.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83572487|gb|ABC19039.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 159

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPV 52
          C  C    C+ VCP            + I  D CI C +C   CP 
Sbjct: 53 CQHCDEPACMAVCPAGAISRDVKTNAVIIDEDRCIGCRMCIMACPF 98


>gi|238785613|ref|ZP_04629592.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC
           43970]
 gi|238713500|gb|EEQ05533.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC
           43970]
          Length = 207

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIEM 164


>gi|152978385|ref|YP_001344014.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Actinobacillus succinogenes 130Z]
 gi|150840108|gb|ABR74079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Actinobacillus succinogenes 130Z]
          Length = 226

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           ++C  C +  CV VCP    Y       + ++ D C+ C  C   CP  
Sbjct: 94  QSCQHCTNAPCVAVCPTGASYIDPTTGIVDVNRDLCVGCQYCVAVCPYR 142


>gi|302671276|ref|YP_003831236.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Butyrivibrio proteoclasticus B316]
 gi|302395749|gb|ADL34654.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Butyrivibrio proteoclasticus B316]
          Length = 278

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + CI C    C +VCP       E     +   C  C  C   CP  AI+  T    + 
Sbjct: 187 DRCIGCS--TCEKVCPNQNITMSEKRPVWNHH-CHGCNACVVYCPTKAIQFKTPKAYQE 242


>gi|291542068|emb|CBL15178.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus bromii L2-63]
          Length = 56

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y ++++CI+C    C + CP D   EG+    I+ D C+DCG C   CPV A
Sbjct: 1  MAYTISDDCIMC--GACADNCPCDAISEGDGKYEINADACVDCGSCAEVCPVGA 52


>gi|284049133|ref|YP_003399472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
 gi|283953354|gb|ADB48157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
          Length = 250

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C   +CV +CPV+  + GE +  +  D C+ C  C   CP  AI
Sbjct: 177 VDPDRCKKC--GECVRLCPVENIHLGEKYAVM-GDHCLHCLACLHGCPHQAI 225


>gi|255526975|ref|ZP_05393868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296185139|ref|ZP_06853549.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509334|gb|EET85681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296049973|gb|EFG89397.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 369

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           NC  CK   C++ C        EN   +I   +CI CG C   C  +A +       +  
Sbjct: 195 NCKACK--QCIKSCSQKAINLNENKAASIDYSKCIGCGQCVAVCQFNAAQVVWNESADTA 252

Query: 67  LKINSEYA 74
            +  +EYA
Sbjct: 253 NEKIAEYA 260


>gi|237810768|ref|YP_002895219.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|251767337|ref|ZP_02266850.2| ferredoxin [Burkholderia mallei PRL-20]
 gi|237505466|gb|ACQ97784.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|243063120|gb|EES45306.1| ferredoxin [Burkholderia mallei PRL-20]
          Length = 125

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
           M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 38  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 95

Query: 55  IKPDTEPGLELWLKINSEY 73
           I  D     E   ++ ++Y
Sbjct: 96  IPQD-PGRPETKDQLMAKY 113


>gi|257064870|ref|YP_003144542.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792523|gb|ACV23193.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 296

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C    CV+VCP    ++ E    ++ + D+CI C  C   CP D  + 
Sbjct: 79  ACMHCTDAGCVQVCPSGALFKDEETGLVSYNKDKCIGCKYCAAACPFDVPRH 130


>gi|256820253|ref|YP_003141532.1| iron-sulfur binding oxidoreductase [Capnocytophaga ochracea DSM
           7271]
 gi|256581836|gb|ACU92971.1| iron-sulfur binding oxidoreductase [Capnocytophaga ochracea DSM
           7271]
          Length = 962

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 791 CQHCNNAPCETVCPVIATAHGQQGQNQMAYNRCVGTRYCANNCPYKVRRFNW 842


>gi|255659464|ref|ZP_05404873.1| ferredoxin-type protein [Mitsuokella multacida DSM 20544]
 gi|260848013|gb|EEX68020.1| ferredoxin-type protein [Mitsuokella multacida DSM 20544]
          Length = 494

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  + CI C    C   CP  C         I    C+DC  C   CP DA+      
Sbjct: 214 PVIDADRCIHC--GACERTCPSACIDAKTG--VIDSSRCVDCFDCLTLCPKDALHFSRSH 269

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSA 90
             +  +++           T   ++ PS 
Sbjct: 270 HAQQKVRM---------TETEPADTPPSG 289



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 17  CVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  +CPV                I  D CI CG CE  CP   I
Sbjct: 193 CHTICPVGTLLGTVSRFSVFRPVIDADRCIHCGACERTCPSACI 236


>gi|206602055|gb|EDZ38537.1| NADH dehydrogenase (quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 617

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+C  C    C  VCP     +E      I    CI C  C   C   AI
Sbjct: 566 VIEEDCTTC--GLCEPVCPSGSVTWEKGEVAHIDLTTCIRCKACVDACKFRAI 616


>gi|157954625|gb|AAB94931.2| formate hydrogenlyase subunit B [Thermococcus litoralis DSM 5473]
          Length = 165

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          NC  C++  C+ VCP    Y  E+    I   +CI C  C   CP    +   E
Sbjct: 46 NCRHCENAPCMLVCPARALYRDEDGAVRIKYQQCIGCMFCSVACPFGTPEFVPE 99


>gi|304314560|ref|YP_003849707.1| energy-converting hydrogenase A, subunit P [Methanothermobacter
           marburgensis str. Marburg]
 gi|5734542|emb|CAB52771.1| polyferredoxin [Methanothermobacter thermautotrophicus]
 gi|302588019|gb|ADL58394.1| energy-converting hydrogenase A, subunit P [Methanothermobacter
           marburgensis str. Marburg]
          Length = 340

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           YV+ +  CI C+   C++ CPVD   E +  + I    CI CG C  +CP
Sbjct: 125 YVIDDYLCIRCRK--CMKACPVDAIVEEDGRVEIDQSRCIACGDCLEKCP 172



 Score = 40.7 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 24/74 (32%), Gaps = 18/74 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGV 45
             +V   CI C    C EVCP D                     E    I    CI C  
Sbjct: 80  PVIVRGACIRC--GFCAEVCPTDPKTIECGENHLIREEFTIVPSEKLYVIDDYLCIRCRK 137

Query: 46  CEPECPVDAIKPDT 59
           C   CPVDAI  + 
Sbjct: 138 CMKACPVDAIVEED 151



 Score = 35.7 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 6   TENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPV 52
            E C+ C+   CV+ CP     Y  +  +   P++C+ C  C   CP 
Sbjct: 262 PEKCVQCRL--CVDECPSGAITYSEDEGVVRDPEKCLRCSTCYQTCPF 307


>gi|150018466|ref|YP_001310720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904931|gb|ABR35764.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 252

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + V + C  CK   C +VCPV+        +      C  C  C   CP +AI+   E  
Sbjct: 178 FYVEDTCNSCK--VCEKVCPVNNINVDTKPVY--KGNCEQCLACINHCPQNAIRLKQEKS 233

Query: 63  LELWLKINSEY 73
              ++  N + 
Sbjct: 234 RARFINQNVKL 244


>gi|320353468|ref|YP_004194807.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfobulbus propionicus DSM 2032]
 gi|320121970|gb|ADW17516.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfobulbus propionicus DSM 2032]
          Length = 1126

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 9/70 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +  + C  C    C  VC            G     I    C  CG C   CP  A   D
Sbjct: 1047 IDDQLCRGC--GRCANVCLYHAVTLQANTVGGWHAHIDEALCKGCGNCLSVCPTGA--AD 1102

Query: 59   TEPGLELWLK 68
            +      +L+
Sbjct: 1103 SPYRNRAFLE 1112



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD 24
           T++ T+ C LC    CV  CPV+
Sbjct: 104 TFIDTDRCTLC--GKCVAACPVN 124


>gi|312878405|ref|ZP_07738309.1| methyl-accepting chemotaxis sensory transducer
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794816|gb|EFR11241.1| methyl-accepting chemotaxis sensory transducer
          [Caldicellulosiruptor lactoaceticus 6A]
          Length = 623

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP-D 58
          M ++    C+ C    C  VCPV        +F+  + D CI CG C   C  +A    D
Sbjct: 1  MIFIDKTLCVSCFK--CFRVCPVPFANKIQHDFIVTNDDFCIHCGRCVQNCEHNARYFTD 58

Query: 59 TEPGLELWLKINSEY 73
              L   L   +E 
Sbjct: 59 DIDSLINLLNSKAEL 73


>gi|288559267|ref|YP_003422753.1| flavodoxin domain containing protein [Methanobrevibacter
           ruminantium M1]
 gi|288541977|gb|ADC45861.1| flavodoxin domain containing protein [Methanobrevibacter
           ruminantium M1]
          Length = 249

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +NCI C    C   CP +              +C  C  C   CP  AI  
Sbjct: 184 DNCIGC--GICRNNCPTNTIKIENKRPVWKRKKCDMCFACLHRCPQFAIHY 232


>gi|224437351|ref|ZP_03658323.1| NADH dehydrogenase subunit I [Helicobacter cinaedi CCUG 18818]
 gi|313143814|ref|ZP_07806007.1| NADH-quinone oxidoreductase subunit I [Helicobacter cinaedi CCUG
           18818]
 gi|313128845|gb|EFR46462.1| NADH-quinone oxidoreductase subunit I [Helicobacter cinaedi CCUG
           18818]
          Length = 234

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG+C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICTSNCIRIITDRGEDGRKKILDYSINFGRCIYCGLCAEVCPELAI 137

Query: 56  KP 57
             
Sbjct: 138 IH 139


>gi|121533899|ref|ZP_01665725.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans
           Nor1]
 gi|121307410|gb|EAX48326.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans
           Nor1]
          Length = 306

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V   NC  C    C  +C       G       P +C  CGVC   CP  AI    + 
Sbjct: 61  PHVDHTNCNGC--GICTRLCRFGAITSGTLTS---PLDCEGCGVCAFNCPQHAIAMREKE 115

Query: 62  GLELWLK 68
               ++ 
Sbjct: 116 AGHWFIA 122


>gi|331268947|ref|YP_004395439.1| polyferredoxin [Clostridium botulinum BKT015925]
 gi|329125497|gb|AEB75442.1| polyferredoxin [Clostridium botulinum BKT015925]
          Length = 288

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    CV+ CP +      N   I   +C++CG+C  +CP  AI+ 
Sbjct: 216 CIGC--GLCVKACPKEAIKLENNLPVIDYSKCVNCGLCAMKCPTKAIQN 262


>gi|330829394|ref|YP_004392346.1| formate-dependent nitrite reductase, 4Fe4S subunit [Aeromonas
           veronii B565]
 gi|328804530|gb|AEB49729.1| Formate-dependent nitrite reductase, 4Fe4S subunit [Aeromonas
           veronii B565]
          Length = 226

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    +  + +  + ++ D C+ C  C   CP  
Sbjct: 96  SCQHCDNAPCVHVCPTGASHIRKKDGIVDVNADLCVGCMYCLAACPYQ 143


>gi|300853895|ref|YP_003778879.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
 gi|300434010|gb|ADK13777.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
          Length = 462

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
          M  +  E C  C+   C +VCPVD     +     I+ ++C+ CG C   C       D 
Sbjct: 7  MINIDEELCTGCR--RCADVCPVDAIEGEQGKPQKINTEKCVMCGQCIQVCKGYQSVYDD 64

Query: 60 EPGL 63
           P  
Sbjct: 65 VPTP 68


>gi|269839557|ref|YP_003324249.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791287|gb|ACZ43427.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 205

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 9   CILCKHT--DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C +VCPV         +     P  CI C  C   CP    K D E  L 
Sbjct: 54  CMHCEDPVAPCAQVCPVMAILITPEGVVQMADPSRCIACRNCVYACPFGVPKMDLESRLM 113

Query: 65  L 65
            
Sbjct: 114 K 114


>gi|261366166|ref|ZP_05979049.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Subdoligranulum variabile DSM 15176]
 gi|282571979|gb|EFB77514.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Subdoligranulum variabile DSM 15176]
          Length = 856

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           +    C  CK       CP+         L I P+ C  CG C+ +CP 
Sbjct: 712 IDPAKCRGCKVCQVEANCPIHVAKLENGVLHIDPEACNHCGRCKGKCPF 760


>gi|154687841|ref|YP_001423002.1| NarH [Bacillus amyloliquefaciens FZB42]
 gi|154353692|gb|ABS75771.1| NarH [Bacillus amyloliquefaciens FZB42]
          Length = 479

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 173 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWQTNKAE 231


>gi|148827168|ref|YP_001291921.1| formate dehydrogenase accessory protein [Haemophilus influenzae
           PittGG]
 gi|148718410|gb|ABQ99537.1| formate dehydrogenase accessory protein [Haemophilus influenzae
           PittGG]
          Length = 548

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP      +  N +     D+CI CG C   CP +  + + E  
Sbjct: 103 KDGCMHCTEPGCLKACPAPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPEDN 161



 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ CI C +  C+  CP +               L +          C   CP  AI+  
Sbjct: 136 SDKCIGCGY--CIAGCPFNIPRMNPEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIRFG 193

Query: 59  TEPGLELWLK 68
           ++  ++++ +
Sbjct: 194 SKEEMKIYAE 203


>gi|113867422|ref|YP_725911.1| benzoyl-CoA oxygenase component A [Ralstonia eutropha H16]
 gi|113526198|emb|CAJ92543.1| Benzoyl-CoA oxygenase component A [Ralstonia eutropha H16]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C + CP+D     +    +  D C  C  C   CP  AI  
Sbjct: 12 IDPEICIRCN--TCEDTCPIDAITHDDRNYVVRADVCNGCNACLSPCPTGAIDN 63


>gi|108762977|ref|YP_633696.1| putative iron-sulfur binding oxidoreductase [Myxococcus xanthus DK
           1622]
 gi|108466857|gb|ABF92042.1| putative iron-sulfur binding oxidoreductase [Myxococcus xanthus DK
           1622]
          Length = 992

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCPV    +  E       + C+    C   CP    + +       
Sbjct: 824 CQHCENAPCETVCPVLATVHSSEGLNQQVYNRCVGTRYCANNCPTKVRRFNWFDYEHA 881


>gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 595

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C  T C   CP +    +      I  D+CI CG C  +C   AI
Sbjct: 542 IDADMCKGC--TLCARTCPNNAIEGKVREPHVIIQDKCIKCGACMEKCKFGAI 592


>gi|125975026|ref|YP_001038936.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum ATCC 27405]
 gi|256005088|ref|ZP_05430058.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 2360]
 gi|281418557|ref|ZP_06249576.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum JW20]
 gi|125715251|gb|ABN53743.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum ATCC 27405]
 gi|255990939|gb|EEU01051.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 2360]
 gi|281407641|gb|EFB37900.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum JW20]
 gi|316939187|gb|ADU73221.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 1313]
          Length = 290

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           M   V + CI C    C  VCP  V    + E  L  +  +CI CG C   CP  A
Sbjct: 158 MPSWVKDKCIYC--GLCQAVCPAKVIEVKKQEKELTFNEKDCIYCGKCVKVCPTSA 211


>gi|325264016|ref|ZP_08130749.1| iron-sulfur cluster-binding protein [Clostridium sp. D5]
 gi|324031054|gb|EGB92336.1| iron-sulfur cluster-binding protein [Clostridium sp. D5]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+   +  CV+ CP D  +  E    +  ++C  CG C   CP   I
Sbjct: 144 CMG--YGTCVKACPFDAIHIVEGIAVVDKEKCKACGKCIAACPKHLI 188


>gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
 gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
          Length = 584

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +  + C  C  T C   CP             I   +CI CG C   C  +A+  +
Sbjct: 531 IDPDVCKGC--TLCARKCPAQAIEGETKKAHKIDQQKCIKCGNCMTVCKSNAVMVE 584


>gi|210630476|ref|ZP_03296479.1| hypothetical protein COLSTE_00364 [Collinsella stercoris DSM 13279]
 gi|210160478|gb|EEA91449.1| hypothetical protein COLSTE_00364 [Collinsella stercoris DSM 13279]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C +C   DCV  CPV            + P  CI CG+C   C   A+K     G +
Sbjct: 320 DKCTMC--GDCVAACPVFACDLTANGKFTVEPTYCIGCGLCTEVCGDRALKMVERDGAD 376


>gi|160883808|ref|ZP_02064811.1| hypothetical protein BACOVA_01780 [Bacteroides ovatus ATCC 8483]
 gi|156110893|gb|EDO12638.1| hypothetical protein BACOVA_01780 [Bacteroides ovatus ATCC 8483]
          Length = 294

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI CK   C + CPV               +C  C  C   CP  A++ 
Sbjct: 229 FYTTDACIGCK--RCEKSCPVGNIMMMGRKPV-WGMDCTSCLACYHVCPQHAVQY 280


>gi|118444096|ref|YP_877287.1| electron transfer flavoprotein, alpha subunit [Clostridium novyi
          NT]
 gi|118134552|gb|ABK61596.1| electron transfer flavoprotein, alpha subunit [Clostridium novyi
          NT]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ + C+ CK   C   CP            I  D C  CG C   C  +AI
Sbjct: 6  ILKDKCVGCK--ICANTCPFGAIEIENKKA-IIKDNCTLCGSCINVCKFNAI 54


>gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C  C    C  +CPV     + +    I+ ++CI CG C   C   AI
Sbjct: 572 SELCKGCSK--CSRICPVGAIDGKIKEPYIINQEKCIKCGACIESCAFAAI 620


>gi|20094675|ref|NP_614522.1| MinD family protein [Methanopyrus kandleri AV19]
 gi|19887839|gb|AAM02452.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Methanopyrus kandleri AV19]
          Length = 259

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 12/83 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T++C+ C    C EVCP D            P  C  CG+C   CP DAI+ + E   
Sbjct: 64  VKTDDCVEC--GRCSEVCPWDA--------VEDPTACDGCGICAIACPEDAIEFEPEVLG 113

Query: 64  ELWLKINSEYATQWPNITTKKES 86
           E+    N +       I  + E 
Sbjct: 114 EIVRSRNPDL--NLEVIHPRSEP 134


>gi|293374451|ref|ZP_06620774.1| sulfite reductase, subunit C [Turicibacter sanguinis PC909]
 gi|292646937|gb|EFF64924.1| sulfite reductase, subunit C [Turicibacter sanguinis PC909]
          Length = 321

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           M     + CI C    CV  C              +     +CI CG C  +CP  A
Sbjct: 164 MPQYDKDRCISC--GACVRACKKKATGALSAENFKVLRDRSKCIGCGECVIQCPTAA 218


>gi|262168762|ref|ZP_06036457.1| sensor kinase CitA [Vibrio cholerae RC27]
 gi|262022880|gb|EEY41586.1| sensor kinase CitA [Vibrio cholerae RC27]
          Length = 138

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 17/20 (85%)

Query: 1  MTYVVTENCILCKHTDCVEV 20
          M +VVT+NCI CK+TDCV V
Sbjct: 1  MAFVVTDNCIQCKYTDCVAV 20


>gi|169633882|ref|YP_001707618.1| hypothetical protein ABSDF2362 [Acinetobacter baumannii SDF]
 gi|169152674|emb|CAP01675.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT----- 59
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I         
Sbjct: 89  EDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVEDTQAL 146

Query: 60  EPGLELWLKIN 70
               + + + N
Sbjct: 147 PSEQQRFAEQN 157


>gi|150008159|ref|YP_001302902.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503]
 gi|255015113|ref|ZP_05287239.1| putative nitroreductase [Bacteroides sp. 2_1_7]
 gi|149936583|gb|ABR43280.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIK 56
          MT  +  E+CI C    CV VCP D F +      I       CI CG C   CP  ++ 
Sbjct: 1  MTLNIDQESCIKC--GKCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVS 58

Query: 57 PDTEPGLE 64
              P  +
Sbjct: 59 HSEFPPEK 66


>gi|323187098|gb|EFZ72414.1| 4Fe-4S binding domain protein [Escherichia coli RN587/1]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 62  DTCRQCKEPQCMNVCPIGAITWQQREGCITVDHKRCIGCSACTTACPWMMATVNTE 117


>gi|299149170|ref|ZP_07042231.1| ferredoxin [Bacteroides sp. 3_1_23]
 gi|298512837|gb|EFI36725.1| ferredoxin [Bacteroides sp. 3_1_23]
          Length = 294

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI CK   C + CPV               +C  C  C   CP  A++ 
Sbjct: 229 FYTTDACIGCK--RCEKSCPVGNIMMMGRKPV-WGMDCTSCLACYHVCPQHAVQY 280


>gi|296331368|ref|ZP_06873840.1| nitrate reductase (beta subunit) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676355|ref|YP_003868027.1| respiratory nitrate reductase, subunit beta [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151483|gb|EFG92360.1| nitrate reductase (beta subunit) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414599|gb|ADM39718.1| respiratory nitrate reductase, beta subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWQTNKAE 239


>gi|254362434|ref|ZP_04978543.1| formate-dependent nitrite reductase [Fe-S] protein NrfC [Mannheimia
           haemolytica PHL213]
 gi|110735267|gb|ABG89204.1| nitrite reductase Fe-S protein [Mannheimia haemolytica]
 gi|153094023|gb|EDN74939.1| formate-dependent nitrite reductase [Fe-S] protein NrfC [Mannheimia
           haemolytica PHL213]
          Length = 225

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       I      C+ C  C   CP        E
Sbjct: 93  QSCQHCTNAPCVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPE 148


>gi|84490257|ref|YP_448489.1| HdrA1 [Methanosphaera stadtmanae DSM 3091]
 gi|84373576|gb|ABC57846.1| HdrA1 [Methanosphaera stadtmanae DSM 3091]
          Length = 649

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  +NC  C+   CVE+CP       +    ++   C  CG C   CP  A+        
Sbjct: 581 VSKDNCGGCE--ICVELCPFKALSIVDGKCEVNIALCKGCGTCVGACPTGALDQAHFRDE 638

Query: 64  ELWLKINSEY 73
           ++  +I + +
Sbjct: 639 QILAQIEAAF 648



 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 20/77 (25%)

Query: 3   YVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLA-----IHPDECIDCG 44
           +V    C  C    C EVCP             V   Y            I  D CI C 
Sbjct: 243 FVDEVTCTGC--GVCQEVCPIEMPNYFDEGTGMVKAAYIPFPQAVPLVATIDDDYCIGCK 300

Query: 45  VCEPECPVDAIKPDTEP 61
           +C+  C + AI  + EP
Sbjct: 301 LCDKACEIGAIDHEQEP 317


>gi|117920613|ref|YP_869805.1| electron transport complex protein RnfB [Shewanella sp. ANA-3]
 gi|166225087|sp|A0KX80|RNFB_SHESA RecName: Full=Electron transport complex protein rnfB
 gi|117612945|gb|ABK48399.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. ANA-3]
          Length = 193

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM 161


>gi|331644286|ref|ZP_08345415.1| putative electron transport protein YsaA [Escherichia coli H736]
 gi|331036580|gb|EGI08806.1| putative electron transport protein YsaA [Escherichia coli H736]
          Length = 159

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 106


>gi|303236983|ref|ZP_07323558.1| ferredoxin [Prevotella disiens FB035-09AN]
 gi|302482848|gb|EFL45868.1| ferredoxin [Prevotella disiens FB035-09AN]
          Length = 55

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++ +CI C    C++ CPV    EG+    I  D C +CG C   CP +AI
Sbjct: 1  MAYVISNDCIAC--GTCIDECPVGAISEGD-IYNIDADACTECGTCASVCPSEAI 52


>gi|300853896|ref|YP_003778880.1| putative Fe-S-cluster-containing hydrogenase components 2
           [Clostridium ljungdahlii DSM 13528]
 gi|300434011|gb|ADK13778.1| predicted Fe-S-cluster-containing hydrogenase components 2
           [Clostridium ljungdahlii DSM 13528]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C + CPV+       +++++ D C+ C +C   CP  AI
Sbjct: 60  CRQCEDAPCGKACPVNAISNENGYVSVNKDVCVGCKICMLACPFGAI 106


>gi|300712347|ref|YP_003738161.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halalkalicoccus jeotgali B3]
 gi|299126030|gb|ADJ16369.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halalkalicoccus jeotgali B3]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCP +   + +N    +  D CI C  C   CP  A
Sbjct: 92  CYHCENAPCVSVCPTNALQKKDNGFVEVVDDLCIGCQYCLSACPFGA 138


>gi|326201306|ref|ZP_08191178.1| putative PAS/PAC sensor protein [Clostridium papyrosolvens DSM
          2782]
 gi|325988874|gb|EGD49698.1| putative PAS/PAC sensor protein [Clostridium papyrosolvens DSM
          2782]
          Length = 574

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGLELW 66
          NC  C    C+  CPV+      +   I  DEC+ CG C   CP +A   +++   ++ +
Sbjct: 10 NCKNCYK--CIRSCPVNAIAFKNDQAEIIHDECMLCGNCLTVCPQNAKSVNSDVEKVKKF 67

Query: 67 LKINSE 72
          ++   +
Sbjct: 68 IQKREK 73


>gi|198274020|ref|ZP_03206552.1| hypothetical protein BACPLE_00157 [Bacteroides plebeius DSM 17135]
 gi|198273098|gb|EDY97367.1| hypothetical protein BACPLE_00157 [Bacteroides plebeius DSM 17135]
          Length = 268

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           T+ C  C   +C+EVCP    +  E+  +I     +CI C  C   CP +A +  T 
Sbjct: 195 TDGCFAC--GECIEVCPTHAIHFSEDQSSIETDIHKCIKCCACVKCCPNEAREFSTP 249


>gi|168700929|ref|ZP_02733206.1| formate dehydrogenase beta subunit [Gemmata obscuriglobus UQM 2246]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C    C + CP     Y     + I PD C  C  C   CP   I
Sbjct: 141 SDVCKHCAAAPCQQACPTGSIVYTEFANVYIQPDICNGCAYCVAACPFGVI 191


>gi|218778152|ref|YP_002429470.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759536|gb|ACL02002.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 434

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 7   ENCILCKHTDCVEVCPVDC---------FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C    C + CP++            + +    I+ + CI CGVC  +C   A +
Sbjct: 289 EKCTGC--GKCAKACPINAIEMVADGDPNTKRKKKPEINLELCIGCGVCGLDCKPSACQ 345


>gi|193061679|ref|ZP_03042776.1| 4Fe-4S binding domain protein [Escherichia coli E22]
 gi|193068566|ref|ZP_03049528.1| 4Fe-4S binding domain protein [Escherichia coli E110019]
 gi|194427429|ref|ZP_03059978.1| 4Fe-4S binding domain protein [Escherichia coli B171]
 gi|218556134|ref|YP_002389047.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli IAI1]
 gi|260846712|ref|YP_003224490.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O103:H2 str. 12009]
 gi|300902766|ref|ZP_07120721.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|301304628|ref|ZP_07210737.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|192932469|gb|EDV85066.1| 4Fe-4S binding domain protein [Escherichia coli E22]
 gi|192958217|gb|EDV88658.1| 4Fe-4S binding domain protein [Escherichia coli E110019]
 gi|194414469|gb|EDX30742.1| 4Fe-4S binding domain protein [Escherichia coli B171]
 gi|218362902|emb|CAR00537.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli IAI1]
 gi|257761859|dbj|BAI33356.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O103:H2 str. 12009]
 gi|300405194|gb|EFJ88732.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300840106|gb|EFK67866.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|315254104|gb|EFU34072.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|323160657|gb|EFZ46596.1| iron-sulfur protein [Escherichia coli E128010]
          Length = 157

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPV+        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVNAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|303243651|ref|ZP_07329992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485893|gb|EFL48816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 426

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP-VDAIKPDTEPG 62
           +  E C+ C    C  VCPVD          I  + CI C  C   CP +DAIK   E  
Sbjct: 123 IDEELCVNCS--SCKLVCPVDAIDYNGVSHVIDKNICIGCNRCIDACPVIDAIKTYDEKI 180

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAK 92
           L+  +  +     +       KE +    K
Sbjct: 181 LKEKIDKSQYLKFERLLTHENKECVKDNNK 210



 Score = 40.4 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 9   CILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C   +C+EVCP +    G         +    I  ++CI C +C   C VD     +
Sbjct: 281 CIKC--GECIEVCPTNAMRIGEIPRIPKIRDKCYIIDENKCIGCRICYKVCNVDNAISIS 338

Query: 60  EPGLELWLKINSEYA 74
                 +  IN EY 
Sbjct: 339 SETRLPY--INPEYC 351



 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++ E  CI C+   C +VC VD             I+P+ C+ CG+C  ECPVDAI
Sbjct: 312 YIIDENKCIGCR--ICYKVCNVDNAISISSETRLPYINPEYCVRCGLCYRECPVDAI 366



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +V   CI C   +CV+VCP     +  N +     ECI CG C   CP +A++    P +
Sbjct: 252 IVKSLCISC--GNCVDVCPGYIDLKNYNVV-----ECIKCGECIEVCPTNAMRIGEIPRI 304

Query: 64  EL 65
             
Sbjct: 305 PK 306


>gi|302038530|ref|YP_003798852.1| putative nitrate oxidoreductase subunit beta [Candidatus Nitrospira
           defluvii]
 gi|302038550|ref|YP_003798872.1| putative nitrate oxidoreductase subunit beta [Candidatus Nitrospira
           defluvii]
 gi|300606594|emb|CBK42927.1| putative Nitrate oxidoreductase, beta subunit [Candidatus
           Nitrospira defluvii]
 gi|300606614|emb|CBK42947.1| putative Nitrate oxidoreductase, beta subunit [Candidatus
           Nitrospira defluvii]
          Length = 429

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + I  + C     C  +CP      
Sbjct: 186 CNHCTYPGCLAACPRKAIYKRPEDGIVLIDQNRCRGYKKCVEQCPFKKPMY 236


>gi|153854059|ref|ZP_01995392.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814]
 gi|149753441|gb|EDM63372.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+ + C+ C    C   CPV    +G +   I  D C+DCG C  +CPV AI
Sbjct: 1  MAHVIGDECVSC--GSCEAECPVGAIAQGADHYEIDADACVDCGACAAQCPVGAI 53


>gi|50122691|ref|YP_051858.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613217|emb|CAG76668.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           atrosepticum SCRI1043]
          Length = 316

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 2   TYVV---TENCILCKHTDCVEVCPVD-----CFYEGENFLAIHPD-ECIDCGVCEPECPV 52
            Y +    + C+ C    C E CP           G  F  I    +C  C  CE  CP 
Sbjct: 50  AYQILFSPDKCLHC--GKCAEACPRGIHTLIADEYGSRFHHIDRTVQCTGCRKCEAACPS 107

Query: 53  DA--IKPDTEPGLELWLKINSEYATQ 76
           +A  I        EL   I  +Y+  
Sbjct: 108 NALDIVGKDMTVAELMAVIMQDYSFY 133


>gi|16131444|ref|NP_418030.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89110439|ref|AP_004219.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K-12 substr. W3110]
 gi|170018196|ref|YP_001723150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli ATCC 8739]
 gi|170083082|ref|YP_001732402.1| hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|194435589|ref|ZP_03067692.1| 4Fe-4S binding domain protein [Escherichia coli 101-1]
 gi|238902663|ref|YP_002928459.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli BW2952]
 gi|253771592|ref|YP_003034423.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038761|ref|ZP_04872817.1| hydrogenase [Escherichia sp. 1_1_43]
 gi|254163497|ref|YP_003046605.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli B str. REL606]
 gi|256025698|ref|ZP_05439563.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia sp. 4_1_40B]
 gi|300950332|ref|ZP_07164264.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300957613|ref|ZP_07169813.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301017831|ref|ZP_07182476.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301645991|ref|ZP_07245897.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307140265|ref|ZP_07499621.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli H736]
 gi|3025305|sp|P56256|YSAA_ECOLI RecName: Full=Putative electron transport protein ysaA
 gi|2367245|gb|AAC76597.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85676470|dbj|BAE77720.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K12 substr. W3110]
 gi|169753124|gb|ACA75823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|169890917|gb|ACB04624.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K-12 substr. DH10B]
 gi|194425132|gb|EDX41116.1| 4Fe-4S binding domain protein [Escherichia coli 101-1]
 gi|226839267|gb|EEH71290.1| hydrogenase [Escherichia sp. 1_1_43]
 gi|238862459|gb|ACR64457.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli BW2952]
 gi|242379091|emb|CAQ33893.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli BL21(DE3)]
 gi|253322636|gb|ACT27238.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975398|gb|ACT41069.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli B str. REL606]
 gi|253979554|gb|ACT45224.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli BL21(DE3)]
 gi|260447409|gb|ACX37831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|299882652|gb|EFI90863.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300315650|gb|EFJ65434.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300450331|gb|EFK13951.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301075743|gb|EFK90549.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|309703976|emb|CBJ03319.1| putative electron-transport protein [Escherichia coli ETEC H10407]
 gi|315138151|dbj|BAJ45310.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli DH1]
 gi|315618387|gb|EFU98974.1| iron-sulfur protein [Escherichia coli 3431]
 gi|323959390|gb|EGB55050.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971335|gb|EGB66577.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 157

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|327484144|gb|AEA78551.1| Iron-sulfur cluster-binding protein [Vibrio cholerae LMA3894-4]
          Length = 504

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 135 KGCE--RCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 192

Query: 63  LELWLK 68
            + +++
Sbjct: 193 TQKFIE 198



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV VCP    +       L     +C+ CG+C   CP  A+
Sbjct: 371 CTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 417


>gi|253682712|ref|ZP_04863509.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|253562424|gb|EES91876.1| ferredoxin [Clostridium botulinum D str. 1873]
          Length = 288

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C + CP +      N   I   +C++CG+C  +CP  AI+ 
Sbjct: 216 CIGC--GLCAKACPKEAITMENNLPVIDYSKCVNCGLCAMKCPTKAIQN 262



 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 18/79 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA----------------IHPDECIDCGVCE 47
           V  + C+ C    CV  CP                            I    CI CG+C 
Sbjct: 166 VNKDKCVAC--GACVSTCPKGVIDLVPQKQLVFVSCNSHDRGLDVKNICSTGCIGCGLCA 223

Query: 48  PECPVDAIKPDTEPGLELW 66
             CP +AI  +    +  +
Sbjct: 224 KACPKEAITMENNLPVIDY 242


>gi|210631904|ref|ZP_03297116.1| hypothetical protein COLSTE_01006 [Collinsella stercoris DSM 13279]
 gi|210159829|gb|EEA90800.1| hypothetical protein COLSTE_01006 [Collinsella stercoris DSM 13279]
          Length = 401

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 19/93 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPE 49
           V    C+ C    C  +C                          +I  + C+ CG C   
Sbjct: 199 VDASRCVGC--HACERICAHGAVGFAGTRERVLKNGQTVTTPVASIDHERCVGCGRCIGA 256

Query: 50  CPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
           C  DAI+ D +   ++   +N + A     I  
Sbjct: 257 CNQDAIEADYDAAADV---LNCKIAEYTKAIVQ 286


>gi|126667558|ref|ZP_01738528.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter sp. ELB17]
 gi|126627984|gb|EAZ98611.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter sp. ELB17]
          Length = 211

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
             +  + CI C  T C++ CPVD      ++   +   EC  C +C   CPVD I     
Sbjct: 109 AVIREDECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVEPCPVDCIDMIVI 166

Query: 60  EPGLELWL 67
           EP +  W+
Sbjct: 167 EPDIRSWI 174


>gi|126700933|ref|YP_001089830.1| hydrogenase [Clostridium difficile 630]
 gi|115252370|emb|CAJ70211.1| Iron hydrogenase [Clostridium difficile]
          Length = 461

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 1  MTYVV----TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
          MT+++     + C  C+   C +VCPV+     E     I+ D C+ CG C   C   A 
Sbjct: 1  MTFMIINIDKDLCTGCRE--CSKVCPVNAIEGEEGKPQEINLDRCVMCGQCVQTCKSYAS 58

Query: 56 KPDT 59
            D 
Sbjct: 59 VIDE 62


>gi|148266022|ref|YP_001232728.1| hypothetical protein Gura_4011 [Geobacter uraniireducens Rf4]
 gi|146399522|gb|ABQ28155.1| protein of unknown function DUF362 [Geobacter uraniireducens Rf4]
          Length = 375

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+ E C LC    C + CP       +  L      CI C  C   CP  A+    
Sbjct: 311 VMPEKCRLC--GICRDACPPHAIEIRDGKLHFDYHACIRCFCCRELCPDGALDVKD 364


>gi|89893739|ref|YP_517226.1| hypothetical protein DSY0993 [Desulfitobacterium hafniense Y51]
 gi|219668114|ref|YP_002458549.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|89333187|dbj|BAE82782.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538374|gb|ACL20113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +    CI C    C   CP+   Y+    ++I  DEC++CG+C             +   
Sbjct: 3  IDVNKCIGC--GLCAPYCPMGVLYKDGETMSIDHDECVECGICLNCAKCPKGAFYQDELS 60

Query: 64 ELWLKINSEYA 74
             + + +E++
Sbjct: 61 WPRI-LRAEFS 70


>gi|319404251|emb|CBI77844.1| NADH dehydrogenase I chain I [Bartonella rochalimae ATCC BAA-1498]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRCNDGTRRTIRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I    E     +     E          K++ L +  + +  
Sbjct: 118 I---VEGPNFEFATEMRE-----ELYYDKEKLLNNGDRWERE 151


>gi|303258421|ref|ZP_07344424.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|330999914|ref|ZP_08323613.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302858867|gb|EFL81955.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|329573432|gb|EGG55041.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 5   VTENCILCKHT-DCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V + C  C H   C   CP              +  + CI CG+C+  CP + +  D E
Sbjct: 119 VQDTCRQCDHPVPCANACPKGAIRVNPKTGARYVDEETCIGCGLCQKACPWNMMSFDVE 177



 Score = 40.4 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKP 57
           YV  E CI C    C + CP +                C     C   CP +AI+ 
Sbjct: 151 YVDEETCIGC--GLCQKACPWNMMSFDVEKNVASKCFLCNGDPKCVKACPTEAIRY 204


>gi|300691033|ref|YP_003752028.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           PSI07]
 gi|299078093|emb|CBJ50736.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           PSI07]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPALAITIESDLRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118


>gi|170726903|ref|YP_001760929.1| electron transport complex protein RnfB [Shewanella woodyi ATCC
           51908]
 gi|169812250|gb|ACA86834.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           woodyi ATCC 51908]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGTGKQMHTVITDYCTGCDLCVAPCPVDCIDM 161


>gi|148265397|ref|YP_001232103.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146398897|gb|ABQ27530.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Geobacter uraniireducens Rf4]
          Length = 258

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            E C+ C    C++VCP     Y  +  +   + ++CI C  C   CP +  +  T+  +
Sbjct: 73  NERCMHCGDAGCMKVCPSPGALYRTKEGIVAFNREKCISCKYCVSACPFNIPRYGTDDKV 132

Query: 64  EL 65
             
Sbjct: 133 SK 134


>gi|114045797|ref|YP_736347.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113887239|gb|ABI41290.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           +C+ C +  C+  CP   +    + L + + D+C  CG+C   CP DA+  
Sbjct: 60  SCMHCGNPACLIACPAQAYTVRSDGLVVLNRDKCTGCGLCVSACPYDAVVM 110


>gi|91978474|ref|YP_571133.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91684930|gb|ABE41232.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB5]
          Length = 607

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 9   CILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D IK  T P  
Sbjct: 549 CTAC--QSCMNLGCPALTWSDEWFEGRHRVKIDPASCIGCTLCAQVCTIDCIKIATPPVT 606

Query: 64  E 64
           +
Sbjct: 607 Q 607


>gi|325299039|ref|YP_004258956.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324318592|gb|ADY36483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 311

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +VVT+ CI C    C EVCP    YE  +       +C  C  C   CP  AIK   E  
Sbjct: 224 FVVTDACIGC--AVCTEVCPRG-NYELTSTGVKTKGDCDFCFACIQNCPQKAIKF-AELP 279

Query: 63  LELWLKINSE 72
              +L    +
Sbjct: 280 DSPFLAHGEK 289


>gi|319642948|ref|ZP_07997584.1| hypothetical protein HMPREF9011_03185 [Bacteroides sp. 3_1_40A]
 gi|317385496|gb|EFV66439.1| hypothetical protein HMPREF9011_03185 [Bacteroides sp. 3_1_40A]
          Length = 272

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  TE CI CK   C +VCPV      +    +    C  C  C   CPV A++ 
Sbjct: 203 PFHATEACIGCKK--CEKVCPVGNITVTDRP--VWGGNCTQCLACYHVCPVHAVEY 254


>gi|283457521|ref|YP_003362104.1| nitrate reductase subunit beta [Rothia mucilaginosa DY-18]
 gi|283133519|dbj|BAI64284.1| nitrate reductase beta subunit [Rothia mucilaginosa DY-18]
          Length = 537

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D C     C   CP   +  
Sbjct: 186 CEHCLNPSCMASCPSGAIYKRAEDGIVLVDQDRCRGWRQCITGCPYKKVYF 236


>gi|261369003|ref|ZP_05981886.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
 gi|282568874|gb|EFB74409.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            CI C    C   CP       +      P  CI C  C   CPV+A +PD +
Sbjct: 175 RCIDC--GRCAAACPTGAIDAADPRQT-DPARCIGCMRCVRLCPVEARRPDAD 224


>gi|255326825|ref|ZP_05367901.1| nitrate reductase, beta subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296042|gb|EET75383.1| nitrate reductase, beta subunit [Rothia mucilaginosa ATCC 25296]
          Length = 537

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +  D C     C   CP   +  
Sbjct: 186 CEHCLNPSCMASCPSGAIYKRAEDGIVLVDQDRCRGWRQCITGCPYKKVYF 236


>gi|288574135|ref|ZP_06392492.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569876|gb|EFC91433.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E CI C    C + C  D     +    I   +C  C  C   CPV AI        
Sbjct: 65  VDEETCIGC--GKCRDFCRFDAVAMVDGKARIRQGKCEGCAGCTMVCPVQAISM-VPRRQ 121

Query: 64  ELWLK 68
             W K
Sbjct: 122 GNWYK 126


>gi|160938185|ref|ZP_02085540.1| hypothetical protein CLOBOL_03078 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438558|gb|EDP16315.1| hypothetical protein CLOBOL_03078 [Clostridium bolteae ATCC
           BAA-613]
          Length = 181

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+ CP D      N   I   +CI CG+C  +CP   I
Sbjct: 126 CIAC--GICVKNCPADAVRIENNHAVIDEAKCIACGMCAVKCPRGII 170


>gi|114777067|ref|ZP_01452087.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans
           PV-1]
 gi|114552588|gb|EAU55048.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans
           PV-1]
          Length = 194

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP-DT 59
            +V  + CI C  T C++ CPVD      + +  +  D C  C +C   CPVD I     
Sbjct: 106 AFVREDECIGC--TLCIKACPVDAIIGAPKQYHTVLADHCTGCELCVEPCPVDCIDMLVK 163

Query: 60  EPGLELW 66
              +E W
Sbjct: 164 PELIEHW 170


>gi|222055166|ref|YP_002537528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221564455|gb|ACM20427.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 284

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +  E+C  C+   C+ +C      +        +    C  CG+C   C  +AI  D 
Sbjct: 218 IDPESCSGCR--QCMRLCQFGALGYSASNKKAVVDQTHCYGCGICRSACKTNAISLDD 273


>gi|330836087|ref|YP_004410728.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
 gi|329747990|gb|AEC01346.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
          Length = 297

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            CI C    CVE CP     E +  + I    C  CG+C  +CP  A+  D
Sbjct: 53  ACIQC--GICVETCPERAL-ELDGRIHIDKKHCTGCGMCIEKCPAAAMAFD 100


>gi|311070246|ref|YP_003975169.1| nitrate reductase subunit beta [Bacillus atrophaeus 1942]
 gi|310870763|gb|ADP34238.1| nitrate reductase (beta subunit) [Bacillus atrophaeus 1942]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPACVSSCPSGAMYKREEDGIVLVDQNACRSWRYCVSSCPYKKVYFNWQTNKAE 239


>gi|161523689|ref|YP_001578701.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia multivorans ATCC 17616]
 gi|189351547|ref|YP_001947175.1| putative ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|221199980|ref|ZP_03573023.1| ferredoxin [Burkholderia multivorans CGD2M]
 gi|221206865|ref|ZP_03579877.1| ferredoxin [Burkholderia multivorans CGD2]
 gi|160341118|gb|ABX14204.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia multivorans ATCC 17616]
 gi|189335569|dbj|BAG44639.1| putative ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|221173520|gb|EEE05955.1| ferredoxin [Burkholderia multivorans CGD2]
 gi|221180219|gb|EEE12623.1| ferredoxin [Burkholderia multivorans CGD2M]
          Length = 87

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ ++Y
Sbjct: 59 IPRD-PQHDESHAQLMAKY 76


>gi|83644719|ref|YP_433154.1| electron transport complex protein RnfB [Hahella chejuensis KCTC
           2396]
 gi|123767479|sp|Q2SKU5|RNFB_HAHCH RecName: Full=Electron transport complex protein rnfB
 gi|83632762|gb|ABC28729.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Hahella
           chejuensis KCTC 2396]
          Length = 197

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I     
Sbjct: 108 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCIDMIPA 165

Query: 61  P 61
           P
Sbjct: 166 P 166


>gi|15642824|ref|NP_227865.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|148270010|ref|YP_001244470.1| hypothetical protein Tpet_0875 [Thermotoga petrophila RKU-1]
 gi|170288694|ref|YP_001738932.1| hypothetical protein TRQ2_0897 [Thermotoga sp. RQ2]
 gi|4980533|gb|AAD35142.1|AE001691_16 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|147735554|gb|ABQ46894.1| protein of unknown function DUF362 [Thermotoga petrophila RKU-1]
 gi|170176197|gb|ACB09249.1| protein of unknown function DUF362 [Thermotoga sp. RQ2]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + T  C+ C+   C E CP            I   +CI C VC   CP DAI
Sbjct: 207 IDTRKCVKCRL--CEERCPASAIDISSQR--IDYQKCIRCYVCHEVCPQDAI 254


>gi|311900215|dbj|BAJ32623.1| putative iron-sulfur binding protein [Kitasatospora setae KM-6054]
          Length = 205

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9   CILCKHT--DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP +      + +     P  CI C  C   CP    K D E  L+
Sbjct: 53  CMHCEDPVAPCAEVCPAEAILITADGVVQEADPTRCIGCANCVNACPFGVPKIDLEAKLQ 112


>gi|257065401|ref|YP_003145073.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793054|gb|ACV23724.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 193

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +C  C++  CV  CPV   Y+      +    + CI C  C   CP  A + D
Sbjct: 57  SCNHCENPACVANCPVGAMYKDPETGLVLHDDNLCIKCETCMRSCPYGAPQHD 109


>gi|242280314|ref|YP_002992443.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           salexigens DSM 2638]
 gi|242123208|gb|ACS80904.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           salexigens DSM 2638]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E CI C+   C+  CP +     +  + I  ++C+ CG C   CP + I  
Sbjct: 85  PVIDHEGCIGCEE--CIRNCPDEAMEMVDGKVVITREKCLVCGYCTNVCPTEVISC 138


>gi|138894326|ref|YP_001124779.1| nitrate reductase subunit beta [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265839|gb|ABO66034.1| Nitrate reductase beta subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 510

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  D C     C   CP   +  + +     
Sbjct: 181 CEHCLNPPCVSSCPSGAIYKRDEDGIVLVDHDACRSWRFCVTGCPYKKVYFNWKTHKAE 239


>gi|126731463|ref|ZP_01747269.1| nitrate reductase beta chain [Sagittula stellata E-37]
 gi|126707999|gb|EBA07059.1| nitrate reductase beta chain [Sagittula stellata E-37]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C+  C  +  Y+   +  + I  + C     C   CP   +  + E
Sbjct: 133 CNHCANPACLAACSRNAIYKRQEDGIVLIDQERCRGYRYCVSACPYKKVYFNEE 186


>gi|104780426|ref|YP_606924.1| lectron transport complex protein RnfB [Pseudomonas entomophila
           L48]
 gi|95109413|emb|CAK14113.1| putative lectron transport complex protein RnfB [Pseudomonas
           entomophila L48]
          Length = 254

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C  T C++ CPVD      +    +   EC  C +C P CPVD I  
Sbjct: 81  CIGC--TKCIQACPVDAIVGASKLMHTVIAIECTGCDLCLPACPVDCIDM 128


>gi|71735100|ref|YP_273634.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555653|gb|AAZ34864.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 280

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 74  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEMHPL 131

Query: 61  P 61
           P
Sbjct: 132 P 132


>gi|109899273|ref|YP_662528.1| electron transport complex protein RnfB [Pseudoalteromonas
           atlantica T6c]
 gi|109701554|gb|ABG41474.1| electron transport complex, RnfABCDGE type, B subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 111 AFIREDECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVDPCPVDCIDM 165


>gi|295106299|emb|CBL03842.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 190

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+  +CV  CP    Y  E +  +    ++CI C  C   CP    + 
Sbjct: 50  TYHYSGSCNHCEKPECVAACPNAAMYIDEEDGTVQHDDEKCIGCQYCVKACPYGVPQH 107


>gi|296104198|ref|YP_003614344.1| putative polyferredoxin [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|295058657|gb|ADF63395.1| putative polyferredoxin [Enterobacter cloacae subsp. cloacae ATCC
          13047]
          Length = 291

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 5  VTENC-----ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT  C            C + CPV  F   ++ + I    CI+CG C   CP  AI    
Sbjct: 12 VTHACVRRRFRHASCHACADACPVQAFSFTDSGVLIDDSRCIECGDCLFVCPAGAITGIV 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+LC    C   C           L +  + C  CG CE  C   AI
Sbjct: 192 KCVLC--GACWRSCQEKAIRFENASLRVETEYCTGCGGCEAVCQHAAI 237


>gi|256810171|ref|YP_003127540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256793371|gb|ACV24040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 151

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C+ C++  C E+CPVD  Y  E    +  + CI CG+C   CP+ AI    +
Sbjct: 42 CMQCENAPCKEICPVDAIYLKEGIPIVEKERCIACGMCAIACPIGAIFIKDK 93


>gi|210615651|ref|ZP_03290697.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787]
 gi|210150194|gb|EEA81203.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C +VCP D     +N   I P++C +CG+C  +CP   I 
Sbjct: 218 CIGCKM--CQKVCPSDAIVVEDNIAHIDPEKCTNCGLCAEKCPKKIIM 263



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
            C     CV+ CP D  +  +    +  D C  CG C   CP  
Sbjct: 143 GCLGFGSCVKACPFDAIHIVDGVAVVDKDACKACGKCVAACPKH 186



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 18/74 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD----------------CFYEGENFLAIHPDECIDCGV 45
             V  + C  C    CV  CP                     +G++ L++    CI C +
Sbjct: 166 AVVDKDACKAC--GKCVAACPKHLVELVPYEQKHLVQCSSKDKGKDVLSVCKVGCIGCKM 223

Query: 46  CEPECPVDAIKPDT 59
           C+  CP DAI  + 
Sbjct: 224 CQKVCPSDAIVVED 237


>gi|160903178|ref|YP_001568759.1| dihydroorotate dehydrogenase family protein [Petrotoga mobilis
           SJ95]
 gi|160360822|gb|ABX32436.1| dihydroorotate dehydrogenase family protein [Petrotoga mobilis
           SJ95]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C    CV+ C  D  +  +  + + I  ++C  CG+C   C  +A+
Sbjct: 308 VNDEKCTEC--ALCVKSCVYDAIHLIKELHSVRIDTNKCAGCGLCVTRCNFNAL 359


>gi|124515811|gb|EAY57320.1| NADH dehydrogenase (quinone) [Leptospirillum rubarum]
          Length = 617

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+C  C    C  VCP     +E      I    CI C  C   C   AI
Sbjct: 566 VIEEDCTTC--GLCEPVCPSGSVTWEKGEVAHIDLTTCIRCKACVDACKFRAI 616


>gi|93005680|ref|YP_580117.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter cryohalolentis K5]
 gi|92393358|gb|ABE74633.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter cryohalolentis K5]
          Length = 280

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
             +  ++CI C  T C+  CPVD     G++   I  D C  C +C   CPVD I
Sbjct: 118 AVIREDDCIGC--TKCIPACPVDAIVGTGKHMHTIFTDLCTGCELCIAPCPVDCI 170


>gi|325475391|gb|EGC78574.1| iron-sulfur cluster-binding protein [Treponema denticola F0402]
          Length = 303

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ +NC  CK   C+ VCPV+ F   +  ++I +   CI CG C   C  +AI       
Sbjct: 212 IIHKNCSACKK--CISVCPVNNFIFTDGRVSIKNQKNCILCGECFYNCGCNAIDFAYRTV 269

Query: 63  LELWL---------KINSEYATQWPNITTKKESL 87
            +  L          I++ Y  ++  I  K + L
Sbjct: 270 AQKRLNDGNIVFEKDISAIYPKKYGYINNKGDLL 303


>gi|323698251|ref|ZP_08110163.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323458183|gb|EGB14048.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 267

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V ++C+ C    C E CPV      +       ++CI C  C   CP +A        +E
Sbjct: 191 VGDSCVQC--GTCAEHCPVGAISADDYTKT-DAEKCIKCCACIKVCPENARTTKPGSPIE 247

Query: 65  LWLKINSEYATQWPNITTKKES 86
            + K          N   +KE 
Sbjct: 248 GFAKW------LNENCGERKEP 263


>gi|256371188|ref|YP_003109012.1| NADH-quinone oxidoreductase, chain I [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007772|gb|ACU53339.1| NADH-quinone oxidoreductase, chain I [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 21/82 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP  C Y                       I+   CI C +C   C
Sbjct: 53  EKCIGCEL--CAGACPARCIYVRGANNDPERPTSPGERFGFVYEINYLRCIHCDLCVEAC 110

Query: 51  PVDAIKPDTEPGLELWLKINSE 72
           P +AI   TE  +  +   N E
Sbjct: 111 PTEAI---TESKMFEFAFTNRE 129


>gi|218263820|ref|ZP_03477796.1| hypothetical protein PRABACTJOHN_03486 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222493|gb|EEC95143.1| hypothetical protein PRABACTJOHN_03486 [Parabacteroides johnsonii
           DSM 18315]
          Length = 373

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  E+C  C    CV+ C  D  +    +   I   +C+ CG C   C  D         
Sbjct: 191 IDIESCKGCN--ICVKHCRHDAIHLNTSHKAEIDYGKCVGCGQCVALCQYDGAVMGEGDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N + A     + + K 
Sbjct: 249 SER---LNYKIAEYTQAVLSGKP 268


>gi|217966854|ref|YP_002352360.1| dihydroorotate dehydrogenase [Dictyoglomus turgidum DSM 6724]
 gi|217335953|gb|ACK41746.1| dihydroorotate dehydrogenase [Dictyoglomus turgidum DSM 6724]
          Length = 390

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+ ++ C  C    C +VC  D   E +    I  D C  CG+C   CP  AI  
Sbjct: 327 AYINSDLCTSC--GICKKVCIYDAPIEKDGKYFI-TDLCDGCGLCVRLCPTKAISM 379


>gi|197117061|ref|YP_002137488.1| hydrogenase 2, 4Fe-4S ferredoxin-type protein [Geobacter
           bemidjiensis Bem]
 gi|197086421|gb|ACH37692.1| hydrogenase 2, 4Fe-4S ferredoxin-type protein [Geobacter
           bemidjiensis Bem]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C+  C V+ + + +    I +   C+ C  C   CP +    D E      +
Sbjct: 108 CNHCNEPACLTSCFVNAYTKTKEGAVIYNSKVCVGCRNCMIACPFNVPGYDYESVTNPVI 167

Query: 68  K 68
           K
Sbjct: 168 K 168


>gi|325294269|ref|YP_004280783.1| NIL domain-containing protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064717|gb|ADY72724.1| NIL domain-containing protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 138

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C+  CP + FY  +    +    D+C+ CG C P CP+  I 
Sbjct: 85  EKCVHC--GACIAPCPTNAFYLDQETFKVKFDKDKCVGCGHCIPACPLRIIY 134


>gi|269121613|ref|YP_003309790.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
          termitidis ATCC 33386]
 gi|268615491|gb|ACZ09859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
          termitidis ATCC 33386]
          Length = 57

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +  E CI C    C  VCPV+   E +   AI    CIDCG CE  CPV+AI  +
Sbjct: 1  MAYSINKETCIAC--GACEGVCPVEAIAEADGKYAIDGATCIDCGACEGVCPVEAISGE 57


>gi|218261737|ref|ZP_03476472.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223813|gb|EEC96463.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii
          DSM 18315]
          Length = 301

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C+   CVE CP          +      C  CG+C   CP  A+
Sbjct: 51 KCIGCR--TCVEACPQQALTLTPEGIVTDGARCTLCGICAEVCPALAM 96


>gi|253699321|ref|YP_003020510.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251774171|gb|ACT16752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C+  C V+ + + +    I +   C+ C  C   CP +    D E
Sbjct: 108 CNHCNEPACLTSCFVNAYTKTKEGAVIYNSKVCVGCRNCMIACPFNVPGYDYE 160


>gi|163814915|ref|ZP_02206303.1| hypothetical protein COPEUT_01066 [Coprococcus eutactus ATCC 27759]
 gi|158449854|gb|EDP26849.1| hypothetical protein COPEUT_01066 [Coprococcus eutactus ATCC 27759]
          Length = 597

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++E CI CK       CP     +G   +AI    C  CG+C   CPV AI
Sbjct: 543 ISEKCIQCKKCIREIGCPAIILKDG--KVAIDESLCTGCGLCAQICPVGAI 591


>gi|153864548|ref|ZP_01997417.1| Respiratory nitrate reductase beta chain [Beggiatoa sp. SS]
 gi|152145956|gb|EDN72582.1| Respiratory nitrate reductase beta chain [Beggiatoa sp. SS]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C +  CV  CP    Y+   +  + +  + C     C   CP      + +
Sbjct: 13 CNHCLNPACVASCPSGALYKRGEDGIVLLDQNVCRAWRFCISACPYKKTYYNWK 66


>gi|154244612|ref|YP_001415570.1| formate dehydrogenase, beta subunit [Xanthobacter autotrophicus
           Py2]
 gi|154158697|gb|ABS65913.1| formate dehydrogenase, beta subunit [Xanthobacter autotrophicus
           Py2]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C++ CP      +  N +     D+CI CG C   CP +
Sbjct: 109 KDGCMHCADPGCLKACPAPGAIVQYSNGIVDFDHDKCIGCGYCVKGCPFN 158


>gi|255009556|ref|ZP_05281682.1| ferredoxin [Bacteroides fragilis 3_1_12]
 gi|313147332|ref|ZP_07809525.1| ferredoxin [Bacteroides fragilis 3_1_12]
 gi|313136099|gb|EFR53459.1| ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 290

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV+ CP +      N   I  ++C  C  C   CP + I     P  + 
Sbjct: 218 TVSCIGC--GKCVKTCPFEAITLENNLAYIDYNKCKSCRKCVEVCPQNTIIELNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KEE 278



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C  D  +         +  ++C  CG C   CP   I
Sbjct: 142 CLGC--GDCVAACQFDAIHMNPETGLPEVDEEKCTACGACVKACPKAII 188


>gi|253563042|ref|ZP_04840499.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946818|gb|EES87100.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  T++CI CK   C  +CPV               +C  C  C   CP  A++ 
Sbjct: 187 PFYATDDCIGCK--RCERICPVGNVVMIGWRPV-WGMDCTSCLACYHVCPKHAVQY 239


>gi|149177030|ref|ZP_01855638.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Planctomyces maris DSM 8797]
 gi|148844095|gb|EDL58450.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Planctomyces maris DSM 8797]
          Length = 1031

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C +VCPV    +  E    +  + C+    C   CP    + +     +++ 
Sbjct: 832 CQQCELAPCEQVCPVAATVHTDEGLNDMVYNRCVGTRYCANNCPYKVRRFNYFNFNKIYE 891

Query: 68  K 68
           +
Sbjct: 892 E 892


>gi|327399969|ref|YP_004340808.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327315477|gb|AEA46093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV+VCP +     +   +  +  +CI CG C   C + AI   ++
Sbjct: 53  CRACIEPPCVQVCPTNALRPRKGGGVVYNEKDCIACGNCINACTIGAIFRRSD 105


>gi|332654598|ref|ZP_08420341.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcaceae bacterium D16]
 gi|332516562|gb|EGJ46168.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcaceae bacterium D16]
          Length = 579

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V  + CI CK   C+++ CP     EG     +    C+ CGVCE  CPV A
Sbjct: 524 VNKDKCIGCK--SCMKIGCPAISIKEG--KAWVDNTLCVGCGVCEQLCPVGA 571


>gi|266619056|ref|ZP_06111991.1| sigma-54 dependent transcriptional regulator [Clostridium
          hathewayi DSM 13479]
 gi|288869439|gb|EFD01738.1| sigma-54 dependent transcriptional regulator [Clostridium
          hathewayi DSM 13479]
          Length = 577

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  C V      +    I PD+CI CG C   CP  A
Sbjct: 10 KCKHCYK--CVRNCEVKAIMIKDERAEIMPDKCILCGKCMQVCPQSA 54


>gi|262277293|ref|ZP_06055086.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium
           HIMB114]
 gi|262224396|gb|EEY74855.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium
           HIMB114]
          Length = 161

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP                      I   +CI CG+C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAACPAQAITIESEPKDDGSRKTTRYDIDMVKCIYCGLCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E         TK++ L +  + +  
Sbjct: 117 VQ--GPNFEFTTETREEL------YYTKEKLLENGDRWESE 149


>gi|258404410|ref|YP_003197152.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796637|gb|ACV67574.1| molybdopterin oxidoreductase, ferredoxin subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 258

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C +  C  VCPV    + E    +      CI C  C   CP  +   +    +  
Sbjct: 76  PCMQCGNPSCSTVCPVIATTKDEEGGIVSQIYPRCIGCRYCMAACPYHSRVFNWYDPVWP 135


>gi|258404218|ref|YP_003196960.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796445|gb|ACV67382.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C E CP     + +   +      CI CG C   CPVDAI  D E
Sbjct: 54  CLACDPAPCAEACPTGAMRQRKGGGVVYTKSLCIQCGDCARACPVDAIYMDPE 106



 Score = 38.8 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C   DC   CPVD  Y      A  P  CI CG C   CP D ++  T P    
Sbjct: 86  CIQC--GDCARACPVDAIYMDPETNA--PVVCIHCGRCVEFCPHDCLEMVTVPSASK 138


>gi|258405023|ref|YP_003197765.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797250|gb|ACV68187.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  CK+  C++ C  +   +      + I PD+C     C   CP   I+ D
Sbjct: 65  PCQHCKNAPCIKACKEEAISKDVQTGIVRIDPDKCAGSRACLEACPYGVIQFD 117


>gi|227364666|ref|ZP_03848721.1| possible nitrate reductase [Lactobacillus reuteri MM2-3]
 gi|227070276|gb|EEI08644.1| possible nitrate reductase [Lactobacillus reuteri MM2-3]
          Length = 266

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 183 CEHCLNAPCVASCPSGAMYKRDEDGIVLVDQERCRGWRFCMTGCPYKKVYFNWKTHKAE 241


>gi|187735708|ref|YP_001877820.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425760|gb|ACD05039.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 963

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
           +   C  C    C  VCPV+   +  E   A+    C     C   CP  A
Sbjct: 772 IPVACQQCGKAPCESVCPVNATVHTAEGLNAMVYARCWGTRYCATNCPYKA 822


>gi|15679840|ref|NP_276958.1| indolepyruvate oxidoreductase, alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|6685555|sp|O27880|IORA_METTH RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|2622988|gb|AAB86318.1| indolepyruvate oxidoreductase, alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 618

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 1   MTYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  V  E C LC    C+    CP     EGE  + I P +C  C VC   CP  AIKP+
Sbjct: 561 MA-VDGEKCDLCLE--CIRDLACPAMVTREGE--VFIDPLKCRGCSVCLQICPAGAIKPE 615


>gi|301311164|ref|ZP_07217092.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 20_3]
 gi|300830738|gb|EFK61380.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 20_3]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 219 CIGC--GKCAKECPFEAITVTNNVAYIDYTKCRMCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 34.2 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            C  + DCV  C  D  +         +  ++C  CG C   CP   I
Sbjct: 139 GCLGYGDCVNACAFDAIHINPTTGIAEVDEEKCTSCGACVKACPKSII 186


>gi|148643468|ref|YP_001273981.1| tungsten formylmethanofuran dehydrogenase, subunit E, FwdE
           [Methanobrevibacter smithii ATCC 35061]
 gi|288869596|ref|ZP_05975164.2| tungsten formylmethanofuran dehydrogenase, subunit H
           [Methanobrevibacter smithii DSM 2374]
 gi|89953727|gb|ABD83343.1| FwdE [Methanobrevibacter smithii]
 gi|148552485|gb|ABQ87613.1| tungsten formylmethanofuran dehydrogenase, subunit E, FwdE
           [Methanobrevibacter smithii ATCC 35061]
 gi|288861702|gb|EFC94000.1| tungsten formylmethanofuran dehydrogenase, subunit H
           [Methanobrevibacter smithii DSM 2374]
          Length = 153

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV ++CI C    CV +C +           +   +C  C +C+ ECP ++I
Sbjct: 99  VVADSCIGC--GLCVSMCSMKAIKLESLKAHVDSIQCCGCQLCKDECPTNSI 148


>gi|325297885|ref|YP_004257802.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324317438|gb|ADY35329.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 380

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             +  + C  CK   C+  C  D   F EG   ++I+ D C+ CG C   C  DAI    
Sbjct: 194 PVINQDACRGCK--RCMRECANDGLVFDEGRKKMSINQDNCVGCGRCIGACNFDAIGFAQ 251

Query: 60  EPGLELWLKINSEYATQWPNI 80
           +  ++   ++N   A     +
Sbjct: 252 DAAIK---ELNCRMAEYTKAV 269


>gi|312144195|ref|YP_003995641.1| Fe-S cluster domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904846|gb|ADQ15287.1| Fe-S cluster domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 445

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E C  C  T+CV+ CP       +    I  D C+DC  C   C   A    ++   E+
Sbjct: 11 EEKCEGC--TNCVKGCPTKAIRVHQGKARIKEDLCVDCAECIRVCEYHAKYSKSDQLDEI 68

Query: 66 WLKINSEY 73
             IN +Y
Sbjct: 69 ---INHDY 73


>gi|301309723|ref|ZP_07215662.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300831297|gb|EFK61928.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIK 56
          MT  +  E+CI C    CV VCP D F +      I       CI CG C   CP  ++ 
Sbjct: 1  MTLNIDQESCIKC--GKCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVL 58

Query: 57 PDTEPGLE 64
              P  +
Sbjct: 59 HSEFPPEK 66


>gi|298376411|ref|ZP_06986366.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266289|gb|EFI07947.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIK 56
          MT  +  E+CI C    CV VCP D F +      I       CI CG C   CP  ++ 
Sbjct: 1  MTLNIDQESCIKC--GKCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVL 58

Query: 57 PDTEPGLE 64
              P  +
Sbjct: 59 HSEFPPEK 66


>gi|251792841|ref|YP_003007567.1| electron transport complex protein RnfB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534234|gb|ACS97480.1| electron transport complex protein RnfB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 197

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    I PD C  C +C   CP   I  
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIIGSNKAMHTIIPDLCTGCELCVAPCPTSCISM 161


>gi|156743326|ref|YP_001433455.1| NADH-quinone oxidoreductase subunit I [Roseiflexus castenholzii DSM
           13941]
 gi|156234654|gb|ABU59437.1| NADH-quinone oxidoreductase, chain I [Roseiflexus castenholzii DSM
           13941]
          Length = 165

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 37/121 (30%), Gaps = 26/121 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------------FLAIHPDECIDCGVCEPEC 50
           E CI C    C   CP D                          I+   CI CG CE  C
Sbjct: 50  ERCIGCSL--CAAACPADAILVVPAENDPAAPNSPGERYAARYEINMLRCIFCGYCEDAC 107

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P +AI  + +  L  +         +  +I TK + L    K  G      +  +  P  
Sbjct: 108 PTNAIVLEHQYELSFY--------DRRSSILTKDDLLVPPDKGHGEIPPILEQLNRRPSP 159

Query: 111 K 111
            
Sbjct: 160 P 160


>gi|84488976|ref|YP_447208.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
 gi|84372295|gb|ABC56565.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
          Length = 59

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + +NC+ C    CV  CP+D   EG     I  ++C+ CGVC   CP  AI
Sbjct: 5  PYKINDNCVAC--GLCVNACPIDAIAEGNP-YVIDEEKCVGCGVCAEACPTQAI 55


>gi|78358094|ref|YP_389543.1| radical-activating enzyme [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220499|gb|ABB39848.1| Radical-activating enzyme [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    C++ CP       +  L I  + C  CG C       ++    E      
Sbjct: 58  DECTSC--GRCIDACPNKANSIVDGKLVIDWERCTACGACTSPAVCLSMTRKVEGKPMTV 115

Query: 67  LKINSEYATQW 77
            ++  + ++ +
Sbjct: 116 EEVMKQVSSDY 126


>gi|14590719|ref|NP_142789.1| putative ATPase RIL [Pyrococcus horikoshii OT3]
 gi|3257270|dbj|BAA29953.1| 590aa long hypothetical transport protein [Pyrococcus horikoshii
          OT3]
          Length = 590

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+          E  N   I    C  CG+C  +CP  AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNRPIIQEASCTGCGICVHKCPFKAI 66


>gi|325499127|gb|EGC96986.1| hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           fergusonii ECD227]
          Length = 152

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C+   C  VCPV         + +    CI C  C   CP  A++   +      +
Sbjct: 52  ACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQESQVQAI 111

Query: 68  K 68
           K
Sbjct: 112 K 112


>gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   CV+ CPV     E +    I    C+ CG C   C   A+
Sbjct: 584 CKGCRL--CVKACPVGAIMGEKKQPHRIDEGLCVKCGACAAACKFGAV 629


>gi|262381260|ref|ZP_06074398.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296437|gb|EEY84367.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIK 56
          MT  +  E+CI C    CV VCP D F +      I       CI CG C   CP  ++ 
Sbjct: 1  MTLNIDQESCIKC--GKCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVL 58

Query: 57 PDTEPGLE 64
              P  +
Sbjct: 59 HSEFPPEK 66


>gi|224539362|ref|ZP_03679901.1| hypothetical protein BACCELL_04267 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224519023|gb|EEF88128.1| hypothetical protein BACCELL_04267 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 285

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTE 60
          +    C  C    CV+VCP     + +        +   CI CG C   CP  +I     
Sbjct: 7  IDKSACTQC--GKCVKVCPSGVLLKLDRGSVPQVDNIGFCIGCGHCAAVCPNGSIVHSLF 64

Query: 61 PGLE 64
          P  +
Sbjct: 65 PKEK 68


>gi|145637713|ref|ZP_01793366.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittHH]
 gi|145641064|ref|ZP_01796645.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|148827107|ref|YP_001291860.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittGG]
 gi|145269115|gb|EDK09065.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittHH]
 gi|145274225|gb|EDK14090.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.4-21]
 gi|148718349|gb|ABQ99476.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittGG]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +    I PD C  C +C   CP D I  
Sbjct: 103 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILM 157



 Score = 33.8 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           M  ++ + C  C+   CV  CP DC         I   
Sbjct: 132 MHTIIPDLCTGCEL--CVAPCPTDCILMIPVKKNIDNW 167


>gi|304314315|ref|YP_003849462.1| glutamate synthase, large subunit [Methanothermobacter
          marburgensis str. Marburg]
 gi|302587774|gb|ADL58149.1| predicted glutamate synthase, large subunit [Methanothermobacter
          marburgensis str. Marburg]
          Length = 619

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 18/49 (36%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C    C   C  D        + I  + C+ C +C   CP+ AI  
Sbjct: 45 CQQCVDPSCARGCFRDAIQRENGAVKIDQESCVGCKLCMLMCPIGAITY 93



 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C    C  VCP D     E+   I   +CI CG C   CP
Sbjct: 167 CVFC--GTCEIVCPTDAIEIVEDHAEIDKTKCIMCGSCLAACP 207



 Score = 33.8 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI----DCGVCEPECPVDAI 55
           +  E+C+ CK   C+ +CP+      ++ +     +C+    D   C   C    +
Sbjct: 71  IDQESCVGCKL--CMLMCPIGAITYTDDGMVKCDQQCMESPGDTPACVAACEQGCL 124


>gi|302391758|ref|YP_003827578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203835|gb|ADL12513.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 178

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C  VCP         E+ + I  D+CI C +C   CP   I
Sbjct: 60  CRHCDDAPCETVCPTGAIGRENSESPVVIEKDKCIGCKMCLQVCPFGVI 108


>gi|300704663|ref|YP_003746266.1| 4fe-4S ferredoxin, iron-sulfur binding [Ralstonia solanacearum
           CFBP2957]
 gi|299072327|emb|CBJ43661.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           CFBP2957]
          Length = 268

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E+CI C  T C++ CPVD           +  D C  C +C   CPVD I  
Sbjct: 83  AVIDPEHCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDM 137


>gi|255745043|ref|ZP_05418993.1| iron-sulfur cluster-binding protein [Vibrio cholera CIRS 101]
 gi|255737514|gb|EET92909.1| iron-sulfur cluster-binding protein [Vibrio cholera CIRS 101]
          Length = 504

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 135 KGCE--RCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTD 192

Query: 63  LELWLK 68
            + +++
Sbjct: 193 TQKFIE 198



 Score = 38.0 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           T +C LC    CV VCP    +       L     +C+ CG+C   CP  
Sbjct: 368 TSDCTLC--MSCVAVCPTRALHLAGDSPALRFIEQDCVQCGLCVKACPEQ 415


>gi|256829899|ref|YP_003158627.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579075|gb|ACU90211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 427

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 11/59 (18%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECP 51
             V  + C  C    C   CPV+                   +  + C+ CGVC   CP
Sbjct: 286 PVVDEDLCNGC--GKCASACPVEAMSIVSANDPRQPKRKKARVDENICLGCGVCVRACP 342


>gi|207723881|ref|YP_002254279.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum MolK2]
 gi|206589086|emb|CAQ36048.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum MolK2]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118


>gi|196231247|ref|ZP_03130106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
 gi|196224583|gb|EDY19094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPV 52
           V + C+ C+   C +VCP D   + E  + +  +   C+ C  C   CP 
Sbjct: 55  VMQICMHCEDPACAKVCPADAIVKDEFGVVMSANTSRCVGCSNCVLACPF 104


>gi|188585713|ref|YP_001917258.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350400|gb|ACB84670.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 4   VVTENCI-LCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V ENC   C     C E CPV       +   I  ++C++CG+C+ +CP   I  ++E
Sbjct: 225 IVKENCQYGCLGCGICREQCPVGAINLDNDLAVIDQNKCVNCGLCKDKCPTACIVSESE 283



 Score = 38.0 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI      CVE CP +     ++ L  I+ D C  C  C   CP   I+       + ++
Sbjct: 158 CIG--LATCVETCPFEAIEMRDDGLPRINHDICRGCATCVNTCPKSVIRLIPGDRYKHFI 215

Query: 68  KIN 70
             N
Sbjct: 216 YCN 218


>gi|154500597|ref|ZP_02038635.1| hypothetical protein BACCAP_04270 [Bacteroides capillosus ATCC
          29799]
 gi|150270486|gb|EDM97795.1| hypothetical protein BACCAP_04270 [Bacteroides capillosus ATCC
          29799]
          Length = 557

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          NC  C    C+  CPV      ++   I PDECI CG C   CP +A +   +
Sbjct: 11 NCKNCYK--CIRNCPVKSIRFSDHQANIVPDECILCGRCFVACPQNAKEVRDD 61


>gi|90408373|ref|ZP_01216536.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3]
 gi|90310536|gb|EAS38658.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3]
          Length = 190

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           +  DEC  C +C   CP D I  
Sbjct: 106 AFIREDECIGC--TKCIQACPVDAILGATRQMHTVITDECTGCELCVAPCPTDCIDM 160



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C+   CV  CP DC   
Sbjct: 135 MHTVITDECTGCEL--CVAPCPTDCIDM 160


>gi|53712980|ref|YP_098972.1| hypothetical protein BF1691 [Bacteroides fragilis YCH46]
 gi|60681192|ref|YP_211336.1| putative ferredoxin [Bacteroides fragilis NCTC 9343]
 gi|265763077|ref|ZP_06091645.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52215845|dbj|BAD48438.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60492626|emb|CAH07398.1| putative ferredoxin [Bacteroides fragilis NCTC 9343]
 gi|263255685|gb|EEZ27031.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162681|emb|CBW22228.1| putative ferredoxin [Bacteroides fragilis 638R]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  T++CI CK   C  +CPV               +C  C  C   CP  A++ 
Sbjct: 187 PFYATDDCIGCK--RCERICPVGNVVMIGWRPV-WGMDCTSCLACYHVCPKHAVQY 239


>gi|227143|prf||1615261A ferredoxin
          Length = 55

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  AYKILDTCVSC--GACAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGAPVQE 55


>gi|17546773|ref|NP_520175.1| NADH dehydrogenase subunit I [Ralstonia solanacearum GMI1000]
 gi|83746305|ref|ZP_00943358.1| NADH-quinone oxidoreductase chain I [Ralstonia solanacearum UW551]
 gi|187929285|ref|YP_001899772.1| NADH dehydrogenase subunit I [Ralstonia pickettii 12J]
 gi|207742743|ref|YP_002259135.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum IPO1609]
 gi|241663476|ref|YP_002981836.1| NADH dehydrogenase subunit I [Ralstonia pickettii 12D]
 gi|309781860|ref|ZP_07676593.1| NADH dehydrogenase (ubiquinone), I subunit [Ralstonia sp.
           5_7_47FAA]
 gi|81504319|sp|Q8XXQ9|NUOI_RALSO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|17429073|emb|CAD15761.1| probable nadh dehydrogenaseI(chainI oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 gi|83727055|gb|EAP74180.1| NADH-quinone oxidoreductase chain I [Ralstonia solanacearum UW551]
 gi|187726175|gb|ACD27340.1| NADH-quinone oxidoreductase, chain I [Ralstonia pickettii 12J]
 gi|206594137|emb|CAQ61064.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum IPO1609]
 gi|240865503|gb|ACS63164.1| NADH-quinone oxidoreductase, chain I [Ralstonia pickettii 12D]
 gi|299066341|emb|CBJ37525.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           CMR15]
 gi|308919501|gb|EFP65165.1| NADH dehydrogenase (ubiquinone), I subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118


>gi|323692574|ref|ZP_08106807.1| hypothetical protein HMPREF9475_01670 [Clostridium symbiosum
          WAL-14673]
 gi|323503440|gb|EGB19269.1| hypothetical protein HMPREF9475_01670 [Clostridium symbiosum
          WAL-14673]
          Length = 599

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    CV  C V      +    +  D+C+ CG C   CP  A    ++     + 
Sbjct: 10 KCMHCYK--CVRYCDVKAVMIKDGRAEVIEDKCVLCGHCLHVCPQSAKTMASDLDTVKYY 67


>gi|323483612|ref|ZP_08088996.1| hypothetical protein HMPREF9474_00745 [Clostridium symbiosum
          WAL-14163]
 gi|323403039|gb|EGA95353.1| hypothetical protein HMPREF9474_00745 [Clostridium symbiosum
          WAL-14163]
          Length = 599

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    CV  C V      +    +  D+C+ CG C   CP  A    ++     + 
Sbjct: 10 KCMHCYK--CVRYCDVKAVMIKDGRAEVIEDKCVLCGHCLHVCPQSAKTMASDLDTVKYY 67


>gi|308272512|emb|CBX29116.1| hypothetical protein N47_J00970 [uncultured Desulfobacterium sp.]
          Length = 822

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +    C  C    C  +CP +     +     I  D C  CG+C   CP +AI   +E
Sbjct: 636 IDKNKCARCL--TCYRICPHNAVTIRDNYQPVISTDACFGCGICVSHCPANAISVISE 691


>gi|224370292|ref|YP_002604456.1| putative NADPH-dependent glutamate synthase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693009|gb|ACN16292.1| putative NADPH-dependent glutamate synthase [Desulfobacterium
           autotrophicum HRM2]
          Length = 690

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI     DC++ C       G     I   D+C+ CG C+  CP D I  + +   E  L
Sbjct: 137 CIG--LGDCIKACKFGALSMGPKGHPIVDDDKCVGCGACQKACPKDII--EVKSLSEKLL 192

Query: 68  KINSE 72
           K N +
Sbjct: 193 KFNQK 197


>gi|219851137|ref|YP_002465569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanosphaerula palustris E1-9c]
 gi|219545396|gb|ACL15846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanosphaerula palustris E1-9c]
          Length = 57

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V ++ C+ C+   CV+ CP +          I  D+C+DCG C   CP  AI  D
Sbjct: 5  VDSDLCVGCE--TCVDECPAEAIAMANGIAVIDKDKCVDCGSCVEVCPSSAITMD 57


>gi|315230769|ref|YP_004071205.1| MinD-like P-loop ATPase [Thermococcus barophilus MP]
 gi|315183797|gb|ADT83982.1| MinD-like P-loop ATPase [Thermococcus barophilus MP]
          Length = 295

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           +  + CI C    C E CP +     +    ++   C  CGVC+  CP
Sbjct: 66  IDQDTCIRC--GICYERCPYESIKLVDGKYVVNELTCEGCGVCKLVCP 111


>gi|153953474|ref|YP_001394239.1| hypothetical protein CKL_0840 [Clostridium kluyveri DSM 555]
 gi|219854096|ref|YP_002471218.1| hypothetical protein CKR_0753 [Clostridium kluyveri NBRC 12016]
 gi|146346355|gb|EDK32891.1| Hypothetical protein CKL_0840 [Clostridium kluyveri DSM 555]
 gi|219567820|dbj|BAH05804.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 178

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    CV VCPV    E    + +  D+CI C  C   C V A+ 
Sbjct: 64  CRHCTEAFCVNVCPVKAIVENHGSIFVQEDKCIGCKNCMLVCAVGAVN 111


>gi|160877102|ref|YP_001556418.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|160862624|gb|ABX51158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|315269306|gb|ADT96159.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           +C  C++  CV VCP    +       + +   +C  C  C   CP +A
Sbjct: 105 SCQQCRNAPCVTVCPTGAAHRDPATGIVTMDASKCAGCKYCIGACPYNA 153


>gi|91203437|emb|CAJ71090.1| similar to NAD(P) oxidoreductase, FAD-containing subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 700

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            YV    C+ C    CV VCP D   F  GE    I   +C  CG+C  ECP  AI+  T
Sbjct: 491 AYVDEHLCVGCI--TCVRVCPFDVPEFRNGEITAYI-GGDCQSCGLCIVECPAKAIRFKT 547

Query: 60  EPGL 63
               
Sbjct: 548 PLED 551


>gi|78356242|ref|YP_387691.1| nitroreductase family protein [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
 gi|78218647|gb|ABB37996.1| nitroreductase family protein [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
          Length = 278

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAI 55
          + TE CI C   +C   CP           A+ P     CI C  C   CP  A+
Sbjct: 6  IATERCIGC--AECARDCPTGIIRMENGIPAVAPRREKRCIGCLHCVTVCPCGAL 58


>gi|150015601|ref|YP_001307855.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149902066|gb|ABR32899.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 14/91 (15%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V  + CI C    CV  CP       EN    I  +ECI CG C   CP +AI     P 
Sbjct: 6  VNQDKCIKC--GLCVNECPERVLEPSENGPKEICGEECISCGHCVAICPREAIDNIKTPL 63

Query: 63 LELWLKINSEYATQWPNITTKKESLPSAAKM 93
                 N   + ++P     K S   A   
Sbjct: 64 A------NQISSKRFP-----KLSPEEAENF 83


>gi|238796520|ref|ZP_04640028.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC
           43969]
 gi|238719725|gb|EEQ11533.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC
           43969]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIEM 164


>gi|331092302|ref|ZP_08341130.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401734|gb|EGG81313.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I  D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSC--GACEAECPVGAISQGADHYEISADACVDCGACAAQCPTGAISAE 56


>gi|213963222|ref|ZP_03391479.1| iron-sulfur binding oxidoreductase [Capnocytophaga sputigena Capno]
 gi|213954084|gb|EEB65409.1| iron-sulfur binding oxidoreductase [Capnocytophaga sputigena Capno]
          Length = 981

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C  VCPV    +  +    +  + C+    C   CP    + + 
Sbjct: 810 CQHCNNAPCETVCPVIATAHGQQGQNQMAYNRCVGTRYCANNCPYKVRRFNW 861


>gi|254449936|ref|ZP_05063373.1| cytochrome c oxidase accessory protein CcoG [Octadecabacter
           antarcticus 238]
 gi|198264342|gb|EDY88612.1| cytochrome c oxidase accessory protein CcoG [Octadecabacter
           antarcticus 238]
          Length = 441

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCPV               ECI CG+C   C     K     GL  +L 
Sbjct: 223 CIDC--MACVNVCPVGIDIRDGQ-----QMECITCGLCIDACDDIITKIGKPRGLVDYLS 275

Query: 69  INSEYATQWPNITTK 83
           ++ E A +    T +
Sbjct: 276 LDDEDAERKGQPTKR 290


>gi|158523129|ref|YP_001530999.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511955|gb|ABW68922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 392

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    CV  C ++ F   +    ++ D+CI CG+C   C   A+
Sbjct: 303 CNGC--GKCVRRCQMNAFVVKDKMAVLNIDKCIGCGLCVTTCKTGAL 347


>gi|317493927|ref|ZP_07952344.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918254|gb|EFV39596.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+      + + ++   C+ C +C   CP  AI  +    L +   
Sbjct: 51  CHQCEDAPCAQVCPVNAITHTNDSIQLNESLCVSCKLCGIACPFGAITMNGSKPLHIPAN 110

Query: 69  INSEYATQWPN 79
            N+  A   P 
Sbjct: 111 SNTPMALPAPP 121


>gi|270296812|ref|ZP_06203011.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272799|gb|EFA18662.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 373

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   +CI C    CV+ C  D  +        I   +C+ CG C   C  D      E  
Sbjct: 191 IDEASCIGCN--ICVKHCAHDAVHLNASRKAEIDYAKCVGCGQCVALCQHDGAVMGAEDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N + A     +   K 
Sbjct: 249 SER---LNYKIAEYALAVVMGKP 268


>gi|261403301|ref|YP_003247525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370294|gb|ACX73043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 154

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C++  C E+CPVD  Y  +    +  ++CI CG+C   CP+ AI 
Sbjct: 42 CMQCENAPCKEICPVDAIYLKDGIPIVSKEKCIACGMCALACPIGAIF 89


>gi|226356948|ref|YP_002786688.1| polyferredoxin [Deinococcus deserti VCD115]
 gi|226318938|gb|ACO46934.1| putative polyferredoxin [Deinococcus deserti VCD115]
          Length = 341

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 7/61 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V E CI C    C  VCP +         G   L +    C  C  C   CP  AI    
Sbjct: 264 VDEKCIDC--PVCANVCPTEAITRDLQPDGGVRLLLDLSACTGCMACLHSCPPGAIYAQD 321

Query: 60  E 60
           E
Sbjct: 322 E 322



 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 11 LCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C    C   CP      G     + I PD C  CG+C   CP  A++   +P L+
Sbjct: 33 GCD--ACHTTCPHQAVNLGPLGASIQIDPDLCTGCGLCVQVCPTGALEYGLQPALQ 86


>gi|225849208|ref|YP_002729372.1| selenate reductase subunit beta (Selenate reductaseiron-sulfur
           subunit) [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643650|gb|ACN98700.1| selenate reductase subunit beta (Selenate reductaseiron-sulfur
           subunit) [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 383

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           + +   C  C +  C+  CP +  ++ E    + +  + C     C   CP   I  
Sbjct: 124 FYIPRICNHCSNPGCLAACPREAIFKREQDGIVLVDLERCQGYRYCIAGCPYKKIYF 180


>gi|225175901|ref|ZP_03729893.1| aldo/keto reductase [Dethiobacter alkaliphilus AHT 1]
 gi|225168489|gb|EEG77291.1| aldo/keto reductase [Dethiobacter alkaliphilus AHT 1]
          Length = 315

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YVV   C  C   +CVE C        +    I    CI CG C   CP   I
Sbjct: 263 YVVK-FCKGC--GNCVESCEQGAISMVDEKAYIEHSNCILCGYCRKSCPHSMI 312


>gi|134046735|ref|YP_001098220.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664360|gb|ABO36006.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 658

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV  + C  C    C   CP++   E +                      I  + CIDCG
Sbjct: 240 YVDEDICTGC--GACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKEHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C  +A++ D +P    
Sbjct: 298 LCAKVCCAEAVRYDQKPQELK 318



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  E C  CK   C  +CP +        G          C  CG C   CP  A++
Sbjct: 577 ATVNEEVCGGCK--VCALMCPYNAITYEEKDGHLVAVTDDVACKGCGSCAAACPSGAMQ 633


>gi|332798931|ref|YP_004460430.1| putative PAS/PAC sensor protein [Tepidanaerobacter sp. Re1]
 gi|332696666|gb|AEE91123.1| putative PAS/PAC sensor protein [Tepidanaerobacter sp. Re1]
          Length = 573

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          NC  C    C+  CPV      ++   I  + CI CG C   CP +A    ++      L
Sbjct: 10 NCKNCYK--CIRACPVKAIRMKDDQAEIVDERCITCGTCLTICPQNAKTVKSDVQRVKHL 67

Query: 68 KIN 70
            N
Sbjct: 68 LKN 70


>gi|320533521|ref|ZP_08034185.1| nitrate reductase, beta subunit [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134265|gb|EFW26549.1| nitrate reductase, beta subunit [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 316

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV  CP    Y+   +  + +  D C    +C   CP   +  
Sbjct: 184 CEHCLNPTCVSACPSGAMYKRTEDGIVLVDQDACRGWRMCVSSCPYKKVYF 234


>gi|296109071|ref|YP_003616020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295433885|gb|ADG13056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 392

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT+NC+ CK   C+  CPV+     E  N + I  ++CI C +C   CP +AI 
Sbjct: 135 VVTDNCVGCK--ICIPECPVNAITFNEETNKVEIDKNKCIYCSICAQTCPWNAIY 187



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           V  ++C+ CK   CVE+CP +     E+ L + P + C  C +C   CPV+A++ D E
Sbjct: 205 VNEDSCVFCKL--CVEICPGNMIKSDESKLVVIPPKSCPACKLCVNICPVNALELDVE 260


>gi|169335425|ref|ZP_02862618.1| hypothetical protein ANASTE_01837 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258163|gb|EDS72129.1| hypothetical protein ANASTE_01837 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 114

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +C  C    C++ C      + +  ++++ ++CI C  C   CP  A+ PD E
Sbjct: 27 SCRHCDDAICLKSCISGALTKKDGLISVNKEKCIGCLTCVLVCPYGAVHPDEE 79



 Score = 35.7 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 7/61 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCGVCEPECPVDAIKPD 58
           V  E CI C    CV VCP    +  E    +   E           C   CP +AI  +
Sbjct: 54  VNKEKCIGCL--TCVLVCPYGAVHPDEENGVVDKCEFCTNNLKGEPNCVKGCPNNAIVFE 111

Query: 59  T 59
            
Sbjct: 112 E 112


>gi|167629551|ref|YP_001680050.1| 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167592291|gb|ABZ84039.1| 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 607

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 6   TEN---CILCKHT-DCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TE    C+ CK    C+ + CP   F +      ++   C  CG+C   C  DA++   E
Sbjct: 548 TEKALECVGCKGCKACLRIGCPALSFDKANRKAVVNSALCTGCGLCAQLCMFDALRKVGE 607


>gi|84502622|ref|ZP_01000741.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597]
 gi|84389017|gb|EAQ01815.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597]
          Length = 164

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  EERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K + L +  + +  
Sbjct: 120 V--EGPNFEFATETREEL------YYDKAKLLANGERWEAE 152


>gi|312137196|ref|YP_004004533.1| formylmethanofuran dehydrogenase, subunit h [Methanothermus
           fervidus DSM 2088]
 gi|311224915|gb|ADP77771.1| formylmethanofuran dehydrogenase, subunit H [Methanothermus
           fervidus DSM 2088]
          Length = 154

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V ++CI C    C E CP+D          ++   C  C  C   C  ++I+   
Sbjct: 96  VKDSCIGC--GTCSEKCPMDAIKISGLKAKVNSKLCCGCEFCIKVCKTNSIEIME 148


>gi|288931625|ref|YP_003435685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893873|gb|ADC65410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 228

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 4   VVTENCILCKHTDCVEVCP---VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            V  NC+ C+   C   C    V    + E  +  I  ++CI C  C   CP  A +   
Sbjct: 52  FVPMNCMHCEDPPCKRACDAIGVGAITKNEYGVVLIDYEKCIGCKYCIAVCPYGAPQYIK 111

Query: 60  E 60
           E
Sbjct: 112 E 112


>gi|269791962|ref|YP_003316866.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099597|gb|ACZ18584.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 269

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C +VCP       +N   I   +C  CG C  +CP  +I
Sbjct: 218 CIGC--GLCSKVCPEGAITMEDNLPVIDQSKCTQCGKCVEKCPTKSI 262



 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 8   NCI-LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+  C     CV VCP D  +   +   I  + C+ CG+C   CP   I
Sbjct: 139 ACVFGCLGLGTCVAVCPFDAIHIENSLARIDENRCVGCGLCVASCPKGVI 188



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 18/72 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----------------YEGENFLAIHPDECIDCGVCE 47
           +    C+ C    CV  CP                    + G +   +    CI CG+C 
Sbjct: 168 IDENRCVGC--GLCVASCPKGVIELVVQDKRVRVACNSHHRGLDVKNVCQLGCIGCGLCS 225

Query: 48  PECPVDAIKPDT 59
             CP  AI  + 
Sbjct: 226 KVCPEGAITMED 237


>gi|207743646|ref|YP_002260038.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum IPO1609]
 gi|206595045|emb|CAQ61972.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum IPO1609]
          Length = 265

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E+CI C  T C++ CPVD           +  D C  C +C   CPVD I  
Sbjct: 80  AVIDPEHCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDM 134


>gi|154492926|ref|ZP_02032552.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
          43184]
 gi|154087231|gb|EDN86276.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
          43184]
          Length = 301

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C+   CVE CP          +      C  CG+C   CP  A+
Sbjct: 51 KCIGCR--TCVEACPEQALTLTPEGIVTDGARCTLCGICAEVCPAMAM 96


>gi|22124514|ref|NP_667937.1| 4Fe-4S ferrodoxin [Yersinia pestis KIM 10]
 gi|45440351|ref|NP_991890.1| 4Fe-4S ferrodoxin [Yersinia pestis biovar Microtus str. 91001]
 gi|51594749|ref|YP_068940.1| 4Fe-4S ferrodoxin [Yersinia pseudotuberculosis IP 32953]
 gi|108809929|ref|YP_653845.1| 4Fe-4S ferrodoxin [Yersinia pestis Antiqua]
 gi|108813487|ref|YP_649254.1| 4Fe-4S ferrodoxin [Yersinia pestis Nepal516]
 gi|145600877|ref|YP_001164953.1| 4Fe-4S ferrodoxin [Yersinia pestis Pestoides F]
 gi|150260613|ref|ZP_01917341.1| 4Fe-4S ferrodoxin [Yersinia pestis CA88-4125]
 gi|162419138|ref|YP_001605307.1| 4Fe-4S ferrodoxin [Yersinia pestis Angola]
 gi|165926721|ref|ZP_02222553.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936565|ref|ZP_02225133.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011874|ref|ZP_02232772.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166214051|ref|ZP_02240086.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167400673|ref|ZP_02306182.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418786|ref|ZP_02310539.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423198|ref|ZP_02314951.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469246|ref|ZP_02333950.1| iron-sulfur cluster-binding protein [Yersinia pestis FV-1]
 gi|186893756|ref|YP_001870868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|218927546|ref|YP_002345421.1| 4Fe-4S ferrodoxin [Yersinia pestis CO92]
 gi|229836601|ref|ZP_04456767.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis Pestoides A]
 gi|229840210|ref|ZP_04460369.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229842291|ref|ZP_04462446.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229903971|ref|ZP_04519084.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis Nepal516]
 gi|270489043|ref|ZP_06206117.1| 4Fe-4S binding domain protein [Yersinia pestis KIM D27]
 gi|294502455|ref|YP_003566517.1| 4Fe-4S ferrodoxin [Yersinia pestis Z176003]
 gi|21957309|gb|AAM84188.1|AE013662_2 electron transport protein [Yersinia pestis KIM 10]
 gi|45435207|gb|AAS60767.1| 4Fe-4S ferrodoxin [Yersinia pestis biovar Microtus str. 91001]
 gi|51588031|emb|CAH19637.1| 4Fe-4S ferrodoxin [Yersinia pseudotuberculosis IP 32953]
 gi|108777135|gb|ABG19654.1| 4Fe-4S ferrodoxin [Yersinia pestis Nepal516]
 gi|108781842|gb|ABG15900.1| 4Fe-4S ferrodoxin [Yersinia pestis Antiqua]
 gi|115346157|emb|CAL19025.1| 4Fe-4S ferrodoxin [Yersinia pestis CO92]
 gi|145212573|gb|ABP41980.1| 4Fe-4S ferrodoxin [Yersinia pestis Pestoides F]
 gi|149290021|gb|EDM40098.1| 4Fe-4S ferrodoxin [Yersinia pestis CA88-4125]
 gi|162351953|gb|ABX85901.1| iron-sulfur cluster-binding protein [Yersinia pestis Angola]
 gi|165915681|gb|EDR34290.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921344|gb|EDR38568.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989233|gb|EDR41534.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204846|gb|EDR49326.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962780|gb|EDR58801.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050041|gb|EDR61449.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057368|gb|EDR67114.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186696782|gb|ACC87411.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679741|gb|EEO75844.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis Nepal516]
 gi|229690601|gb|EEO82655.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696576|gb|EEO86623.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706285|gb|EEO92293.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis Pestoides A]
 gi|262360486|gb|ACY57207.1| 4Fe-4S ferrodoxin [Yersinia pestis D106004]
 gi|262364432|gb|ACY60989.1| 4Fe-4S ferrodoxin [Yersinia pestis D182038]
 gi|270337547|gb|EFA48324.1| 4Fe-4S binding domain protein [Yersinia pestis KIM D27]
 gi|294352914|gb|ADE63255.1| 4Fe-4S ferrodoxin [Yersinia pestis Z176003]
 gi|320013792|gb|ADV97363.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 185

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C   CP      G + + +    CI C  C   CP  A+     P  
Sbjct: 58  CHQCEDAPCENACPNGAIITGSHGVQLLASRCIGCKTCMLVCPFGAMSIIERPAD 112


>gi|329962551|ref|ZP_08300532.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328529807|gb|EGF56699.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 373

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + T +CI C    CV+ C  D  +   +    I   +C+ CG C   C  DA        
Sbjct: 191 IDTGHCIGCN--ICVKHCAHDAVHLNAQRKAEIDYVKCVGCGQCVALCQHDAAVVSD--- 245

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            +   ++N + A     +   K 
Sbjct: 246 WDTSERLNYKIAEYSLAVVKDKP 268


>gi|326387453|ref|ZP_08209062.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208109|gb|EGD58917.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 161

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C+  CPVDA+
Sbjct: 59  EERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIFCGFCQEACPVDAV 116

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                P  E   +   E       +  K + L +  K +
Sbjct: 117 V--EGPNFEYATETREEL------LYDKAKLLANGDKWE 147


>gi|322515042|ref|ZP_08068050.1| electron transport complex protein RnfB [Actinobacillus ureae ATCC
           25976]
 gi|322118922|gb|EFX91099.1| electron transport complex protein RnfB [Actinobacillus ureae ATCC
           25976]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +V  + CI C  T C++ CPVD      +    I  D C  C +C   CP + I+ 
Sbjct: 109 AFVHEDMCIGC--TKCIQACPVDAIIGTNKAMHTIIADLCTGCELCVAPCPTNCIEM 163


>gi|283835948|ref|ZP_06355689.1| hypothetical protein CIT292_10358 [Citrobacter youngae ATCC 29220]
 gi|291068126|gb|EFE06235.1| electron transport protein HydN [Citrobacter youngae ATCC 29220]
          Length = 157

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 18/49 (36%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCP          + +   +CI C  C   CP  A+ 
Sbjct: 57  ACHQCEDAPCANVCPTHAIRRERGHIFVEQAQCIGCKSCMVACPFGAMN 105


>gi|153947862|ref|YP_001402637.1| iron-sulfur cluster-binding protein [Yersinia pseudotuberculosis IP
           31758]
 gi|170026044|ref|YP_001722549.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Yersinia pseudotuberculosis YPIII]
 gi|152959357|gb|ABS46818.1| iron-sulfur cluster-binding protein [Yersinia pseudotuberculosis IP
           31758]
 gi|169752578|gb|ACA70096.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Yersinia
           pseudotuberculosis YPIII]
          Length = 185

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C   CP      G + + +    CI C  C   CP  A+     P  
Sbjct: 58  CHQCEDAPCENACPNGAIITGSHGVQLLASRCIGCKTCMLVCPFGAMSIIERPAD 112


>gi|312881025|ref|ZP_07740825.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
 gi|310784316|gb|EFQ24714.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
          Length = 576

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          Y  T NC  C    C+  CPV      E    + P+ C+ CG+C   CP  A     +
Sbjct: 8  YTQTNNCHDCFK--CLRQCPVKAIRLEEGHARVLPELCVSCGLCVEVCPAKAKCIRDD 63


>gi|303246327|ref|ZP_07332607.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302492390|gb|EFL52262.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 350

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   C V  F + E    +     C+ C  C   CP +    + +
Sbjct: 108 CNHCMEPACASACFVKAFKKTETGAVVYDASLCVGCRYCMVACPFNIPTYEYD 160


>gi|262195634|ref|YP_003266843.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Haliangium ochraceum DSM 14365]
 gi|262078981|gb|ACY14950.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Haliangium ochraceum DSM 14365]
          Length = 1087

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
            C  C+   C +VCPV    +  E    +  + C+    C   CP  
Sbjct: 905 ACQQCEMAPCEQVCPVGATIHSSEGLNDMVYNRCVGTRYCLNNCPYR 951


>gi|222445704|ref|ZP_03608219.1| hypothetical protein METSMIALI_01345 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435269|gb|EEE42434.1| hypothetical protein METSMIALI_01345 [Methanobrevibacter smithii
           DSM 2375]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV ++CI C    CV +C +           +   +C  C +C+ ECP ++I
Sbjct: 95  VVADSCIGC--GLCVSMCSMKAIKLESLKAHVDSIQCCGCQLCKDECPTNSI 144


>gi|297619218|ref|YP_003707323.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
 gi|297378195|gb|ADI36350.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C E C  D      +  + I    C  CG+CE  CPVDAI  + E
Sbjct: 69  DLCTNCKL--CYEKCRFDAILLDKDENVVIDDLSCEGCGLCEYICPVDAITMEDE 121


>gi|7321233|emb|CAB82179.1| nitrate reductase beta-subunit [Pseudomonas stutzeri]
          Length = 327

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   CP+   Y+ E    + I  ++C    +C   CP   I  + +
Sbjct: 168 CEHCLIPACCASCPIGAIYKREEDGIVLIDQEKCRGWRMCISGCPYKKIYFNWK 221


>gi|53725521|ref|YP_103524.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76812165|ref|YP_332747.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|52428944|gb|AAU49537.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           23344]
 gi|76581618|gb|ABA51093.1| electron transport complex, RnfABCDGE type, B subunit subfamily,
           putative [Burkholderia pseudomallei 1710b]
          Length = 316

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 106 AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 160


>gi|125974056|ref|YP_001037966.1| 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium thermocellum
           ATCC 27405]
 gi|256004468|ref|ZP_05429448.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281418206|ref|ZP_06249226.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum JW20]
 gi|125714281|gb|ABN52773.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           thermocellum ATCC 27405]
 gi|255991609|gb|EEU01711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281409608|gb|EFB39866.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum JW20]
 gi|316941302|gb|ADU75336.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum DSM 1313]
          Length = 377

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++    C  C+   C++ C  +          + +  + C+ CG C   C  DAI  + 
Sbjct: 191 PHIDQHLCRGCR--SCLKECANNALVFDTVHKKMTVDKENCVGCGRCLGSCNFDAISFED 248

Query: 60  EPGLELWLKINSEYAT 75
           +  +E      +EYA 
Sbjct: 249 DAAIEQLNCRMAEYAK 264


>gi|332305736|ref|YP_004433587.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173065|gb|AEE22319.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 111 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVDPCPVDCIDM 165


>gi|323706138|ref|ZP_08117707.1| hydrogenase large subunit domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323534582|gb|EGB24364.1| hydrogenase large subunit domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 572

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I    CI CG C   CP +A
Sbjct: 10 NCRNCYK--CIRYCPVKAIKVNNEQAEIIEYRCIACGRCLNICPQNA 54


>gi|320352754|ref|YP_004194093.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320121256|gb|ADW16802.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           C  C    C+  C V+ + +      +  P  C+ C  C   CP  
Sbjct: 116 CNHCLEPACLTSCFVNAYTKTPEGAVVYDPSVCVGCRTCMIACPFY 161


>gi|302343562|ref|YP_003808091.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
 gi|301640175|gb|ADK85497.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
          Length = 1012

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDA 54
             +  + C+ C    C E+CP     +   +    ++   C  CG C   C   A
Sbjct: 939 AVIDKKKCVGC--GVCWEICPYSAITQDSADGLAVVNEALCKGCGTCVASCRSGA 991


>gi|269216555|ref|ZP_06160409.1| indolepyruvate oxidoreductase subunit IorA [Slackia exigua ATCC
           700122]
 gi|269130084|gb|EEZ61166.1| indolepyruvate oxidoreductase subunit IorA [Slackia exigua ATCC
           700122]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C+       CP   F +      I    C+ CG C   CP  A+
Sbjct: 590 VDQDACTKCRRCITAIGCPAIGFMDDRIM--IDETICMGCGQCVQVCPYGAM 639



 Score = 33.4 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           +    C+ C    CV+VCP       +    
Sbjct: 619 IDETICMGC--GQCVQVCPYGAMTVPDGMPV 647


>gi|260892888|ref|YP_003238985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260865029|gb|ACX52135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 656

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C+E C        +  + ++   C  CG C   CP  A+        
Sbjct: 584 VYPERCNGC--GICLEECSYGALKLKDGKVEVNEAVCQGCGACAAMCPQMALGVRGYTID 641

Query: 64  ELWLKINSEYAT 75
           +    I++  A 
Sbjct: 642 QFAAMIDAAIAE 653



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 20/76 (26%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGVC 46
           V E C  C    C EVCPV+                           A+  D C  CG C
Sbjct: 241 VDEKCDRC--GRCEEVCPVEVPDSFNYGLSLRKAIYFPHPDAFPSRYAVDLDHCTKCGEC 298

Query: 47  EPECPVDAIKPDTEPG 62
              CP   I  + +  
Sbjct: 299 VKVCPRGLINLEQKEK 314


>gi|147676577|ref|YP_001210792.1| dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Pelotomaculum thermopropionicum SI]
 gi|146272674|dbj|BAF58423.1| dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Pelotomaculum thermopropionicum SI]
          Length = 283

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E C+ C    C +VCP       E    IH   C+  G C   CP DA
Sbjct: 162 EEKCVGC--GLCQKVCPRQAISMAEGKPYIHRSRCLLEGNCISSCPADA 208


>gi|116328887|ref|YP_798607.1| Fe-S-cluster-containing hydrogenase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330507|ref|YP_800225.1| Fe-S-cluster-containing hydrogenase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121631|gb|ABJ79674.1| Fe-S-cluster-containing hydrogenase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124196|gb|ABJ75467.1| Fe-S-cluster-containing hydrogenase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 1025

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C +  C  VCPV    +  E    +  + C+    C   CP    + +     
Sbjct: 857 CQQCDNAPCETVCPVLATVHSSEGINDMVYNRCVGTRYCSNNCPYKVRRFNWMQHW 912


>gi|45656765|ref|YP_000851.1| molybdopterin oxidoreductase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600001|gb|AAS69488.1| molybdopterin oxidoreductase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 1035

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C +  C  VCPV    +  E    +  + C+    C   CP    + +     
Sbjct: 860 CQQCDNAPCETVCPVLATVHSSEGINDMVYNRCVGTRYCSNNCPYKVRRFNWMQHW 915


>gi|24215966|ref|NP_713447.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Leptospira interrogans serovar Lai str. 56601]
 gi|24197184|gb|AAN50465.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 1035

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C +  C  VCPV    +  E    +  + C+    C   CP    + +     
Sbjct: 860 CQQCDNAPCETVCPVLATVHSSEGINDMVYNRCVGTRYCSNNCPYKVRRFNWMQHW 915


>gi|317480172|ref|ZP_07939282.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316903719|gb|EFV25563.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 373

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   +CI C    CV+ C  D  +        I   +C+ CG C   C  D      E  
Sbjct: 191 IDEASCIGCN--ICVKHCAHDAVHLNASRKAEIDYAKCVGCGQCVALCQHDGAVMGAEDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N + A     +   K 
Sbjct: 249 SER---LNYKIAEYALAVVMGKP 268


>gi|300703650|ref|YP_003745252.1| NADH-quinone oxidoreductase subunit i [Ralstonia solanacearum
           CFBP2957]
 gi|299071313|emb|CBJ42631.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           CFBP2957]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118


>gi|257064775|ref|YP_003144447.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792428|gb|ACV23098.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPV 52
           Y +   C  C++  C+EVCP            + I  + CI C  C   CP 
Sbjct: 53  YWLPTLCQQCENAPCIEVCPTGASQRDPVTGVVIIDRETCIGCKSCLTACPY 104


>gi|257790232|ref|YP_003180838.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474129|gb|ACV54449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C    C E CP     +  +   ++I  ++CI CG C   CP +A K D E
Sbjct: 66  SCNHCDSPICFEKCPQSAIIKDADTGLMSIDEEKCIGCGTCAIVCPYNAPKVDEE 120


>gi|225679000|gb|EEH17284.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 127 EERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 184


>gi|168184969|ref|ZP_02619633.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|237793330|ref|YP_002860882.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
 gi|182671973|gb|EDT83934.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|229262235|gb|ACQ53268.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
          Length = 387

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP   +       EG+     +  +CI C  C+  CP  AI
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVIDMIKKEGKKIPVWNMKKCIRCFCCQELCPKGAI 371


>gi|121533913|ref|ZP_01665739.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307424|gb|EAX48340.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++ CP            + +   +C  C +C   CP  A+
Sbjct: 60  CRHCQDAACLKACPSGAMRRSDEWQTVYVDQSQCRGCWMCVMVCPFGAV 108


>gi|94263620|ref|ZP_01287430.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93456040|gb|EAT06191.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 684

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  CK   C  +CP     F E +    I+   C  CG C   CP+ AI
Sbjct: 614 VDQQCCTGCK--ICQNICPYRAIGFDEEKQVAVINRVLCRGCGTCAAACPLTAI 665


>gi|90022045|ref|YP_527872.1| NADH:ubiquinone oxidoreductase subunit RnfB [Saccharophagus
           degradans 2-40]
 gi|89951645|gb|ABD81660.1| electron transport complex, RnfABCDGE type, B subunit
           [Saccharophagus degradans 2-40]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I  
Sbjct: 115 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCIDM 169


>gi|83591663|ref|YP_425415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83574577|gb|ABC21128.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 176

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C+  CP        + + ++   C+ C  C   CP  A++
Sbjct: 59  CHHCDDAPCLNACPNGAIVYSHDSVQVNQARCMGCKNCVMACPFGAMQ 106


>gi|15806869|ref|NP_295592.1| polyferredoxin [Deinococcus radiodurans R1]
 gi|6459648|gb|AAF11421.1|AE002026_9 polyferredoxin, putative [Deinococcus radiodurans R1]
          Length = 334

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV ++CI C    C  VCP          EG   L +    C  C  C   CP  AI 
Sbjct: 256 VVDDSCIDC--PVCANVCPTQAITRNLQPEGGVRLLLDLSACTGCMACLRSCPPQAIH 311



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 11 LCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C    CV+ CP +      G   + I P+ C  CG+C   CP  A++ D
Sbjct: 33 GC--AVCVDACPHEAVTVNAGGYAVEIDPERCTGCGLCVQSCPSGALEYD 80


>gi|121998536|ref|YP_001003323.1| NADH dehydrogenase subunit I [Halorhodospira halophila SL1]
 gi|156633521|sp|A1WXV9|NUOI_HALHL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|121589941|gb|ABM62521.1| NADH dehydrogenase subunit I [Halorhodospira halophila SL1]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP        +             I   +CI CG CE  CPVD+I
Sbjct: 61  EERCIACKL--CEAVCPALAITIDSHQRADGTRRTTRYDIDMFKCIYCGFCEESCPVDSI 118


>gi|107023264|ref|YP_621591.1| ferredoxin [Burkholderia cenocepacia AU 1054]
 gi|116690347|ref|YP_835970.1| ferredoxin [Burkholderia cenocepacia HI2424]
 gi|105893453|gb|ABF76618.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116648436|gb|ABK09077.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia HI2424]
          Length = 342

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C P CPVD I  
Sbjct: 117 AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCIPPCPVDCIAM 171


>gi|309274404|gb|ADO63826.1| putative chlorate reductase ClrB [Pseudomonas chloritidismutans]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C+  C  +  Y+   +  + +  + C     C   CP   I  + 
Sbjct: 133 CNHCANPACLAACSRNAIYKRQEDGIVLVDQERCRGYRYCVNACPYKKIYFNE 185


>gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 633

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C+   C + CP +    E +    +   +CI CG+C   C  DAI
Sbjct: 580 IDAEACTGCR--SCAKKCPQEAIAGEKKQPHKLDQAKCIKCGICYDACKFDAI 630


>gi|168207991|ref|ZP_02633996.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170660717|gb|EDT13400.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP +      N   I  ++C  CG+C  +CP  AI 
Sbjct: 219 CIGCKL--CEKNCPSEAIRIENNLAIIDYEKCTSCGICVSKCPKKAIN 264


>gi|168181125|ref|ZP_02615789.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182668040|gb|EDT80019.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 387

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP   +       EG+     +  +CI C  C+  CP  AI
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVIDMIKKEGKKIPVWNMKKCIRCFCCQELCPKGAI 371


>gi|159905359|ref|YP_001549021.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159886852|gb|ABX01789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 658

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV  + C  C    C   CP++   E +                      I  D CIDCG
Sbjct: 240 YVDDDTCTGC--GACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKDHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C  +A++ D +P    
Sbjct: 298 LCAKVCCAEAVRYDQKPQELK 318



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAI---HPDECIDCGVCEPECPVDAIK 56
             V  E C  CK   C  +CP +   YE ++   +       C  CG C   CP  A++
Sbjct: 577 ATVNEEVCGGCK--VCALMCPYNAITYEEKDGHLVAITDDVACKGCGACAAACPSGAMQ 633


>gi|163800923|ref|ZP_02194823.1| iron-sulfur cluster-binding protein [Vibrio sp. AND4]
 gi|159175272|gb|EDP60069.1| iron-sulfur cluster-binding protein [Vibrio sp. AND4]
          Length = 553

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 10  ILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL- 63
             C    CV+ CP          +  + + I+P  C   G C   CP +AI         
Sbjct: 184 KGCD--RCVDACPAGALSSQGSDKIGHRIEINPYLCQGVGTCSTACPTEAIHYALPNPQD 241

Query: 64  -ELWLK 68
            + +++
Sbjct: 242 TQKFIE 247



 Score = 38.0 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
           C LC    CV VCP    +       L     +CI CG+CE  CP +
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGESPSLKFIEQDCIQCGLCEKACPEN 464


>gi|113867078|ref|YP_725567.1| NADH dehydrogenase subunit I [Ralstonia eutropha H16]
 gi|194289167|ref|YP_002005074.1| NADH dehydrogenase subunit i [Cupriavidus taiwanensis LMG 19424]
 gi|123033156|sp|Q0KCS2|NUOI_RALEH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737389|sp|B3R3X5|NUOI_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|113525854|emb|CAJ92199.1| NADH dehydrogenase chain I [Ralstonia eutropha H16]
 gi|193223002|emb|CAQ69007.1| NADH:ubiquinone oxidoreductase complex I, chain I [Cupriavidus
           taiwanensis LMG 19424]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPALAITIESDARADGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118


>gi|283853443|ref|ZP_06370687.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio sp. FW1012B]
 gi|283571163|gb|EFC19179.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio sp. FW1012B]
          Length = 776

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-----ENFLAIHPDECIDCGVCEPECPV 52
            C  C    C  +CP            E  +   P++CI CG C   CP 
Sbjct: 717 ACRDC--GLCETICPTGAISRRQGEGKEFEMVSDPEKCIGCGFCGNACPC 764


>gi|218134605|ref|ZP_03463409.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989990|gb|EEC56001.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC
           43243]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 3   YVVTENCILCKHTDCVEVCP------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C    CV+ CP      V+    G    +I  + C+ CG C   CPV A+K
Sbjct: 156 YHITDACIGC--GTCVQHCPQSCISCVEDAETGNTHFSIRQEHCLHCGACYEHCPVGAVK 213

Query: 57  PDTEP 61
                
Sbjct: 214 RYESE 218


>gi|196249183|ref|ZP_03147882.1| nitrate reductase, beta subunit [Geobacillus sp. G11MC16]
 gi|196211412|gb|EDY06172.1| nitrate reductase, beta subunit [Geobacillus sp. G11MC16]
          Length = 489

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCLNPSCVSSCPSGAMYKRDEDGIVLVDQNACRAWRYCVTSCPYKKVYFNWQTNKAE 239


>gi|116750707|ref|YP_847394.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699771|gb|ABK18959.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 174

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C  C+   CV VCP     +   +  + + P  C+ C  C   CP  A + 
Sbjct: 58  PCFHCEVPWCVPVCPTGAMRKRPFDGIVYVEPSLCVGCKRCISACPWGAPQW 109


>gi|302392642|ref|YP_003828462.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302204719|gb|ADL13397.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 585

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V ++ C  C    C+++ CP     EGE    I+   C  CGVC   C  DAI  D
Sbjct: 529 VDSDKCQDC--GQCLDIGCPALVKEEGEAK--INDYLCTGCGVCTEICVFDAIVRD 580


>gi|317153423|ref|YP_004121471.1| NIL domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943674|gb|ADU62725.1| NIL domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 146

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +   E+CI C    C  +CP D      G   +    D+C  CG+C   CPV A+  D +
Sbjct: 85  FRNEESCIHC--GVCTAMCPTDALLLDPGTRLVVFDVDKCSACGMCTRVCPVKAMTLDLK 142

Query: 61  PG 62
             
Sbjct: 143 DD 144


>gi|17221315|emb|CAA05050.2| benzylsuccinate synthase activating enzyme [Thauera aromatica]
          Length = 331

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDA 54
           Y   + C+ C    CV VCP +        +G   + I    C  C  C   C  +A
Sbjct: 49  YFYPDRCVGC--GRCVAVCPAETSRLVRNSDGRTIVQIDRTNCQRCMRCVAACLTEA 103


>gi|323698801|ref|ZP_08110713.1| response regulator receiver protein [Desulfovibrio sp. ND132]
 gi|323458733|gb|EGB14598.1| response regulator receiver protein [Desulfovibrio desulfuricans
           ND132]
          Length = 1142

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 26/84 (30%), Gaps = 20/84 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF------------------YEGENFLAIHPDECIDC 43
           T +    CI C    C EVCPV                     Y   N   +  D CI C
Sbjct: 110 TLIDPAKCISC--GRCAEVCPVRVPSEFNAGLTERTAVHLPVPYAIPNHYVLDLDNCIRC 167

Query: 44  GVCEPECPVDAIKPDTEPGLELWL 67
             C   CP  AI    E   +  +
Sbjct: 168 WKCHEACPTGAIDFKFEDRRDFHI 191



 Score = 41.1 bits (95), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
            C LC    CV  CP         E  + +    C  CG C   CP  A
Sbjct: 1074 CSLC--QACVSACPYGARAVDTTEEKIIVDEILCQGCGACAAVCPNSA 1119


>gi|240171952|ref|ZP_04750611.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium kansasii
          ATCC 12478]
          Length = 527

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESL 87
           L I P  C+DCG C   CPV AI PD+  E     +++IN+ Y  + P     K   
Sbjct: 1  MLYIDPVACVDCGACVSACPVGAIAPDSRLESRQLPFVEINASYYPKRP--ADAKLPP 56


>gi|225571973|ref|ZP_03780837.1| hypothetical protein RUMHYD_00267 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040506|gb|EEG50752.1| hypothetical protein RUMHYD_00267 [Blautia hydrogenotrophica DSM
           10507]
          Length = 742

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDA-IKP 57
           ++ E C  C    C E+CP D        EG  + ++  ++CI CG+C+  C   A   P
Sbjct: 378 ILKEECYGCY--ACKEICPKDAISMETDEEGFYYPSVDHEKCISCGLCQKVCIRLAEHFP 435

Query: 58  DTEPGLELWLKINSEYATQ 76
                 +++  +N + + +
Sbjct: 436 QEILQPKVYGAVNKDMSAR 454


>gi|224367324|ref|YP_002601487.1| Fdx4 [Desulfobacterium autotrophicum HRM2]
 gi|223690040|gb|ACN13323.1| Fdx4 [Desulfobacterium autotrophicum HRM2]
          Length = 143

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
          M++++ E CI C    C ++CP      E +    I  D CI C  C   CP
Sbjct: 1  MSFIINETCIGC--GACTKICPSGAITGEKQELHTIDTDLCIQCRACGTVCP 50



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C  T CVE CP       +             +   CI CG CE ECPV AI     
Sbjct: 80  CMAC--TICVEACPTGAICLDDPTSKDPHAYPALANEKRCIGCGFCEKECPVGAITMAAP 137


>gi|157962175|ref|YP_001502209.1| electron transport complex protein RnfB [Shewanella pealeana ATCC
           700345]
 gi|189043389|sp|A8H537|RNFB_SHEPA RecName: Full=Electron transport complex protein rnfB
 gi|157847175|gb|ABV87674.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDM 161


>gi|73668208|ref|YP_304223.1| glutamate synthase (NADPH) GltB2 subunit [Methanosarcina barkeri
          str. Fusaro]
 gi|72395370|gb|AAZ69643.1| glutamate synthase (NADPH) GltB2 subunit [Methanosarcina barkeri
          str. Fusaro]
          Length = 503

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  + C+ C    C+E C    +    + + I   +C  C  C   CP DAI
Sbjct: 14 IDRDQCMDC--GRCIENCSYGVYRREGDKILIESRKCTGCLRCVAMCPRDAI 63


>gi|333005912|gb|EGK25428.1| hypothetical protein SFK272_2375 [Shigella flexneri K-272]
 gi|333018844|gb|EGK38137.1| hypothetical protein SFK227_1915 [Shigella flexneri K-227]
          Length = 98

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKPQCIGCSYCIGACPY 98


>gi|299136100|ref|ZP_07029284.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
 gi|298602224|gb|EFI58378.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
          Length = 1070

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPEC 50
           C  C++  C +VCPV         L  +  + C+    C   C
Sbjct: 902 CQHCENAGCEQVCPVGATVHTPEGLNTMVYNRCVGTRYCSNNC 944


>gi|296130543|ref|YP_003637793.1| NADH-quinone oxidoreductase, chain I [Cellulomonas flavigena DSM
           20109]
 gi|296022358|gb|ADG75594.1| NADH-quinone oxidoreductase, chain I [Cellulomonas flavigena DSM
           20109]
          Length = 247

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 78  EKCIGCEL--CAWACPADAIYVEADDNTPDAQYSPGERYGRVYQINYLRCIFCGLCIEAC 135

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 136 PTRALTM 142


>gi|262043980|ref|ZP_06017063.1| hydrogenase-4 component A [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259038658|gb|EEW39846.1| hydrogenase-4 component A [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 173

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|255528550|ref|ZP_05395328.1| protein of unknown function DUF362 [Clostridium carboxidivorans P7]
 gi|296187878|ref|ZP_06856271.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255507759|gb|EET84221.1| protein of unknown function DUF362 [Clostridium carboxidivorans P7]
 gi|296047499|gb|EFG86940.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 387

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V+ E CI C    C +VCP           EG+ +   +  +CI C  C+  CP  AI
Sbjct: 314 PVVIKEKCIGC--ARCSQVCPEKPKVIKIIEKEGKKYPVWNMKQCIRCFCCQELCPCGAI 371


>gi|154490813|ref|ZP_02030754.1| hypothetical protein PARMER_00730 [Parabacteroides merdae ATCC
           43184]
 gi|154088561|gb|EDN87605.1| hypothetical protein PARMER_00730 [Parabacteroides merdae ATCC
           43184]
          Length = 373

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  E+C  C    CV+ C  D  +    +   I   +C+ CG C   C  D         
Sbjct: 191 IDIESCKGCN--ICVKHCRHDAIHLNASHKAEIDYGKCVGCGQCVALCQYDGAVMGEGDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N + A     + + K 
Sbjct: 249 SER---LNYKIAEYTKAVLSGKP 268


>gi|134298565|ref|YP_001112061.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051265|gb|ABO49236.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 196

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV + C  C    CV  CP      GE    I   +C++CG C   CP  AI 
Sbjct: 80  VVGDGCTAC--GLCVSACPDQAIVLGEEGPCIVESQCLNCGKCAKICPTGAIY 130


>gi|57642012|ref|YP_184490.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160336|dbj|BAD86266.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
          Length = 166

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
          NC  C+   C+EVCP +  Y   +   +  P +CI C +C   CP    + D+
Sbjct: 47 NCRHCEKAPCLEVCPTNALYRDGDGAVLLAPQKCIGCLMCGIVCPFGIPELDS 99


>gi|304315502|ref|YP_003850649.1| CoB-CoM heterodisulfide reductase iron-sulfur, subunit A
           [Methanothermobacter marburgensis str. Marburg]
 gi|41017088|sp|Q50756|HDRA_METTM RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
 gi|728612|emb|CAA57039.1| heterodisulfide reductase [Methanothermobacter thermautotrophicus]
 gi|302588961|gb|ADL59336.1| CoB-CoM heterodisulfide reductase iron-sulfur, subunit A
           [Methanothermobacter marburgensis str. Marburg]
          Length = 659

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           Y+  E C  C    CVEVCP++     +  +                   I  D CI+C 
Sbjct: 248 YIDEELCTGC--GSCVEVCPIEMPNYFDEGIGMTKAVYIPFPQAVPLCATIDKDYCIECM 305

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C+  C   A+K D EP    
Sbjct: 306 LCDEVCERGAVKHDQEPEEIE 326



 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
               ++ C  C+   C+E+CP       E    ++   C  CG C   CP  A+      
Sbjct: 584 AVTDSDVCGGCE--VCIELCPFGAISIEEGHANVNVALCKGCGTCVAACPSGAMDQQHFK 641

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 642 TEQIMAQIEAAL 653


>gi|330506697|ref|YP_004383125.1| putative methanogenesis marker 16 metalloprotein [Methanosaeta
           concilii GP-6]
 gi|328927505|gb|AEB67307.1| putative methanogenesis marker 16 metalloprotein [Methanosaeta
           concilii GP-6]
          Length = 421

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
              E C  C        CP++     +  +     +C +CG+C  +C   A +
Sbjct: 319 FDPERCKGCTRCTAAPACPMNAISIEDGRVLRDKTKCFNCGLCVSQCSGGAFQ 371


>gi|330446484|ref|ZP_08310136.1| electron transport complex, RnfABCDGE type, B subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490675|dbj|GAA04633.1| electron transport complex, RnfABCDGE type, B subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 194

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVSPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
           +  P    W ++N 
Sbjct: 165 EETPDNWKW-QLNR 177


>gi|323164439|gb|EFZ50241.1| respiratory nitrate reductase 2 beta chain domain protein [Shigella
           sonnei 53G]
          Length = 298

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP  
Sbjct: 175 CEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYK 221


>gi|302339991|ref|YP_003805197.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637176|gb|ADK82603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 292

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           +    CI CK   C+  CPVD F   +  + +      CI C  C   CP  AI  +   
Sbjct: 211 IDAAKCIKCKK--CISACPVDMFTYADGEIVMHRDNSSCILCAECFHTCPAGAI--EHPY 266

Query: 62  GLELWLKINSEYAT 75
                 ++N  +A 
Sbjct: 267 IEMGRKRLNDGFAK 280


>gi|295400325|ref|ZP_06810304.1| nitrate reductase, beta subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294977600|gb|EFG53199.1| nitrate reductase, beta subunit [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 490

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCLNPSCVSSCPSGAMYKRDEDGIVLVDQNACRAWRYCVTSCPYKKVYFNWQTNKAE 239


>gi|268326009|emb|CBH39597.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [uncultured archaeon]
          Length = 595

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 2   TYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + V ENC  C+   CVE  CP   F E    +      C  CG+C   CP  AI
Sbjct: 542 PFTVNENCTGCRK--CVEFGCPAIEFDEDSARI---NALCTGCGICAQICPNKAI 591


>gi|312111149|ref|YP_003989465.1| nitrate reductase subunit beta [Geobacillus sp. Y4.1MC1]
 gi|311216250|gb|ADP74854.1| nitrate reductase, beta subunit [Geobacillus sp. Y4.1MC1]
          Length = 490

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCLNPSCVSSCPSGAMYKRDEDGIVLVDQNACRAWRYCVTSCPYKKVYFNWQTNKAE 239


>gi|257060127|ref|YP_003138015.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|256590293|gb|ACV01180.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 534

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC 43
          M+Y +T++C  C  T C   CP D         +I    C +C
Sbjct: 1  MSYTITDSCPNC--TSCQIDCPTDAIQLHNGAYSIDEKLCNNC 41


>gi|218247058|ref|YP_002372429.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|218167536|gb|ACK66273.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
          Length = 534

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC 43
          M+Y +T++C  C  T C   CP D         +I    C +C
Sbjct: 1  MSYTITDSCPNC--TSCQIDCPTDAIQLHNGAYSIDEKLCNNC 41


>gi|138895369|ref|YP_001125822.1| nitrate reductase subunit beta [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266882|gb|ABO67077.1| Nitrate reductase beta subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 489

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCLNPSCVSSCPSGAMYKRDEDGIVLVDQNACRAWRYCVTSCPYKKVYFNWQTNKAE 239


>gi|160878703|ref|YP_001557671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium phytofermentans ISDg]
 gi|160427369|gb|ABX40932.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           phytofermentans ISDg]
          Length = 697

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 9   CILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPEC---PVDAIKPDTE 60
           C  C    C EVCP          EG  +  ++ ++CI CG+CE  C       I     
Sbjct: 318 CCGCY--ACKEVCPTGAIQMLMDREGFYYPHVNKEKCIHCGLCERVCVKKENSQIVSYEA 375

Query: 61  PGLELWLKINSE 72
              +++  IN +
Sbjct: 376 DYPKVYSAINKD 387


>gi|332978350|gb|EGK15075.1| electron transport complex [Psychrobacter sp. 1501(2011)]
          Length = 275

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  ++CI C  T C+  CPVD     G++   I  D C  C +C P CPVD I     
Sbjct: 108 AVIREDDCIGC--TKCIPACPVDAIVGTGKHMHTIISDLCTGCELCLPPCPVDCIDLIEV 165

Query: 61  PGL 63
           P  
Sbjct: 166 PRD 168


>gi|332561493|ref|ZP_08415806.1| pyruvate formate lyase activating enzyme [Rhodobacter sphaeroides
           WS8N]
 gi|332273995|gb|EGJ19313.1| pyruvate formate lyase activating enzyme [Rhodobacter sphaeroides
           WS8N]
          Length = 305

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C+ VC V               +CI CG C   CP +A+
Sbjct: 59  EACIGC--GRCIPVCSVQALSGDNPGFV-DRSKCIRCGECTKVCPTEAL 104


>gi|290968031|ref|ZP_06559580.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290781937|gb|EFD94516.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 593

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + CI CK   C+   CP   +        I   +C+ C VC   CPV AI  + 
Sbjct: 537 VDRDTCIGCK--TCLRTGCPALRYETDSRKAHISQADCVGCTVCLQVCPVQAIAAEE 591


>gi|255527517|ref|ZP_05394385.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
 gi|255508787|gb|EET85159.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
          Length = 426

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE-- 60
          +  E C  C+   C EVCPVD     +     I  D+C+ CG C   C       D    
Sbjct: 10 IDEELCTGCR--RCSEVCPVDAIEGKDGVPQHIDTDKCVMCGQCVQVCKGYYSVYDEPAT 67

Query: 61 PGLELWLK 68
          P  + +  
Sbjct: 68 PLSKKYYD 75


>gi|255323638|ref|ZP_05364768.1| 4Fe-4S binding domain protein [Campylobacter showae RM3277]
 gi|255299352|gb|EET78639.1| 4Fe-4S binding domain protein [Campylobacter showae RM3277]
          Length = 227

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   CV VCP    ++ E      ++ D+CI C  C   CP D    + E     
Sbjct: 97  SCQQCEDAPCVNVCPTKACHKDEKTGITTMNTDDCIACKYCIVACPYDVRFINHETRAAE 156


>gi|207725274|ref|YP_002255670.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum MolK2]
 gi|206590508|emb|CAQ37470.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum MolK2]
          Length = 265

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E+CI C  T C++ CPVD           +  D C  C +C   CPVD I  
Sbjct: 80  AVIDPEHCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDM 134


>gi|115380469|ref|ZP_01467451.1| hypothetical protein STIAU_8173 [Stigmatella aurantiaca DW4/3-1]
 gi|115362524|gb|EAU61777.1| hypothetical protein STIAU_8173 [Stigmatella aurantiaca DW4/3-1]
          Length = 424

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C+   C  VCPV+   +  E    +  + CI    C   CP  
Sbjct: 246 CVHCEKAPCEYVCPVNATVHSDEGLNDMVYNRCIGTRYCANNCPYK 291


>gi|55378121|ref|YP_135971.1| formate dehydrogenase-O iron-sulfur subunit [Haloarcula marismortui
           ATCC 43049]
 gi|55230846|gb|AAV46265.1| formate dehydrogenase-O iron-sulfur subunit [Haloarcula marismortui
           ATCC 43049]
          Length = 220

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V   C  C +  CV VCP D    +   F+ +  D CI C  C   CP  A +   E 
Sbjct: 85  VPMQCYHCSNAPCVSVCPTDSLISKENGFVRVRDDLCIGCQYCLSACPFGAPQFPDED 142


>gi|330835304|ref|YP_004410032.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567443|gb|AEB95548.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 646

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C+  +CV  CPV       NF+         C+  G C   CP   I          
Sbjct: 583 CVKCESKECVNACPVGNTDLPGNFIKRGEFKSMRCVGIGDCAEACPYGNITFYDVRSWLK 642


>gi|325290293|ref|YP_004266474.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|325290296|ref|YP_004266477.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965694|gb|ADY56473.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965697|gb|ADY56476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 268

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            V   C+ C+   C   C    F +      I     C+ C  C   CP D +  + +
Sbjct: 83  FVKTQCMHCEEPVCASACFSKAFQKLPQGPVIYDQSLCVGCRYCMMACPFDVLTYEWK 140


>gi|325972702|ref|YP_004248893.1| PAS/PAC sensor protein [Spirochaeta sp. Buddy]
 gi|324027940|gb|ADY14699.1| putative PAS/PAC sensor protein [Spirochaeta sp. Buddy]
          Length = 603

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CV  CPV      +    +  D CI CG C   CP  A
Sbjct: 12 CRDCYK--CVRGCPVKAIQVKDGSAVVVKDRCIYCGHCVDICPSHA 55



 Score = 34.6 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI 35
            VV + CI C    CV++CP        +   +
Sbjct: 34 AVVVKDRCIYC--GHCVDICPSHAKKIRNDLARV 65


>gi|310659325|ref|YP_003937046.1| cobyrinic acid a,c-diamide synthase [Clostridium sticklandii DSM
           519]
 gi|308826103|emb|CBH22141.1| Cobyrinic acid a,c-diamide synthase [Clostridium sticklandii]
          Length = 295

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + +E CI C    C+E C  D   E E+   ++P  C  C +CE  CPV+AI  + + 
Sbjct: 62  AVIDSEKCINC--GLCMEKCRFDAI-ENESDYKVNPFACEGCSLCEYVCPVNAIIMNKDV 118

Query: 62  GLELWL 67
             EL L
Sbjct: 119 AGELML 124



 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 25 CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            Y G N   I  ++CI+CG+C  +C  DAI+ +++  +  +
Sbjct: 54 SNYYGMNKAVIDSEKCINCGLCMEKCRFDAIENESDYKVNPF 95


>gi|206895585|ref|YP_002247843.1| 4Fe-4S binding domain protein [Coprothermobacter proteolyticus
          DSM 5265]
 gi|206738202|gb|ACI17280.1| 4Fe-4S binding domain protein [Coprothermobacter proteolyticus
          DSM 5265]
          Length = 128

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
          C+ C    C E CP                 +CI C  C P C V AI  D
Sbjct: 49 CVGCSDPACAEACPTQALTPRPGGGVLFDAKKCIGCEKCVPACIVGAIAMD 99


>gi|198273884|ref|ZP_03206416.1| hypothetical protein BACPLE_00018 [Bacteroides plebeius DSM
          17135]
 gi|198272962|gb|EDY97231.1| hypothetical protein BACPLE_00018 [Bacteroides plebeius DSM
          17135]
          Length = 399

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C    C + CP       E    + P  C  CG C   CP +A
Sbjct: 14 DACTQC--GICADSCPFGAIQFNEY-PEVDPYSCRLCGTCVQACPAEA 58


>gi|54309722|ref|YP_130742.1| electron transport complex protein RnfB [Photobacterium profundum
           SS9]
 gi|46914160|emb|CAG20940.1| Putative RnfB-related protein [Photobacterium profundum SS9]
          Length = 192

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+    
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIEMIPV 163

Query: 58  DTEPGLELW 66
              P    W
Sbjct: 164 KDTPESWKW 172


>gi|238796066|ref|ZP_04639577.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia mollaretii ATCC
           43969]
 gi|238720011|gb|EEQ11816.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia mollaretii ATCC
           43969]
          Length = 173

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C   CP      GE+ + +    CI C  C   CP  A+ 
Sbjct: 58  CHQCEDAPCENSCPNGAIVTGEHGVQVLASRCIGCKTCMLVCPFGAMN 105


>gi|238760425|ref|ZP_04621564.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC
           35236]
 gi|238701377|gb|EEP93955.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC
           35236]
          Length = 207

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIEM 164


>gi|189424228|ref|YP_001951405.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189420487|gb|ACD94885.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 185

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +E C  C +  CV  CP    Y+      + +    C+ C  C   CP DA   D
Sbjct: 55  SELCNHCDNPPCVYNCPTRASYKSRLSGLVLLDKKRCVGCKACVAACPYDARYID 109


>gi|46580698|ref|YP_011506.1| iron-sulfur protein CooF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602010|ref|YP_966410.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46450117|gb|AAS96766.1| iron-sulfur protein CooF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562239|gb|ABM27983.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311234417|gb|ADP87271.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris RCH1]
          Length = 173

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  CK   C  VCP     + +  + +    C  C +C   CP  AI
Sbjct: 63  CRQCKDAPCARVCPTRALVQDDGVVTMRAQFCAACRLCIMACPYGAI 109


>gi|332798543|ref|YP_004460042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696278|gb|AEE90735.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
          Length = 139

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C+LC +  C+  CP     + E    + ++   C  CG+CE  CP  AI+  T P +
Sbjct: 55  EQCMLCTNPRCIAACPTGALSKDEESGIIKVNKMACTGCGLCEDACPFGAIELHTFPTM 113


>gi|332702842|ref|ZP_08422930.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552991|gb|EGJ50035.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 698

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+      CV+VCP D  + G +N   ++P EC  CG C   CP   I
Sbjct: 135 PEGCLG--LGSCVKVCPFDAIHMGPDNLPHVNPAECRACGKCVAVCPRGVI 183


>gi|317489693|ref|ZP_07948197.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325830228|ref|ZP_08163685.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|316911287|gb|EFV32892.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325487695|gb|EGC90133.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C    C E CP     +  +   ++I  ++CI CG C   CP +A K D E
Sbjct: 66  SCNHCDSPVCFEKCPQSAIIKDADTGLMSIDEEKCIGCGTCAIVCPYNAPKVDEE 120


>gi|300854979|ref|YP_003779963.1| putative Fe-S cluster protein [Clostridium ljungdahlii DSM 13528]
 gi|300435094|gb|ADK14861.1| predicted Fe-S cluster protein [Clostridium ljungdahlii DSM 13528]
          Length = 344

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL-W 66
            C  C    C + CP +          I+ D+C+ C  C   CP  AI       +   +
Sbjct: 190 KCKGCS--ACAKKCPQNAI-IVNRKARINKDKCVGCASCMAICPQGAIYHSWLGSMTKSF 246

Query: 67  LKINSEYA 74
            +  +EYA
Sbjct: 247 NERLAEYA 254


>gi|28212066|ref|NP_783010.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88]
 gi|28204509|gb|AAO36947.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88]
          Length = 316

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            CI C    CV VC              +     +CI CG C  +CP  A         E
Sbjct: 171 RCIGC--QACVNVCKKKSTGALSFENYKVVRDHSKCIGCGECINKCPTSA----WSRSEE 224

Query: 65  LWLKI 69
            + K+
Sbjct: 225 KYFKL 229


>gi|325845523|ref|ZP_08168812.1| sulfite reductase, subunit C [Turicibacter sp. HGF1]
 gi|325488427|gb|EGC90847.1| sulfite reductase, subunit C [Turicibacter sp. HGF1]
          Length = 321

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           M     + CI C    CV  C              +     +CI CG C  +CP  A
Sbjct: 164 MPQYDKDRCISC--GACVRACKKKATGALSAENFKVLRDGSKCIGCGECVIQCPTAA 218


>gi|322806473|emb|CBZ04042.1| mind superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum H04402 065]
          Length = 281

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + CI C  T+C  VC  D     +    I P  C  CG C   CP +AIK + E   
Sbjct: 62  IDEDICIKC--TECELVCKFDAIENFK----IDPFLCEGCGACTLICPQNAIKLEDEKTA 115

Query: 64  ELWL 67
           + ++
Sbjct: 116 KTFI 119


>gi|307942127|ref|ZP_07657478.1| NADH-quinone oxidoreductase subunit i 2 [Roseibium sp. TrichSKD4]
 gi|307774413|gb|EFO33623.1| NADH-quinone oxidoreductase subunit i 2 [Roseibium sp. TrichSKD4]
          Length = 162

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K+  L +  + +  
Sbjct: 117 IV--EGPNFEFATETREEL------YYNKERLLANGDRWERE 150


>gi|317152898|ref|YP_004120946.1| iron-sulfur-binding protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943149|gb|ADU62200.1| iron-sulfur binding protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 149

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ CK  +CV  CP    Y+ E+ L  ++ D C  C  C   CP D
Sbjct: 58  QPCMHCKKPECVPACPTGAMYQREDGLVLVNMDLCDGCQSCIAACPWD 105


>gi|257783945|ref|YP_003179162.1| (Formate-C-acetyltransferase)-activating enzyme [Atopobium parvulum
           DSM 20469]
 gi|257472452|gb|ACV50571.1| (Formate-C-acetyltransferase)-activating enzyme [Atopobium parvulum
           DSM 20469]
          Length = 294

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           CI C    CV+ CP          +      CI+C  C   C   
Sbjct: 61  CISC--QACVKPCPAHALSMANGKVVWDNSICINCDNCIKVCQHK 103


>gi|218885428|ref|YP_002434749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756382|gb|ACL07281.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 652

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C+  CP          GE    +    C  CG+C   CP  AI+       
Sbjct: 583 RCVGC--GKCITTCPYGAIEWMELRGEMKARVIETVCQGCGICTVTCPQGAIQLQHFTDN 640

Query: 64  ELWLKINS 71
           ++  ++N+
Sbjct: 641 QILAEVNA 648



 Score = 39.6 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 25/85 (29%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECID 42
           TYV  E C  C    C+E CP                               I P  C  
Sbjct: 235 TYVDWELCTGC--GLCMEKCPSRKSPDAFNEHVGVTTSINIPFPQAIPKKAIIDPTSCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AI+ D E  
Sbjct: 293 FVKGKCGVCAKVCPTGAIRYDMEDQ 317


>gi|168179907|ref|ZP_02614571.1| iron-sulfur binding protein [Clostridium botulinum NCTC 2916]
 gi|226949492|ref|YP_002804583.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182669235|gb|EDT81211.1| iron-sulfur binding protein [Clostridium botulinum NCTC 2916]
 gi|226844018|gb|ACO86684.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 281

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + CI C  T+C  VC  D     +    I P  C  CG C   CP +AIK + E   
Sbjct: 62  IDEDICIKC--TECELVCKFDAIENFK----IDPFLCEGCGACTLICPQNAIKLEDEKTA 115

Query: 64  ELWL 67
           + ++
Sbjct: 116 KTFI 119


>gi|146329455|ref|YP_001209464.1| electron transport complex protein, B subunit [Dichelobacter
           nodosus VCS1703A]
 gi|146232925|gb|ABQ13903.1| electron transport complex protein, B subunit [Dichelobacter
           nodosus VCS1703A]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++V + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I  
Sbjct: 108 AWIVEDWCIGC--TRCIQACPVDAIVGSTQRMHTVLSAECTGCELCIAPCPVDCIVM 162


>gi|119473031|ref|ZP_01614853.1| electron transport complex protein RnfB [Alteromonadales bacterium
           TW-7]
 gi|119444609|gb|EAW25921.1| electron transport complex protein RnfB [Alteromonadales bacterium
           TW-7]
          Length = 184

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD           +  DEC  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCIDM 161


>gi|308271106|emb|CBX27716.1| Ferredoxin-1 [uncultured Desulfobacterium sp.]
          Length = 62

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 1  MTY---VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
          M Y   V TE C+ C   +CV VCPVD +   E   + ++ +ECI C  C   C   AI
Sbjct: 1  MAYKPEVDTEKCVGC--GECVNVCPVDVYELQEEKAVVVNEEECIGCESCVEVCEQGAI 57


>gi|227826744|ref|YP_002828523.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|229583908|ref|YP_002842409.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238618839|ref|YP_002913664.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
 gi|227458539|gb|ACP37225.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|228018957|gb|ACP54364.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238379908|gb|ACR40996.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
          Length = 363

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV       +
Sbjct: 263 PTVDFDTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVD 320

Query: 61  P--------GLELWLKINSEYATQWPNITTKKE 85
                      E+W +  ++Y     N+   ++
Sbjct: 321 ESMFTDYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|182417722|ref|ZP_02949040.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237668967|ref|ZP_04528951.1| NADH dehydrogenase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378446|gb|EDT75977.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237657315|gb|EEP54871.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 656

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C   CPV     E +    I  ++CI CG C  ECP +A+
Sbjct: 603 INKDKCRGCSK--CSRNCPVQAIQGEIKKTFEIDKEKCIKCGQCIIECPFNAV 653


>gi|91772644|ref|YP_565336.1| cobyrinic acid a,c-diamide synthase [Methanococcoides burtonii DSM
           6242]
 gi|91711659|gb|ABE51586.1| MinD /ParA family ATPase [Methanococcoides burtonii DSM 6242]
          Length = 290

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y+    CI C    C E C  D   +    + +   EC  CGVC   CP  AI      
Sbjct: 61  AYIDDSLCIQC--GLCKEACRFDAITDN---IKVDSFECEGCGVCAHICPEGAITLVERK 115

Query: 62  GLELWL 67
             E +L
Sbjct: 116 AGEAYL 121


>gi|45358387|ref|NP_987944.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
 gi|44921145|emb|CAF30380.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
          Length = 397

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VTE+C+ C    C+  CPV           +  D CI C +C   CP +AI 
Sbjct: 131 VTEDCVGC--GVCISECPVGALSIEGEKAVVDKDSCIYCSICAQTCPWNAIF 180



 Score = 34.6 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V ++ CI C   DC + CP D     E  +A+ P  C  CG+C+  CPVDAI+   E   
Sbjct: 198 VDSDLCIGC--GDCTDKCPRDLIVLNE-MVAVPPKGCPACGLCKAACPVDAIELVVEYAS 254

Query: 64  EL 65
             
Sbjct: 255 PK 256


>gi|307825404|ref|ZP_07655623.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacter tundripaludum SV96]
 gi|307733579|gb|EFO04437.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacter tundripaludum SV96]
          Length = 192

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +++ E+CI C    C+  CPVD      +    +   EC  C +C   CPVD I     
Sbjct: 82  AFIIEEDCIGCVK--CIADCPVDAIVGAAKLMHTVIASECTGCELCIAPCPVDCIIMQAA 139

Query: 61  PG 62
           P 
Sbjct: 140 PP 141


>gi|289423315|ref|ZP_06425123.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156246|gb|EFD04903.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 55

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV C  +G+   +I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIKDSCIAC--GACAAECPVSCISDGD-IYSIDASACIDCGSCAGVCPVDAPQPE 55


>gi|297527371|ref|YP_003669395.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297256287|gb|ADI32496.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 172

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    C+EVCP       E+    +   +CI C  C   CP    + D
Sbjct: 57  SCLHCSRAPCIEVCPTGAMTRDESGAVYVESMKCIGCMACLYACPFGIPELD 108


>gi|229583141|ref|YP_002841540.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
 gi|228013857|gb|ACP49618.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
          Length = 363

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV       +
Sbjct: 263 PTVDFDTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVD 320

Query: 61  P--------GLELWLKINSEYATQWPNITTKKE 85
                      E+W +  ++Y     N+   ++
Sbjct: 321 ESMFTDYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|78356256|ref|YP_387705.1| heterodisulfide reductase subunit A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218661|gb|ABB38010.1| heterodisulfide reductase, A subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 660

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T  C+ C    C   CP     E     G     +    C  CG+C   CP  AI+  
Sbjct: 579 VDTARCVGC--MKCAMTCPFGAVRETQDRAGNVKADVLETVCQGCGICTATCPHGAIQLQ 636

Query: 59  TEPGLELWLKINS 71
                ++  ++N+
Sbjct: 637 HFTDNQILAEVNA 649



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 26/84 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-------------------ENFLAIHPDECI- 41
           TYV    C  C    C+E CP    ++                        +I PD C  
Sbjct: 235 TYVDWSKCTGC--GLCMEKCPSKKSFDRFNEGVATTTAINIPFPQAIPKKASIDPDYCRK 292

Query: 42  ----DCGVCEPECPVDAIKPDTEP 61
                CGVCE  CP+  I  + + 
Sbjct: 293 LQGKKCGVCEKFCPMGCIDFEQQE 316


>gi|113461203|ref|YP_719272.1| electron transport complex protein RnfB [Haemophilus somnus 129PT]
 gi|112823246|gb|ABI25335.1| electron transport complex protein [Haemophilus somnus 129PT]
          Length = 196

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  D C  C +C   CP D I  
Sbjct: 106 AFIDEDMCIGC--TKCIQACPVDAIIGTNKAMHTIIADLCTGCELCVAPCPTDCISM 160



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           M  ++ + C  C+   CV  CP DC         I   
Sbjct: 135 MHTIIADLCTGCEL--CVAPCPTDCISMINVKQHIDNW 170


>gi|332296339|ref|YP_004438262.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
 gi|332179442|gb|AEE15131.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
          Length = 449

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C    C E CP +          +I   +CI CG C   CP  AI+  +
Sbjct: 43 KCVGCD--TCREQCPANAIRGELGVAHSIDIMKCITCGQCLINCPFGAIEQMS 93


>gi|315425186|dbj|BAJ46856.1| formate dehydrogenase-O iron-sulfur subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 336

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C    CV  CP    ++       +  D CI C  C   CP D  + + E
Sbjct: 123 SCMHCVEAPCVYGCPTTALWKHPEGPVEVRTDLCIGCRNCIETCPFDVPRTNPE 176



 Score = 33.8 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 7/52 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CI C++  C+E CP D          +         +C        I
Sbjct: 151 VRTDLCIGCRN--CIETCPFDVPRTNPELGVVEKCT-----LCADRITQKPI 195


>gi|310830102|ref|YP_003962459.1| Ferredoxin [Eubacterium limosum KIST612]
 gi|308741836|gb|ADO39496.1| Ferredoxin [Eubacterium limosum KIST612]
          Length = 56

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +T+ CI C    C + CPV+   EG     I    C DCG C  +CPV+AI P+ 
Sbjct: 1  MAYKITDECIAC--GSCADQCPVEAISEGS-IYEIDEALCTDCGACADQCPVEAIVPED 56


>gi|303247130|ref|ZP_07333405.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio fructosovorans JJ]
 gi|302491556|gb|EFL51441.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio fructosovorans JJ]
          Length = 674

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           +++  + CI C    C+++C        +      ++   C  CG C   CP  A +   
Sbjct: 582 SHINPDVCIGC--GICIKLCAYGAIDFDQRLGVAVVNEAMCKGCGACAGHCPSGAAQVRH 639

Query: 60  EPGLELWLKI 69
               EL+ +I
Sbjct: 640 FNQRELFAEI 649



 Score = 34.6 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 25/79 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECID-- 42
           Y+    C  C    C+E CP     E E  +                   I  + C+   
Sbjct: 238 YIDETKCTGC--GLCLEKCPTKVPSEFEEGIGIRRAIYRNSPQSVPNKPVIDTEHCLYFR 295

Query: 43  ---CGVCEPECPVDAIKPD 58
              C VCE  CP  A+  +
Sbjct: 296 KGKCRVCEKNCPSGAVDFE 314


>gi|299483516|gb|ADJ19597.1| putative Fe-S-cluster-containing hydrogenase component [Treponema
           primitia ZAS-2]
          Length = 181

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C++  C++ C        +  + ++  +CI C  C   CP  AI+
Sbjct: 63  CHHCENAPCLQSCLPGALERKDGSVVVNGKKCIGCRNCALACPFGAIQ 110


>gi|295094257|emb|CBK83348.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Coprococcus sp. ART55/1]
          Length = 597

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++E CI CK       CP     +G   +AI    C  CG+C   CPV AI
Sbjct: 543 ISEKCIQCKKCIREIGCPAIILKDG--KVAIDESLCTGCGLCSQICPVGAI 591


>gi|266625528|ref|ZP_06118463.1| putative pyruvate formate-lyase activating enzyme [Clostridium
          hathewayi DSM 13479]
 gi|288862567|gb|EFC94865.1| putative pyruvate formate-lyase activating enzyme [Clostridium
          hathewayi DSM 13479]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          C  C    CV+ CP          +    D+CI C  C   CP  A     E   E 
Sbjct: 44 CTGC--GVCVDGCPAGALKLNGETVVWDEDKCISCDRCIAVCPSFASPKVREMSAEE 98


>gi|260588480|ref|ZP_05854393.1| protein HymB [Blautia hansenii DSM 20583]
 gi|331082243|ref|ZP_08331370.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540955|gb|EEX21524.1| protein HymB [Blautia hansenii DSM 20583]
 gi|330403037|gb|EGG82602.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 624

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YV+  E C  C    C + CPV       +    I+P+ CI C  C   C  DA+  + 
Sbjct: 568 YVINPEFCKGC--GKCAKNCPVGAITGVRKEAYHINPNLCIKCDSCRDNCAFDAVYVEY 624


>gi|224369477|ref|YP_002603641.1| RnfB [Desulfobacterium autotrophicum HRM2]
 gi|223692194|gb|ACN15477.1| RnfB [Desulfobacterium autotrophicum HRM2]
          Length = 273

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C    DCVE C  D  +  +    ++ D CI CG C   CP   I        E
Sbjct: 141 GCLGFGDCVEACKYDAIHVEDGLAVVNYDHCIGCGACVKACPRSIITMADFHEPE 195


>gi|187779124|ref|ZP_02995597.1| hypothetical protein CLOSPO_02719 [Clostridium sporogenes ATCC
           15579]
 gi|187772749|gb|EDU36551.1| hypothetical protein CLOSPO_02719 [Clostridium sporogenes ATCC
           15579]
          Length = 278

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + CI C   +C  VC  D     +    I P  C  CG C   C  +AIK + E   
Sbjct: 59  IDEDICIKC--MECESVCKFDAIKNFK----IDPFLCEGCGACTLICLQNAIKLEDEKTA 112

Query: 64  ELWL 67
           + ++
Sbjct: 113 KTFI 116


>gi|30249729|ref|NP_841799.1| NADH dehydrogenase subunit I [Nitrosomonas europaea ATCC 19718]
 gi|75540328|sp|Q82TV1|NUOI_NITEU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|30180766|emb|CAD85680.1| nuoI; NADH dehydrogenase I (chain I) oxidoreductase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 162

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESEQRDDSTRRTTRYDIDMIKCIFCGFCEEACPVDAI 117


>gi|308049390|ref|YP_003912956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307631580|gb|ADN75882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 236

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C  C+   CV VCP    Y  E    + +   +C  C  C   CP +A + + 
Sbjct: 106 SCQQCQKAPCVMVCPTGAAYRDEKTGIVTMDGSKCAGCKYCIGACPYNARQIND 159


>gi|302389274|ref|YP_003825095.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199902|gb|ADL07472.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 345

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V+ +NCI C  T C + CPV+    E +    ++ + CI C +CE +CP  AI      G
Sbjct: 274 VINDNCIGC--TICAKNCPVNAISGEVKKKHEVNAELCIGCSICEEKCPKGAITMVRGEG 331

Query: 63  LEL 65
              
Sbjct: 332 DRK 334



 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   C + CP D  +   N   I  ++C +C  C  +CP  AI        +  + 
Sbjct: 219 CIACK--QCEKACPFDAIHVVNNVAIIDYEKCRNCMKCVEKCPTKAITSAFAERKKAVIN 276

Query: 69  INS 71
            N 
Sbjct: 277 DNC 279



 Score = 40.7 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI     DC +VCPV      EN L  I  ++C  CG+C  ECP   I
Sbjct: 144 CIG--FGDCAKVCPVGAITMSENGLPVIDEEKCTGCGLCAKECPKQVI 189



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E C  C    CVE CP         E   A+  D CI C +C   CPV+AI  + +    
Sbjct: 246 EKCRNC--MKCVEKCPTKAITSAFAERKKAVINDNCIGCTICAKNCPVNAISGEVKKKH- 302

Query: 65  LWLKINSEYATQWPNITTK 83
              ++N+E          K
Sbjct: 303 ---EVNAELCIGCSICEEK 318


>gi|20428818|emb|CAD21693.1| NADH dependant phenylglyoxylate [Azoarcus evansii]
          Length = 446

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP     +      I     +C+DC +C   C    I  D 
Sbjct: 58  CRQCADPKCVTVCPAGALNKDGTSGVIGWDATKCVDCLLCTVGCAYAGIALDE 110


>gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
 gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
          Length = 596

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C+ C  T C   CPVD    E +    I   +CI CG C+ +C  +AI
Sbjct: 543 IDPQLCVGC--TLCSRNCPVDAIIGERKEAHFIDTTKCIKCGTCKDKCKFNAI 593


>gi|297285975|ref|XP_002802906.1| PREDICTED: hypothetical protein LOC716487 [Macaca mulatta]
          Length = 360

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 36/103 (34%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG C         
Sbjct: 270 EERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCP-------- 319

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
                         N E++  T    +  K++ L +  K +  
Sbjct: 320 --------------NFEFSTETHEELLYNKEKLLNNGDKWEAE 348


>gi|293390124|ref|ZP_06634458.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950658|gb|EFE00777.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 196

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      ++   I PD C  C +C   CP   I  
Sbjct: 106 AFIDENMCIGC--TKCIQACPVDAIIGTNKSMHTIIPDLCTGCELCVAPCPTSCISM 160


>gi|282165314|ref|YP_003357699.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
           paludicola SANAE]
 gi|282157628|dbj|BAI62716.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
           paludicola SANAE]
          Length = 147

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C+  CP     + E   F+ I    CI C  C   CP+   + 
Sbjct: 52  CQHCRDPMCMAACPAGAIKKDEATGFVTIDKMLCIGCKACVWACPISIPQM 102


>gi|117919163|ref|YP_868355.1| response regulator receiver protein [Shewanella sp. ANA-3]
 gi|117611495|gb|ABK46949.1| response regulator receiver protein [Shewanella sp. ANA-3]
          Length = 410

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C  C    C + CP    +     +  I  D+C+ CG C   CP  AI
Sbjct: 21 KCKGCD--ACKQFCPTHAIHGASGAVHSIDEDKCLSCGQCLINCPFSAI 67


>gi|46201902|ref|ZP_00208298.1| COG1145: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 457

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C + CP        +  ++    C   G C   CP  AI+ D   G  L+ ++
Sbjct: 286 TRCFDACPSGALSPLGDAASVDAHVCGGHGACASVCPTGAIRFDVPAGNGLFTRL 340


>gi|323476480|gb|ADX81718.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus HVE10/4]
          Length = 363

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV       +
Sbjct: 263 PTVDFDTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVD 320

Query: 61  P--------GLELWLKINSEYATQWPNITTKKE 85
                      E+W +  ++Y     N+   ++
Sbjct: 321 ESMFTDYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|315924580|ref|ZP_07920799.1| electron transport complex protein RnfB [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622110|gb|EFV02072.1| electron transport complex protein RnfB [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI C    C + CP D  +   N   I   +C +CG+C  +CP  A+  +
Sbjct: 217 CIAC--GLCEKNCPFDAIHVEGNLAVIDYSKCTNCGICVKKCPTHALVKE 264


>gi|282163724|ref|YP_003356109.1| hypothetical protein MCP_1054 [Methanocella paludicola SANAE]
 gi|282156038|dbj|BAI61126.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 253

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + ENCI C    C   CP     +G         EC  CG C   C  DAI+    
Sbjct: 201 INENCIDC--GACSRKCPAGQAQKGSAMA-----ECYLCGRCLKACKKDAIRYGMP 249


>gi|261867802|ref|YP_003255724.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413134|gb|ACX82505.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 196

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      ++   I PD C  C +C   CP   I  
Sbjct: 106 AFIDENMCIGC--TKCIQACPVDAIIGTNKSMHTIIPDLCTGCELCVAPCPTSCISM 160


>gi|239815798|ref|YP_002944708.1| cytochrome C oxidase accessory protein CcoG [Variovorax paradoxus
           S110]
 gi|239802375|gb|ACS19442.1| cytochrome c oxidase accessory protein CcoG [Variovorax paradoxus
           S110]
          Length = 486

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI CG+C   C     K    P L  +  
Sbjct: 281 CIDC--GLCVQVCPTGIDIRQGLQH-----ECIGCGLCVDACDTVMQKMAYAPRLIRYDT 333

Query: 69  IN 70
            N
Sbjct: 334 QN 335


>gi|160897890|ref|YP_001563472.1| cytochrome c oxidase accessory protein CcoG [Delftia acidovorans
           SPH-1]
 gi|160363474|gb|ABX35087.1| cytochrome c oxidase accessory protein CcoG [Delftia acidovorans
           SPH-1]
          Length = 489

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C  T CV+VCPV               ECI CG+C   C     +    
Sbjct: 283 CIDC--TLCVQVCPVGIDIRDGLQY-----ECIGCGLCIDACNSVMDRMHYP 327


>gi|94970030|ref|YP_592078.1| Fe-S-cluster-containing hydrogenase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552080|gb|ABF42004.1| quinol:cytochrome c oxidoreductase iron-sulfur protein precursor
           [Candidatus Koribacter versatilis Ellin345]
          Length = 1014

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           TY     C  C++  C  VCPV    +  E    +  + C+    C   CP  
Sbjct: 833 TYYQPVPCQQCENAPCELVCPVGATVHSSEGLNDMVYNRCVGTRYCSNNCPYK 885


>gi|15605666|ref|NP_213041.1| dimethylsulfoxide reductase chain B [Aquifex aeolicus VF5]
 gi|2982814|gb|AAC06437.1| dimethylsulfoxide reductase chain B [Aquifex aeolicus VF5]
          Length = 170

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
            +    NC  C    CV  CP     + E    + +    CI C  C   CP  AI  
Sbjct: 51  AFYYPMNCFHCDPAPCVVACPTSAMRKREKDGIVYVEQTLCIGCKACIIACPYGAITF 108


>gi|77360047|ref|YP_339622.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874958|emb|CAI86179.1| Electron transport complex protein rnfB [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 184

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD           +  DEC  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCIDM 161


>gi|303256515|ref|ZP_07342529.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|331000614|ref|ZP_08324272.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302860006|gb|EFL83083.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|329571176|gb|EGG52881.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 234

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHT-DCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C H   C   CP              +  D+CI CG+C+  CP D +  D E
Sbjct: 119 DTCRQCAHPVPCANACPQGAIRVDPKTGARYVDEDKCIGCGLCQKACPWDMMSFDRE 175



 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPD 58
           YV  + CI C    C + CP D                C     C   CP  A+   
Sbjct: 149 YVDEDKCIGC--GLCQKACPWDMMSFDREKQKASKCFLCDGEPKCVKACPAAALTYM 203


>gi|294495156|ref|YP_003541649.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
 gi|292666155|gb|ADE36004.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
          Length = 274

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  NC+ C    C ++C  D        L I  + CI CG C   C   AI 
Sbjct: 154 IENNCVAC--GLCEKICKADAISIDNGQLDIDSNSCIFCGECISSCKKSAIN 203


>gi|237733626|ref|ZP_04564107.1| pyruvate formate-lyase activating enzyme [Mollicutes bacterium
          D7]
 gi|229383224|gb|EEO33315.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. D7]
          Length = 151

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C+  CP        + + I  ++C  C  C  +CP  A+K + E  
Sbjct: 6  KCTHC--MTCINNCPTGAIKLIADKIIIDQNKCNGCLRCVNKCPQIALKNEGEYK 58


>gi|94971264|ref|YP_593312.1| hydrogenase 2 protein HybA [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553314|gb|ABF43238.1| Fe-S-cluster-containing hydrogenase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 308

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V   C+ C    C   CP     +      +    D+CI C  C   CP    +   
Sbjct: 105 VKRQCMHCLDPACAAGCPFQALSKDPETGIVTWTEDKCIGCRYCTITCPYHIPRFQW 161


>gi|310827363|ref|YP_003959720.1| anaerobic sulfite reductase subunit C [Eubacterium limosum KIST612]
 gi|308739097|gb|ADO36757.1| anaerobic sulfite reductase subunit C [Eubacterium limosum KIST612]
          Length = 326

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C+ C    CV+ C              +     +CI CG C   CPV A
Sbjct: 169 KDKCVSCN--ACVKACSRKSTGALRMENYKIVRDESKCIGCGECVLACPVGA 218



 Score = 33.8 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA 34
               CI C   +CV  CPV  +   E    
Sbjct: 200 DESKCIGC--GECVLACPVGAWRRSEKKYY 227


>gi|317489061|ref|ZP_07947586.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316911793|gb|EFV33377.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 184

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
          C  C+   C++VCP     + E    +++  + CI C  C   CP +
Sbjct: 43 CQHCEKPACLDVCPTGATAKDEETGIVSVDSELCIGCESCIKACPYE 89


>gi|296133137|ref|YP_003640384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031715|gb|ADG82483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 332

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           +   C+ C +  C  +CP     + +   + I  D C+    C   CP D
Sbjct: 124 IPRRCMHCDNPPCANLCPFGVHNKTKEGAVVIDRDYCMGGAKCRDVCPWD 173


>gi|242278076|ref|YP_002990205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120970|gb|ACS78666.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 652

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + CI C    C+  CP     E    G+    +    C  CG+C   CP  AI+   
Sbjct: 579 VDIKRCIGC--GKCISTCPFGAIKEIDFRGQPKADVIETICQGCGICTSTCPQGAIQLQH 636

Query: 60  EPGLELWLKINS 71
               ++  ++N+
Sbjct: 637 FTDNQILAEVNA 648



 Score = 41.5 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 26/81 (32%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECI- 41
           TYV  + C  C    C+E CP                               I P+ CI 
Sbjct: 235 TYVDWDKCTGC--GICMEKCPSKKADNPFDEELGKTTAINIPFPQAIPKKAVIDPNFCIK 292

Query: 42  ----DCGVCEPECPVDAIKPD 58
                CGVC   CP +AI  D
Sbjct: 293 IKRDKCGVCAKVCPSEAIVYD 313


>gi|322715528|gb|EFZ07099.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 655

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVC--PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   C  P        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 110


>gi|320101017|ref|YP_004176609.1| flavoprotein [Desulfurococcus mucosus DSM 2162]
 gi|319753369|gb|ADV65127.1| flavoprotein [Desulfurococcus mucosus DSM 2162]
          Length = 237

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C LC      + CP         + + +   +C  C VC+  CP  AI  D E
Sbjct: 148 KCSLCNWCAAADSCPTGALRHDPYHRVRVDASKCTRCYVCKDRCPYGAISFDVE 201


>gi|303326473|ref|ZP_07356916.1| nitrate reductase, beta subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864389|gb|EFL87320.1| nitrate reductase, beta subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 486

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C +  CV  CP    Y+ +    +      C     C   CP   +  + +   
Sbjct: 181 CEHCLNPACVASCPSGAIYKRDEDGIVLTDQTRCRSWRFCMSGCPYKKVYFNWKNHH 237


>gi|300712349|ref|YP_003738163.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus
           jeotgali B3]
 gi|299126032|gb|ADJ16371.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus
           jeotgali B3]
          Length = 712

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V++ C       C  +CP D     E  L  + ++C++CG+CE  CP  AI    
Sbjct: 571 VSDACT--LTPTCSNLCPTDAIRRTEWGLEFNHEKCVNCGLCEEGCPESAITMRD 623



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 11  LCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C+   C + CP D       + + I P  C +CG C   CP  A+         +  ++
Sbjct: 310 GCR--ACYDACPHDAVAKPRPDEVDIDPVACQNCGACTSACPTGAVSLREPSNERIAREV 367

Query: 70  NS 71
            +
Sbjct: 368 EA 369


>gi|218779713|ref|YP_002431031.1| hypothetical protein Dalk_1866 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761097|gb|ACL03563.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 371

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            + C  C    CV+ CP       +  +     + CI+C  C+  CP DAI
Sbjct: 308 EDKCKQC--GLCVKHCPTKAMTMAKKSYPKADKNVCINCYCCQEMCPEDAI 356


>gi|153954944|ref|YP_001395709.1| hypothetical protein CKL_2326 [Clostridium kluyveri DSM 555]
 gi|146347802|gb|EDK34338.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
          Length = 264

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V+E C  C    C  VCPV+     E    I    C  C  C   CP +AI+ 
Sbjct: 184 FKVSEKCSGC--GLCARVCPVNNIKMEERNP-IWQHHCERCLACIQWCPYEAIEY 235


>gi|90417835|ref|ZP_01225747.1| NADH dehydrogenase I, I subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337507|gb|EAS51158.1| NADH dehydrogenase I, I subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 163

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 21/101 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                       +   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDLDMVKCIYCGFCQEACPVDAI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                P  E   +   E          K++ L +  + +  
Sbjct: 119 V--EGPNFEFSTETREEL------YYDKQKLLDNGDRWERE 151


>gi|62181045|ref|YP_217462.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62128678|gb|AAX66381.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 655

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVC--PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   C  P        + + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTMQMVLTP 110


>gi|82523739|emb|CAI78739.1| predicted NADH:ubiquinone oxidoreductase, subunit RfnB [uncultured
           gamma proteobacterium]
          Length = 209

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +   EC  C +C   CPVD I     
Sbjct: 115 AFIRENECIGC--TKCIQACPVDAILGAAKQMHTVIASECTGCDLCVEPCPVDCIDMIYP 172

Query: 61  PG 62
             
Sbjct: 173 EE 174


>gi|323473828|gb|ADX84434.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus REY15A]
          Length = 363

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV       +
Sbjct: 263 PTVDFDTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVD 320

Query: 61  P--------GLELWLKINSEYATQWPNITTKKE 85
                      E+W +  ++Y     N+   ++
Sbjct: 321 ESMFTDYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|315634427|ref|ZP_07889714.1| electron transport complex protein RnfB [Aggregatibacter segnis
           ATCC 33393]
 gi|315477017|gb|EFU67762.1| electron transport complex protein RnfB [Aggregatibacter segnis
           ATCC 33393]
          Length = 197

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +    I PD C  C +C   CP   I  
Sbjct: 107 AFIDENMCIGC--TKCIQACPVDAIIGSNKLMHTIIPDLCTGCELCVEPCPTSCISM 161


>gi|237735382|ref|ZP_04565863.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7]
 gi|229381127|gb|EEO31218.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7]
          Length = 257

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C    C++VCP++     E  + I  D C+ C  C   CP  AI        E  
Sbjct: 178 EKCIGC--QTCIKVCPMNNIELIEGKIKI-KDNCMTCLACFHWCPTAAIYM----SKEKE 230

Query: 67  LKINSEY 73
           ++   +Y
Sbjct: 231 IERREKY 237


>gi|227829378|ref|YP_002831157.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|229578177|ref|YP_002836575.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|284996746|ref|YP_003418513.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5]
 gi|227455825|gb|ACP34512.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|228008891|gb|ACP44653.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|284444641|gb|ADB86143.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5]
          Length = 363

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV       +
Sbjct: 263 PTVDFDTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVD 320

Query: 61  P--------GLELWLKINSEYATQWPNITTKKE 85
                      E+W +  ++Y     N+   ++
Sbjct: 321 ESMFTDYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|258404551|ref|YP_003197293.1| response regulator receiver protein [Desulfohalobium retbaense DSM
            5692]
 gi|257796778|gb|ACV67715.1| response regulator receiver protein [Desulfohalobium retbaense DSM
            5692]
          Length = 1142

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
            C LC    CV VCP            + +    C  CG C   CP  A
Sbjct: 1074 CSLC--QACVNVCPYGARSLDWENEQIVVDEILCQGCGACTAVCPNSA 1119



 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 19/72 (26%), Gaps = 20/72 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVD------------------CFYEGENFLAIHPDECIDCGV 45
           V    CI C    C  VCPV                     +   N   +    C  C  
Sbjct: 113 VDAHKCISC--GQCSTVCPVRIPDTFNAGLGERAAIYLPVPHNIPNQYVVDLAHCTRCWK 170

Query: 46  CEPECPVDAIKP 57
           C   CP  A+  
Sbjct: 171 CAEACPTGAVDF 182


>gi|126180361|ref|YP_001048326.1| nitrite and sulphite reductase 4Fe-4S region [Methanoculleus
           marisnigri JR1]
 gi|125863155|gb|ABN58344.1| nitrite and sulphite reductase 4Fe-4S region [Methanoculleus
           marisnigri JR1]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C    C +VC        +  +    + CI CG C   CP +AI   +E
Sbjct: 160 DECEGC--GACEKVCREGAVRVTDGKVLFSEEACIGCGDCITICPGEAIGTASE 211


>gi|161524127|ref|YP_001579139.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|189351116|ref|YP_001946744.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|160341556|gb|ABX14642.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189335138|dbj|BAG44208.1| electron transport complex protein [Burkholderia multivorans ATCC
           17616]
          Length = 320

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C P CPVD I  
Sbjct: 112 AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAM 166


>gi|91202809|emb|CAJ72448.1| strongly similar to nitrate reductase (NarH) [Candidatus Kuenenia
           stuttgartiensis]
          Length = 410

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + I    C     C  +CP      
Sbjct: 175 CNHCTYPGCLAACPRKAIYKRKEDGIVLIDQKRCRGYRKCVEQCPYKKPMY 225


>gi|120554706|ref|YP_959057.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinobacter aquaeolei VT8]
 gi|120324555|gb|ABM18870.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Marinobacter
           aquaeolei VT8]
          Length = 477

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C +C   C     K +   GL  +  
Sbjct: 275 CIDC--GQCVQVCPTGIDIRDGLQY-----ECIGCALCIDACDEVMEKMNYPKGLIRYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENE 330


>gi|150390225|ref|YP_001320274.1| aldo/keto reductase [Alkaliphilus metalliredigens QYMF]
 gi|149950087|gb|ABR48615.1| aldo/keto reductase [Alkaliphilus metalliredigens QYMF]
          Length = 316

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    CVE C        ++ + +   +C+ CG C   CP   I
Sbjct: 269 CEAC--GKCVEACGHGALRIEKDQVVVDHRKCVLCGYCSKYCPQFCI 313


>gi|325294342|ref|YP_004280856.1| hydrogenase, Fe-only [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325064790|gb|ADY72797.1| hydrogenase, Fe-only [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 450

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          + C+ C    C   CP D    G     ++    CI+CG C   CP  AI+  +
Sbjct: 42 DKCVGCD--TCKGHCPADAIKGGLGVAHSVDIMRCINCGQCLVNCPFGAIEQMS 93


>gi|304315005|ref|YP_003850152.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588464|gb|ADL58839.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 128

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    CV +CPV     E +  + I   +CI C  C   CP  AI 
Sbjct: 77  EKCVDC--GACVSLCPVSAICIEDDWEIRIDDQKCIGCSFCVNSCPTGAIM 125


>gi|298675839|ref|YP_003727589.1| RnfABCDGE type electron transport complex subunit B
           [Methanohalobium evestigatum Z-7303]
 gi|298288827|gb|ADI74793.1| electron transport complex, RnfABCDGE type, B subunit
           [Methanohalobium evestigatum Z-7303]
          Length = 290

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T  CI CK   C + CP D          I  ++C  CG+C  +CP   I+       
Sbjct: 213 VCTTGCIGCK--ICEKNCPEDAIKVNNFLAEIDQEKCTACGICVEKCPQGTIEMKETGEK 270

Query: 64  EL 65
             
Sbjct: 271 TK 272



 Score = 33.8 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+      CV  CP      GE+ L  I+ + C  CG+C   CP D +    E
Sbjct: 143 CMG--RGTCVRACPFGAITIGEDRLPHINKNLCTSCGLCIESCPNDILVFGKE 193


>gi|227327963|ref|ZP_03831987.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 316

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPD-ECIDCGVCEPECPVDAI 55
           + C+ C    CV+VCP    +      G+    +     CI C  CE  C   A+
Sbjct: 58  DKCVNC--GKCVDVCPTGVHHMQADNSGQQRHHLDRTANCIGCRKCETVCLSGAL 110


>gi|254485741|ref|ZP_05098946.1| cytochrome c oxidase accessory protein CcoG [Roseobacter sp.
           GAI101]
 gi|214042610|gb|EEB83248.1| cytochrome c oxidase accessory protein CcoG [Roseobacter sp.
           GAI101]
          Length = 412

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV VCP                ECI C +C   C     K     GL  
Sbjct: 194 TGDCIDC--MACVNVCPAGIDIRDGQ-----QMECITCALCIDACDDVMAKIGKPRGLID 246

Query: 66  WLKINSEYATQ 76
           ++ ++ E A +
Sbjct: 247 YIALSDEAAER 257


>gi|150398827|ref|YP_001322594.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150011530|gb|ABR53982.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 654

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           Y+  E C  C    C EVCP+    E +                      I  + CIDCG
Sbjct: 240 YLSEEKCTGC--GSCEEVCPITVPNEFDMGIGMRKAIYKPFPQAVPAKYTIDKESCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C   AI  + +P +  
Sbjct: 298 LCAKVCGPQAINYNQKPEIIE 318


>gi|119774966|ref|YP_927706.1| electron transport complex protein RnfB [Shewanella amazonensis
           SB2B]
 gi|166225085|sp|A1S6N0|RNFB_SHEAM RecName: Full=Electron transport complex protein rnfB
 gi|119767466|gb|ABM00037.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCIDM 161


>gi|257486634|ref|ZP_05640675.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 211

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I+    
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEMHPL 141

Query: 61  P 61
           P
Sbjct: 142 P 142


>gi|168333731|ref|ZP_02691984.1| nitroreductase family protein [Epulopiscium sp. 'N.t. morphotype
          B']
          Length = 255

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
          M  +    CI C    C + CP            I +   CI CG C+  CP  AI    
Sbjct: 1  MINIDENKCIGCSK--CQKSCPSGLIEIQNKKAIISNTGACILCGHCQAVCPSSAISLLG 58

Query: 60 EPGLELWLKINSEYATQWPNI 80
              +     N EY      I
Sbjct: 59 IDYEDNPAYQNVEYNDIKNLI 79


>gi|158522262|ref|YP_001530132.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511088|gb|ABW68055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 353

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   C V  F +            C+ C  C   CP +    + +
Sbjct: 110 CNHCLEPACASACFVKAFKKTPQGPVTYDASVCVGCRYCMIACPFEIPCYEYD 162


>gi|94309880|ref|YP_583090.1| NADH dehydrogenase subunit I [Cupriavidus metallidurans CH34]
 gi|115502539|sp|Q1LPV5|NUOI_RALME RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|93353732|gb|ABF07821.1| NADH:ubiquinone oxidoreductase, chain I [Cupriavidus metallidurans
           CH34]
          Length = 163

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 61  EERCIACKL--CEAVCPALAISIESDVRNDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118


>gi|295098705|emb|CBK87795.1| Fe-S-cluster-containing hydrogenase components 2 [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 151

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C  VCP    +       +    CI C  C   CP  A++
Sbjct: 53  CHQCEDAPCANVCPTGAIHRAAGAWLVEQARCIGCKSCMVACPFGAMQ 100


>gi|293606396|ref|ZP_06688756.1| cytochrome c oxidase accessory protein CcoG [Achromobacter
           piechaudii ATCC 43553]
 gi|292815256|gb|EFF74377.1| cytochrome c oxidase accessory protein CcoG [Achromobacter
           piechaudii ATCC 43553]
          Length = 496

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 14/76 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                 CI CG C   C     K   EPGL  +  
Sbjct: 285 CVDCSL--CVQVCPTGIDIRDGLQY-----MCIGCGACIDACEQVMDKMQYEPGLIRYTS 337

Query: 69  -------INSEYATQW 77
                  +N++ A + 
Sbjct: 338 DRAVQDGLNAKSAREH 353


>gi|237795647|ref|YP_002863199.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum Ba4 str.
           657]
 gi|229262837|gb|ACQ53870.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum Ba4 str.
           657]
          Length = 281

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + CI C    C  +C  D     +    I P  C  CG C   CP++AIK + E   
Sbjct: 62  IDKDICIKC--GKCKSICKFDAIENFK----IDPFLCEGCGTCTLICPLNAIKLEDEKNA 115

Query: 64  ELWL 67
           E ++
Sbjct: 116 ETFI 119


>gi|300777483|ref|ZP_07087341.1| formate dehydrogenase-N, beta subunit [Chryseobacterium gleum ATCC
           35910]
 gi|300502993|gb|EFK34133.1| formate dehydrogenase-N, beta subunit [Chryseobacterium gleum ATCC
           35910]
          Length = 191

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPV 52
           C+ C+   C  VCP D   + E  +       +CI C  C   CP 
Sbjct: 60  CMHCEDPICANVCPADAITKDEYGIVHTADTSKCIGCANCVIGCPF 105


>gi|210623066|ref|ZP_03293553.1| hypothetical protein CLOHIR_01503 [Clostridium hiranonis DSM 13275]
 gi|210153869|gb|EEA84875.1| hypothetical protein CLOHIR_01503 [Clostridium hiranonis DSM 13275]
          Length = 306

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  + CI C    C+E C  D   E     ++    C  CGVCE  CP  AI      
Sbjct: 62  AVIDQDKCIQC--GKCMENCRFDSIMEKNGEFSVKKFGCEGCGVCEYVCPSSAITMQKSA 119

Query: 62  GLELWL 67
             +  +
Sbjct: 120 AGDTMI 125



 Score = 33.8 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 22/79 (27%), Gaps = 4/79 (5%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN----SEYATQW 77
           P    Y G     I  D+CI CG C   C  D+I                    EY    
Sbjct: 51  PKKEAYYGLPKAVIDQDKCIQCGKCMENCRFDSIMEKNGEFSVKKFGCEGCGVCEYVCPS 110

Query: 78  PNITTKKESLPSAAKMDGV 96
             IT +K +          
Sbjct: 111 SAITMQKSAAGDTMIYKDE 129


>gi|218779005|ref|YP_002430323.1| hypothetical protein Dalk_1152 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760389|gb|ACL02855.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 385

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 6   TENCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+LC    C++ CP +      EG+        +CI C  C   CP  AI
Sbjct: 321 PEKCVLCY--QCMKTCPAEAISKPREGKKTPVFDYRKCIRCFCCMEICPEAAI 371


>gi|15678874|ref|NP_275991.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621946|gb|AAB85352.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 128

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    CV +CPV     E +  + +   +CI C  C   CP  AI
Sbjct: 77  EKCMDC--GACVSLCPVGAICIEDDWEIVLDDRKCIGCSFCVNSCPTKAI 124


>gi|239624788|ref|ZP_04667819.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521174|gb|EEQ61040.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47FAA]
          Length = 171

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C+   C++ CP  C  +     F       CI C  C   CP  A +   +  L+ 
Sbjct: 59  ACMHCEDAPCIKGCPTGCLRKDGETGFTVYDASVCIGCHSCAMACPFGAPRFGRDGRLKK 118


>gi|213619202|ref|ZP_03373028.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 143

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|206890184|ref|YP_002248752.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742122|gb|ACI21179.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 198

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 23/106 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPV 52
            +   + CI C    C  VCP  C Y                I    CI C  C   CPV
Sbjct: 56  PFTDKDKCIGC--MRCTTVCPSRCIYIKREKTENKMVVTDYIIDASRCIFCAYCVEACPV 113

Query: 53  DAIKPDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMDGV 96
            A+        E +     EY++   N  I  K++ L +  +    
Sbjct: 114 CALV-----LTEDF-----EYSSYTRNNLIFNKEQLLKNWDEFASK 149


>gi|119505634|ref|ZP_01627705.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2080]
 gi|119458577|gb|EAW39681.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2080]
          Length = 200

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 114 AYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIADECTGCDLCVEPCPVDCIDM 168



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           M  V+ + C  C    CVE CPVDC         I    
Sbjct: 143 MHTVIADECTGCDL--CVEPCPVDCIDMLPRKGGIEHWR 179


>gi|332703001|ref|ZP_08423089.1| response regulator receiver protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553150|gb|EGJ50194.1| response regulator receiver protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1143

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 20/80 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           +V    CI C    C EVCPV    E                        +  D C  C 
Sbjct: 111 FVDPSRCIGC--GICAEVCPVRVKDEFNAGLTERSAIHLPVPQAIPNHYVVDLDNCQRCW 168

Query: 45  VCEPECPVDAIKPDTEPGLE 64
            C   CP  A+    E   +
Sbjct: 169 QCHKACPTGAVDFKFEERPK 188



 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDA 54
            C LC    C++VCP            + +    C  CG C   CP  A
Sbjct: 1075 CSLC--GRCIDVCPYGARSMDTDHQRVVVDELLCQGCGACAAVCPNSA 1120


>gi|319789166|ref|YP_004150799.1| NIL domain protein [Thermovibrio ammonificans HB-1]
 gi|317113668|gb|ADU96158.1| NIL domain protein [Thermovibrio ammonificans HB-1]
          Length = 138

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C+  CP + FY       +    D+C+ CG C P CP+  I 
Sbjct: 85  EKCVHC--GACIAPCPTNAFYLDRETFRVEFDKDKCVGCGHCIPACPLRIIY 134


>gi|256830046|ref|YP_003158774.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579222|gb|ACU90358.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM
           4028]
          Length = 290

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E C  C    C  +C  D   E +   ++ P  C  C VC   CP  AI  
Sbjct: 61  AVIDPEKCTGC--GLCASMCRYDAIDEKDGVFSVAPLRCEGCKVCVAFCPEQAIDF 114



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 24 DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          D  +   +   I P++C  CG+C   C  DAI    
Sbjct: 52 DERFISGHEAVIDPEKCTGCGLCASMCRYDAIDEKD 87


>gi|220904771|ref|YP_002480083.1| hydrogenase, Fe-only [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
 gi|219869070|gb|ACL49405.1| hydrogenase, Fe-only [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
          Length = 418

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
          +  + CI C    C E CP    Y          +P+ CI+CG C   CP  AI 
Sbjct: 30 IDDKKCIGCDL--CQEYCPTGAVYGETGLAHTVAYPEPCINCGQCLTHCPEMAIY 82


>gi|167770601|ref|ZP_02442654.1| hypothetical protein ANACOL_01947 [Anaerotruncus colihominis DSM
          17241]
 gi|167667196|gb|EDS11326.1| hypothetical protein ANACOL_01947 [Anaerotruncus colihominis DSM
          17241]
          Length = 152

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C+   CV  CP  C Y+             CI C  C   CP  A   + E  +E 
Sbjct: 40 ACMHCEDAPCVMGCPSSCLYKDPESGLTLYDNTNCIGCHSCAMACPFGAPSFNAEGKMEK 99


>gi|297585371|ref|YP_003701151.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297143828|gb|ADI00586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 187

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
            C  C++  CV +CP + + +  + + +     C  C +C   CP  A + 
Sbjct: 55  ACNHCQNPVCVSICPHNNYTKRRDGIVVHDDTHCEGCKLCAEACPFQAPQY 105


>gi|330830240|ref|YP_004393192.1| putative NADH:ubiquinone oxidoreductase subunit RnfB [Aeromonas
           veronii B565]
 gi|328805376|gb|AEB50575.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Aeromonas
           veronii B565]
          Length = 192

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    +  +EC  C +C   CP D I+ 
Sbjct: 109 AFIHEDQCIGC--TKCIQACPVDAIVGATKAMHTVIANECTGCDLCVDPCPTDCIEM 163



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           M  V+   C  C    CV+ CP DC         +   +
Sbjct: 138 MHTVIANECTGCDL--CVDPCPTDCIEMIPVPTTVDNWK 174


>gi|323942138|gb|EGB38312.1| nitrate reductase [Escherichia coli E482]
          Length = 306

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECP 51
           C  C +  CV  CP    Y+ E    + I  D+C    +C   CP
Sbjct: 183 CEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCP 227


>gi|288870730|ref|ZP_06409883.1| ferredoxin 2 [Clostridium hathewayi DSM 13479]
 gi|288866077|gb|EFC98375.1| ferredoxin 2 [Clostridium hathewayi DSM 13479]
          Length = 451

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 10 ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C +  C++ CP            I+   CIDCG C   CP  A  
Sbjct: 1  MGCIN--CIKRCPTQAIRVRNGKAQINSKFCIDCGECIRVCPHHAKH 45


>gi|284161787|ref|YP_003400410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284011784|gb|ADB57737.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 557

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + +NC LC    C+  CP++   + +  +  +   CI C +C   CP  AI+ +
Sbjct: 426 INDNCTLCN--ACMNFCPMEAIKKEDGKILFNHALCIACEMCAKACPEKAIEVE 477


>gi|237755469|ref|ZP_04584092.1| 4Fe-4S binding domain protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692369|gb|EEP61354.1| 4Fe-4S binding domain protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 363

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           +    C  C    C  VCP       ++ L +   P  CI C +C   CP   I  + + 
Sbjct: 251 IDNSKCTNCS--ICYNVCPTGALTPDDSKLKVLFSPTLCIKCRICHDVCPEKCIHLEEKL 308

Query: 62  GLELWL 67
            LE ++
Sbjct: 309 YLEDFI 314



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           CV VCP        + + ++ + C++CG C   CP ++ K +    ++ ++K 
Sbjct: 25 KCVNVCPTQAINIENDKIKVNFENCVECGACVGNCPTESYKLNGFDLVDFYVKF 78


>gi|241661892|ref|YP_002980252.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Ralstonia pickettii 12D]
 gi|240863919|gb|ACS61580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
          pickettii 12D]
          Length = 87

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPVD 
Sbjct: 1  MALIITDECINCD--VCEPECPNGAISMGPEIYVIDPGKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPKD-PAHEETHEQLMQKY 76


>gi|7321235|emb|CAB82175.1| nitrate reductase beta-subunit [Paenibacillus sp. A-234]
          Length = 326

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 168 CEHCLNPSCVXSCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFNWQTNKSE 226


>gi|323169986|gb|EFZ55642.1| 4Fe-4S binding domain protein [Escherichia coli LT-68]
 gi|332094006|gb|EGI99059.1| 4Fe-4S binding domain protein [Shigella dysenteriae 155-74]
 gi|332766878|gb|EGJ97078.1| 4Fe-4S ferredoxin-type protein [Shigella flexneri 2930-71]
          Length = 149

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 62  DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 117


>gi|56478503|ref|YP_160092.1| phenylglyoxylate:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
 gi|56314546|emb|CAI09191.1| phenylglyoxylate:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
          Length = 468

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP     +      I     +C+DC +C   C    I  D 
Sbjct: 74  CRQCADPKCVTVCPAGALAKDGASGVIGWDASKCVDCLLCTVGCAYGGIALDE 126


>gi|303244452|ref|ZP_07330787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485150|gb|EFL48079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 132

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           + CI C    C+  CPV      E+F  I   +ECI C  C   CPV AI 
Sbjct: 80  DKCIDC--GACLVHCPVKAITMNEDFKVIFDENECIGCKNCANVCPVKAIN 128


>gi|281358442|ref|ZP_06244923.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
 gi|281315065|gb|EFA99097.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
          Length = 301

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C++  CV  CP      G        + CI CG CE  C   A++
Sbjct: 57  CADCRN--CVPACPAGAHRIGAGGHRFERERCIGCGSCETACLHGALQ 102


>gi|309388856|gb|ADO76736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium praevalens DSM 2228]
          Length = 56

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V++++CILC    C   CPV+C  EG+    I  D+CIDC  C   CPVDAI
Sbjct: 1  MAHVISDDCILC--GACAPECPVECISEGDTQYEIAADDCIDCAACVSVCPVDAI 53


>gi|297616548|ref|YP_003701707.1| aldo/keto reductase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144385|gb|ADI01142.1| aldo/keto reductase [Syntrophothermus lipocalidus DSM 12680]
          Length = 321

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +   C  C    C+E C        E  + +  ++CI CG C   CP   I
Sbjct: 270 IESWCRGC--GSCLEACRYQALELQEGRVEVKKEKCILCGYCSRYCPDFCI 318


>gi|293416256|ref|ZP_06658896.1| sulfite reductase [Escherichia coli B185]
 gi|291432445|gb|EFF05427.1| sulfite reductase [Escherichia coli B185]
          Length = 337

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           M +   E CI C    CV+ C    V C              CI CG C   CP  A + 
Sbjct: 174 MRFT-AERCIGC--GACVKACAHHAVGCLSLKNGKATKEESLCIGCGECVLACPTLAWQR 230

Query: 58  DTEPGLE 64
             +   +
Sbjct: 231 QPQEFWQ 237


>gi|257792776|ref|YP_003183382.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325831001|ref|ZP_08164325.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257476673|gb|ACV56993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325486922|gb|EGC89368.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 220

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           C  C+   C++VCP     + E    +++  + CI C  C   CP +
Sbjct: 79  CQHCEKPACLDVCPTGATAKDEETGIVSVDSELCIGCESCIKACPYE 125


>gi|209885060|ref|YP_002288917.1| i subunit of NADH-quinone oxidoreductase [Oligotropha
           carboxidovorans OM5]
 gi|226737405|sp|B6JH51|NUOI_OLICO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209873256|gb|ACI93052.1| i subunit of NADH-quinone oxidoreductase [Oligotropha
           carboxidovorans OM5]
          Length = 162

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG+C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K   L +  + +  
Sbjct: 117 IV--EGPNFEFATETREEL------YYDKARLLANGDRWERE 150


>gi|188586890|ref|YP_001918435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351577|gb|ACB85847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 333

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 4  VVTENCI-------LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V+ E CI        C    C   CP +     +  + + P++C  CG+C   CP  AIK
Sbjct: 19 VIQERCISYKMRLMDCDK--CSRKCPQNAIKVRKGKVLLSPEDCSGCGICAGACPTHAIK 76

Query: 57 PDTEPGLELWLKI 69
          P+       + +I
Sbjct: 77 PENLNYHTKFKEI 89


>gi|148652690|ref|YP_001279783.1| electron transport complex, RnfABCDGE type subunit B [Psychrobacter
           sp. PRwf-1]
 gi|148571774|gb|ABQ93833.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter sp. PRwf-1]
          Length = 275

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            ++CI C  T C+  CPVD     G++   I  D C  C +C   CPVD I     P  
Sbjct: 112 EDDCIGC--TKCIPACPVDAIIGTGKHMHTIFTDLCTGCELCLAPCPVDCIDLVELPRD 168


>gi|46578589|ref|YP_009397.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603833|ref|YP_968233.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46448000|gb|AAS94656.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564062|gb|ABM29806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311232514|gb|ADP85368.1| hypothetical protein Deval_0197 [Desulfovibrio vulgaris RCH1]
          Length = 333

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C  C    CV VCP       E +  +AI  D C+ C  C   CP    + 
Sbjct: 58  PCFQCDEPWCVPVCPTGAIAKRESDGIVAIDADTCVGCKACITACPWRVPQW 109


>gi|329962378|ref|ZP_08300382.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328530101|gb|EGF56986.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 277

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             E C  C +  CV+ CP     +G+    I  ++CI C  C   CP  A   DT 
Sbjct: 206 DAELCTHCGY--CVKHCPAGAILKGDECNTI-AEKCIKCCACVKGCPQKARSYDTP 258


>gi|312897705|ref|ZP_07757122.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359]
 gi|310621338|gb|EFQ04881.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359]
          Length = 175

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    C+E CP +    GE+ + +  D C  CG C   CP D I  
Sbjct: 59  CRQCPKPKCMEACPFNAISMGEDSVILDQDICKGCGKCAKACPFDGITM 107


>gi|158522835|ref|YP_001530705.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158511661|gb|ABW68628.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 699

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 10  ILCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
             C  + DC++ C  D    GE+    + P +C+ CG CE  CP + I+   +   +   
Sbjct: 135 TGCLGYGDCIKACAFDAIVMGEDGYPVVDPAKCVGCGACEAVCPKNIIR--VKTMSQRLF 192

Query: 68  KINS 71
           + N+
Sbjct: 193 EFNA 196


>gi|306817876|ref|ZP_07451615.1| NADH-quinone oxidoreductase subunit I [Mobiluncus mulieris ATCC
           35239]
 gi|304649355|gb|EFM46641.1| NADH-quinone oxidoreductase subunit I [Mobiluncus mulieris ATCC
           35239]
          Length = 291

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 27/102 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 102 EKCIGCEL--CAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEAC 159

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESL-PSAA 91
           P  A+    +  +      N E       I  K E L P A 
Sbjct: 160 PTRALTMSNDYEIW---DDNRE-----DLIYEKDELLVPVAD 193


>gi|296132692|ref|YP_003639939.1| NIL domain protein [Thermincola sp. JR]
 gi|296031270|gb|ADG82038.1| NIL domain protein [Thermincola potens JR]
          Length = 137

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
           + C  C    C  +CPV   Y     + +    ++CI CG+C   CPV AI
Sbjct: 82  DRCTHC--GHCTSLCPVGALYIIRPSMEVAFDEEKCIVCGLCLKACPVKAI 130


>gi|304315673|ref|YP_003850818.1| sulfite reductase subunit C [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777175|gb|ADL67734.1| sulfite reductase, subunit C [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 329

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 5   VTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
               CI C    CV+ C              +   P+ CI CG C  +CP  A
Sbjct: 173 DPSRCIGC--QACVKNCKRRVTGALTFENFKVVRDPNRCIGCGECILKCPTSA 223


>gi|223558014|gb|ACM91020.1| C-terminal:putative Fe-S cluster [uncultured bacterium URE4]
          Length = 428

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 18 VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          +  CP            I  ++C+DCG C   CP  AI    +    L+
Sbjct: 1  MRSCPTGAIRIRNGKAVITDNKCVDCGECMQVCPHKAIYIKQDDFGRLF 49


>gi|182679344|ref|YP_001833490.1| NADH dehydrogenase subunit I [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|259514766|sp|B2IHV8|NUOI_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|182635227|gb|ACB96001.1| NADH-quinone oxidoreductase, chain I [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 162

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 59  EERCIACKL--CEAICPAKAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDA 116

Query: 55  IKPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGV 96
           I              N+E+A  T+      K   L + A+ +  
Sbjct: 117 IVEGP----------NAEFAVETREELYYDKDRLLQNGARWERE 150


>gi|197118468|ref|YP_002138895.1| electron transfer flavoprotein subunit alpha [Geobacter
          bemidjiensis Bem]
 gi|197087828|gb|ACH39099.1| electron transfer flavoprotein, alpha subunit [Geobacter
          bemidjiensis Bem]
          Length = 436

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          V+   CI C    C  VCP++     E     I  ++CI C  C   CP  A++ 
Sbjct: 16 VIAGKCIAC-GARCQSVCPINGVEMSEQGEPVIETEKCIGCVKCVKACPAGALEM 69



 Score = 36.1 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             + TE CI C    CV+ CP      FY  E    I   E       + E         
Sbjct: 45  PVIETEKCIGCVK--CVKACPAGALEMFYTPEELAIIASFEKHGGEEVDEEELERRRNVA 102

Query: 59  TEPGLELWLKIN 70
              G+ ++++ N
Sbjct: 103 AYKGVWVFVEQN 114


>gi|157960089|ref|YP_001500123.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157845089|gb|ABV85588.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 228

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C    CV  CPV+     E+F     I PD+CI C  C   CP    +    P
Sbjct: 102 CLQCHDAPCVTACPVNANKASEDFDFVRDIDPDKCIGCMQCIEACPHTPSRVQWNP 157


>gi|154173868|ref|YP_001408698.1| sulfur reductase FeS subunit [Campylobacter curvus 525.92]
 gi|112802398|gb|EAT99742.1| sulfur reductase FeS subunit [Campylobacter curvus 525.92]
          Length = 188

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + ++C++C+ + CV+VCP    ++ +  +  +    C+ C  C   CP DA   +
Sbjct: 53  FIRQSCVMCEDSPCVDVCPTGASFKTKEGVTLLDHRICVSCKYCILACPYDARFVE 108


>gi|329765826|ref|ZP_08257392.1| putative ATPase RIL [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137669|gb|EGG41939.1| putative ATPase RIL [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 595

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 1  MTYVV----TENC--ILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCE 47
          MT+ V     E C    C   +C++ CPV+          E      I  + C  CG+C 
Sbjct: 1  MTHRVAVLDKELCQPKKCGL-ECIKYCPVNKSGADCIILNEESKKAQIDENVCNGCGICV 59

Query: 48 PECPVDAI 55
            CP +AI
Sbjct: 60 KVCPFEAI 67


>gi|325957919|ref|YP_004289385.1| archaeoflavoprotein [Methanobacterium sp. AL-21]
 gi|325329351|gb|ADZ08413.1| archaeoflavoprotein, MJ0208 family [Methanobacterium sp. AL-21]
          Length = 230

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C+       CP D    G   + I+  +C  CG C+  CP +A+
Sbjct: 145 ETCKNCEPCQAAAACPQDAITPG---VEINLLKCEGCGTCQTACPFNAV 190


>gi|325263205|ref|ZP_08129940.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium sp. D5]
 gi|324031598|gb|EGB92878.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium sp. D5]
          Length = 258

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 1   MTY--VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           M +  +  E+C  C    CV VCP +              +CIDC  C   CP  A
Sbjct: 176 MPFHPIADESCTGC--GTCVSVCPTEAIDRENPRQT-DETKCIDCFACVKNCPAHA 228


>gi|310827928|ref|YP_003960285.1| hypothetical protein ELI_2339 [Eubacterium limosum KIST612]
 gi|308739662|gb|ADO37322.1| hypothetical protein ELI_2339 [Eubacterium limosum KIST612]
          Length = 275

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  CK   C EVCP+      +  + I+   CI CG C  +CPV A   D    L   
Sbjct: 203 DTCTDCKL--CSEVCPMGSISHDD--VQIYTGICIKCGACIKKCPVHARYYDDAGYLYHK 258

Query: 67  LKI 69
            ++
Sbjct: 259 HEL 261


>gi|301061446|ref|ZP_07202216.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300444485|gb|EFK08480.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 912

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 28/84 (33%), Gaps = 25/84 (29%)

Query: 3  YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECI--- 41
          YV  + CI C    C E CP                  V          AI P+ CI   
Sbjct: 9  YVDMDKCIAC--GACAEKCPKKVDNAYDAGLGKRKAIYVKYAQAVPLKYAIDPEYCIKLT 66

Query: 42 --DCGVCEPECPVDAIKPDTEPGL 63
             CG CE  CP DAI  + +   
Sbjct: 67 KGKCGNCEKICPADAINYEDKERH 90



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           V    C  C  T CV +CP       E      I    C  CG+C   C   A+ 
Sbjct: 844 VNPNKCSSC--TVCVSICPYSAPRMNEKTGKAEIESTLCKGCGLCVASCRSGALH 896


>gi|298675286|ref|YP_003727036.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298288274|gb|ADI74240.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 149

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           C  C    C   CP       +    I H D C  C  C   C + AI  D
Sbjct: 60  CHACIDPPCSRACPTGALTVRKGGGVILHNDLCEGCRYCVDACLIGAIHMD 110


>gi|291086289|ref|ZP_06355289.2| hydrogenase-4 component A [Citrobacter youngae ATCC 29220]
 gi|291068758|gb|EFE06867.1| hydrogenase-4 component A [Citrobacter youngae ATCC 29220]
          Length = 170

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 18 CHQCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 66


>gi|253689906|ref|YP_003019096.1| glycyl-radical enzyme activating protein family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756484|gb|ACT14560.1| glycyl-radical enzyme activating protein family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 316

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 8/55 (14%)

Query: 7   ENCILCKHTDCVEVCPVD-----CFYEGENFLAIHPD-ECIDCGVCEPECPVDAI 55
           + CI C    C EVCP           G+    +    +CI C  CE  C   A+
Sbjct: 58  DKCIDC--GKCAEVCPTGVHRMQADSSGQWHHHLDRTADCIGCRKCETACLSGAL 110


>gi|288575165|ref|ZP_06393522.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570906|gb|EFC92463.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 620

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V    CI C    C+    CP   + +      +    C++CGVC   CP  AI P+
Sbjct: 562 VDPSVCIGC--GICIRDFNCPGLVWDQATGKAMVDDRYCVNCGVCVAVCPKGAIVPE 616


>gi|188997098|ref|YP_001931349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932165|gb|ACD66795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 363

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           +    C  C    C  VCP       ++ L +   P  CI C +C   CP   I  + + 
Sbjct: 251 IDNSKCTNCS--ICYNVCPTGALTPDDSKLKVLFSPTLCIKCRICHDVCPEKCIHLEEKL 308

Query: 62  GLELWL 67
            LE ++
Sbjct: 309 YLEDFI 314



 Score = 35.3 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           CV VCP        + + ++ + C++CG C   CP ++ K +    ++ ++K 
Sbjct: 25 KCVNVCPTQAVNIENDKVKVNFENCVECGACVGNCPTESYKLNGFDLVDFYVKF 78


>gi|119944508|ref|YP_942188.1| electron transport complex, RnfABCDGE type, B subunit [Psychromonas
           ingrahamii 37]
 gi|119863112|gb|ABM02589.1| electron transport complex, RnfABCDGE type, B subunit [Psychromonas
           ingrahamii 37]
          Length = 184

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           +  DEC  C +C   CP D I  
Sbjct: 106 AFIREDECIGC--TKCIQACPVDAILGATRQMHTVITDECTGCELCVEPCPTDCIDM 160



 Score = 35.0 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C+   CVE CP DC   
Sbjct: 135 MHTVITDECTGCEL--CVEPCPTDCIDM 160


>gi|121605716|ref|YP_983045.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120594685|gb|ABM38124.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 474

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CV+VCP                ECI CG C   C     K   E GL  + 
Sbjct: 268 SCVDCNL--CVQVCPTGIDIRKGLQY-----ECIGCGACADVCNTVMDKMGYERGLVKYT 320

Query: 68  KINS 71
             N+
Sbjct: 321 TENA 324


>gi|327399634|ref|YP_004340503.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Hippea maritima DSM 10411]
 gi|327182263|gb|AEA34444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Hippea maritima DSM 10411]
          Length = 146

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C+E C     +  E   + ++PD C+ C +C   CP   IK DT
Sbjct: 59  CRHCDDAPCMEACQNGSMHRDERGYVVVNPDTCVGCWMCVMACPYGVIKTDT 110


>gi|325278986|ref|YP_004251528.1| FAD dependent oxidoreductase [Odoribacter splanchnicus DSM 20712]
 gi|324310795|gb|ADY31348.1| FAD dependent oxidoreductase [Odoribacter splanchnicus DSM 20712]
          Length = 1076

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 12  CKHT----DCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C +      C   CP     +        I  D+CI C  C  +CP  AI         L
Sbjct: 461 CLYGFACNPCSFACPHGAITKTSTSTVPVIDYDKCIGCMECVYQCPGLAIFGYDLRKDNL 520

Query: 66  WLKINSE 72
           +L I  E
Sbjct: 521 FLPIEYE 527


>gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 588

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           V  E C  C+   C ++CPVD     ++ +  I    CI C  C  +CP++AI
Sbjct: 537 VDPEKCSGCE--ICKQICPVDAIKGEKSEVHNIDSKVCIKCKECIDKCPLEAI 587


>gi|90412117|ref|ZP_01220123.1| electron transport complex protein RnfB [Photobacterium profundum
           3TCK]
 gi|90326841|gb|EAS43226.1| electron transport complex protein RnfB [Photobacterium profundum
           3TCK]
          Length = 192

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+    
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIEMIPV 163

Query: 58  DTEPGLELW 66
              P    W
Sbjct: 164 KDTPESWKW 172


>gi|85857982|ref|YP_460184.1| iron-sulfur protein associated with hydrogenases [Syntrophus
           aciditrophicus SB]
 gi|85721073|gb|ABC76016.1| iron-sulfur protein associated with hydrogenases [Syntrophus
           aciditrophicus SB]
          Length = 280

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECP 51
           Y+    C  C    C   CPVD     +     I  D+CI CG C   CP
Sbjct: 199 YIDPGKCQAC--MTCARKCPVDAIISAKGQVHVIDQDKCIKCGTCFEVCP 246


>gi|268609270|ref|ZP_06142997.1| hypothetical protein RflaF_07202 [Ruminococcus flavefaciens FD-1]
          Length = 568

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 12/105 (11%)

Query: 4   VVTENCILCKHTDCVEVCP------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E C+ C    CV  CP           +G    A++PD+CI CG C   C   A   
Sbjct: 7   VKPEKCVGCN--ACVRSCPAPEANITKQLQDGRFITAVNPDKCISCGECVGVCNHGARDY 64

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
             +    +   I  +                   K  G+   ++K
Sbjct: 65  IDDTEECMSHVIKEKLIIMASASIKAVFP----NKWKGILNWFKK 105


>gi|228958423|ref|ZP_04120146.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801281|gb|EEM48175.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 453

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229161141|ref|ZP_04289128.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           R309803]
 gi|228622237|gb|EEK79076.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           R309803]
          Length = 453

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|261343672|ref|ZP_05971317.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rustigianii DSM 4541]
 gi|282568055|gb|EFB73590.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rustigianii DSM 4541]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             +  ENCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 110 AVIDEENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIEM 164


>gi|222095763|ref|YP_002529820.1| respiratory nitrate reductase, beta subunit [Bacillus cereus Q1]
 gi|221239821|gb|ACM12531.1| respiratory nitrate reductase, beta subunit [Bacillus cereus Q1]
          Length = 453

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|160892884|ref|ZP_02073673.1| hypothetical protein CLOL250_00415 [Clostridium sp. L2-50]
 gi|156865443|gb|EDO58874.1| hypothetical protein CLOL250_00415 [Clostridium sp. L2-50]
          Length = 579

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 5   VTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + E C  C    C++  CP     + +  + I    C  CG+C   C  DAI+ + 
Sbjct: 526 IPEKCKKC--GMCLKPGCPA-VIKQPDGTIQIDETMCNGCGLCMKRCKFDAIEKEE 578


>gi|152979394|ref|YP_001345023.1| electron transport complex protein RnfB [Actinobacillus
           succinogenes 130Z]
 gi|150841117|gb|ABR75088.1| electron transport complex, RnfABCDGE type, B subunit
           [Actinobacillus succinogenes 130Z]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD-T 59
            ++  + CI C  T CV+ CPVD      +    + P+ C  C +C   CP D I  +  
Sbjct: 104 AFIHEDMCIGC--TKCVQACPVDAIIGTNKTLHTVIPELCTGCELCVAPCPTDCITMEKV 161

Query: 60  EPGLELW 66
           EP +E W
Sbjct: 162 EPKIENW 168


>gi|15679380|ref|NP_276497.1| heterodisulfide reductase, subunit A [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622491|gb|AAB85858.1| heterodisulfide reductase, subunit A [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 669

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           Y+  + C  C    CVEVCP++     +  +                   I  D CI+C 
Sbjct: 259 YIDEDLCTGC--GSCVEVCPIEMPNYFDEGIGMTKAVYIPFPQAVPLCATIDKDYCIECM 316

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C+  C   A+K D EP    
Sbjct: 317 LCDEICERGAVKHDQEPEEIE 337



 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
               ++ C  C+   C+E+CP       E    ++   C  CG C   CP  A+      
Sbjct: 595 AVTDSDVCGGCE--VCIELCPFGAISIEEGHANVNVALCKGCGTCVAACPSGAMDQQHFR 652

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 653 TEQIMAQIEAAL 664


>gi|308274463|emb|CBX31062.1| hypothetical protein N47_E45740 [uncultured Desulfobacterium sp.]
          Length = 141

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
             + C  C    C  VCP         E  +     +C  C +C P CP  A+
Sbjct: 81  DNDKCTHC--GACTAVCPTGALSIQRPEMTVVFDQSKCSVCELCVPACPPRAM 131


>gi|291514556|emb|CBK63766.1| hypothetical protein AL1_12970 [Alistipes shahii WAL 8301]
          Length = 281

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + C  C    C  +CP      G+      P  CI C  C   CPV A    T 
Sbjct: 210 DADRCTHC--GRCAAICPTQAIARGDEAHT-DPARCIRCCACVKGCPVGARSFHTP 262


>gi|326316383|ref|YP_004234055.1| cytochrome c oxidase accessory protein CcoG [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373219|gb|ADX45488.1| cytochrome c oxidase accessory protein CcoG [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 482

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCPV               ECI CG+C   C     K     GL  +  
Sbjct: 277 CIDC--TLCVQVCPVGIDIRNGLQY-----ECIGCGLCVDACNTVMDKMKYPRGLIRYST 329

Query: 69  IN 70
            N
Sbjct: 330 QN 331


>gi|219852096|ref|YP_002466528.1| nitroreductase [Methanosphaerula palustris E1-9c]
 gi|219546355|gb|ACL16805.1| nitroreductase [Methanosphaerula palustris E1-9c]
          Length = 295

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +V  E C  C    C EVC       G N   I    CI CG C   CPV A+     P 
Sbjct: 28 HVDNEKCTRC--GSCTEVC-RGVLGMGNNGPEIVSPSCIRCGQCVAVCPVGALDHSNAPL 84

Query: 63 LEL 65
             
Sbjct: 85 ANQ 87


>gi|187251162|ref|YP_001875644.1| putative PAS/PAC sensor protein [Elusimicrobium minutum Pei191]
 gi|186971322|gb|ACC98307.1| Putative PAS/PAC sensor protein [Elusimicrobium minutum Pei191]
          Length = 559

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          NC  C    C+  CPV       N   I  DECI CG C   CP  A + +++
Sbjct: 11 NCKNCYK--CIRHCPVKSIRVSGNQAHIINDECILCGQCFVVCPQGAKQIESD 61


>gi|120610212|ref|YP_969890.1| 4Fe-4S ferredoxin [Acidovorax citrulli AAC00-1]
 gi|120588676|gb|ABM32116.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           citrulli AAC00-1]
          Length = 499

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCPV               ECI CG+C   C     K     GL  +  
Sbjct: 294 CIDC--TLCVQVCPVGIDIRNGLQY-----ECIGCGLCVDACNTVMDKMKYPRGLIRYST 346

Query: 69  IN 70
            N
Sbjct: 347 QN 348


>gi|296533711|ref|ZP_06896262.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957]
 gi|296265958|gb|EFH12032.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957]
          Length = 666

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C+++CP      G+  + I  + C  CG C   CP  A + D  P   +  +I
Sbjct: 282 TGC--TRCLDLCPTGAITPGKESVQISAEICAGCGACAAICPTGAAQYDLPPTDAMLRRI 339

Query: 70  NS 71
            +
Sbjct: 340 RA 341


>gi|325678932|ref|ZP_08158530.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324109436|gb|EGC03654.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 560

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 4  VVTENCILCKHTDCVEVCP------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          V  + C+ C    CV  CP            G     ++ D CI CG C   C   A   
Sbjct: 7  VRPDKCVGCN--ACVRSCPAPEANITKIIDGGRFITMVNNDRCIGCGECVKNCNHGARDY 64

Query: 58 DTE 60
            +
Sbjct: 65 IDD 67


>gi|296140859|ref|YP_003648102.1| NADH-quinone oxidoreductase, chain I [Tsukamurella paurometabola
           DSM 20162]
 gi|296028993|gb|ADG79763.1| NADH-quinone oxidoreductase, chain I [Tsukamurella paurometabola
           DSM 20162]
          Length = 167

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 51  EKCIGCEL--CAWSCPADAIYVEGADNTDEERFSPGERYGRVYQINYLRCIGCGLCVKAC 108

Query: 51  PVDAIKP--DTEPGLELWLKINSEYATQWPNITTKKESLPSA 90
           P  A+    D E       ++  +       +   +E  P A
Sbjct: 109 PTRALTMTNDYEMADGERAELIYDKDHLLAPLQPGEEPPPHA 150


>gi|167755797|ref|ZP_02427924.1| hypothetical protein CLORAM_01312 [Clostridium ramosum DSM 1402]
 gi|237734764|ref|ZP_04565245.1| predicted protein [Mollicutes bacterium D7]
 gi|167704736|gb|EDS19315.1| hypothetical protein CLORAM_01312 [Clostridium ramosum DSM 1402]
 gi|229382092|gb|EEO32183.1| predicted protein [Coprobacillus sp. D7]
          Length = 387

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 11 LCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           CK+   CV+ CP+D        + I  D+CI+C +C   C   
Sbjct: 11 GCKNCIKCVKSCPMDAISIVNEQVIIDEDKCINCDICIQACDQK 54


>gi|11498271|ref|NP_069497.1| heterodisulfide reductase, subunit A (hdrA-1) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2649956|gb|AAB90578.1| heterodisulfide reductase, subunit A (hdrA-1) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 404

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 20/78 (25%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGVC 46
           V ENC  C    C EVCP++   E                        I    C  CG C
Sbjct: 100 VNENCTAC--GACKEVCPIEAPDEYNFGLKKKKAIDLPNIMAMPFQYYIDDKYCNKCGEC 157

Query: 47  EPECPVDAIKPDTEPGLE 64
              C  +AI  + E    
Sbjct: 158 VSACKYNAIDLNEEEREM 175


>gi|116051507|ref|YP_789657.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313108854|ref|ZP_07794838.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa 39016]
 gi|122260647|sp|Q02QX9|RNFB_PSEAB RecName: Full=Electron transport complex protein rnfB
 gi|115586728|gb|ABJ12743.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310881340|gb|EFQ39934.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa 39016]
          Length = 188

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI-KPDT 59
            Y+    CI C  T C++ CPVD           +  DEC  C +C   CPVD I   +T
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMRET 163

Query: 60  EPGLELW 66
              +  W
Sbjct: 164 PDDVRHW 170


>gi|260881286|ref|ZP_05404060.2| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM
           20544]
 gi|260849026|gb|EEX69033.1| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM
           20544]
          Length = 206

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
           Y V++ C+ C+   C+ VCP  C   GEN    I    C+ CG C   CPV AI 
Sbjct: 150 YQVSKACVGCR--RCLSVCPQACITMGENDCAHIEDSHCLSCGRCAEVCPVQAIH 202


>gi|224368543|ref|YP_002602706.1| HdrA3 [Desulfobacterium autotrophicum HRM2]
 gi|223691259|gb|ACN14542.1| HdrA3 [Desulfobacterium autotrophicum HRM2]
          Length = 418

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +    CILC    C +VCP +       +       +  + C  CG C   CP  AI  +
Sbjct: 114 IDPGRCILC--GRCEKVCPENAVSPTICHALPRTFLVDINACTGCGKCVAVCPTHAIDLE 171

Query: 59  TEPGLELWLKINSEYATQW 77
            +      L  N  +AT +
Sbjct: 172 RKQDRIKILAENIIWATGF 190


>gi|206560783|ref|YP_002231548.1| ferredoxin [Burkholderia cenocepacia J2315]
 gi|198036825|emb|CAR52725.1| putative electron transport-related protein [Burkholderia
           cenocepacia J2315]
          Length = 303

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C P CPVD I  
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAM 134


>gi|297585367|ref|YP_003701147.1| dimethylsulfoxide reductase subunit B [Bacillus selenitireducens
           MLS10]
 gi|297143824|gb|ADI00582.1| dimethylsulfoxide reductase, chain B [Bacillus selenitireducens
           MLS10]
          Length = 183

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C    C E CP    ++   +  +    D+C+ C +C   CP +  + + E
Sbjct: 57  SCNHCDEPKCAENCPTGAIFKRTEDGLVVHDDDKCVGCKMCLWSCPYEGPQYNEE 111


>gi|88603224|ref|YP_503402.1| nitrite and sulfite reductase 4Fe-4S region [Methanospirillum
           hungatei JF-1]
 gi|88188686|gb|ABD41683.1| nitrite and sulphite reductase 4Fe-4S region [Methanospirillum
           hungatei JF-1]
          Length = 291

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y V   C  C    CV+ C           + ++ D C+ CG+C   CP   IK +
Sbjct: 156 PYRVPGTCTGC--GTCVQYCKEKAISIKNGQIQMNDDLCVHCGMCIQSCPFHIIKAE 210


>gi|2340933|emb|CAA74952.1| hypothetical protein [Methanosarcina mazei]
          Length = 190

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           M Y +  + C  C+     E CP +   E       I   +C  CG+C+  CP +AIK  
Sbjct: 95  MPYNIDRKQCKHCETCPPRENCPHEAISEKNGVTDQIDLLKCKGCGICKELCPYNAIKGG 154

Query: 59  TEPGLELWLKI-NSEYATQWPNITTKKES 86
               L   + + N E       IT  +  
Sbjct: 155 PVEVLVRDVDMRNVEIVKSLQGITVLESP 183


>gi|125973131|ref|YP_001037041.1| thiamine pyrophosphate enzyme-like TPP-binding [Clostridium
           thermocellum ATCC 27405]
 gi|125713356|gb|ABN51848.1| thiamine pyrophosphate enzyme-like TPP-binding protein [Clostridium
           thermocellum ATCC 27405]
          Length = 601

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V E C  CK   C+ + CP          + I+   C+ CG+C   C  DAI
Sbjct: 548 IVIEKCRKCKM--CMRIGCPAIVDMGDH--IEINDALCVGCGLCSKVCNFDAI 596


>gi|325270555|ref|ZP_08137155.1| ferredoxin [Prevotella multiformis DSM 16608]
 gi|324987131|gb|EGC19114.1| ferredoxin [Prevotella multiformis DSM 16608]
          Length = 55

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV    EG+    I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIAC--GTCIDECPVGAISEGD-IYKIDADACTECGTCASVCPNEAI 52


>gi|323702198|ref|ZP_08113865.1| aldo/keto reductase [Desulfotomaculum nigrificans DSM 574]
 gi|323532885|gb|EGB22757.1| aldo/keto reductase [Desulfotomaculum nigrificans DSM 574]
          Length = 315

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + C  C    CV  C     Y       + P+ C  CG C   CP+ AI
Sbjct: 264 IDDWCQGC--GACVAKCGAGALYLEGGQAKVKPELCRLCGYCGAACPLFAI 312


>gi|257066615|ref|YP_003152871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Anaerococcus prevotii DSM 20548]
 gi|256798495|gb|ACV29150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaerococcus prevotii DSM 20548]
          Length = 57

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI  +
Sbjct: 1  MAYRIDENTCISC--GSCEGECPVGAISQGDAAYEIDADACIDCGSCAAVCPVEAIDQE 57


>gi|224369245|ref|YP_002603409.1| IorA2 [Desulfobacterium autotrophicum HRM2]
 gi|223691962|gb|ACN15245.1| IorA2 [Desulfobacterium autotrophicum HRM2]
          Length = 607

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           VT++C  C +      CP          + I    C  CGVC   CP  +I  
Sbjct: 553 VTDDCDGCGYCVSHFECPALVLDSENKRVDIDLALCTGCGVCISVCPKGSIVH 605


>gi|254486059|ref|ZP_05099264.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Roseobacter sp.
          GAI101]
 gi|214042928|gb|EEB83566.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Roseobacter sp.
          GAI101]
          Length = 390

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  E CI C    C   CPV      +N + ++ D C  C  C P CP  +I
Sbjct: 10 IDPEICIRCY--TCEMTCPVGAIEHDDNNVVVNFDTCNFCMDCIPVCPTGSI 59


>gi|187733460|ref|YP_001881530.1| formate hydrogenlyase subunit B [Shigella boydii CDC 3083-94]
 gi|187430452|gb|ACD09726.1| formate hydrogenlyase, subunit B [Shigella boydii CDC 3083-94]
 gi|320173423|gb|EFW48622.1| Formate hydrogenlyase subunit 2 [Shigella dysenteriae CDC
          74-1112]
 gi|320186510|gb|EFW61238.1| Formate hydrogenlyase subunit 2 [Shigella flexneri CDC 796-83]
          Length = 203

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHHCEDAPCAVVCPVNVITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|167750409|ref|ZP_02422536.1| hypothetical protein EUBSIR_01383 [Eubacterium siraeum DSM 15702]
 gi|167656560|gb|EDS00690.1| hypothetical protein EUBSIR_01383 [Eubacterium siraeum DSM 15702]
          Length = 610

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ CI CK       CP       +  + I  + C  C +C   CPV+AI
Sbjct: 556 ISDKCIQCKKCIREIGCP--ALIVADGKVTIDNNLCTGCKLCAQICPVNAI 604


>gi|152992108|ref|YP_001357829.1| ferredoxin-like protein [Sulfurovum sp. NBC37-1]
 gi|151423969|dbj|BAF71472.1| ferredoxin-like protein [Sulfurovum sp. NBC37-1]
          Length = 383

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V ENC  C    C  +CP         F  +      C+ C +C   C  DAI       
Sbjct: 265 VDENCTNC--QICYRICPTGALSSDGKFSLIHFDAMLCLKCRLCHDACEPDAIHLQKGFE 322

Query: 63  LELWLK 68
           ++ + +
Sbjct: 323 IKEFFE 328


>gi|23450982|gb|AAN32622.1|AF373594_2 putative benzoyl-CoA oxygenase [Thauera aromatica]
          Length = 416

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  E CI C    C E+CP++          +  D C  C  C   CP  AI        
Sbjct: 16 IDPEVCIRCN--TCEEMCPINAITHDARNYVVKFDVCKGCLACISPCPTGAIDSWRNVDG 73

Query: 64 ELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
               I  + +  W       ++LP   + D 
Sbjct: 74 TRSYTIEEQLS--W-------DALPDTTEFDN 96


>gi|332534029|ref|ZP_08409878.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036466|gb|EGI72934.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 184

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD           +  DEC  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGATRQMHTVLIDECTGCDLCVEPCPVDCIDM 161


>gi|320201404|gb|EFW75985.1| Electron transport protein HydN [Escherichia coli EC4100B]
          Length = 157

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCPVDTISREHGHIFVEQSRCIGCKSCMLACPFGAM 104


>gi|326772143|ref|ZP_08231428.1| NADH-quinone oxidoreductase, I subunit [Actinomyces viscosus C505]
 gi|326638276|gb|EGE39177.1| NADH-quinone oxidoreductase, I subunit [Actinomyces viscosus C505]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 75  EKCIGCEL--CAWACPADAIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEAC 132

Query: 51  PVDAIKPDTE 60
           P  A+   T+
Sbjct: 133 PTRALTMSTD 142


>gi|302872613|ref|YP_003841249.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575472|gb|ADL43263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 373

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+ C        E    AI  ++C+ CG C   C   A     +    + 
Sbjct: 195 KCVGC--GMCVKSCAQLAITLNEKKKAAIDYEKCVGCGQCVAVCQFGAATVKWDEAASIA 252

Query: 67  LKINSEY 73
            +  +EY
Sbjct: 253 SEKIAEY 259


>gi|228907886|ref|ZP_04071738.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           IBL 200]
 gi|228851781|gb|EEM96583.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           IBL 200]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|228933467|ref|ZP_04096320.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826196|gb|EEM71976.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229069696|ref|ZP_04202982.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus F65185]
 gi|229079334|ref|ZP_04211878.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           Rock4-2]
 gi|228704002|gb|EEL56444.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           Rock4-2]
 gi|228713436|gb|EEL65325.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus F65185]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229155739|ref|ZP_04283845.1| Respiratory nitrate reductase beta subunit [Bacillus cereus ATCC
           4342]
 gi|228627725|gb|EEK84446.1| Respiratory nitrate reductase beta subunit [Bacillus cereus ATCC
           4342]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|242278849|ref|YP_002990978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242121743|gb|ACS79439.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 353

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C   C V  F +  N   +     C+ C  C   CP +    + +  
Sbjct: 105 CNHCLEPACASACFVKAFKKLPNGAVVYDESVCVGCRYCMVACPFEVPTYEYDEP 159


>gi|196039706|ref|ZP_03107010.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           NVH0597-99]
 gi|196046126|ref|ZP_03113354.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           03BB108]
 gi|218903275|ref|YP_002451109.1| respiratory nitrate reductase, beta subunit [Bacillus cereus AH820]
 gi|228914743|ref|ZP_04078352.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927213|ref|ZP_04090276.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229091134|ref|ZP_04222357.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           Rock3-42]
 gi|229121699|ref|ZP_04250922.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           95/8201]
 gi|229184368|ref|ZP_04311575.1| Respiratory nitrate reductase beta subunit [Bacillus cereus BGSC
           6E1]
 gi|196023181|gb|EDX61860.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           03BB108]
 gi|196029409|gb|EDX68012.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           NVH0597-99]
 gi|218539924|gb|ACK92322.1| respiratory nitrate reductase, beta subunit [Bacillus cereus AH820]
 gi|228599164|gb|EEK56777.1| Respiratory nitrate reductase beta subunit [Bacillus cereus BGSC
           6E1]
 gi|228661743|gb|EEL17360.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           95/8201]
 gi|228692265|gb|EEL46001.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           Rock3-42]
 gi|228832539|gb|EEM78113.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845062|gb|EEM90104.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|14521566|ref|NP_127042.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus abyssi GE5]
 gi|14195412|sp|Q9UYZ0|VORD_PYRAB RecName: Full=Ketoisovalerate oxidoreductase subunit vorD;
           Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin
           reductase subunit delta; AltName: Full=2-oxoisovalerate
           oxidoreductase delta chain
 gi|5458785|emb|CAB50272.1| vorD ketoisovalerate oxidoreductase subunit vorD (EC 1.-.-.-)
           [Pyrococcus abyssi GE5]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M  +    C+ C    C + CP    Y  E+    I  D C  CG+C  ECP  AI    
Sbjct: 45  MPVIDESKCVKCY--ICWKFCPEPAIYIKEDGFVAIDYDYCKGCGICANECPTKAITMVR 102

Query: 60  EPG 62
           E  
Sbjct: 103 EEK 105


>gi|291514608|emb|CBK63818.1| electron transport complex, RnfABCDGE type, B subunit [Alistipes
           shahii WAL 8301]
          Length = 299

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+VC  D      N   I P +C  C  C  ECP  AI
Sbjct: 221 CIGC--GKCVKVCAFDAITVENNLAYIDPQKCKLCRKCVNECPTGAI 265


>gi|258649091|ref|ZP_05736560.1| conserved domain protein [Prevotella tannerae ATCC 51259]
 gi|260850732|gb|EEX70601.1| conserved domain protein [Prevotella tannerae ATCC 51259]
          Length = 56

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++C+ C    C+  CP +   EGE   +I+PD C+DCG C   CP  AI
Sbjct: 1  MAYVISDDCVAC--GTCIGECPTESISEGE-KYSINPDSCVDCGACADACPTGAI 52


>gi|257095311|ref|YP_003168952.1| NADH dehydrogenase subunit I [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047835|gb|ACV37023.1| NADH-quinone oxidoreductase, chain I [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 162

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESDQRDDGSRRTTRYDIDLTKCIFCGFCEEACPVDAI 117


>gi|224541295|ref|ZP_03681834.1| hypothetical protein CATMIT_00455 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525732|gb|EEF94837.1| hypothetical protein CATMIT_00455 [Catenibacterium mitsuokai DSM
           15897]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C+   C +VCP       +    I   +C +CG C  +CP   I+
Sbjct: 218 CIGCRL--CTKVCPNGAITVDDFLAHIDYSKCTNCGACVEKCPRKVIQ 263



 Score = 40.7 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI      CV+ C  D  +  +    +  ++C  C  C   CP   I+ 
Sbjct: 144 CIG--LGSCVQACDFDAIHIVDGVAVVDKEKCKGCQKCMEACPNHLIEM 190



 Score = 38.0 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 18/81 (22%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
             V  E C  C    C+E CP              V C    +  +     +  CI C +
Sbjct: 166 AVVDKEKCKGC--QKCMEACPNHLIEMVPYDAIHRVQCNSHDKGAVVTKSCQSGCIGCRL 223

Query: 46  CEPECPVDAIKPDTEPGLELW 66
           C   CP  AI  D       +
Sbjct: 224 CTKVCPNGAITVDDFLAHIDY 244


>gi|212710494|ref|ZP_03318622.1| hypothetical protein PROVALCAL_01556 [Providencia alcalifaciens DSM
           30120]
 gi|212686914|gb|EEB46442.1| hypothetical protein PROVALCAL_01556 [Providencia alcalifaciens DSM
           30120]
          Length = 317

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIH-PDECIDCGVCEPECPVDA--IKPD 58
           + C+ C    CV+VCP    Y      GE    ++   +CI C  CE  C  DA  I   
Sbjct: 59  DKCVGC--GKCVDVCPTGIHYMTTNEQGEAIHRVNRSIDCIGCRKCEEVCISDALDIMGK 116

Query: 59  TEPGLELWLKINSEY 73
                E+   I  +Y
Sbjct: 117 DVTVSEMMDIIMQDY 131


>gi|254422749|ref|ZP_05036467.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190238|gb|EDX85202.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 134

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          MTY +T+ CI C    C+  CP +          I+ D C +C          A+ P
Sbjct: 1  MTYAITDKCISC--QRCIPTCPTNAIERNGATFKINADLCNNCKGFYSVPQCWAVCP 55


>gi|170733685|ref|YP_001765632.1| ferredoxin [Burkholderia cenocepacia MC0-3]
 gi|169816927|gb|ACA91510.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia MC0-3]
          Length = 306

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C P CPVD I  
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCIPPCPVDCIAM 134


>gi|218778937|ref|YP_002430255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760321|gb|ACL02787.1| OhcB1 (iron-sulfur binding domain protein with TAT signal)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 325

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           T  V   C+ C +  C ++CP     + +N +  IHPD C+    C+  CP D
Sbjct: 117 TITVPRRCMHCTNPPCADLCPFGAARKLKNGITRIHPDICLGGAKCKLVCPWD 169


>gi|71274587|ref|ZP_00650875.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Dixon]
 gi|71898126|ref|ZP_00680312.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|170730849|ref|YP_001776282.1| ferredoxin [Xylella fastidiosa M12]
 gi|71164319|gb|EAO14033.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Dixon]
 gi|71732100|gb|EAO34156.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|167965642|gb|ACA12652.1| ferredoxin II [Xylella fastidiosa M12]
          Length = 139

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 82  AWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCI 134


>gi|332528759|ref|ZP_08404736.1| NADH dehydrogenase subunit I [Hylemonella gracilis ATCC 19624]
 gi|332041825|gb|EGI78174.1| NADH dehydrogenase subunit I [Hylemonella gracilis ATCC 19624]
          Length = 180

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 78  EERCIACKL--CEAVCPAMAITIESDARADGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 135


>gi|284008903|emb|CBA75736.1| formate dehydrogenase, beta subunit [Arsenophonus nasoniae]
          Length = 315

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 95  KDGCMHCADPGCLKACPSAGAIIQYANGIVDFDSEHCIGCGYCIAGCPFNIPRLNKEDN 153


>gi|228952515|ref|ZP_04114592.1| Respiratory nitrate reductase 2 beta chain [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807126|gb|EEM53668.1| Respiratory nitrate reductase 2 beta chain [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229023629|ref|ZP_04180122.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus AH1272]
 gi|228737665|gb|EEL88168.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus AH1272]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229178541|ref|ZP_04305906.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           172560W]
 gi|228604945|gb|EEK62401.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           172560W]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|219855390|ref|YP_002472512.1| hypothetical protein CKR_2047 [Clostridium kluyveri NBRC 12016]
 gi|219569114|dbj|BAH07098.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 270

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V+E C  C    C  VCPV+     E    I    C  C  C   CP +AI+ 
Sbjct: 190 FKVSEKCSGC--GLCARVCPVNNIKMEERNP-IWQHHCERCLACIQWCPYEAIEY 241


>gi|218897131|ref|YP_002445542.1| respiratory nitrate reductase, beta subunit [Bacillus cereus G9842]
 gi|228900759|ref|ZP_04064975.1| Respiratory nitrate reductase 2 beta chain [Bacillus thuringiensis
           IBL 4222]
 gi|228965133|ref|ZP_04126229.1| Respiratory nitrate reductase 2 beta chain [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218542610|gb|ACK95004.1| respiratory nitrate reductase, beta subunit [Bacillus cereus G9842]
 gi|228794566|gb|EEM42076.1| Respiratory nitrate reductase 2 beta chain [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228858859|gb|EEN03303.1| Respiratory nitrate reductase 2 beta chain [Bacillus thuringiensis
           IBL 4222]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|222110218|ref|YP_002552482.1| cytochrome c oxidase accessory protein ccog [Acidovorax ebreus
           TPSY]
 gi|221729662|gb|ACM32482.1| cytochrome c oxidase accessory protein CcoG [Acidovorax ebreus
           TPSY]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCP                ECI CG+C   C     K     GL  +  
Sbjct: 275 CIDC--TLCVQVCPTGIDIRNGLQY-----ECIGCGLCVDACNTVMDKMKYPRGLIRFST 327

Query: 69  IN 70
            N
Sbjct: 328 QN 329


>gi|206559193|ref|YP_002229953.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|198035230|emb|CAR51104.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
          Length = 88

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHDESHAQLMEKY 76


>gi|218777911|ref|YP_002429229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759295|gb|ACL01761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 2   TYVVTENCILCKHTDCV-EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T  VT+ C+ C    C+ ++C V+     +    I   +C  CG C   CP +AI+ +  
Sbjct: 196 TVAVTDKCVGC--GACINDICFVNAIRLVDGKAEI-SGDCRGCGRCVEICPSEAIRVNFH 252

Query: 61  PGLELWLKINS 71
            G  +   IN 
Sbjct: 253 GGASVEGAINR 263


>gi|94266345|ref|ZP_01290046.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93453059|gb|EAT03541.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 785

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  CK   C  +CP     F E +    I+   C  CG C   CP+ AI
Sbjct: 715 VDQQCCTGCK--ICRNICPYRAIGFDEEKQVAVINRVLCRGCGTCAAACPLTAI 766


>gi|90410383|ref|ZP_01218399.1| Hypothetical pyruvate formate lyase activating enzyme
           [Photobacterium profundum 3TCK]
 gi|90328624|gb|EAS44908.1| Hypothetical pyruvate formate lyase activating enzyme
           [Photobacterium profundum 3TCK]
          Length = 318

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           + C  C   DCVE CP +      + +      C  C  C   CP  
Sbjct: 75  DMCNHC--GDCVETCPTNALTLISSKVIWDASLCSHCDNCLAVCPKQ 119


>gi|89895973|ref|YP_519460.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335421|dbj|BAE85016.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 344

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           V   C+ C +  C+++CP     +       I  + C     C   CP 
Sbjct: 127 VPRRCMHCDNPTCLKLCPFSAIAKESTGAVSIDDEVCFGGAKCRDVCPW 175


>gi|326334922|ref|ZP_08201123.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692959|gb|EGD34897.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 1031

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  C  VCPV     G      +  + C+    C   CP    + + 
Sbjct: 858 CQQCNNAPCETVCPVGATSHGVQGQNHMAYNRCVGTRYCANNCPYKVRRFNW 909


>gi|312135816|ref|YP_004003154.1| hypothetical protein Calow_1825 [Caldicellulosiruptor owensensis
           OL]
 gi|311775867|gb|ADQ05354.1| protein of unknown function DUF362 [Caldicellulosiruptor owensensis
           OL]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C   +C   CP            +   +CI C  C   CP  AI
Sbjct: 318 CIGC--AECFNTCPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAI 362


>gi|268679340|ref|YP_003303771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617371|gb|ACZ11736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 223

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C    CV VCP +  Y  E    + ++ ++CI C  C   CP D    + E     
Sbjct: 93  SCQQCVDAPCVNVCPTNACYRDEKTGIVTMNTNDCIACKYCIVACPYDVRFINHETKSAE 152


>gi|229172860|ref|ZP_04300414.1| Respiratory nitrate reductase beta subunit [Bacillus cereus MM3]
 gi|228610605|gb|EEK67873.1| Respiratory nitrate reductase beta subunit [Bacillus cereus MM3]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229196384|ref|ZP_04323132.1| Respiratory nitrate reductase beta subunit [Bacillus cereus m1293]
 gi|228587238|gb|EEK45308.1| Respiratory nitrate reductase beta subunit [Bacillus cereus m1293]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|218231347|ref|YP_002366853.1| respiratory nitrate reductase, beta subunit [Bacillus cereus B4264]
 gi|229150389|ref|ZP_04278606.1| Respiratory nitrate reductase beta subunit [Bacillus cereus m1550]
 gi|218159304|gb|ACK59296.1| respiratory nitrate reductase, beta subunit [Bacillus cereus B4264]
 gi|228633086|gb|EEK89698.1| Respiratory nitrate reductase beta subunit [Bacillus cereus m1550]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|206975210|ref|ZP_03236124.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           H3081.97]
 gi|217959677|ref|YP_002338229.1| respiratory nitrate reductase, beta subunit [Bacillus cereus AH187]
 gi|229138871|ref|ZP_04267451.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           BDRD-ST26]
 gi|206746631|gb|EDZ58024.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           H3081.97]
 gi|217064821|gb|ACJ79071.1| respiratory nitrate reductase, beta subunit [Bacillus cereus AH187]
 gi|228644602|gb|EEL00854.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           BDRD-ST26]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|206972160|ref|ZP_03233108.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|206733083|gb|EDZ50257.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           AH1134]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|196033903|ref|ZP_03101314.1| respiratory nitrate reductase, beta subunit [Bacillus cereus W]
 gi|228945761|ref|ZP_04108108.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|195993583|gb|EDX57540.1| respiratory nitrate reductase, beta subunit [Bacillus cereus W]
 gi|228813982|gb|EEM60256.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|153879377|ref|ZP_02004810.1| Ferredoxin [Beggiatoa sp. PS]
 gi|152064159|gb|EDN65190.1| Ferredoxin [Beggiatoa sp. PS]
          Length = 93

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +T+ CI C    C   CP     +GE    I P+ C +C        C   CPVD 
Sbjct: 7  MALYITDECINCD--VCEPECPNGAISQGEEIYIIDPNLCTECVGHYETSQCVDVCPVDC 64

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I  D     E   K+  +Y      +T KK
Sbjct: 65 IPKD-PNHEESEEKLREKYYRLTKELTDKK 93


>gi|20089581|ref|NP_615656.1| flavoprotein [Methanosarcina acetivorans C2A]
 gi|19914498|gb|AAM04136.1| flavoprotein [Methanosarcina acetivorans C2A]
          Length = 239

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           M Y +  + C  C+     E CP     E       I   +C  CG+C+  CP +AIK  
Sbjct: 144 MPYNIDRKQCRHCETCPPRENCPHGAITEKNGVTDQIELLKCKGCGICKELCPYNAIKGG 203

Query: 59  TEPGLELWLKI-NSEYATQWPNITTKKES 86
               L   + + N E       IT  +  
Sbjct: 204 PVEVLVRDVDMRNVEIVKGLQGITVLESP 232


>gi|56475967|ref|YP_157556.1| molybdenum enzyme of unknown function, medium subunit [Aromatoleum
           aromaticum EbN1]
 gi|56312010|emb|CAI06655.1| Molybdenum enzyme of unknown function,medium subunit [Aromatoleum
           aromaticum EbN1]
          Length = 255

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV VCP    Y+      + +    CI C  C   CP DA
Sbjct: 104 CNHCSVPQCVSVCPTGATYKRPEDGVVVVDSGVCIGCKYCIQACPYDA 151


>gi|330835594|ref|YP_004410322.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera cuprina Ar-4]
 gi|329567733|gb|AEB95838.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera cuprina Ar-4]
          Length = 87

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + C  CK   C++VCP   +    + + +H + C++CG     CP DAI      G   +
Sbjct: 25 DICRTCKEKPCIKVCPAGTYERSGDVIEVHYERCLECGAALVACPFDAISFKFPEGGVSF 84


>gi|325294577|ref|YP_004281091.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065025|gb|ADY73032.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 765

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 20/75 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCGV 45
           +  + CI C   +C +VCPV+   E                        I    CI CG 
Sbjct: 242 INPDKCIAC--GECEKVCPVEVPNEFNLGKTKRKAIYKPFPLAIPDVYHIDEAACIFCGE 299

Query: 46  CEPECPVDAIKPDTE 60
           CE  CP  AI    E
Sbjct: 300 CEKVCPTQAINLQAE 314



 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF------LAIHPDECIDCGVCEPECPVDAIKP 57
           +  + C  C+   C+  CP       +        + I P+ C  CG+C   CP  AI  
Sbjct: 552 IDQDKCSRCE--TCLMCCPHGAISVKKGKTPEDNWIEIDPNLCRGCGLCYAACPSKAINF 609


>gi|291545896|emb|CBL19004.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           sp. SR1/5]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP +     +    I  ++C  CG C+  CP   I
Sbjct: 218 CIGCKK--CEKNCPSEAIIVTDFCAHIDYNKCTGCGKCKEVCPRHVI 262



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+      CV+ CP D  +       +  + C  CG C  +CP   I
Sbjct: 144 CMG--FGSCVKACPFDAIHIVNGIAVVDQEACKACGKCVAKCPRHLI 188


>gi|262381167|ref|ZP_06074305.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|262296344|gb|EEY84274.1| ferredoxin [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 219 CIGC--GKCAKECPFEAITVTNNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            C  + DCV  C  D  +         +  ++C  CG C   CP   I
Sbjct: 139 GCLGYGDCVNACAFDAIHINPATGIAEVDEEKCTSCGACVKACPKSII 186


>gi|251791854|ref|YP_003006574.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533241|gb|ACS96487.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           aphrophilus NJ8700]
          Length = 225

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +   +   +   +  C+ C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDPDTGIVDVHKDLCVGCQYCVAVCPYR 140


>gi|237749425|ref|ZP_04579905.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380787|gb|EEO30878.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 274

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP---DTEPGL 63
           +NC +C    C ++CPV+     +   +   + CI CG C   CP ++ +    D E   
Sbjct: 200 DNCSVC--GTCADICPVEAITLTDVSTSTDENLCISCGACISVCPDESRQYRGADYEKFR 257

Query: 64  ELWLK 68
             +++
Sbjct: 258 SKFIE 262


>gi|224824815|ref|ZP_03697922.1| NADH-quinone oxidoreductase, chain I [Lutiella nitroferrum 2002]
 gi|224603308|gb|EEG09484.1| NADH-quinone oxidoreductase, chain I [Lutiella nitroferrum 2002]
          Length = 162

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                  +   I   +CI CG CE  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESEQRDDGTRRTSRYDIDLTKCIFCGFCEEACPVDAI 117


>gi|120611158|ref|YP_970836.1| RnfABCDGE type electron transport complex subunit B [Acidovorax
           citrulli AAC00-1]
 gi|120589622|gb|ABM33062.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           citrulli AAC00-1]
          Length = 243

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +    CI C  T C++ CP D      +    +    C  C +C P CPVD I  +
Sbjct: 86  AVIDELACIGC--TLCIKACPTDAILGTHKRMHTVIEAHCTGCELCIPVCPVDCITME 141


>gi|73540750|ref|YP_295270.1| ferredoxin [Ralstonia eutropha JMP134]
 gi|72118163|gb|AAZ60426.1| Electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           eutropha JMP134]
          Length = 248

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C++ CPVD      +    I P+ C  C +C P CPVD I  
Sbjct: 82  IDESLCIGC--TLCIQACPVDAIAGAAKQMHTIIPELCTGCDLCVPPCPVDCIDM 134


>gi|325660925|ref|ZP_08149552.1| hypothetical protein HMPREF0490_00284 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325472432|gb|EGC75643.1| hypothetical protein HMPREF0490_00284 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 594

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGLELW 66
          +C  C    CV  C V           I  D CI CG C   CP +A +  ++   ++ +
Sbjct: 22 SCKHCYK--CVRNCSVKAISVRHEQAHIMNDHCIHCGKCLEVCPQNAKRFASDLELIKAY 79

Query: 67 LKIN 70
          ++ N
Sbjct: 80 IRQN 83



 Score = 34.2 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI 35
           +++ ++CI C    C+EVCP +      +   I
Sbjct: 45 AHIMNDHCIHC--GKCLEVCPQNAKRFASDLELI 76


>gi|325290061|ref|YP_004266242.1| aldo/keto reductase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965462|gb|ADY56241.1| aldo/keto reductase [Syntrophobotulus glycolicus DSM 8271]
          Length = 314

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + C  C    CVE C     Y  +N   +  + CI CG C   CP   +
Sbjct: 263 IADWCQGC--GQCVEKCSQKALYLKKNIAEVIRERCILCGYCGRSCPHFCL 311


>gi|320162471|ref|YP_004175696.1| ferredoxin [Anaerolinea thermophila UNI-1]
 gi|319996325|dbj|BAJ65096.1| ferredoxin [Anaerolinea thermophila UNI-1]
          Length = 57

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MT+V++ ++CI C    C   CP    Y    +  +   +C DCG C   CP  AI
Sbjct: 1  MTHVISKDDCIQC--GACETECPEGAIYMDGEYYVVDEAKCKDCGSCVDVCPTGAI 54


>gi|317486620|ref|ZP_07945437.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922003|gb|EFV43272.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 392

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           C+ C+   C   C V  F +  +  +   P  C+ C  C   CP +
Sbjct: 100 CMHCEEPACASACFVKAFTKNPDGSVTYDPTLCVGCRYCMVACPFN 145


>gi|315925707|ref|ZP_07921916.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
          alactolyticus ATCC 23263]
 gi|315621025|gb|EFV00997.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
          alactolyticus ATCC 23263]
          Length = 251

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +CI C    C++VCP       EN   +   +C  CG C   CP  A+
Sbjct: 3  SCIHC--GSCLKVCPEPGALSPENPAFVDYQKCTGCGECVAVCPAGAL 48



 Score = 33.8 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI 35
           +V  + C  C   +CV VCP     +    + +
Sbjct: 26 AFVDYQKCTGC--GECVAVCPAGALAQKGKKMTV 57


>gi|310828225|ref|YP_003960582.1| RnfB [Eubacterium limosum KIST612]
 gi|308739959|gb|ADO37619.1| RnfB [Eubacterium limosum KIST612]
          Length = 347

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI CK   CV+VCP +      N  +I+ D+C  C  C  +CP  AI  +
Sbjct: 217 CIACK--ACVKVCPAEAITVENNLASINYDKCTQCQACFEKCPTGAITLE 264


>gi|291530917|emb|CBK96502.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium siraeum 70/3]
          Length = 593

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ CI CK       CP       +  + I  + C  C +C   CPV+AI
Sbjct: 539 ISDKCIQCKKCIREIGCP--ALIVADGKVTIDNNLCTGCKLCAQICPVNAI 587


>gi|237744522|ref|ZP_04575003.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 7_1]
 gi|229431751|gb|EEO41963.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 7_1]
          Length = 324

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A     +   
Sbjct: 172 DRCVAC--GACVKKCKKLSVEALRMENNKIVRDENKCIGCGECVINCPMSAWTRSPKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
           +L +     K N   A  W
Sbjct: 230 KLMIMGRTGKKNPRLAEDW 248


>gi|229190255|ref|ZP_04317257.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus ATCC
           10876]
 gi|228593239|gb|EEK51056.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus ATCC
           10876]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|269866490|ref|XP_002652291.1| Fe-S-cluster-containing hydrogenase components 1 [Enterocytozoon
          bieneusi H348]
 gi|220062798|gb|EED41764.1| Fe-S-cluster-containing hydrogenase components 1 [Enterocytozoon
          bieneusi H348]
          Length = 149

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          TY +   C  C+ + C  VCP    Y  E    + ++ ++CI C  C   CP      + 
Sbjct: 28 TYWLPVMCQQCEESPCTHVCPTGASYRDEKTGMVLVNKEKCIGCKYCMMACPYGVRSWNK 87

Query: 60 E 60
          E
Sbjct: 88 E 88


>gi|145592470|ref|YP_001154472.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145284238|gb|ABP51820.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 132

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 3   YVVTE--NCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAI 55
           ++V +   CI C    C  VCP           G+ +  I    CI CG C   CP  ++
Sbjct: 38  FIVNDRSKCISC--QLCEAVCPAKAIKFHLEENGKRYPGIDWGRCILCGYCVDACPTGSL 95

Query: 56  KPDTEPGLELWLKINS 71
           +  T      W  +N+
Sbjct: 96  QH-TTDVEITWRDLNT 110


>gi|119720693|ref|YP_921188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525813|gb|ABL79185.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 229

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             + CI C    CV VC        + +    + +   +C+ CG C  ECPV A+
Sbjct: 159 DKDKCIGC--GACVSVCASIAGAIKWRKSGRKVEVDAAKCLGCGACVKECPVGAL 211



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 6/45 (13%)

Query: 16  DCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDA 54
            CV+VCP                  +  D+CI CG C   C   A
Sbjct: 133 KCVDVCPTGALQRLPKEKAKMGTALLDKDKCIGCGACVSVCASIA 177


>gi|74318034|ref|YP_315774.1| electron transport complex protein RnfB [Thiobacillus denitrificans
           ATCC 25259]
 gi|123731760|sp|Q3SHB7|RNFB_THIDA RecName: Full=Electron transport complex protein rnfB
 gi|74057529|gb|AAZ97969.1| Electron transport complex, RnfABCDGE type, B subunit [Thiobacillus
           denitrificans ATCC 25259]
          Length = 188

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    I  DEC  C +C   CPVD I  
Sbjct: 106 AFIDEQTCIGC--TLCIQACPVDAISGAAKQMHTIIADECTGCELCLAPCPVDCISM 160


>gi|28199470|ref|NP_779784.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|182682201|ref|YP_001830361.1| ferredoxin [Xylella fastidiosa M23]
 gi|28057585|gb|AAO29433.1| ferredoxin II [Xylella fastidiosa Temecula1]
 gi|182632311|gb|ACB93087.1| electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa M23]
 gi|307578471|gb|ADN62440.1| ferredoxin [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 139

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 82  AWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCI 134


>gi|41017065|sp|O27434|HDRA_METTH RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
          Length = 659

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           Y+  + C  C    CVEVCP++     +  +                   I  D CI+C 
Sbjct: 249 YIDEDLCTGC--GSCVEVCPIEMPNYFDEGIGMTKAVYIPFPQAVPLCATIDKDYCIECM 306

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C+  C   A+K D EP    
Sbjct: 307 LCDEICERGAVKHDQEPEEIE 327



 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
               ++ C  C+   C+E+CP       E    ++   C  CG C   CP  A+      
Sbjct: 585 AVTDSDVCGGCE--VCIELCPFGAISIEEGHANVNVALCKGCGTCVAACPSGAMDQQHFR 642

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 643 TEQIMAQIEAAL 654


>gi|326382755|ref|ZP_08204445.1| NADH dehydrogenase subunit I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198345|gb|EGD55529.1| NADH dehydrogenase subunit I [Gordonia neofelifaecis NRRL B-59395]
          Length = 184

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 49  EKCIGCEL--CAWACPADAIYVEGADNTDDERYSPGERYGRVYQINYLRCIGCGLCIEAC 106

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 107 PTRALTM 113


>gi|291557571|emb|CBL34688.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 593

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ CI CK       CP       +  + I  + C  C +C   CPV+AI
Sbjct: 539 ISDKCIQCKKCIREIGCP--ALIVADGKVTIDNNLCTGCKLCAQICPVNAI 587


>gi|227486762|ref|ZP_03917078.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172]
 gi|227235232|gb|EEI85247.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172]
          Length = 57

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + EN CI C    C   CPV    +G+    I  + CIDCG C   CPV+AI  +
Sbjct: 1  MAYKIDENTCISC--GSCEGECPVGAISQGDAAYEIDANACIDCGSCSAVCPVEAIDQE 57


>gi|224023565|ref|ZP_03641931.1| hypothetical protein BACCOPRO_00268 [Bacteroides coprophilus DSM
           18228]
 gi|224016787|gb|EEF74799.1| hypothetical protein BACCOPRO_00268 [Bacteroides coprophilus DSM
           18228]
          Length = 261

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C  C   +C+EVCP    Y   +   I    + CI C  C  ECP  A   D+ 
Sbjct: 186 VCNDLCYAC--GNCIEVCPTHAIYLSADGSQIETIAERCIRCCACVKECPTGARIFDSP 242



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           + E CI C    CV+ CP         F AI  ++
Sbjct: 218 IAERCIRC--CACVKECPTGARIFDSPFTAILHEK 250


>gi|237808209|ref|YP_002892649.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas
           auensis DSM 9187]
 gi|259494048|sp|C4LEP6|RNFB_TOLAT RecName: Full=Electron transport complex protein rnfB
 gi|237500470|gb|ACQ93063.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas
           auensis DSM 9187]
          Length = 185

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI-KPDT 59
            ++    CI C  T C++ CPVD           I   EC  C +C   CP + I   + 
Sbjct: 108 AFIHENLCIGC--TKCIQACPVDAIIGAPKLMHTILRSECTGCDLCVDPCPTNCIEMIEL 165

Query: 60  EPGLELW 66
               + W
Sbjct: 166 PATPDRW 172


>gi|206889382|ref|YP_002249517.1| hydrogenase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741320|gb|ACI20377.1| hydrogenase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 465

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          NC+ C    C  VCP         +  +I  D+CI+CG C   CP  A++  +
Sbjct: 36 NCVGC--HTCSSVCPAGAVKGSFGDKHSIDLDKCINCGQCLLNCPFGAVEQMS 86


>gi|150400908|ref|YP_001324674.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013611|gb|ABR56062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 160

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++  C LCK   C+++CP        + + I  ++C  C +C+  C  +AI 
Sbjct: 99  ISSKCNLCK--ICIDICPTKAITIENDLINIDKNKCCGCELCQELCQKNAIF 148


>gi|331268846|ref|YP_004395338.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum
           BKT015925]
 gi|329125396|gb|AEB75341.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum
           BKT015925]
          Length = 282

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + +  C  C    C  VC  D     +    I    C  CG C   CP +AI+ + E   
Sbjct: 62  INDKLCTNC--GKCQRVCRFDAISNNK----IDSYSCEGCGTCIIVCPNNAIQLNEEKSA 115

Query: 64  ELWL 67
            +++
Sbjct: 116 NMYI 119


>gi|327310888|ref|YP_004337785.1| NADH-quinone oxidoreductase subunit I [Thermoproteus uzoniensis
           768-20]
 gi|326947367|gb|AEA12473.1| NADH-quinone oxidoreductase, subunit I [Thermoproteus uzoniensis
           768-20]
          Length = 132

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 3   YVVTE--NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+V +   CI C    C  VCP          +G+ +  I    CI CG C   CP  ++
Sbjct: 39  YIVNDRDKCISC--GLCEAVCPAKAVKFSVGPDGKRYPGIDYGRCIFCGYCVDACPTGSL 96

Query: 56  KP-DTEPGLELWLKINSEYATQWPN 79
           +       +   L   ++YA   P 
Sbjct: 97  RHTQWHEVVWTSLDTFAKYAEGDPP 121


>gi|282164059|ref|YP_003356444.1| hypothetical protein MCP_1389 [Methanocella paludicola SANAE]
 gi|282156373|dbj|BAI61461.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 357

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YV    CI C    CV  CPV               +C  C  C   CP  A++    
Sbjct: 203 YVADTACIKC--GKCVASCPVKAIRF-SLGHPRWGWKCQGCQRCINICPQKAVQASLP 257


>gi|256828932|ref|YP_003157660.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578108|gb|ACU89244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C+LC   DCV  CP        + +      C+ C  C   C   A        LEL 
Sbjct: 197 DKCVLC--GDCVRSCPSGAIKLVNDSVETDKMRCLRCCACIRVCQAGARLMTHPKILELG 254

Query: 67  LKINSEYATQWPN 79
             ++ ++A +   
Sbjct: 255 RTLHEKFAERREP 267


>gi|224370160|ref|YP_002604324.1| putative fusion protein, heterodisulfide reductase (HdrA) /
           F420-non-reducing hydrogenase (MvhD) [Desulfobacterium
           autotrophicum HRM2]
 gi|223692877|gb|ACN16160.1| putative fusion protein, heterodisulfide reductase (HdrA) /
           F420-non-reducing hydrogenase (MvhD) [Desulfobacterium
           autotrophicum HRM2]
          Length = 511

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             V    C++C    C   CP    +      AI P  C  CG+C  ECP+DAI+
Sbjct: 315 AVVDDTKCVICL--TCYRCCPHGAIFWENGVAAISPVACQGCGICASECPMDAIQ 367


>gi|157164593|ref|YP_001467233.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           concisus 13826]
 gi|112801850|gb|EAT99194.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter concisus 13826]
          Length = 187

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++C++C+   CVEVCP    ++  + +  +    C+ C  C   CP DA
Sbjct: 56  QSCVMCEDAPCVEVCPTGASFKTADGVTLLDHRICVSCKYCILACPYDA 104


>gi|160872870|ref|ZP_02063002.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Rickettsiella grylli]
 gi|159121669|gb|EDP47007.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Rickettsiella grylli]
          Length = 165

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 63  EERCIACKL--CEAVCPALAITIEAEPREDGSRRTTLYEIDLFKCIYCGFCEESCPVDAI 120

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
               E  +  +   N         I TK++ L    + +    K
Sbjct: 121 ---VETNIPHYHFENRG-----EQIMTKQKLLAIGDRYEKQIAK 156


>gi|88602962|ref|YP_503140.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
          JF-1]
 gi|88188424|gb|ABD41421.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
          hungatei JF-1]
          Length = 113

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  +  + CI C      E CP+D   E +    +  D CI CGVC   CP  AI     
Sbjct: 20 MAQIDEDACIACGICR-DERCPMDAIVEEDGEFQVLNDRCIGCGVCIITCPSKAITLIER 78

Query: 61 PGLE 64
          P  E
Sbjct: 79 PVQE 82


>gi|332297327|ref|YP_004439249.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
 gi|332180430|gb|AEE16118.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
          Length = 170

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 24/70 (34%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C  C+   CV+ C        +  +     +C+ C  C   CP   I P  + G    +
Sbjct: 57  SCRHCEQPLCVKACIAGALSVVDGVIVRDALKCVGCHTCILSCPYGCIVPAPDDGSGHSV 116

Query: 68  KINSEYATQW 77
               E  T  
Sbjct: 117 VQKCELCTSN 126


>gi|325479026|gb|EGC82127.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 267

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C +VCP D  +  +    +  ++C+ CG C   CP + I
Sbjct: 143 CVGC--GSCEKVCPFDAIHVKDGVAVVDREKCVACGKCVATCPKNII 187


>gi|317490285|ref|ZP_07948771.1| nitroreductase [Eggerthella sp. 1_3_56FAA]
 gi|325833585|ref|ZP_08166034.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|316910575|gb|EFV32198.1| nitroreductase [Eggerthella sp. 1_3_56FAA]
 gi|325485509|gb|EGC87978.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 260

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +    CI C    C E CP       +   A+   +C+ CG C   CP  A+        
Sbjct: 9  IDEARCIGC--GLCREDCPAANIVVEQGKAAVISQDCLMCGHCVAICPQAAVTM------ 60

Query: 64 ELWLKINSEYATQWPN 79
            + +   E     P 
Sbjct: 61 TGFEEEPRELDAGAPT 76


>gi|303327686|ref|ZP_07358126.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp.
          3_1_syn3]
 gi|302862047|gb|EFL84981.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp.
          3_1_syn3]
          Length = 418

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
          V  E CI C    C E CP    Y   G      +P+ CI+CG C   CP  A+ 
Sbjct: 30 VDAEKCIGCD--TCQEYCPSGAIYGETGAAHEVAYPEACINCGQCLTHCPEFAVY 82


>gi|229029860|ref|ZP_04185930.1| Respiratory nitrate reductase beta subunit [Bacillus cereus AH1271]
 gi|228731475|gb|EEL82387.1| Respiratory nitrate reductase beta subunit [Bacillus cereus AH1271]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|161527803|ref|YP_001581629.1| ATPase RIL [Nitrosopumilus maritimus SCM1]
 gi|160339104|gb|ABX12191.1| ABC transporter related [Nitrosopumilus maritimus SCM1]
          Length = 595

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 1  MTYVVT----ENC--ILCKHTDCVEVCPVD-------CFYEGENFLAIHPDECIDCGVCE 47
          MT+ V     E C    C   +C++ CPV+          E      I  D C  CG+C 
Sbjct: 1  MTHRVGVLDHELCQPKKCGL-ECIKYCPVNKSGADCIVLNEESKKAQIDEDICNGCGICV 59

Query: 48 PECPVDAI 55
            CP DAI
Sbjct: 60 KVCPFDAI 67



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYE 28
          +  + C  C    CV+VCP D    
Sbjct: 47 IDEDICNGC--GICVKVCPFDAITI 69


>gi|110798895|ref|YP_695767.1| ferredoxin [Clostridium perfringens ATCC 13124]
 gi|168215287|ref|ZP_02640912.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens CPE str. F4969]
 gi|110673542|gb|ABG82529.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens ATCC 13124]
 gi|170713321|gb|EDT25503.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens CPE str. F4969]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP        N   I  ++C  CG+C  +CP  AI 
Sbjct: 219 CIGCKL--CEKNCPSKAIRIENNLAIIDYEKCTSCGICVSKCPKKAIN 264


>gi|78045112|ref|YP_358958.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997227|gb|ABB16126.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 144

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+   
Sbjct: 59  EQCKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIRVID 112


>gi|20808295|ref|NP_623466.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|20516898|gb|AAM25070.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
          Length = 156

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E CI C   +C+  CP       +    I P++C DCG C   CPV AI
Sbjct: 106 VDEEKCIGC--GECLRFCPFKAIELKDGVAHIDPNKCRDCGRCIDVCPVGAI 155


>gi|89895846|ref|YP_519333.1| formate dehydrogenase beta subunit [Desulfitobacterium hafniense
           Y51]
 gi|89335294|dbj|BAE84889.1| formate dehydrogenase beta subunit [Desulfitobacterium hafniense
           Y51]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C    C++ C  +   + E     I  D+CI CG C   CP D  + D
Sbjct: 74  CFHCADAACLKACSSEAISKTETGFTIIDEDKCIGCGYCVTNCPFDIPRID 124


>gi|83409917|emb|CAI64338.1| heterodisulfide reductase, alpha subunit [uncultured archaeon]
          Length = 660

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C+ C    CV +CP       ++ L I    C  CG C   CP  A+
Sbjct: 588 VDEDICVAC--GVCVPMCPFQALSIEDDKLKILTALCKGCGTCMAACPTGAL 637



 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 21/82 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-------------------ENFLAIHPDECIDC 43
           Y+  + C  C    C E CPV+  Y                          +    CIDC
Sbjct: 251 YLNIDECTGC--GLCTEKCPVEVPYVEFDEGIGTRKAIYTPFPQAVPLRALVDKSICIDC 308

Query: 44  GVCEPECPVDAIKPDTEPGLEL 65
           G C   C   AI  D +     
Sbjct: 309 GACIKACERGAIDMDQQETFSE 330


>gi|114563344|ref|YP_750857.1| electron transport complex protein RnfB [Shewanella frigidimarina
           NCIMB 400]
 gi|114334637|gb|ABI72019.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 193

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 108 AYIREDECIGC--TKCIQACPVDAILGAGKLMHTVIAKDCTGCDLCVEPCPVDCIDM 162


>gi|219670276|ref|YP_002460711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540536|gb|ACL22275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C    C++ C  +   + E     I  D+CI CG C   CP D  + D
Sbjct: 74  CFHCADAACLKACSSEAISKTETGFTIIDEDKCIGCGYCVTNCPFDIPRID 124


>gi|331085360|ref|ZP_08334446.1| hypothetical protein HMPREF0987_00749 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330408143|gb|EGG87633.1| hypothetical protein HMPREF0987_00749 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 594

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGLELW 66
          +C  C    CV  C V           I  D CI CG C   CP +A +  ++   ++ +
Sbjct: 22 SCKHCYK--CVRNCSVKAISVRHEQAHIMNDHCIHCGKCLEVCPQNAKRFASDLELIKAY 79

Query: 67 LKIN 70
          ++ N
Sbjct: 80 IRQN 83



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI 35
           +++ ++CI C    C+EVCP +      +   I
Sbjct: 45 AHIMNDHCIHC--GKCLEVCPQNAKRFASDLELI 76


>gi|310827037|ref|YP_003959394.1| hypothetical protein ELI_1445 [Eubacterium limosum KIST612]
 gi|308738771|gb|ADO36431.1| hypothetical protein ELI_1445 [Eubacterium limosum KIST612]
          Length = 259

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  E CI C    C + C        +    +   +CI CG C   CP  A+
Sbjct: 11 IDREKCIGC--GLCEKDCVAHNIALEDGKARVRAQDCILCGHCVAVCPKAAV 60


>gi|237795239|ref|YP_002862791.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          Ba4 str. 657]
 gi|229260949|gb|ACQ51982.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          Ba4 str. 657]
          Length = 574

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|228985246|ref|ZP_04145411.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774541|gb|EEM22942.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|242277946|ref|YP_002990075.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           salexigens DSM 2638]
 gi|242120840|gb|ACS78536.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           salexigens DSM 2638]
          Length = 309

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDC-FYEGENFLAIHPD-ECIDCGVCEPECPVDAI 55
            + CI C    CV VCP             I  D ECI C  CE  C   A+
Sbjct: 54  KDQCINC--GACVSVCPAGVHKIAAAGKHFIDRDAECIGCRKCEHACLQSAL 103


>gi|332140733|ref|YP_004426471.1| electron transport complex protein RnfB [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550755|gb|AEA97473.1| electron transport complex protein RnfB [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 193

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      ++   +  DEC  C +C   CPVD I  
Sbjct: 111 AFIREDECIGC--TKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCIDM 165



 Score = 33.8 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C    CV+ CPVDC   
Sbjct: 140 MHTVITDECTGCDL--CVDPCPVDCIDM 165


>gi|47566895|ref|ZP_00237613.1| nitrate reductase, beta subunit [Bacillus cereus G9241]
 gi|47556524|gb|EAL14857.1| nitrate reductase, beta subunit [Bacillus cereus G9241]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|330818356|ref|YP_004362061.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia gladioli BSR3]
 gi|327370749|gb|AEA62105.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia gladioli BSR3]
          Length = 90

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ ++Y
Sbjct: 59 IPRD-PQHAETQDQLMAKY 76


>gi|317480456|ref|ZP_07939552.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316903403|gb|EFV25261.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 208

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C +  CV+ CP     +G+    +  ++CI C  C   CP  A   DT 
Sbjct: 136 VDAERCTHCGY--CVKHCPAGAIIKGDECNTV-AEKCIKCCACVKGCPQKARTYDTP 189


>gi|289523847|ref|ZP_06440701.1| conserved domain protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289502503|gb|EFD23667.1| conserved domain protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 57

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  + CI C+   CV VCP +     +    + PD CI+CG C   CPV AI
Sbjct: 4  AVVDRDTCIGCE--ACVGVCPAEAISIEDGKAKVDPDTCIECGACVSTCPVSAI 55


>gi|269102486|ref|ZP_06155183.1| anaerobic sulfite reductase subunit C [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162384|gb|EEZ40880.1| anaerobic sulfite reductase subunit C [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 336

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 3   YVVTENCILCKHTDCVEVC---PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +   E CI C    CV  C    V C             +CI CG C   CP  A     
Sbjct: 174 HFNAERCIGC--GACVRACEHHAVGCLSLKNGKAIKEESKCIGCGECVLACPTLA--WQR 229

Query: 60  EPGLELWLKINSEYATQWP 78
           +P     +K+    + + P
Sbjct: 230 DPKQLYMVKLGGRTSKKTP 248



 Score = 34.2 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C + DC +    D    G   +  + + CI CG C   C   A+  
Sbjct: 152 GCPN-DCAKANMADFGVLGVAKMHFNAERCIGCGACVRACEHHAVGC 197


>gi|229007070|ref|ZP_04164697.1| Respiratory nitrate reductase beta subunit [Bacillus mycoides
           Rock1-4]
 gi|228754219|gb|EEM03637.1| Respiratory nitrate reductase beta subunit [Bacillus mycoides
           Rock1-4]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229085128|ref|ZP_04217378.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           Rock3-44]
 gi|228698182|gb|EEL50917.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           Rock3-44]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229096668|ref|ZP_04227639.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           Rock3-29]
 gi|229102759|ref|ZP_04233458.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           Rock3-28]
 gi|229115645|ref|ZP_04245050.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           Rock1-3]
 gi|228667787|gb|EEL23224.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           Rock1-3]
 gi|228680691|gb|EEL34869.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           Rock3-28]
 gi|228686874|gb|EEL40781.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           Rock3-29]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229132983|ref|ZP_04261825.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           BDRD-ST196]
 gi|228650480|gb|EEL06473.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           BDRD-ST196]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|256829146|ref|YP_003157874.1| iron-sulfur cluster-binding protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578322|gb|ACU89458.1| iron-sulfur cluster-binding protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 321

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C++  C  +CP     +    +  I+ + C+    C+  CP  
Sbjct: 120 IPRRCLHCQNPPCANLCPWGAASKDAKGIVSINDEICLGGSKCKDVCPWH 169


>gi|220925117|ref|YP_002500419.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219949724|gb|ACL60116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
             C  T C+EVCP        + +A+ P  C  CG C   CP  A
Sbjct: 281 TGC--TRCLEVCPTGAIAPAGDHVAVDPFVCAGCGACASVCPTGA 323



 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE C LC    CV  CP     +  +          C+ CG+C   CP D I  +     
Sbjct: 521 TEACTLC--HACVGACPTSALSDDPDRPVLTFSESLCVQCGLCAATCPEDVITLEPRLDF 578

Query: 64  ELWLKINSEYATQWP 78
             W         + P
Sbjct: 579 AAWAAPRRTLKEEEP 593


>gi|254514092|ref|ZP_05126153.1| cytochrome c oxidase accessory protein CcoG [gamma proteobacterium
           NOR5-3]
 gi|219676335|gb|EED32700.1| cytochrome c oxidase accessory protein CcoG [gamma proteobacterium
           NOR5-3]
          Length = 469

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C+   CV+VCP                ECI C +C   C     K D  PGL  +
Sbjct: 269 CIDCEL--CVQVCPTGIDIRDGLQY-----ECIGCALCIDACDSVMRKMDYAPGLVRY 319


>gi|192358977|ref|YP_001981503.1| Electron transport complex protein rnfB [Cellvibrio japonicus
           Ueda107]
 gi|190685142|gb|ACE82820.1| Electron transport complex protein rnfB [Cellvibrio japonicus
           Ueda107]
          Length = 223

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CP+D      +    I  DEC  C +C   CPVD I+ 
Sbjct: 115 AFIREDECIGC--TKCIQACPMDAILGAAKQMHTIIADECTGCDLCVEPCPVDCIEM 169


>gi|184157307|ref|YP_001845646.1| NADH:ubiquinone oxidoreductase subunit RnfB [Acinetobacter
           baumannii ACICU]
 gi|332873434|ref|ZP_08441387.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6014059]
 gi|183208901|gb|ACC56299.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Acinetobacter baumannii ACICU]
 gi|322507192|gb|ADX02646.1| RnfB [Acinetobacter baumannii 1656-2]
 gi|323517170|gb|ADX91551.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332738380|gb|EGJ69254.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6014059]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 89  EDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|148642371|ref|YP_001272884.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551388|gb|ABQ86516.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
          Length = 347

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
           +++ +  CI CK   C++ CPV   + E +  + ++P +CI CG C   CP
Sbjct: 125 FIIDDYLCIRCKK--CMKQCPVGAIHVEDDGKVVVNPFKCISCGECLDVCP 173



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 13/78 (16%)

Query: 4   VVTENCILCKHTDCVEVCPV-----------DCFYEGENFLAIHPDECIDCGVCEPECPV 52
           V+ E CI C    C+  CP            D   EG  +  I+   CI CG C   CP 
Sbjct: 42  VIKEYCIGC--GACISSCPSPNAIKLVRDEDDETKEGVTYPIINKSACIRCGFCAEVCPT 99

Query: 53  DAIKPDTEPGLELWLKIN 70
           +    +      L  + N
Sbjct: 100 EPKTLECGENHLLKPEFN 117



 Score = 34.6 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 18/73 (24%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           +    CI C    C EVCP +                     +    I    CI C  C 
Sbjct: 82  INKSACIRC--GFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCM 139

Query: 48  PECPVDAIKPDTE 60
            +CPV AI  + +
Sbjct: 140 KQCPVGAIHVEDD 152


>gi|301154726|emb|CBW14189.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 225

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       +   +  C+ C  C   CP        E
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDPETGIVDVTKDLCVGCQYCIAVCPYRVRFIHPE 147


>gi|281417323|ref|ZP_06248343.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium thermocellum JW20]
 gi|281408725|gb|EFB38983.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium thermocellum JW20]
          Length = 578

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V E C  CK   C+ + CP          + I+   C+ CG+C   C  DAI
Sbjct: 525 IVIEKCRKCKM--CMRIGCPAIVDMGDH--IEINDALCVGCGLCSKVCNFDAI 573


>gi|168217465|ref|ZP_02643090.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens NCTC 8239]
 gi|182380464|gb|EDT77943.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens NCTC 8239]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP        N   I  ++C  CG+C  +CP  AI 
Sbjct: 219 CIGCKL--CEKNCPSKAIRVENNLAIIDYEKCTSCGICVSKCPKKAIN 264


>gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
          Length = 624

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIK 56
           TY++  E C  C    C + CP      GE      I   +CI CG C   CP  A+ 
Sbjct: 567 TYIIDEETCRGCSK--CAKGCPAGAI-AGELKHVFTIRQQQCIKCGACAEACPFGAVH 621


>gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 633

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C  C  T C   CP +    E +    +  ++CI CG+C   C   A+
Sbjct: 582 EDACTGC--TLCARKCPQEAITGEKKEPHVLDQEKCIKCGICYDVCKFGAV 630


>gi|296169182|ref|ZP_06850836.1| NADH-quinone oxidoreductase subunit I [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896161|gb|EFG75827.1| NADH-quinone oxidoreductase subunit I [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 181

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|291614848|ref|YP_003525005.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291584960|gb|ADE12618.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 184

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    I   EC  C +C   CPVD I  
Sbjct: 105 AFIDEQTCIGC--TLCLQACPVDAIVGAAKQMHTIIASECTGCELCIAPCPVDCISM 159


>gi|228939280|ref|ZP_04101873.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972159|ref|ZP_04132775.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978772|ref|ZP_04139143.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           Bt407]
 gi|228781033|gb|EEM29240.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           Bt407]
 gi|228787643|gb|EEM35606.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820475|gb|EEM66507.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939856|gb|AEA15752.1| respiratory nitrate reductase beta [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|288573617|ref|ZP_06391974.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans
          DSM 11002]
 gi|288569358|gb|EFC90915.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans
          DSM 11002]
          Length = 586

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
          Y V  +C  C    CV  CPV              D C+ CG C   CPV A  I+ D  
Sbjct: 14 YTVKNDCQDCYK--CVRACPVKAIKIENGHAQEISDHCVLCGRCVEICPVGAKRIRDDRP 71

Query: 61 PGLE 64
              
Sbjct: 72 EAER 75


>gi|182625172|ref|ZP_02952948.1| aminotransferase, class V [Clostridium perfringens D str.
          JGS1721]
 gi|177909631|gb|EDT72065.1| aminotransferase, class V [Clostridium perfringens D str.
          JGS1721]
          Length = 272

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + C++CG C   CP +A+     
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMLDGKAHIKNESCMECGHCIAICPKEAVSDSDY 58

Query: 61 PGLE 64
             +
Sbjct: 59 DMSK 62


>gi|167772077|ref|ZP_02444130.1| hypothetical protein ANACOL_03451 [Anaerotruncus colihominis DSM
           17241]
 gi|167665875|gb|EDS10005.1| hypothetical protein ANACOL_03451 [Anaerotruncus colihominis DSM
           17241]
          Length = 617

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 2   TYVVTE-NCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +V+ +  C  CK   C+ + CP     +G   + I    C+ C +C   C   AI
Sbjct: 559 PFVIDDEKCKKCK--ACMRIGCPAINITDG--RVVIDETLCVGCDLCTKLCSFGAI 610


>gi|153833468|ref|ZP_01986135.1| sulfite reductase, subunit C [Vibrio harveyi HY01]
 gi|269964103|ref|ZP_06178405.1| hypothetical protein VME_47890 [Vibrio harveyi 1DA3]
 gi|148870243|gb|EDL69178.1| sulfite reductase, subunit C [Vibrio harveyi HY01]
 gi|269831162|gb|EEZ85319.1| hypothetical protein VME_47890 [Vibrio harveyi 1DA3]
          Length = 333

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            CI C    CV+ C    VDC    +        +CI CG C   CP  A     +P   
Sbjct: 179 RCIGC--GACVKACAHHAVDCLSLKDGKAVKEESKCIGCGECVLACPTLA--WRRDPKQF 234

Query: 65  LWLKINSEYATQWPNI 80
             +K+    + + P +
Sbjct: 235 YMVKLGGRTSKKTPRV 250


>gi|118602190|ref|YP_903405.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567129|gb|ABL01934.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 179

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V    CI C  T C++VCPVD F      +  +  DEC  C +C P CPVD I      
Sbjct: 112 FVDEAVCIGC--TLCIQVCPVDAFLGASKMMTQVIIDECTGCDLCIPVCPVDCIHVQEIT 169

Query: 62  GLELW 66
              ++
Sbjct: 170 VSNIF 174



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           MT V+ + C  C    C+ VCPVDC +  E  +
Sbjct: 140 MTQVIIDECTGCDL--CIPVCPVDCIHVQEITV 170


>gi|299141262|ref|ZP_07034399.1| hypothetical protein HMPREF0665_00832 [Prevotella oris C735]
 gi|298577222|gb|EFI49091.1| hypothetical protein HMPREF0665_00832 [Prevotella oris C735]
          Length = 56

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CP     EG+   +I+P+ C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIAC--GTCIDECPAGAISEGD-IYSINPEACTECGTCADVCPNEAI 52


>gi|298377596|ref|ZP_06987548.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_19]
 gi|298265615|gb|EFI07276.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_19]
          Length = 310

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 219 CIGC--GKCAKECPFEAITVTNNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            C  + DCV  C  D  +         +  ++C  CG C   CP + I
Sbjct: 139 GCLGYGDCVNACAFDAIHINPATGIAEVDEEKCTSCGACVKACPKNII 186


>gi|296134413|ref|YP_003641660.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermincola sp. JR]
 gi|296032991|gb|ADG83759.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermincola potens JR]
          Length = 591

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V    CI CK   C+++ CP      G   ++++   C  CG+C   C V AI+ + E
Sbjct: 535 VDAGACIGCK--RCMKLGCP--ALVAGPEKVSVNAALCTGCGLCAQTCNVGAIRKEGE 588


>gi|229109610|ref|ZP_04239199.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           Rock1-15]
 gi|228673858|gb|EEL29113.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           Rock1-15]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229043903|ref|ZP_04191599.1| Respiratory nitrate reductase beta subunit [Bacillus cereus AH676]
 gi|229127563|ref|ZP_04256554.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228655909|gb|EEL11756.1| Respiratory nitrate reductase beta subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228725434|gb|EEL76695.1| Respiratory nitrate reductase beta subunit [Bacillus cereus AH676]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|150007171|ref|YP_001301914.1| ferredoxin [Parabacteroides distasonis ATCC 8503]
 gi|255015215|ref|ZP_05287341.1| ferredoxin [Bacteroides sp. 2_1_7]
 gi|256840546|ref|ZP_05546054.1| ferredoxin [Parabacteroides sp. D13]
 gi|149935595|gb|ABR42292.1| electron transport complex protein RnfB [Parabacteroides distasonis
           ATCC 8503]
 gi|256737818|gb|EEU51144.1| ferredoxin [Parabacteroides sp. D13]
          Length = 310

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 219 CIGC--GKCAKECPFEAITVTNNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 34.2 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            C  + DCV  C  D  +         +  ++C  CG C   CP + I
Sbjct: 139 GCLGYGDCVNACAFDAIHINPATGIAEVDEEKCTSCGACVKACPKNII 186


>gi|189424213|ref|YP_001951390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189420472|gb|ACD94870.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 256

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 9   CILCKHTDCVEVCPV--DCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    CV+ CPV     ++  + + + + + CI C  C+  CP  A+    E     
Sbjct: 64  CNHCSDAPCVKACPVKPKAMFKTPDGITMHNDERCIGCRRCQKACPYSAMDVAKEKAEYS 123

Query: 66  WLKIN 70
            +  N
Sbjct: 124 VISAN 128


>gi|121593503|ref|YP_985399.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120605583|gb|ABM41323.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCP                ECI CG+C   C     K     GL  +  
Sbjct: 275 CIDC--TLCVQVCPTGIDIRNGLQY-----ECIGCGLCVDACNTVMDKMKYPRGLIRFST 327

Query: 69  IN 70
            N
Sbjct: 328 QN 329


>gi|15899490|ref|NP_344095.1| ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus P2]
 gi|284174261|ref|ZP_06388230.1| ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus
          98/2]
 gi|13816112|gb|AAK42885.1| Ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus P2]
 gi|261601262|gb|ACX90865.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          solfataricus 98/2]
          Length = 89

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ C+ CK   C +VCP   +    +  + +H + C++CG     CP  AIK     G
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIVVHYERCLECGAALVACPYGAIKFHFPEG 82

Query: 63 LELW 66
             +
Sbjct: 83 GISY 86


>gi|315652725|ref|ZP_07905699.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315484927|gb|EFU75335.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 252

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + CI CK   C + C V       +      +EC  C  C   CP  AI  
Sbjct: 183 VNKDLCIGCKL--CEKKCSVGAIIMEGDHPVWKDEECEMCLGCLHRCPKFAISY 234


>gi|288958539|ref|YP_003448880.1| nitrogen fixation protein [Azospirillum sp. B510]
 gi|288910847|dbj|BAI72336.1| nitrogen fixation protein [Azospirillum sp. B510]
          Length = 514

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI CK   CV VCP          ++     CI CG+C   C     +      L  +
Sbjct: 291 CIDCK--QCVHVCPTGTDIREGQQIS-----CIGCGLCVDACNDVMAQIGRPLDLVRF 341


>gi|257789834|ref|YP_003180440.1| thiamine pyrophosphate protein domain-containing protein
           TPP-binding [Eggerthella lenta DSM 2243]
 gi|257473731|gb|ACV54051.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Eggerthella lenta DSM 2243]
          Length = 735

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 8/64 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVD 53
             V  E C  CK       CP   F                + P  C  CG+C   CP D
Sbjct: 648 AVVDAETCTGCKKCITEIGCPGIGFDADARGPRSKQRGQAFVDPSLCNGCGLCVQVCPFD 707

Query: 54  AIKP 57
           A+  
Sbjct: 708 ALSM 711


>gi|229059838|ref|ZP_04197214.1| Respiratory nitrate reductase beta subunit [Bacillus cereus AH603]
 gi|228719508|gb|EEL71110.1| Respiratory nitrate reductase beta subunit [Bacillus cereus AH603]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|229144763|ref|ZP_04273162.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           BDRD-ST24]
 gi|228638724|gb|EEK95155.1| Respiratory nitrate reductase 2 beta chain [Bacillus cereus
           BDRD-ST24]
          Length = 453

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 202


>gi|258405501|ref|YP_003198243.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfohalobium retbaense DSM 5692]
 gi|257797728|gb|ACV68665.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfohalobium retbaense DSM 5692]
          Length = 793

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 8   NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPV 52
            C  C    C+E+CP            +  +   P++CI CG C   CP 
Sbjct: 734 ACRDC--GLCIEICPQTAINRRQLSGEDFEMVADPEKCIGCGFCAQACPC 781


>gi|269955285|ref|YP_003325074.1| NADH-quinone oxidoreductase subunit I [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303966|gb|ACZ29516.1| NADH-quinone oxidoreductase, chain I [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 300

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 34/110 (30%), Gaps = 36/110 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------------NFLAIHPDECIDCG 44
           E CI C+   C   CP D  Y                             I+   CI CG
Sbjct: 65  EKCIGCEL--CAWACPADAIYVEGADNADVLAETGGGQVSPGERYGRVYQINYLRCIFCG 122

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAK 92
           +C   CP  A+    +           E A  T+   I  K++ L   A+
Sbjct: 123 LCVEACPTRALTMSNDY----------ELAGPTRAGMIYEKQDLLAPPAE 162


>gi|145541694|ref|XP_001456535.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424347|emb|CAK89138.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 29/99 (29%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP                      I   +CI CG C+  CPVDAI
Sbjct: 133 EERCIACKL--CQSACPARAITIETEPRPDNSRRTVRYDIDMTKCIYCGFCQEACPVDAI 190

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                     +                K + L +  K +
Sbjct: 191 VEGPNYEYTTY--------QHEDLFYDKFKLLENGDKWE 221


>gi|145508706|ref|XP_001440297.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|145535448|ref|XP_001453457.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407514|emb|CAK72900.1| unnamed protein product [Paramecium tetraurelia]
 gi|124421179|emb|CAK86060.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 29/99 (29%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP                      I   +CI CG C+  CPVDAI
Sbjct: 133 EERCIACKL--CQSACPARAITIETEPRPDNSRRTVRYDIDMTKCIYCGFCQEACPVDAI 190

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                     +                K + L +  K +
Sbjct: 191 VEGPNYEYTTY--------QHEDLFYDKFKLLENGDKWE 221


>gi|67906754|gb|AAY82817.1| predicted iron-sulfur cluster-binding protein [uncultured bacterium
           MedeBAC46A06]
          Length = 672

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C    C++VCP        + + I P  C  CG C   CP  A +        
Sbjct: 292 GCS--RCLDVCPAGAISVAGDTVEIDPAICGGCGYCGAVCPSGAAQTMVPAADM 343



 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + T+NC +C    CV  CP            L    D C+ CG+C   CP   I      
Sbjct: 525 IDTDNCTICL--SCVSACPAGALQDNPDAPQLLFREDACLQCGICMATCPEKVITL-VPQ 581

Query: 62  GLELWLKINSEY 73
                  +N+E 
Sbjct: 582 FNLADSAMNAEL 593


>gi|78187016|ref|YP_375059.1| ferredoxin [Chlorobium luteolum DSM 273]
 gi|78166918|gb|ABB24016.1| Electron transport complex, RnfABCDGE type, B subunit [Chlorobium
           luteolum DSM 273]
          Length = 277

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI      C+  C  +        + I  D C  CG C P CP   +    +    +++
Sbjct: 142 SCIG--LGSCIAWCDFNAMRIENGLIVIDSDLCTGCGACIPACPTGVLVMQDKKADRIFI 199

Query: 68  KIN 70
             N
Sbjct: 200 ACN 202



 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C    CV+ CP       +    I  ++C  CG C   CP
Sbjct: 218 CIAC--QKCVKECPEQAIVIEDFVARIIQEKCTSCGKCIEVCP 258


>gi|305666617|ref|YP_003862904.1| ferredoxin [Maribacter sp. HTCC2170]
 gi|88708888|gb|EAR01123.1| ferredoxin [Maribacter sp. HTCC2170]
          Length = 298

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C ++CP D      N   I PD C  C  C   CP  +I
Sbjct: 221 ACIGCSK--CEDICPKDAIDMDNNLAYIDPDLCTLCRKCVEVCPTHSI 266



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 21/76 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCP-----------------VDCFYEGENFLAIHPDE--CID 42
             ++T+ C  C    CV+ CP                 V C  E +  +A    +  CI 
Sbjct: 167 PVIITDKCTSC--GACVKACPRHILEMRPRNKRDLKIFVGCLNEDKGGIAKRACDVACIG 224

Query: 43  CGVCEPECPVDAIKPD 58
           C  CE  CP DAI  D
Sbjct: 225 CSKCEDICPKDAIDMD 240



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKP 57
            C    DCV VC  D  Y  E      I  D+C  CG C   CP   ++ 
Sbjct: 142 GCLGDGDCVNVCDFDAMYMDEKTGLPVIITDKCTSCGACVKACPRHILEM 191


>gi|329944210|ref|ZP_08292469.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328530940|gb|EGF57796.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 237

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 76  EKCIGCEL--CAWACPADAIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEAC 133

Query: 51  PVDAIKPDTE 60
           P  A+   T+
Sbjct: 134 PTRALTMSTD 143


>gi|309793439|ref|ZP_07687866.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|308123026|gb|EFO60288.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
          Length = 147

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 60  DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 115


>gi|307701294|ref|ZP_07638315.1| NADH-quinone oxidoreductase, chain I [Mobiluncus mulieris FB024-16]
 gi|307613455|gb|EFN92703.1| NADH-quinone oxidoreductase, chain I [Mobiluncus mulieris FB024-16]
          Length = 291

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 27/102 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 102 EKCIGCEL--CAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEAC 159

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESL-PSAA 91
           P  A+    +  +      N E       I  K E L P A 
Sbjct: 160 PTRALTMSNDYEIW---DDNRE-----DLIYEKDELLVPVAD 193


>gi|302344573|ref|YP_003809102.1| NIL domain protein [Desulfarculus baarsii DSM 2075]
 gi|301641186|gb|ADK86508.1| NIL domain protein [Desulfarculus baarsii DSM 2075]
          Length = 135

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M Y+  E C+ C  T CV VCP            L   P +CI C  C P C   AI
Sbjct: 78  MRYM-PEKCVHC--TACVAVCPTHALSVDPQTRELCFEPSKCIICESCIPACSYQAI 131


>gi|300821454|ref|ZP_07101601.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300951263|ref|ZP_07165114.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301303187|ref|ZP_07209313.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|300449478|gb|EFK13098.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300525957|gb|EFK47026.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300841596|gb|EFK69356.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|315257524|gb|EFU37492.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|332343392|gb|AEE56726.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 147

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 60  DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 115


>gi|301064770|ref|ZP_07205150.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441145|gb|EFK05530.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 196

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   C+  C  +  +       + I+PD+CI+C  C   CP   I+   +
Sbjct: 59  RCRHCEPAPCMAACLANAIFRDPEKETVLINPDKCINCASCAMACPYGVIRFHED 113


>gi|266623462|ref|ZP_06116397.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM
           13479]
 gi|288864757|gb|EFC97055.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM
           13479]
          Length = 203

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++CI C    C E CP  C   G     I    C+ CG+C+  CPV A+
Sbjct: 149 YFITDDCIGC--GQCTESCPQKCIAPGVP-CRIDGSHCLRCGLCQEVCPVGAV 198


>gi|228999514|ref|ZP_04159092.1| Respiratory nitrate reductase beta subunit [Bacillus mycoides
           Rock3-17]
 gi|228760225|gb|EEM09193.1| Respiratory nitrate reductase beta subunit [Bacillus mycoides
           Rock3-17]
          Length = 448

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 139 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 197


>gi|262200413|ref|YP_003271621.1| NADH-quinone oxidoreductase subunit I [Gordonia bronchialis DSM
           43247]
 gi|262083760|gb|ACY19728.1| NADH-quinone oxidoreductase, chain I [Gordonia bronchialis DSM
           43247]
          Length = 175

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 20/102 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTDDERYSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP--DTEPGLELWLKINSEYATQWPNITTKKESLPSA 90
           P  A+    D E   +    +  E       +    +  P A
Sbjct: 110 PTRALTMTNDYELADDNRADLIYEKDRLLAPMPDDAQPPPHA 151


>gi|255284411|ref|ZP_05348966.1| putative 4Fe-4S binding domain protein [Bryantella formatexigens
           DSM 14469]
 gi|255265036|gb|EET58241.1| putative 4Fe-4S binding domain protein [Bryantella formatexigens
           DSM 14469]
          Length = 259

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T+ CI C    CV++CP       +       + C  C  C   CP +AI+ 
Sbjct: 186 TDACISC--GQCVKLCPTKNIRLRDGRPV-WKNRCTHCMACICRCPAEAIEY 234


>gi|77917677|ref|YP_355492.1| Fe-S-cluster-containing hydrogenase components 1 [Pelobacter
           carbinolicus DSM 2380]
 gi|77543760|gb|ABA87322.1| Fe-S-cluster-containing hydrogenase components 1 [Pelobacter
           carbinolicus DSM 2380]
          Length = 198

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           +C  C    C+  CP            +  +P++C  C +C   CP DAI
Sbjct: 57  SCRHCDPAACLSACPAGAITRDPETDAVVQNPEKCQACAMCAMVCPFDAI 106


>gi|114330933|ref|YP_747155.1| NADH dehydrogenase subunit I [Nitrosomonas eutropha C91]
 gi|122314151|sp|Q0AHJ2|NUOI_NITEC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114307947|gb|ABI59190.1| NADH dehydrogenase subunit I [Nitrosomonas eutropha C91]
          Length = 162

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPALAITIESEQRDDGTRRTTRYDIDLIKCIFCGFCEEACPVDAI 117


>gi|333005915|gb|EGK25431.1| 4Fe-4S binding domain protein [Shigella flexneri K-272]
 gi|333018841|gb|EGK38134.1| 4Fe-4S binding domain protein [Shigella flexneri K-227]
          Length = 135

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ VCP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 48  DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 103


>gi|325264015|ref|ZP_08130748.1| iron-sulfur cluster-binding protein [Clostridium sp. D5]
 gi|324031053|gb|EGB92335.1| iron-sulfur cluster-binding protein [Clostridium sp. D5]
          Length = 175

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+   +  CV+ CP D  +  E    +  ++C  CG C   CP   I+       + +++
Sbjct: 48  CMG--YGTCVKACPFDAIHIVEGIAVVDKEKCKACGKCIAACPKHLIELI-PYDQKTFVQ 104

Query: 69  IN 70
            N
Sbjct: 105 CN 106



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C+   C + C  D          I   +C +CGVC  +CP   I P   P
Sbjct: 122 CIGCRL--CEKNCETDAITVTNFLAHIDASKCTNCGVCADKCPRKIIIPRKIP 172


>gi|310778436|ref|YP_003966769.1| NAD-dependent formate dehydrogenase catalytic subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747759|gb|ADO82421.1| NAD-dependent formate dehydrogenase catalytic subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 890

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 4   VVTENCILCKHTDCVEVC------------PVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           + +  CI C    CV+VC            PV         + I    C  CG C   CP
Sbjct: 139 IDSNKCISC--GKCVKVCETLQCNNVLKLDPVTKKVLVSEGVKIDESNCAFCGNCVSVCP 196

Query: 52  VDAIKPDTEPGLELW 66
           V A++P  +     W
Sbjct: 197 VGALQPKEKTRFRKW 211


>gi|255322915|ref|ZP_05364055.1| sulfur reductase FeS subunit [Campylobacter showae RM3277]
 gi|255300027|gb|EET79304.1| sulfur reductase FeS subunit [Campylobacter showae RM3277]
          Length = 189

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C++C+   CV VCP    ++    +  +    C+ C  C   CP DA   +
Sbjct: 58  SCVMCEDAPCVTVCPTGASFQTAEGIVLLDHSTCVSCKYCILACPYDARYVE 109


>gi|146292947|ref|YP_001183371.1| electron transport complex protein RnfB [Shewanella putrefaciens
           CN-32]
 gi|145564637|gb|ABP75572.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           putrefaciens CN-32]
 gi|319426524|gb|ADV54598.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           putrefaciens 200]
          Length = 199

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDM 161


>gi|145536107|ref|XP_001453781.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421514|emb|CAK86384.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 29/99 (29%), Gaps = 20/99 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C   CP                      I   +CI CG C+  CPVDAI
Sbjct: 133 EERCIACKL--CQSACPARAITIETEPRPDNSRRTVRYDIDMTKCIYCGFCQEACPVDAI 190

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                     +                K + L +  K +
Sbjct: 191 VEGPNYEYTTY--------QHEDLFYDKFKLLENGDKWE 221


>gi|78042764|ref|YP_359399.1| aldo/keto reductase family oxidoreductase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994879|gb|ABB13778.1| oxidoreductase, aldo/keto reductase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 317

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +   C  C    CV+VC       G      ++ ++C+ CG C   CP  AI
Sbjct: 265 IESWCQGC--GRCVKVCSQKALTLGPKGKVRVNQEKCLFCGYCGAHCPHFAI 314


>gi|88798322|ref|ZP_01113908.1| probable ferredoxin [Reinekea sp. MED297]
 gi|88779098|gb|EAR10287.1| probable ferredoxin [Reinekea sp. MED297]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C  C   C     K     GL  +  
Sbjct: 264 CIDCDL--CVQVCPTGIDIRDGLQY-----ECIGCAACVDACDSVMEKMGYPKGLVRYTT 316

Query: 69  INS 71
            N+
Sbjct: 317 ENA 319


>gi|120598968|ref|YP_963542.1| electron transport complex protein RnfB [Shewanella sp. W3-18-1]
 gi|120559061|gb|ABM24988.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. W3-18-1]
          Length = 199

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDM 161


>gi|317059515|ref|ZP_07924000.1| electron transport complex [Fusobacterium sp. 3_1_5R]
 gi|313685191|gb|EFS22026.1| electron transport complex [Fusobacterium sp. 3_1_5R]
          Length = 316

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 221 ACIGC--GMCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 267



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
            C  + DC  VCPV      E  + ++  + CI CG+C   CP   I  
Sbjct: 146 GCLGYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVIAM 194



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAI--------------HPDECIDCGVCE 47
           V  E CI C    CV+ CP  V         + +                  CI CG+C+
Sbjct: 172 VDEEACISC--GLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 229

Query: 48  PECPVDAI 55
             CP  AI
Sbjct: 230 RTCPFGAI 237


>gi|291279828|ref|YP_003496663.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
 gi|290754530|dbj|BAI80907.1| molybdopterin oxidoreductase, 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
          Length = 246

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDC-GVCEPECPVDAIKPD 58
           C+ C +  C++ CP    Y+ E+ +  I   +C  C G     CP  AI  D
Sbjct: 80  CMQCDNAPCIKACPSGAIYKREDGIVAIDYSKCQSCGGAAANACPYSAISVD 131


>gi|227874592|ref|ZP_03992755.1| NADH dehydrogenase subunit I [Mobiluncus mulieris ATCC 35243]
 gi|227844801|gb|EEJ54947.1| NADH dehydrogenase subunit I [Mobiluncus mulieris ATCC 35243]
          Length = 291

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 27/102 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 102 EKCIGCEL--CAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEAC 159

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESL-PSAA 91
           P  A+    +  +      N E       I  K E L P A 
Sbjct: 160 PTRALTMSNDYEIW---DDNRE-----DLIYEKDELLVPVAD 193


>gi|217970164|ref|YP_002355398.1| NADH dehydrogenase subunit I [Thauera sp. MZ1T]
 gi|217507491|gb|ACK54502.1| NADH-quinone oxidoreductase, chain I [Thauera sp. MZ1T]
          Length = 161

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG CE  CPVDAI
Sbjct: 59  EERCIACKL--CEAICPAMAITIESDQRDDGSRRTTRYDIDLTKCIFCGFCEEACPVDAI 116


>gi|225019560|ref|ZP_03708752.1| hypothetical protein CLOSTMETH_03513 [Clostridium methylpentosum
           DSM 5476]
 gi|224947617|gb|EEG28826.1| hypothetical protein CLOSTMETH_03513 [Clostridium methylpentosum
           DSM 5476]
          Length = 591

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI CK       CP      G    AI P  C  C +C   CP  AI
Sbjct: 535 VDKDRCIGCKKCIRELGCPALVLEGG--KAAIEPSLCYGCSICAQVCPCGAI 584


>gi|218782788|ref|YP_002434106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764172|gb|ACL06638.1| MvH Hase/Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1021

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECIDCGVCEPECPVDAI 55
           VTE+C  C    CV+VCP       E           + + P  C  CGVC   CP D +
Sbjct: 938 VTEHCDGC--ALCVDVCPYRAIRLQESTGEDGRMHRMIQVDPALCKGCGVCAATCPKDGV 995

Query: 56  KPD 58
           +  
Sbjct: 996 RVH 998



 Score = 41.5 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 25/81 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECID-- 42
           YV  + CI C    C E CP     E    +                  AI P+ CI   
Sbjct: 104 YVDMDKCIAC--GLCAEKCPRPVADEFNEGVNNRKAIYIKYGQSVPLKYAIDPNACIYLT 161

Query: 43  ---CGVCEPECPVDAIKPDTE 60
              C  CE  CP  AI  + +
Sbjct: 162 RGKCRACEKFCPTGAINFEDK 182


>gi|182626227|ref|ZP_02953985.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens D str. JGS1721]
 gi|177908491|gb|EDT71024.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens D str. JGS1721]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP +      N   I  ++C  CG+C  +CP  AI 
Sbjct: 219 CIGCKL--CEKNCPSEAIRVENNLAIIDYEKCTSCGICVSKCPKKAIN 264


>gi|168212642|ref|ZP_02638267.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens CPE str. F4969]
 gi|170715827|gb|EDT28009.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens CPE str. F4969]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + CI C    C++VCP++     ++   I+  ECI C  C  ECPV A+
Sbjct: 225 EDKCIKC--GKCLKVCPMNVEVNKDSRKRINATECILCYECVKECPVKAL 272


>gi|168204376|ref|ZP_02630381.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens E str. JGS1987]
 gi|170664130|gb|EDT16813.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens E str. JGS1987]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + CI C    C++VCP++     ++   I+  ECI C  C  ECPV A+
Sbjct: 225 EDKCIKC--GKCLKVCPMNVEVNKDSRKRINATECILCYECVKECPVKAL 272


>gi|90412211|ref|ZP_01220217.1| anaerobic sulfite reductase subunit C [Photobacterium profundum
           3TCK]
 gi|90326935|gb|EAS43320.1| anaerobic sulfite reductase subunit C [Photobacterium profundum
           3TCK]
          Length = 335

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +E CI C    CV+VC     +C             +CI CG C   CP  A      P 
Sbjct: 177 SERCIGC--GACVKVCSQHAANCLSIKHGKATKEVSKCIGCGECVLACPTLA--WQRNPK 232

Query: 63  LELWLKINSEYATQWPNI 80
               +K+    + + P +
Sbjct: 233 QLYMVKLGGRTSKRTPRV 250


>gi|150391562|ref|YP_001321611.1| glycyl-radical activating family protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951424|gb|ABR49952.1| glycyl-radical enzyme activating protein family [Alkaliphilus
           metalliredigens QYMF]
          Length = 315

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV VCPV           I   + CI C  CE EC  +AI    E  
Sbjct: 64  CSRC--QTCVAVCPVGIHSAQGGKHLIDRSKTCIGCRKCEEECQKNAISIMGEDK 116


>gi|329955641|ref|ZP_08296549.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328526044|gb|EGF53068.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 277

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C +  C   CP     +G+       ++CI C  C   CP  A   DT 
Sbjct: 205 VDAELCNHCGY--CAAHCPAGAIAKGDECNT-DAEKCIRCCACVKGCPQKARTFDTP 258


>gi|302387080|ref|YP_003822902.1| Dinitrogenase iron-molybdenum cofactor biosynthesis protein
           [Clostridium saccharolyticum WM1]
 gi|302197708|gb|ADL05279.1| Dinitrogenase iron-molybdenum cofactor biosynthesis protein
           [Clostridium saccharolyticum WM1]
          Length = 416

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C+   C EVC             I    C  CG C+  CP +AI    E   +++L
Sbjct: 67  CINCE--ICEEVCKFGAIKNC----TIDLFSCEGCGACKVVCPQNAISLVEEKTADVFL 119


>gi|291228641|ref|XP_002734288.1| PREDICTED: ATP-binding cassette, sub-family E, member 1-like
          [Saccoglossus kowalevskii]
          Length = 488

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C + CPV             +    I  + CI CG+C  +CP +A
Sbjct: 12 VSTDKCKPKRCR-QECKKSCPVVRMGKLCIEVTSNDKIAYISEELCIGCGICAKKCPFEA 70

Query: 55 I 55
          I
Sbjct: 71 I 71



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE 28
           Y+  E CI C    C + CP +    
Sbjct: 49 AYISEELCIGC--GICAKKCPFEAISI 73


>gi|317152757|ref|YP_004120805.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943008|gb|ADU62059.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 352

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C +  C  +CP     +  N L  I+   C+    C   CP  
Sbjct: 130 IPRRCMHCVNPPCANMCPFGAANKQANGLTRINDSLCLGGAKCRTVCPWH 179


>gi|228993477|ref|ZP_04153387.1| Respiratory nitrate reductase 2 beta chain [Bacillus pseudomycoides
           DSM 12442]
 gi|228766299|gb|EEM14943.1| Respiratory nitrate reductase 2 beta chain [Bacillus pseudomycoides
           DSM 12442]
          Length = 448

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 139 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 197


>gi|228470502|ref|ZP_04055369.1| ferredoxin [Porphyromonas uenonis 60-3]
 gi|228307798|gb|EEK16754.1| ferredoxin [Porphyromonas uenonis 60-3]
          Length = 319

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C +VCP +      N   I   +C  C  C  ECP  AI 
Sbjct: 219 ACIGCSK--CFKVCPFEAITFENNLAYIDHQKCRLCRKCAAECPTGAIH 265



 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
            C  + DCV VC  D  +         +  D+C  CG C   CP   I
Sbjct: 140 GCLGNGDCVAVCDFDAIHMNPETGLPEVDEDKCTACGACVKACPKMII 187


>gi|254284151|ref|ZP_04959119.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR51-B]
 gi|219680354|gb|EED36703.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR51-B]
          Length = 200

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 114 AYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIVDECTGCDLCVEPCPVDCIDM 168


>gi|83590228|ref|YP_430237.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573142|gb|ABC19694.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 182

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           Y ++  C  C++ +C  VCP   + +  + +   +   C  C  C   CP  A
Sbjct: 49  YYLSLACNHCENPECFRVCPARAYNKRRDGIVLHNSGRCSGCNRCVRACPFGA 101


>gi|78355699|ref|YP_387148.1| hypothetical protein Dde_0652 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218104|gb|ABB37453.1| hypothetical protein Dde_0652 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 367

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C   C V  F +  +  +  +P  C+ C  C   CP +    +     +  +
Sbjct: 108 CNHCLEPACASACFVKAFTKNPDGSVTYNPKLCVGCRYCMIACPFNVPAFEYGEAYDPLI 167


>gi|14590561|ref|NP_142629.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus horikoshii OT3]
 gi|6686092|sp|O58412|VORD_PYRHO RecName: Full=Ketoisovalerate oxidoreductase subunit vorD;
           Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin
           reductase subunit delta; AltName: Full=2-oxoisovalerate
           oxidoreductase delta chain
 gi|3257087|dbj|BAA29770.1| 105aa long hypothetical ferredoxin oxidoreductase delta subunit
           [Pyrococcus horikoshii OT3]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M  +    C+ C    C + CP    Y  E+    I  D C  CG+C  ECP  AI    
Sbjct: 45  MPVIDESKCVKCY--ICWKYCPEPAIYIKEDGFVAIDYDYCKGCGICANECPTKAITMVR 102

Query: 60  EPG 62
           E  
Sbjct: 103 EEK 105


>gi|67643798|ref|ZP_00442541.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei GB8 horse 4]
 gi|121599061|ref|YP_992363.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124385577|ref|YP_001026832.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126451277|ref|YP_001079881.1| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|126453295|ref|YP_001065463.1| ferredoxin [Burkholderia pseudomallei 1106a]
 gi|166999900|ref|ZP_02265729.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei PRL-20]
 gi|242316966|ref|ZP_04815982.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|254175604|ref|ZP_04882264.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei ATCC 10399]
 gi|254207541|ref|ZP_04913891.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei JHU]
 gi|254258562|ref|ZP_04949616.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1710a]
 gi|254359954|ref|ZP_04976224.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei 2002721280]
 gi|121227871|gb|ABM50389.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei SAVP1]
 gi|124293597|gb|ABN02866.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei NCTC 10229]
 gi|126226937|gb|ABN90477.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106a]
 gi|126244147|gb|ABO07240.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei NCTC 10247]
 gi|147751435|gb|EDK58502.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei JHU]
 gi|148029194|gb|EDK87099.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei 2002721280]
 gi|160696648|gb|EDP86618.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei ATCC 10399]
 gi|238525236|gb|EEP88664.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242140205|gb|EES26607.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|243064025|gb|EES46211.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei PRL-20]
 gi|254217251|gb|EET06635.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1710a]
          Length = 290

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|71900626|ref|ZP_00682752.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|71729620|gb|EAO31725.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
          Length = 139

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            +++  +CI C  T C++ CPVD    G ++   +    C  C +C P CPV+ I
Sbjct: 82  AWIIEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVECI 134


>gi|323702954|ref|ZP_08114611.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfotomaculum nigrificans DSM 574]
 gi|323532085|gb|EGB21967.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfotomaculum nigrificans DSM 574]
          Length = 1482

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDA 54
            V TE C  C    CVE C        E      +    C  CG C   CP  A
Sbjct: 1412 VDTELCKGC--GICVEACAYGARVLDERRGVALVREVLCQGCGACVAACPSGA 1462


>gi|322381258|ref|ZP_08055261.1| nitrate reductase beta subunit-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154834|gb|EFX47105.1| nitrate reductase beta subunit-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 451

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 143 CEHCINPACVSSCPSGAMYKRDEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 201


>gi|301156226|emb|CBW15697.1| predicted iron-sulfur protein [Haemophilus parainfluenzae T3T1]
          Length = 197

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I PD C  C +C   CP D I  
Sbjct: 102 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCISM 156



 Score = 34.2 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           M  ++ + C  C+   CV  CP DC    +    I   
Sbjct: 131 MHTIIPDLCTGCEL--CVAPCPTDCISMIKVKKDIDNW 166


>gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 624

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           Y+V  NC  C    C++ CP D          + +  D+C  CG C   C ++A+
Sbjct: 569 YIVEANCNGCSL--CIKECPADAISFQGKKQPVKLDQDKCTKCGACYDICRLNAV 621


>gi|254786925|ref|YP_003074354.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
 gi|237685549|gb|ACR12813.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
          Length = 200

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I+ 
Sbjct: 115 AFIREDECIGC--TKCIQACPVDAILGAAKQMHTVIGSECTGCDLCVEPCPVDCIEM 169


>gi|153953475|ref|YP_001394240.1| Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
 gi|146346356|gb|EDK32892.1| Predicted Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
          Length = 457

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP-VDAIKPD 58
          M  +  E C  C+   C +VCPVD     +     I  ++CI CG C   C    +I  D
Sbjct: 1  MINIDRELCTGCR--RCADVCPVDAIGGNKGEPQAIDMEKCIMCGQCIQICKGYYSIYDD 58


>gi|5734543|emb|CAB52772.1| polyferredoxin [Methanothermobacter thermautotrophicus]
          Length = 441

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
          E C  C    C+  CPVD  +   +       D C  C +C   CP DAI+ 
Sbjct: 16 EKCRNCPDKPCLNACPVDAVHIDPDTGEVEIDDRCFGCVLCREACPYDAIRM 67



 Score = 41.9 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + C  C    C E CP D             EN   I+P  C  CG C   C   AI 
Sbjct: 46  IDDRCFGCVL--CREACPYDAIRMKTILGEPVRENVPVINPRICRGCGACVSACRTGAIH 103



 Score = 38.4 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E CI C    CV  CPV              D C+ CG C   CPVDA+
Sbjct: 303 VLEERCIGC--GLCVTECPVGVIEPVTPAPVEIKDGCVFCGRCRGVCPVDAV 352



 Score = 38.0 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  C     +     +      I  D+C+ CG C   CP +AIK 
Sbjct: 87  CRGC--GACVSACRTGAIHLTSSGKTGVHSEIDEDKCVRCGYCARACPTEAIKY 138



 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECP 51
           +  + C+ C +  C   CP +    GE           + ++  +CI C  C   CP
Sbjct: 116 IDEDKCVRCGY--CARACPTEAIKYGEILPRSVVGRKAVVVNQRDCIGCMTCTRVCP 170



 Score = 37.3 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CPVD        + +  D CI CG C+  CPV A+K + E  
Sbjct: 388 CQRC--GVCVNHCPVDAMAMDGE-VEVDDDTCILCGECQDICPVTAVKLNLEDD 438



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 2   TYVVTEN-CILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             VV +  CI C    C  VCP        +      I P  C  C  C   CP  AIK 
Sbjct: 151 AVVVNQRDCIGC--MTCTRVCPSRGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAIKY 208

Query: 58  DT-EPGLELWLKIN 70
            + +   E + K+N
Sbjct: 209 SSRKRAYENFSKLN 222


>gi|319948400|ref|ZP_08022541.1| nitrate reductase (beta subunit) [Dietzia cinnamea P4]
 gi|319437954|gb|EFV92933.1| nitrate reductase (beta subunit) [Dietzia cinnamea P4]
          Length = 550

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C   CP    Y+   +  + +  D+C     C   CP   +  
Sbjct: 182 CEHCLNPSCAASCPSGAIYKRVEDGVVLVDQDKCRGWRQCITGCPYKKVYF 232


>gi|313112714|ref|ZP_07798363.1| ferredoxin [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624970|gb|EFQ08276.1| ferredoxin [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 55

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV          +++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGC--GACEGACPVGAITVDGV-ASVNADACIDCGACEGACPTGAITAE 55


>gi|308271997|emb|CBX28605.1| Protein DVU_0535 [uncultured Desulfobacterium sp.]
          Length = 311

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    C   C V  F + +       P+ C+ C  C   CP +    +    LE 
Sbjct: 110 CNHCLEPACASACFVRAFKKTKTGAVTYDPNVCVGCRYCMIACPFEIPAYEYNKALEP 167


>gi|307718964|ref|YP_003874496.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM
           6192]
 gi|306532689|gb|ADN02223.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM
           6192]
          Length = 289

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVC--PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    CV+VC           N   I P +CI CG C  ECP  AI
Sbjct: 223 ACIGC--GKCVKVCETVTQAITLEHNLAYIDPVKCIACGKCVAECPTGAI 270



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
            C  + DC E CP D            +  ++C  CGVC   CP +
Sbjct: 144 GCLHYGDCAEACPFDAISMDPVTGLPVVDEEKCTACGVCVEVCPRN 189


>gi|288929911|ref|ZP_06423753.1| conserved hypothetical protein [Prevotella sp. oral taxon 317
          str. F0108]
 gi|288328730|gb|EFC67319.1| conserved hypothetical protein [Prevotella sp. oral taxon 317
          str. F0108]
          Length = 55

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++CI C    C+  CPV+   EG+    I  D C +CG C   CP +AI
Sbjct: 1  MAYVISDDCIAC--GTCLPECPVEAISEGD-IYKIDADACTECGTCASVCPSEAI 52


>gi|283795022|ref|YP_003359413.1| NADH dehydrogenase 18 kDa subunit [Olea europaea]
 gi|281428741|gb|ADA69980.1| NADH dehydrogenase 18 kDa subunit [Olea europaea]
          Length = 168

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 13/68 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP   +
Sbjct: 59  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPNKIV 116

Query: 56  KPDTEPGL 63
              TE   
Sbjct: 117 YQMTEEYE 124


>gi|269977608|ref|ZP_06184575.1| NADH-quinone oxidoreductase subunits h/i [Mobiluncus mulieris 28-1]
 gi|269934211|gb|EEZ90778.1| NADH-quinone oxidoreductase subunits h/i [Mobiluncus mulieris 28-1]
          Length = 291

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 27/102 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 102 EKCIGCEL--CAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEAC 159

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESL-PSAA 91
           P  A+    +  +      N E       I  K E L P A 
Sbjct: 160 PTRALTMSNDYEIW---DDNRE-----DLIYEKDELLVPVAD 193


>gi|297569257|ref|YP_003690601.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfurivibrio alkaliphilus AHT2]
 gi|296925172|gb|ADH85982.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfurivibrio alkaliphilus AHT2]
          Length = 402

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  +  E CI C    C + C        +    +  D C  CG C   C V A+
Sbjct: 1  MLKIDAEACIGC--GLCEDACTFGAIQVEDGLAVV-GDNCTLCGACVEVCEVGAL 52



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           L I  + CI CG+CE  C   AI+ + 
Sbjct: 1  MLKIDAEACIGCGLCEDACTFGAIQVED 28


>gi|223007077|gb|ACM77777.1| nitrite oxidoreductase [uncultured bacterium]
          Length = 138

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   +  + I+ D C     C   C       + 
Sbjct: 86  CNHCLNPCCVASCPSGALYKRGEDGIVLINQDRCRAWRSCVSACLYKKTYFNW 138


>gi|222055882|ref|YP_002538244.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sp. FRC-32]
 gi|221565171|gb|ACM21143.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sp. FRC-32]
          Length = 584

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C+   C+++ CP   +    E +    I P  C  C +CE  C  +AI
Sbjct: 527 VDLELCTGCR--ACLKLGCPAIIWQAEGEKKGKATIDPQLCTGCTICEQVCKFNAI 580


>gi|188997091|ref|YP_001931342.1| DMSO reductase family type II enzyme, iron-sulfur subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932158|gb|ACD66788.1| DMSO reductase family type II enzyme, iron-sulfur subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 382

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           + +   C  C +  C+  CP +  ++ E    + +  + C     C   CP   I  
Sbjct: 124 FYIPRICNHCSNPGCLAACPREAIFKREQDGIVLVDLERCQGYRYCIAGCPYKKIYF 180


>gi|169335902|ref|ZP_02863095.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258640|gb|EDS72606.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM
           17244]
          Length = 202

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + E CI CK   C  +CP    YE    + I  + C+ CG+C   CPV A+
Sbjct: 149 YFINETCINCKK--CFNLCPQSAIYELNGIMNIKNENCLHCGLCYENCPVKAV 199


>gi|164427329|ref|XP_963869.2| hypothetical protein NCU03061 [Neurospora crassa OR74A]
 gi|157071697|gb|EAA34633.2| hypothetical protein NCU03061 [Neurospora crassa OR74A]
          Length = 605

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-----DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V ++ C    C+  +C + CPV      C         I    CI CG+C   CP  AI
Sbjct: 11 VSSDKCKPKKCR-QECKKSCPVVRSGKLCVSPESRIAFISEQLCIGCGICPKRCPFGAI 68


>gi|332528159|ref|ZP_08404190.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332112730|gb|EGJ12523.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTD-CVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C   D C  VCP +   +      A+  D C  CG+C  ECP  AI    E
Sbjct: 485 SCGNCLQCDNCYGVCPDNAVKKLAPGRYAVDYDYCKGCGLCAVECPCGAIDMVAE 539


>gi|325067546|ref|ZP_08126219.1| NADH-quinone oxidoreductase, chain I [Actinomyces oris K20]
          Length = 235

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 75  EKCIGCEL--CAWACPADAIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEAC 132

Query: 51  PVDAIKPDTE 60
           P  A+   T+
Sbjct: 133 PTRALTMSTD 142


>gi|320354001|ref|YP_004195340.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122503|gb|ADW18049.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 266

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    C   C V           + HPD C+ C  C   CP +  K + +     
Sbjct: 73  CLHCVDPACASSCLVGALRRTPEGPVVYHPDLCVGCRYCMVACPFNIPKYEWDKSFPK 130


>gi|319763994|ref|YP_004127931.1| cytochrome c oxidase accessory protein ccog [Alicycliphilus
           denitrificans BC]
 gi|330823742|ref|YP_004387045.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans K601]
 gi|317118555|gb|ADV01044.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans BC]
 gi|329309114|gb|AEB83529.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans K601]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCP                ECI CG+C   C     K     GL  +  
Sbjct: 275 CIDC--TLCVQVCPTGIDIRNGLQY-----ECIGCGLCVDACDTVMDKMKYPRGLIRFST 327

Query: 69  IN 70
            N
Sbjct: 328 QN 329


>gi|242241403|ref|YP_002989584.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
 gi|242133460|gb|ACS87762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 176

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP D      + + +     I C  C   CP  AI
Sbjct: 57  CHQCENAPCASVCPHDALIRHRDSIQVIQSRWIGCKSCVIACPFGAI 103


>gi|296125465|ref|YP_003632717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
           murdochii DSM 12563]
 gi|296017281|gb|ADG70518.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
           murdochii DSM 12563]
          Length = 256

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  CK   C + CPV         + I   +CI C  C   C   A
Sbjct: 184 KCTNCKL--CAKKCPVQAIDINNPKI-IDKTKCISCMRCVHICHCSA 227


>gi|57641914|ref|YP_184392.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermococcus kodakarensis KOD1]
 gi|57160238|dbj|BAD86168.1| 2-oxoisovalerate:ferredoxin oxidoreductase, delta subunit
           [Thermococcus kodakarensis KOD1]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + C+ C    C + CP    Y   +    I  D C  CG+C  ECP  AI  + E
Sbjct: 46  PVVNEDKCVKCY--ICWKFCPEPAIYIKPDGYVAIDYDYCKGCGICANECPTKAITMEKE 103

Query: 61  PG 62
             
Sbjct: 104 EK 105


>gi|220931026|ref|YP_002507934.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
 gi|219992336|gb|ACL68939.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
          Length = 584

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGLELWL 67
          C  C    CV  CPV      +   +I  + C+  G C   CP  A +   + P ++ WL
Sbjct: 11 CQDCYK--CVRFCPVKAIKIKDGHASIIGERCLGDGGCVEICPQKAKEVRQDWPVVKDWL 68

Query: 68 KINSE 72
          +   E
Sbjct: 69 EKGEE 73


>gi|332702757|ref|ZP_08422845.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552906|gb|EGJ49950.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 166

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C+   CV  CP       +    + ++ + C+ C  C   CP    + D 
Sbjct: 58  PCFHCEQPWCVAACPTGAMTRRDKDGIVYVNAELCVGCKACIVACPWKIPQWDE 111


>gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528]
 gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528]
          Length = 599

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C + CP DC   E +    I  D+C+ CG C   C  DA+
Sbjct: 546 IDEDKCKGCDM--CKKNCPADCITGEIKKPHTIDADKCLRCGNCMNICKFDAV 596


>gi|291613546|ref|YP_003523703.1| NADH-quinone oxidoreductase, chain I [Sideroxydans lithotrophicus
           ES-1]
 gi|291583658|gb|ADE11316.1| NADH-quinone oxidoreductase, chain I [Sideroxydans lithotrophicus
           ES-1]
          Length = 162

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 60  EERCIGCKL--CEAVCPALAIKIEVAEREDGTRRTTRYDIDLVKCIFCGFCEESCPVDAI 117


>gi|221632494|ref|YP_002521715.1| oxidoreductase, iron-sulfur cluster-binding subunit
           [Thermomicrobium roseum DSM 5159]
 gi|221156949|gb|ACM06076.1| oxidoreductase, iron-sulfur cluster-binding subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 241

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPD-TEPG 62
           +   C+ C +  C  VCPV   Y     + +   + CI    C   C       +  EP 
Sbjct: 64  IPVPCMQCTNAPCEPVCPVYATYHTNEGINMQVYNRCIGTRYCAVNCHWHVRFFNFWEPK 123

Query: 63  LELWLK 68
               LK
Sbjct: 124 WPDSLK 129



 Score = 33.8 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 31 NFLAIHPDECIDCGVCEPECP---VDAIKPDTEPGLE---LWLKINSEYATQWPNITTKK 84
            + I  D CI CG C   C       I  +          W+++   +  ++PNI  + 
Sbjct: 4  WGMVIDLDRCIGCGACVVACQAENNVPINTEDVYHQRRAIAWIRLERYWEGEYPNIKARY 63

Query: 85 ESLP 88
            +P
Sbjct: 64 IPVP 67


>gi|206890889|ref|YP_002248948.1| NADH-quinone oxidoreductase, chain i subfamily, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742827|gb|ACI21884.1| NADH-quinone oxidoreductase, chain i subfamily, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 187

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 13/61 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-----------NFLAIHPDECIDCGVCEPECPVDA 54
            E C+ C  T C +VCP  C Y                  I    CI CG CE  CPV+A
Sbjct: 58  KERCVAC--TKCAQVCPSQCIYIDYSINPETGARVLTKYEIDALRCIFCGYCEEVCPVNA 115

Query: 55  I 55
           I
Sbjct: 116 I 116


>gi|254167532|ref|ZP_04874384.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|197623795|gb|EDY36358.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
          Length = 62

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V    C  C    CV  CPV+C +  E  + I  D+CI CG C   CPV AI  D 
Sbjct: 3  MMNVDPAVCNYC--GACVGSCPVNCMFLDETIVRIDEDKCIKCGFCIRACPVGAISADW 59


>gi|215484255|ref|YP_002326482.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii AB307-0294]
 gi|260555960|ref|ZP_05828180.1| electron transport complex [Acinetobacter baumannii ATCC 19606]
 gi|332853651|ref|ZP_08434881.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013150]
 gi|332870830|ref|ZP_08439475.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013113]
 gi|193076747|gb|ABO11457.2| putative iron-sulfur protein [Acinetobacter baumannii ATCC 17978]
 gi|213987984|gb|ACJ58283.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii AB307-0294]
 gi|260410871|gb|EEX04169.1| electron transport complex [Acinetobacter baumannii ATCC 19606]
 gi|332728475|gb|EGJ59849.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013150]
 gi|332731931|gb|EGJ63209.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013113]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 89  EDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|50084303|ref|YP_045813.1| putative iron-sulfur protein [Acinetobacter sp. ADP1]
 gi|49530279|emb|CAG67991.1| conserved hypothetical protein; putative iron-sulfur protein
           [Acinetobacter sp. ADP1]
          Length = 250

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPGL 63
            + CI C  T C+  CPVD     G+    +  D C  C +C P CPVD I   +    L
Sbjct: 75  EDECIGC--TKCISACPVDAIIGSGKLMHTVLTDLCTGCELCIPPCPVDCIDLVEDREPL 132

Query: 64  ELWLKINSE 72
               + N+E
Sbjct: 133 PTIAERNNE 141


>gi|27366362|ref|NP_761890.1| electron transport complex protein RnfB [Vibrio vulnificus CMCP6]
 gi|37679375|ref|NP_933984.1| electron transport complex protein RnfB [Vibrio vulnificus YJ016]
 gi|320156873|ref|YP_004189252.1| electron transport complex protein RnfB [Vibrio vulnificus
           MO6-24/O]
 gi|33301651|sp|Q8D889|RNFB_VIBVU RecName: Full=Electron transport complex protein rnfB
 gi|71153697|sp|Q7MM82|RNFB_VIBVY RecName: Full=Electron transport complex protein rnfB
 gi|27362563|gb|AAO11417.1| Electron transport complex protein rnfB [Vibrio vulnificus CMCP6]
 gi|37198118|dbj|BAC93955.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Vibrio
           vulnificus YJ016]
 gi|319932185|gb|ADV87049.1| electron transport complex protein RnfB [Vibrio vulnificus
           MO6-24/O]
          Length = 198

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPL 164

Query: 58  DTEPGLELWLKINS 71
           +T      W ++N+
Sbjct: 165 ETTTETWKW-QLNA 177


>gi|262279872|ref|ZP_06057657.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260223|gb|EEY78956.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 89  EDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|237729679|ref|ZP_04560160.1| formate hydrogenlyase subunit 2 [Citrobacter sp. 30_2]
 gi|226908285|gb|EEH94203.1| formate hydrogenlyase subunit 2 [Citrobacter sp. 30_2]
          Length = 203

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 51 CHQCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|226330215|ref|ZP_03805733.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198]
 gi|225201010|gb|EEG83364.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198]
          Length = 208

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
             +  +NCI C  T C++ CPVD           +  D C  C +C P CP D I
Sbjct: 110 ALIDEDNCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVPPCPTDCI 162


>gi|91789108|ref|YP_550060.1| NADH dehydrogenase subunit I [Polaromonas sp. JS666]
 gi|123164661|sp|Q127Y0|NUOI_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91698333|gb|ABE45162.1| NADH dehydrogenase subunit I [Polaromonas sp. JS666]
          Length = 165

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                  +   I   +CI CG CE  CPVDAI
Sbjct: 63  EERCIACKL--CEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEEACPVDAI 120


>gi|91775203|ref|YP_544959.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacillus flagellatus KT]
 gi|91775347|ref|YP_545103.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacillus flagellatus KT]
 gi|91709190|gb|ABE49118.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacillus flagellatus KT]
 gi|91709334|gb|ABE49262.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacillus flagellatus KT]
          Length = 216

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C++ CPVD      +    +  DEC  C +C   CP++ I     
Sbjct: 77  AVIDEARCIGC--TLCIKACPVDAILGAHKQMHTVIADECTGCELCLVPCPMECIDM-VP 133

Query: 61  PGLELW 66
              + W
Sbjct: 134 LIEQDW 139


>gi|89897237|ref|YP_520724.1| hypothetical protein DSY4491 [Desulfitobacterium hafniense Y51]
 gi|219666893|ref|YP_002457328.1| hypothetical protein Dhaf_0829 [Desulfitobacterium hafniense DCB-2]
 gi|89336685|dbj|BAE86280.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537153|gb|ACL18892.1| protein of unknown function DUF362 [Desulfitobacterium hafniense
           DCB-2]
          Length = 382

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C+ C   DCV+ CP       +     I  + CI C  C+  CP  A++    
Sbjct: 322 DQCVGC--ADCVKNCPPQALRLNDQKRPEIDLEACIRCFCCQELCPHQAVEISKP 374


>gi|327400998|ref|YP_004341837.1| CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon
           [Archaeoglobus veneficus SNP6]
 gi|327316506|gb|AEA47122.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
           [Archaeoglobus veneficus SNP6]
          Length = 230

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 4   VVTENCILCKHTDCVEVCPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +  + C  C   DCV  C               L + P+ CI CG+C   C  DAI  + 
Sbjct: 157 IDEDRCSGC--GDCVAACKTMSRGAALSVVLGKLVVRPELCIACGMCAEFCSRDAIGLER 214

Query: 60  EPG 62
              
Sbjct: 215 GER 217


>gi|325958243|ref|YP_004289709.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanobacterium sp. AL-21]
 gi|325329675|gb|ADZ08737.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanobacterium sp. AL-21]
          Length = 143

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          C+ C      C+ VCP D   E +  + I  D CI CG+C   CP+ AI  D     + 
Sbjct: 36 CLHCAKDRAPCMTVCPEDAIVEIDGAIVIMEDSCIGCGLCRDSCPIGAIHMDEYGIAKK 94


>gi|319940750|ref|ZP_08015091.1| hydrogenase [Sutterella wadsworthensis 3_1_45B]
 gi|319805810|gb|EFW02584.1| hydrogenase [Sutterella wadsworthensis 3_1_45B]
          Length = 456

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          ++  ++C+ C    C + CP D    G      I  D C+ CG C   CP +AI+  +
Sbjct: 39 HINKDHCVGCD--TCRKFCPTDAIKGGLGAKHEIIDDACLYCGQCLVACPFNAIEQMS 94


>gi|315609074|ref|ZP_07884044.1| ferredoxin [Prevotella buccae ATCC 33574]
 gi|315249278|gb|EFU29297.1| ferredoxin [Prevotella buccae ATCC 33574]
          Length = 293

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKP 57
           V  E CI C    C EVCP +    G        H   CI C  C   CP  AI  
Sbjct: 222 VDRERCIQC--GICAEVCPTENVIGGHKRYPQWKHDGSCITCFACYHHCPQRAIDY 275


>gi|315917799|ref|ZP_07914039.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691674|gb|EFS28509.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 316

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 221 ACIGC--GMCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 267



 Score = 39.2 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
            C  + DC  VCPV      E  + ++  + CI CG+C   CP   I  
Sbjct: 146 GCLGYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVIAM 194



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAI--------------HPDECIDCGVCE 47
           V  E CI C    CV+ CP  V         + +                  CI CG+C+
Sbjct: 172 VDEEACISC--GLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 229

Query: 48  PECPVDAI 55
             CP  AI
Sbjct: 230 RTCPFGAI 237


>gi|297539097|ref|YP_003674866.1| cytochrome c oxidase accessory protein CcoG [Methylotenera sp. 301]
 gi|297258444|gb|ADI30289.1| cytochrome c oxidase accessory protein CcoG [Methylotenera sp. 301]
          Length = 505

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP                ECI CG C   C     K   E GL  + 
Sbjct: 269 SCIDCSL--CVQVCPTGIDIRDGLQY-----ECIGCGACADVCDTVMDKMGYERGLVKYS 321

Query: 68  KINS 71
             N+
Sbjct: 322 TQNA 325


>gi|257452975|ref|ZP_05618274.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium sp. 3_1_5R]
          Length = 312

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 217 ACIGC--GMCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 263



 Score = 39.2 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
            C  + DC  VCPV      E  + ++  + CI CG+C   CP   I  
Sbjct: 142 GCLGYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVIAM 190



 Score = 35.7 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAI--------------HPDECIDCGVCE 47
           V  E CI C    CV+ CP  V         + +                  CI CG+C+
Sbjct: 168 VDEEACISC--GLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 225

Query: 48  PECPVDAI 55
             CP  AI
Sbjct: 226 RTCPFGAI 233


>gi|239908733|ref|YP_002955475.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798600|dbj|BAH77589.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 141

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
          M Y + E C+ C    C + CP             I    C+DCGVC   CP  AI
Sbjct: 1  MAYEIDEACVGCS--ACAKKCPEGAISGEPKKQHQIDSLFCVDCGVCFNTCPRGAI 54


>gi|240146037|ref|ZP_04744638.1| RnfB/polyferredoxin [Roseburia intestinalis L1-82]
 gi|257201853|gb|EEV00138.1| RnfB/polyferredoxin [Roseburia intestinalis L1-82]
 gi|291536104|emb|CBL09216.1| electron transport complex, RnfABCDGE type, B subunit [Roseburia
           intestinalis M50/1]
 gi|291539036|emb|CBL12147.1| electron transport complex, RnfABCDGE type, B subunit [Roseburia
           intestinalis XB6B4]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP D  +  +N   I  ++C+ CG+C  +CP   I
Sbjct: 218 CIGC--HLCEKNCPKDAVHVIDNVAYIDQEKCVGCGICAQKCPKKII 262



 Score = 39.2 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 8   NCI-LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C   C     CV+ CP D  +  +    +  + C  CG C   CP   I
Sbjct: 139 ACNYGCLGFGSCVKACPFDAIHIVDGIALVDKEVCKACGKCVAACPKHLI 188


>gi|188026141|ref|ZP_02997791.1| hypothetical protein PROSTU_03029 [Providencia stuartii ATCC 25827]
 gi|188021796|gb|EDU59836.1| hypothetical protein PROSTU_03029 [Providencia stuartii ATCC 25827]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVC 46
           +Y ++ +C  C +  CVE CP    ++   +  + +    C+ C  C
Sbjct: 59  SYYLSISCNHCSNPTCVEGCPTGAMHKRAEDGLVVVDQTVCVGCRYC 105


>gi|139438945|ref|ZP_01772405.1| Hypothetical protein COLAER_01411 [Collinsella aerofaciens ATCC
           25986]
 gi|133775656|gb|EBA39476.1| Hypothetical protein COLAER_01411 [Collinsella aerofaciens ATCC
           25986]
          Length = 253

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M    TE+C+ C    C  +CPV    + +       + CI C  C   C  +A K D
Sbjct: 174 MVPHATEDCVSC--GACAALCPVRAIDKDDPRQV-DGEACISCMRCVSVCSQNARKLD 228


>gi|83590801|ref|YP_430810.1| nitrite and sulphite reductase 4Fe-4S region [Moorella
           thermoacetica ATCC 39073]
 gi|83573715|gb|ABC20267.1| Nitrite and sulphite reductase 4Fe-4S region [Moorella
           thermoacetica ATCC 39073]
          Length = 299

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C LC    C  +CP        + + I   +C   G C   CP  A
Sbjct: 168 DRCSLC--GLCQSICPGGAIKIIADRVTIDRQKCCGDGACVASCPTGA 213



 Score = 34.2 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           +  + C  C    CV  CP   +  G     
Sbjct: 194 IDRQKC--CGDGACVASCPTGAWTAGARGFV 222


>gi|21230794|ref|NP_636711.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769208|ref|YP_243970.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992355|ref|YP_001904365.1| ferredoxin [Xanthomonas campestris pv. campestris str. B100]
 gi|21112394|gb|AAM40635.1| ferredoxin II [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574540|gb|AAY49950.1| ferredoxin II [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734115|emb|CAP52321.1| Putative ferredoxin [Xanthomonas campestris pv. campestris]
          Length = 139

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 81  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCVPACPVDCI 133


>gi|332158933|ref|YP_004424212.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus sp. NA2]
 gi|331034396|gb|AEC52208.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus sp. NA2]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M  +    C+ C    C + CP    Y  E+    I  D C  CG+C  ECP  AI    
Sbjct: 45  MPVIDESKCVKCY--ICWKFCPEPAIYIKEDGFVAIDYDYCKGCGICANECPTKAITMVR 102

Query: 60  EPG 62
           E  
Sbjct: 103 EEK 105


>gi|330824909|ref|YP_004388212.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans K601]
 gi|329310281|gb|AEB84696.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans K601]
          Length = 474

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C  T CV+VCPV               ECI CG+C   C 
Sbjct: 268 CIDC--TLCVQVCPVGIDIRDGLQY-----ECIGCGLCIDACN 303


>gi|332654091|ref|ZP_08419835.1| putative ferredoxin [Ruminococcaceae bacterium D16]
 gi|332517177|gb|EGJ46782.1| putative ferredoxin [Ruminococcaceae bacterium D16]
          Length = 277

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             + C+ C    C  +CP+      +    +   +CI C  C  +CP  A   D E  L 
Sbjct: 202 DPDKCVKC--GLCARLCPMGSIDPNDVSNVV--GKCIKCCACVKKCPKGAKYFDHEGYLY 257

Query: 65  LWLKINSEYA 74
              ++  +YA
Sbjct: 258 HQHELEDQYA 267


>gi|319762830|ref|YP_004126767.1| cytochrome c oxidase accessory protein ccog [Alicycliphilus
           denitrificans BC]
 gi|317117391|gb|ADU99879.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans BC]
          Length = 474

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C  T CV+VCPV               ECI CG+C   C 
Sbjct: 268 CIDC--TLCVQVCPVGIDIRDGLQY-----ECIGCGLCIDACN 303


>gi|293407197|ref|ZP_06651121.1| electron transporter HydN [Escherichia coli FVEC1412]
 gi|291426008|gb|EFE99042.1| electron transporter HydN [Escherichia coli FVEC1412]
          Length = 159

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP   +
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGTM 106


>gi|288559381|ref|YP_003422867.1| archaeoflavoprotein AfpA [Methanobrevibacter ruminantium M1]
 gi|288542091|gb|ADC45975.1| archaeoflavoprotein AfpA [Methanobrevibacter ruminantium M1]
          Length = 233

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C   D  EVCP       +    I   +CI CG C+  C   A+
Sbjct: 146 KCQKCDVCDAAEVCPNGAIVAHQE---IDLLKCIGCGACKDICQYGAV 190


>gi|258514877|ref|YP_003191099.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778582|gb|ACV62476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 272

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
             NC  CK   C  VCP+      +  ++     CI C  C   CP +A   D +  L  
Sbjct: 199 NSNCTDCK--VCASVCPMGSIDYED--VSKLNGICIKCCACIKSCPTEAKYFDDKDYLRH 254

Query: 66  WLKINSEYA 74
             ++  E+A
Sbjct: 255 KYELEVEFA 263


>gi|255010643|ref|ZP_05282769.1| putative ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 278

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C ++CPV    +G+       + CI C  C   CP  A   DT 
Sbjct: 211 CTHC--GACAKMCPVSAIIKGDELNT-DAERCIKCCACVKGCPQKARVYDTP 259


>gi|217969702|ref|YP_002354936.1| cytochrome C oxidase accessory protein CcoG [Thauera sp. MZ1T]
 gi|217507029|gb|ACK54040.1| cytochrome c oxidase accessory protein CcoG [Thauera sp. MZ1T]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C  C   C     K +   GL  +  
Sbjct: 271 CIDC--GICVQVCPTGIDIRDGLQY-----ECIGCAACIDACDQVMDKMNYPRGLIRYST 323

Query: 69  INS 71
            N+
Sbjct: 324 ENA 326


>gi|219854097|ref|YP_002471219.1| hypothetical protein CKR_0754 [Clostridium kluyveri NBRC 12016]
 gi|219567821|dbj|BAH05805.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP-VDAIKPD 58
          M  +  E C  C+   C +VCPVD     +     I  ++CI CG C   C    +I  D
Sbjct: 10 MINIDRELCTGCR--RCADVCPVDAIGGNKGEPQAIDMEKCIMCGQCIQICKGYYSIYDD 67


>gi|220905362|ref|YP_002480674.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869661|gb|ACL49996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 653

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V    C+ C    C++ CP     E    GE    +    C  CG+C   CP  AI+   
Sbjct: 580 VDMRRCVNC--GKCIQCCPFGAIKEVEVRGEGKAQVIETVCQGCGLCTATCPQGAIQLSH 637

Query: 60  EPGLELWLKINS 71
               ++  ++N+
Sbjct: 638 ATDNQILAEVNA 649



 Score = 34.6 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 23/85 (27%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECID 42
           TYV    C  C    C E CP                               I+   C  
Sbjct: 235 TYVDWSLCTGC--GACTEKCPSKKTPDAFNEEISNTTAITIAFPQAIPKKAVINAGHCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AIK D E  
Sbjct: 293 FIKGKCGVCAKICPTGAIKYDMEDE 317


>gi|124485105|ref|YP_001029721.1| hypothetical protein Mlab_0278 [Methanocorpusculum labreanum Z]
 gi|124362646|gb|ABN06454.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 268

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +VV+ +C  C    CV +CPV+      +       +C  C  C   CPV+A+  
Sbjct: 186 FVVSPSCNGC--QICVRICPVNNIRALPHGKKEWLHKCEGCLACLQFCPVEALSC 238


>gi|315426392|dbj|BAJ48031.1| molybdopterin oxidoreductase Fe-S binding subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 384

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP    Y+   +  + +    C     C   C    +  
Sbjct: 158 CNHCTYPACLASCPRLSIYKRPEDGIVLVDQARCRGYRECVQACSYKKVFY 208


>gi|297539545|ref|YP_003675314.1| RnfABCDGE type electron transport complex subunit B [Methylotenera
           sp. 301]
 gi|297258892|gb|ADI30737.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylotenera sp. 301]
          Length = 190

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
            ++    CI C  T C++ CPVD      ++   I   EC  C +C   CPVD I     
Sbjct: 106 AFIDEATCIGC--TLCIQACPVDAILGAAKHMHTIISSECTGCELCLAPCPVDCITMVPI 163

Query: 59  -TEPGLELW 66
              P    W
Sbjct: 164 AENPDNWKW 172


>gi|261494103|ref|ZP_05990606.1| nitrite reductase Fe-S protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496056|ref|ZP_05992466.1| nitrite reductase Fe-S protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308306|gb|EEY09599.1| nitrite reductase Fe-S protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310269|gb|EEY11469.1| nitrite reductase Fe-S protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 225

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       +      C+ C  C   CP        E
Sbjct: 93  QSCQHCTNAPCVSVCPTGASFIDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPE 148


>gi|258516509|ref|YP_003192731.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780214|gb|ACV64108.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 947

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T +C  C    C+  CP       E+ + I+P +C  CG+C  ECP++A+
Sbjct: 880 VNTGDCAACL--TCLRTCPYSVPKIVEHKVFINPVQCRGCGICTSECPLNAL 929


>gi|169796778|ref|YP_001714571.1| hypothetical protein ABAYE2765 [Acinetobacter baumannii AYE]
 gi|213156829|ref|YP_002318490.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB0057]
 gi|239502943|ref|ZP_04662253.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB900]
 gi|301345598|ref|ZP_07226339.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB056]
 gi|301510039|ref|ZP_07235276.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB058]
 gi|301597671|ref|ZP_07242679.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB059]
 gi|169149705|emb|CAM87596.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213055989|gb|ACJ40891.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB0057]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 89  EDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|52080446|ref|YP_079237.1| nitrate reductase subunit beta [Bacillus licheniformis ATCC 14580]
 gi|52785827|ref|YP_091656.1| NarH [Bacillus licheniformis ATCC 14580]
 gi|52003657|gb|AAU23599.1| nitrate reductase (beta subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52348329|gb|AAU40963.1| NarH [Bacillus licheniformis ATCC 14580]
          Length = 489

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPSCVSSCPSGAMYKREEDGIVLVDQNACRSWRHCVSSCPYKKVYFNWQTNKAE 239


>gi|21699000|dbj|BAC02733.1| nitrate reductase beta subunit [Bacillus licheniformis]
          Length = 489

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPSCVSSCPSGAMYKREEDGIVLVDQNACRSWRHCVSSCPYKKVYFNWQTNKAE 239


>gi|116751281|ref|YP_847968.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700345|gb|ABK19533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 358

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 12/79 (15%)

Query: 4   VVTENCILCKHTDCV-EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD---- 58
           +  + C  C    C  E C V+   +  +F  I  D CI CG+C   CP +AI       
Sbjct: 272 IDPDKCSHC--GICADERCQVEAIRDEGDFYRIVGDRCIGCGLCATTCPEEAIALMRRQP 329

Query: 59  -----TEPGLELWLKINSE 72
                T    E W++  + 
Sbjct: 330 EEPGTTPETEEAWMEERAR 348


>gi|257466645|ref|ZP_05630956.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 312

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 217 ACIGC--GMCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 263



 Score = 39.2 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
            C  + DC  VCPV      E  + ++  + CI CG+C   CP   I  
Sbjct: 142 GCLGYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVIAM 190



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAI--------------HPDECIDCGVCE 47
           V  E CI C    CV+ CP  V         + +                  CI CG+C+
Sbjct: 168 VDEEACISC--GLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 225

Query: 48  PECPVDAI 55
             CP  AI
Sbjct: 226 RTCPFGAI 233


>gi|255527702|ref|ZP_05394559.1| dihydroorotate dehydrogenase family protein [Clostridium
           carboxidivorans P7]
 gi|296185037|ref|ZP_06853447.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255508615|gb|EET84998.1| dihydroorotate dehydrogenase family protein [Clostridium
           carboxidivorans P7]
 gi|296049871|gb|EFG89295.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 360

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    CV+ C        +    I+  +C  CG+C   CP  AI
Sbjct: 310 INKEKCNSC--GKCVKSCAYSAITISD-KANINTTKCFGCGLCLTRCPETAI 358


>gi|260881462|ref|ZP_05404474.2| nitrate reductase, beta subunit [Mitsuokella multacida DSM 20544]
 gi|260848502|gb|EEX68509.1| nitrate reductase, beta subunit [Mitsuokella multacida DSM 20544]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  D C     C P CP   +  + +     
Sbjct: 173 CNHCLNPACVAACPSGAIYKREEDGVVLVSQDGCRSWRHCVPACPYKKVFFNWKTNKAE 231


>gi|225569142|ref|ZP_03778167.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
          15053]
 gi|225161941|gb|EEG74560.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
          15053]
          Length = 302

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           +E C  C    C  VCP +   E    +      C  CG C   C 
Sbjct: 49 DSERCAGC--GSCAVVCPQNAVREEAGKMVTDRKLCTGCGTCVDSCN 93


>gi|319645594|ref|ZP_07999826.1| nitrate reductase beta subunit [Bacillus sp. BT1B_CT2]
 gi|317392480|gb|EFV73275.1| nitrate reductase beta subunit [Bacillus sp. BT1B_CT2]
          Length = 489

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPSCVSSCPSGAMYKREEDGIVLVDQNACRSWRHCVSSCPYKKVYFNWQTNKAE 239


>gi|297617703|ref|YP_003702862.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
 gi|297145540|gb|ADI02297.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
          Length = 401

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
          VT +C  C H  C  VCP             I   +C++CG C   CP  AI
Sbjct: 26 VTSDCHGCDH--CTSVCPSHAIKGRIGEQHHIDTRKCLNCGQCLISCPFGAI 75


>gi|255527636|ref|ZP_05394497.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7]
 gi|296185314|ref|ZP_06853724.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7]
 gi|255508678|gb|EET85057.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7]
 gi|296050148|gb|EFG89572.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7]
          Length = 317

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 19/96 (19%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            CI C    CV+ C              +    D+CI CG C  +CP  A          
Sbjct: 173 RCIGC--QACVKNCKKRSTGALSFENFKVVRDHDKCIGCGECVGKCPTGA---------- 220

Query: 65  LWLKINSEYATQWPN-ITTKKES--LPSAAKMDGVK 97
            W + + +Y        T KK        AK    +
Sbjct: 221 -WTRSDEKYFKLVIMGRTGKKNPRLAKDFAKWIDEE 255


>gi|218707208|ref|YP_002414727.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli UMN026]
 gi|298382945|ref|ZP_06992540.1| electron transporter HydN [Escherichia coli FVEC1302]
 gi|300898713|ref|ZP_07117025.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|218434305|emb|CAR15227.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli UMN026]
 gi|298276781|gb|EFI18299.1| electron transporter HydN [Escherichia coli FVEC1302]
 gi|300357631|gb|EFJ73501.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
          Length = 157

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VCPVD        + +    CI C  C   CP   +
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGTM 104


>gi|150400534|ref|YP_001324300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013237|gb|ABR55688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 383

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C+ C    CV VCPV+      +   +  ++C+ C +C   CP +AI    E   +
Sbjct: 128 VVDACVGC--GVCVPVCPVEAINIENDRAVVDKNKCMYCSICAQTCPWNAIYVAGEIPKK 185

Query: 65  LWLK 68
              +
Sbjct: 186 RHKE 189


>gi|150389144|ref|YP_001319193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149949006|gb|ABR47534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 358

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C     +E+CPV+   + E  + I  + C  CG+C   CP  A+
Sbjct: 30 KEKCRKC-----IEICPVEAIKQKETIIVIDKNSCNGCGICNVVCPSQAL 74


>gi|315633731|ref|ZP_07889021.1| thiosulfate reductase electron transporter phsb [Aggregatibacter
           segnis ATCC 33393]
 gi|325577752|ref|ZP_08148027.1| thiosulfate reductase electron transporter phsb [Haemophilus
           parainfluenzae ATCC 33392]
 gi|315477773|gb|EFU68515.1| thiosulfate reductase electron transporter phsb [Aggregatibacter
           segnis ATCC 33393]
 gi|325160497|gb|EGC72623.1| thiosulfate reductase electron transporter phsb [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +       +   +  C+ C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDPETGIVDVHKDLCVGCQYCVAVCPYR 140


>gi|317055057|ref|YP_004103524.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Ruminococcus albus 7]
 gi|315447326|gb|ADU20890.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 7]
          Length = 603

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             + TE CI C+    +  CP     +G   +AI    C  CG+C   CPV+AI
Sbjct: 545 AVIDTEKCINCQKCKNLLGCPGLVLRDG--KIAIEESLCTGCGLCAQVCPVNAI 596


>gi|296502738|ref|YP_003664438.1| respiratory nitrate reductase subunit beta [Bacillus thuringiensis
           BMB171]
 gi|296323790|gb|ADH06718.1| respiratory nitrate reductase beta chain [Bacillus thuringiensis
           BMB171]
          Length = 411

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 102 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 160


>gi|261341169|ref|ZP_05969027.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316464|gb|EFC55402.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
          Length = 319

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEP 61
           +   E C+ C    C ++CP       +   +++ D  C  CG+CE  CP  A+    EP
Sbjct: 62  FFHAERCLHC--GQCAQLCPTGLHSWQDGLHSLNRDRSCTGCGLCEERCPAAALNVVGEP 119


>gi|223041744|ref|ZP_03611937.1| electron transport complex protein RnfB [Actinobacillus minor 202]
 gi|223017428|gb|EEF15846.1| electron transport complex protein RnfB [Actinobacillus minor 202]
          Length = 203

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  + CI C  T C++ CPVD      +    +  D C  C +C   CP + I+    
Sbjct: 109 AFIHEDMCIGC--TKCIQACPVDAIIGTNKAMHTVIADLCTGCELCVAPCPTNCIEMIKP 166


>gi|206901318|ref|YP_002250052.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740421|gb|ACI19479.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 151

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 12/80 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    C++ C     +  EN  AI    ++C+ C  C   CP  AI+          
Sbjct: 66  CRHCDDPLCIKACITGAMHRDENTGAILCDEEKCVGCWSCILVCPYGAIRRGE------- 118

Query: 67  LKINSEYATQWPNITTKKES 86
              N + A++      K + 
Sbjct: 119 ---NKKVASKCDLCIEKGDP 135


>gi|218439089|ref|YP_002377418.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7424]
 gi|218171817|gb|ACK70550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7424]
          Length = 128

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M+Y +T  CI C    C+  CP     +  + L I    C DC          +I P
Sbjct: 1  MSYTITHQCIGCD--RCLVQCPTGAIEKVNDVLVIDSTLCNDCLGYYGTAQCASICP 55


>gi|119595092|gb|EAW74686.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_b [Homo
           sapiens]
 gi|119595094|gb|EAW74688.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_b [Homo
           sapiens]
          Length = 172

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 12/65 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165

Query: 56  KPDTE 60
                
Sbjct: 166 VEARP 170


>gi|147921364|ref|YP_684822.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110620218|emb|CAJ35496.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 146

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y  T+ C  C    CV+VCPV+     +  +   P+ CI C  C   CP  A+
Sbjct: 72  YHTTDKCNAC--GTCVKVCPVNNVTLTDRKVTWGPN-CIHCLACFHWCPARAV 121


>gi|88603575|ref|YP_503753.1| coenzyme F420 hydrogenase [Methanospirillum hungatei JF-1]
 gi|88189037|gb|ABD42034.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanospirillum
           hungatei JF-1]
          Length = 262

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           MT V+ +  C+ C    C   CPV      E    I  D CI CG C   CP      D
Sbjct: 185 MTKVINQGLCMGC--GTCATSCPVFAITMEEGKPNIQRDMCIKCGACYAACPRAFFSFD 241


>gi|325960196|ref|YP_004291662.1| methyl-viologen-reducing hydrogenase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325331628|gb|ADZ10690.1| methyl-viologen-reducing hydrogenase delta subunit
           [Methanobacterium sp. AL-21]
          Length = 771

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C+E CP    Y  +  + + P  C  CG C   C   A+
Sbjct: 580 DRCNQCL--SCLEQCPAKAIYLDK-MVEVDPVACTGCGYCVSLCETKAL 625



 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 20/75 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA------------------IHPDECIDCGV 45
           +  + C  C    C E+C ++   E    L                   I PD CI CG 
Sbjct: 238 IDGDRCTSC--GRCAEICSINVPDEFNFNLTLRNAAYKPFAGALPSSFSIDPDACIKCGK 295

Query: 46  CEPECPVDAIKPDTE 60
           C   CPVDAI  +++
Sbjct: 296 CVEACPVDAINLESK 310


>gi|320532478|ref|ZP_08033301.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135308|gb|EFW27433.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 235

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 75  EKCIGCEL--CAWACPADAIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEAC 132

Query: 51  PVDAIKPDTE 60
           P  A+   T+
Sbjct: 133 PTRALTMSTD 142


>gi|319940642|ref|ZP_08014985.1| iron-sulfur binding protein [Sutterella wadsworthensis 3_1_45B]
 gi|319806008|gb|EFW02766.1| iron-sulfur binding protein [Sutterella wadsworthensis 3_1_45B]
          Length = 234

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHT-DCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VV + C  C H   C   CP              +  + CI C +CE  CP D +  D E
Sbjct: 116 VVQDTCRQCPHPVPCANACPQGAIQVDPKTGARVVVKERCIGCHLCEKACPWDMMSFDDE 175

Query: 61  PG 62
             
Sbjct: 176 EN 177



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKP 57
           VV E CI C    C + CP D     +          C     C   CP  AI+ 
Sbjct: 150 VVKERCIGC--HLCEKACPWDMMSFDDEENKASKCFLCNGDPKCVKACPAAAIRY 202


>gi|302342224|ref|YP_003806753.1| methyl-viologen-reducing hydrogenase subunit delta [Desulfarculus
           baarsii DSM 2075]
 gi|301638837|gb|ADK84159.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 810

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 4   VVTENCILCKHTDCVEVC------PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    CI C    C E+C      PV     G     + P  C   G C   CP  A+
Sbjct: 485 VDESKCIGC--GLCKEICDCGGIEPVQ-GRGGNIPRHVDPMLCTGGGTCAAACPYHAL 539


>gi|300854909|ref|YP_003779893.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
 gi|300435024|gb|ADK14791.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
          Length = 457

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE-- 60
          +  E C  C+   C ++CPVD     +     I+ + C+ CG C   C   A   D +  
Sbjct: 11 IDKELCTGCR--RCADICPVDAIEGEKGQPQTINTERCVLCGQCVQICSAYASAFDEDIT 68

Query: 61 PGLELWLKIN 70
          P  E   + N
Sbjct: 69 PHKEKIKERN 78


>gi|257462471|ref|ZP_05626883.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium sp. D12]
 gi|317060128|ref|ZP_07924613.1| electron transport complex protein [Fusobacterium sp. D12]
 gi|313685804|gb|EFS22639.1| electron transport complex protein [Fusobacterium sp. D12]
          Length = 325

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 217 ACIGC--GMCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 263



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
            C  + DC  VCPV      E  + ++  + CI CG+C   CP   I  
Sbjct: 142 GCLGYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVIAM 190



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAI--------------HPDECIDCGVCE 47
           V  E CI C    CV+ CP  V         + +                  CI CG+C+
Sbjct: 168 VDEEACISC--GLCVKACPKSVIAMTPAAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 225

Query: 48  PECPVDAI 55
             CP  AI
Sbjct: 226 RTCPFGAI 233


>gi|222444426|ref|ZP_03606941.1| hypothetical protein METSMIALI_00037 [Methanobrevibacter smithii
           DSM 2375]
 gi|222433991|gb|EEE41156.1| hypothetical protein METSMIALI_00037 [Methanobrevibacter smithii
           DSM 2375]
          Length = 343

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
           +++ +  CI CK   C++ CPV   + E +  + ++P +CI CG C   CP
Sbjct: 121 FIIDDYLCIRCKK--CMKQCPVGAIHVEDDGKVVVNPFKCISCGECLDVCP 169



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 13/78 (16%)

Query: 4   VVTENCILCKHTDCVEVCPV-----------DCFYEGENFLAIHPDECIDCGVCEPECPV 52
           V+ E CI C    C+  CP            D   EG  +  I+   CI CG C   CP 
Sbjct: 38  VIKEYCIGC--GACISSCPSPNAIKLVRDEDDETKEGITYPIINKSACIRCGFCAEVCPT 95

Query: 53  DAIKPDTEPGLELWLKIN 70
           +    +      L  + N
Sbjct: 96  EPKTLECGENHLLKPEFN 113



 Score = 34.6 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 18/73 (24%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           +    CI C    C EVCP +                     +    I    CI C  C 
Sbjct: 78  INKSACIRC--GFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCM 135

Query: 48  PECPVDAIKPDTE 60
            +CPV AI  + +
Sbjct: 136 KQCPVGAIHVEDD 148


>gi|170759045|ref|YP_001787152.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A3
          str. Loch Maree]
 gi|169406034|gb|ACA54445.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A3
          str. Loch Maree]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|170754864|ref|YP_001781378.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum B1
          str. Okra]
 gi|169120076|gb|ACA43912.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum B1
          str. Okra]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|150400533|ref|YP_001324299.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013236|gb|ABR55687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 654

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           Y+    C  C    C EVCP++   E +                      I  + CI C 
Sbjct: 240 YLDEAKCTGC--GQCAEVCPIEVPNEFDMGLGIRKAIYKPFPQAVPAKYTIDKEHCIGCE 297

Query: 45  VCEPECPVDAIKPDTEPG 62
           +C   C   AI    EP 
Sbjct: 298 LCSKVCGPGAINYSQEPE 315


>gi|152998654|ref|YP_001364335.1| formate dehydrogenase subunit beta [Shewanella baltica OS185]
 gi|217971318|ref|YP_002356069.1| formate dehydrogenase subunit beta [Shewanella baltica OS223]
 gi|151363272|gb|ABS06272.1| formate dehydrogenase, beta subunit [Shewanella baltica OS185]
 gi|217496453|gb|ACK44646.1| formate dehydrogenase, beta subunit [Shewanella baltica OS223]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C+ C    C+  C       +  N +     D+CI CG C   CP D  K D +  
Sbjct: 97  ACMHCADPACLTACSTSGAIIQHANGVVDFDSDKCIGCGYCASACPFDVPKIDPKDN 153


>gi|322378675|ref|ZP_08053108.1| NADH-quinone oxidoreductase subunit I (NuoI) [Helicobacter suis
           HS1]
 gi|322379666|ref|ZP_08053984.1| NADH dehydrogenase subunit I [Helicobacter suis HS5]
 gi|321147902|gb|EFX42484.1| NADH dehydrogenase subunit I [Helicobacter suis HS5]
 gi|321148892|gb|EFX43359.1| NADH-quinone oxidoreductase subunit I (NuoI) [Helicobacter suis
           HS1]
          Length = 218

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 81  NERCIGC--GLCEKICTSNCIRIITHKAPDERKYIDSYTINLGRCIYCGLCAEVCPELAI 138

Query: 56  KP 57
             
Sbjct: 139 VM 140


>gi|255528470|ref|ZP_05395261.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255507836|gb|EET84285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 343

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL-W 66
            C  C    C + CP      G     I+ D+C+ C  C   C   A+       L   +
Sbjct: 190 KCKGC--GSCAKNCPEKAIVMGS-KAKINKDKCVGCAACMTTCNFGAVSNSWLASLSKSF 246

Query: 67  LKINSEYA 74
            +  +EYA
Sbjct: 247 NERLAEYA 254


>gi|255016076|ref|ZP_05288202.1| hypothetical protein B2_19400 [Bacteroides sp. 2_1_7]
          Length = 256

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI C    C +VCP        +      D C+ C  C   CPV AI+ 
Sbjct: 188 FYATDACISC--GICAKVCPTGTISLSGDGKPEWADSCVQCVACIHRCPVRAIEY 240


>gi|240948591|ref|ZP_04752964.1| electron transport complex protein RnfB [Actinobacillus minor
           NM305]
 gi|240297099|gb|EER47670.1| electron transport complex protein RnfB [Actinobacillus minor
           NM305]
          Length = 203

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  + CI C  T C++ CPVD      +    +  D C  C +C   CP + I+    
Sbjct: 109 AFIHEDMCIGC--TKCIQACPVDAIIGTNKAMHTVIADLCTGCELCIAPCPTNCIEMIKP 166


>gi|239909239|ref|YP_002955981.1| nucleotide-disulphide oxidoreductase family protein [Desulfovibrio
           magneticus RS-1]
 gi|239799106|dbj|BAH78095.1| nucleotide-disulphide oxidoreductase family protein [Desulfovibrio
           magneticus RS-1]
          Length = 777

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPV 52
            C  C    C  +CPV           E  +   P++CI CG C   CP 
Sbjct: 717 ACRDC--GLCETLCPVGAISRQQKEGKEFAMVSDPEKCIGCGFCANACPC 764


>gi|256828267|ref|YP_003156995.1| nitroreductase [Desulfomicrobium baculatum DSM 4028]
 gi|256577443|gb|ACU88579.1| nitroreductase [Desulfomicrobium baculatum DSM 4028]
          Length = 271

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++  + CI C   +C   CP       E         C  C  C   CP  A+
Sbjct: 5  HIDKDKCIQC--GECAADCPAGIIEMREFPEITDEGRCYRCQHCYTVCPTGAV 55


>gi|225418712|ref|ZP_03761901.1| hypothetical protein CLOSTASPAR_05936 [Clostridium asparagiforme
           DSM 15981]
 gi|225041767|gb|EEG52013.1| hypothetical protein CLOSTASPAR_05936 [Clostridium asparagiforme
           DSM 15981]
          Length = 175

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C+ C    C+  CPV C  +     F       CI C  C   CP  A +     
Sbjct: 60  ACMHCDDAPCISACPVGCLRKDPETGFTVYDNANCIGCKSCALACPFGAPRFRPSD 115


>gi|217419601|ref|ZP_03451107.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 576]
 gi|217396905|gb|EEC36921.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 576]
          Length = 290

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|168184888|ref|ZP_02619552.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          Bf]
 gi|182672047|gb|EDT84008.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          Bf]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|168180404|ref|ZP_02615068.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          NCTC 2916]
 gi|182668801|gb|EDT80779.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          NCTC 2916]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|160873232|ref|YP_001552548.1| formate dehydrogenase subunit beta [Shewanella baltica OS195]
 gi|160858754|gb|ABX47288.1| formate dehydrogenase, beta subunit [Shewanella baltica OS195]
 gi|315265457|gb|ADT92310.1| formate dehydrogenase, beta subunit [Shewanella baltica OS678]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C+ C    C+  C       +  N +     D+CI CG C   CP D  K D +  
Sbjct: 97  ACMHCADPACLTACSTSGAIIQHANGVVDFDSDKCIGCGYCASACPFDVPKIDPKDN 153


>gi|53718739|ref|YP_107725.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|134281040|ref|ZP_01767749.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 305]
 gi|237811474|ref|YP_002895925.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           pseudomallei MSHR346]
 gi|52209153|emb|CAH35097.1| putative electron transport-related protein [Burkholderia
           pseudomallei K96243]
 gi|134247346|gb|EBA47431.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 305]
 gi|237505183|gb|ACQ97501.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 290

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|254298437|ref|ZP_04965889.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 406e]
 gi|157808125|gb|EDO85295.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 406e]
          Length = 281

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|317489291|ref|ZP_07947808.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325832214|ref|ZP_08165213.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
 gi|316911692|gb|EFV33284.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325486050|gb|EGC88504.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
          Length = 767

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 8/64 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVD 53
             V  E C  CK       CP   F                + P  C  CG+C   CP D
Sbjct: 684 AVVDAETCTGCKKCITEIGCPGIGFDADARGPRSKQRGQAFVDPSLCNGCGLCVQVCPFD 743

Query: 54  AIKP 57
           A+  
Sbjct: 744 ALSM 747



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCE 47
            +V    C  C    CV+VCP D     E    +  +     G C 
Sbjct: 723 AFVDPSLCNGC--GLCVQVCPFDALSMTEPQTDVSRETSASEGGCH 766


>gi|226952541|ref|ZP_03823005.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter sp. ATCC 27244]
 gi|226836723|gb|EEH69106.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter sp. ATCC 27244]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            + CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I
Sbjct: 93  EDECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCI 141


>gi|255655546|ref|ZP_05400955.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63]
 gi|296451536|ref|ZP_06893271.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296880115|ref|ZP_06904082.1| probable iron-sulfur protein [Clostridium difficile NAP07]
 gi|296259601|gb|EFH06461.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296428840|gb|EFH14720.1| probable iron-sulfur protein [Clostridium difficile NAP07]
          Length = 382

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C E CP      G     I   +CI C  C   CP  AI
Sbjct: 326 CIKC--GKCKEACPAATIEIGTKGAIIDLSKCIRCYCCHELCPKKAI 370


>gi|220904626|ref|YP_002479938.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868925|gb|ACL49260.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDE-CIDCGVCEPECPVDAI 55
            + C+ C    CV VCPV             +   + CI+CG C   CP  A+
Sbjct: 54  KDICVHC--GACVPVCPVGIHSMTNAGSCHVVDRSKDCINCGKCVHACPEAAL 104


>gi|218200865|gb|EEC83292.1| hypothetical protein OsI_28652 [Oryza sativa Indica Group]
          Length = 673

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 12/58 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVD 53
            E CI CK   C  VCP                      I   +CI CG CE  CP+ 
Sbjct: 395 EERCIACKL--CEAVCPALAITIESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPIR 450


>gi|257464839|ref|ZP_05629210.1| nitrate reductase, Fe-S protein [Actinobacillus minor 202]
 gi|257450499|gb|EEV24542.1| nitrate reductase, Fe-S protein [Actinobacillus minor 202]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       +      C+ C  C   CP        E
Sbjct: 93  QSCQHCSNAPCVSVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPE 148


>gi|226324375|ref|ZP_03799893.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758]
 gi|225206823|gb|EEG89177.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758]
          Length = 299

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
             E C+ C    C +VCP D     +    +  ++C  CG C+  CP     I     P 
Sbjct: 49  DKEKCVGC--GTCAKVCPNDAITMVDGKPELDKEKCQLCGKCDNFCPQGIREIVGQEYPV 106

Query: 63  LELWLKINSE 72
            EL  ++  +
Sbjct: 107 KELVKELMKD 116


>gi|169342408|ref|ZP_02863472.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299528|gb|EDS81592.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 273

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP +      N   I  ++C  CG+C  +CP  AI 
Sbjct: 219 CIGCKL--CEKNCPSEAIRVENNLAIIDYEKCTSCGICVSKCPKKAIN 264


>gi|150400069|ref|YP_001323836.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012772|gb|ABR55224.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Methanococcus vannielii SB]
          Length = 615

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V TE C  CK       CP          +  +   CI CG+C   CP +AI  +
Sbjct: 558 VDTEKCTGCKICFEELGCPAIVMDRDIPNITSN---CIACGLCVAVCPFNAIINE 609


>gi|52425872|ref|YP_089009.1| HybA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307924|gb|AAU38424.1| HybA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +       + ++ D C+ C  C   CP  
Sbjct: 94  QSCQHCTNAPCVAVCPTGASFIDPETGIVDVNKDLCVGCQYCIAVCPYR 142


>gi|325478783|gb|EGC81894.1| ferredoxin [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 57

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI  +
Sbjct: 1  MAYRIDENTCISC--GTCEGECPVGAISQGDAAYEIDADACIDCGSCAAVCPVEAIDQE 57


>gi|319776070|ref|YP_004138558.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3047]
 gi|301170439|emb|CBW30046.1| predicted iron-sulfur protein [Haemophilus influenzae 10810]
 gi|317450661|emb|CBY86881.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3047]
          Length = 193

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I PD C  C +C   CP D I  
Sbjct: 103 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILM 157


>gi|317052334|ref|YP_004113450.1| hypothetical protein Selin_2174 [Desulfurispirillum indicum S5]
 gi|316947418|gb|ADU66894.1| hypothetical protein Selin_2174 [Desulfurispirillum indicum S5]
          Length = 250

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPV 52
            C  C    CV VCP+   Y  +    +     +C+ C  C   CP 
Sbjct: 94  ACQHCDRPPCVLVCPITATYRRDKDGIVMQDDSKCMGCKYCMTACPY 140


>gi|296109198|ref|YP_003616147.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME]
 gi|295434012|gb|ADG13183.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME]
          Length = 226

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V  E C+ C    C   CP       +    + P  CI CG+C  +CP
Sbjct: 169 VNKELCMGC--GTCSASCPTRAITMVDGRPVVDPVLCIKCGLCSFQCP 214


>gi|239995948|ref|ZP_04716472.1| electron transport complex protein RnfB [Alteromonas macleodii ATCC
           27126]
          Length = 193

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      ++   +  DEC  C +C   CPVD I  
Sbjct: 111 AFIREDECIGC--TKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCIDM 165



 Score = 33.4 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C    CV+ CPVDC   
Sbjct: 140 MHTVITDECTGCDL--CVDPCPVDCIDM 165


>gi|254512703|ref|ZP_05124769.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Rhodobacteraceae
          bacterium KLH11]
 gi|221532702|gb|EEE35697.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Rhodobacteraceae
          bacterium KLH11]
          Length = 396

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  E CI C    C   CPV      +N + ++ D C  C  C P CP  +I  D    +
Sbjct: 10 IDPEICIRCY--TCEMTCPVQAIEHDDNNVVVNADLCNFCMDCIPVCPTGSI--DEWRVV 65

Query: 64 ELWLKINSEYATQWPNITTKKESLPSAAK 92
          E    +  +Y+  W  +  + E     A 
Sbjct: 66 EEAYSLEDQYS--WDELPEQAELCGDEAD 92


>gi|145591121|ref|YP_001153123.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282889|gb|ABP50471.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 373

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E C LC    CV VCP D      + L + P  CI CGVC  +CP   I+   +P   
Sbjct: 255 VKEGCTLC--GACVNVCPTDALSIKGHELRLVPALCIACGVCAEKCPEGVIEIRQQPEKR 312

Query: 65  LW 66
            +
Sbjct: 313 PY 314



 Score = 37.3 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           + CI C    C   CP   F   E  +  +  D C+DCG+C   CPVDAIK 
Sbjct: 85  DKCIWC--GLCAGYCPASAFEYVERAVVRVKYDLCVDCGLCNSVCPVDAIKM 134


>gi|163939945|ref|YP_001644829.1| nitrate reductase, beta subunit [Bacillus weihenstephanensis KBAB4]
 gi|163862142|gb|ABY43201.1| nitrate reductase, beta subunit [Bacillus weihenstephanensis KBAB4]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|317476538|ref|ZP_07935785.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907281|gb|EFV28988.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 277

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TE C  C +  C   CP     +G+       ++CI C  C   CP  A   DT 
Sbjct: 205 VDTELCSHCGY--CAVHCPASAIKKGDECYT-DAEKCIRCCACVKGCPQKARTFDTP 258



 Score = 33.8 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           Y   E CI C    CV+ CP         F 
Sbjct: 232 YTDAEKCIRC--CACVKGCPQKARTFDTPFA 260


>gi|311695002|gb|ADP97875.1| iron-sulfur cluster-binding protein [marine bacterium HP15]
          Length = 476

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C +C   C     K +   GL  +  
Sbjct: 275 CIDC--GQCVQVCPTGIDIRDGLQY-----ECIGCALCIDACDEIMDKMNYPRGLIRYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENE 330


>gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1]
          Length = 632

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 10/58 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL--------AIHPDECIDCGVCEPECPVDAI 55
            + CI C    C + CP       +            I  ++C+ CG C   C   AI
Sbjct: 574 KDKCIGC--GMCAKQCPASAITRTDYIAPGKKLAAMEIDKNKCVKCGACIATCKFKAI 629


>gi|260170786|ref|ZP_05757198.1| hypothetical protein BacD2_02892 [Bacteroides sp. D2]
 gi|315919121|ref|ZP_07915361.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692996|gb|EFS29831.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 258

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI CK   C + CPV+     +        +C  C  C   CP  A++ 
Sbjct: 188 FYATDACIGCK--RCEKSCPVENVTVVDGRPV-WGMDCTSCLACYHVCPQHAVQY 239


>gi|322419568|ref|YP_004198791.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           sp. M18]
 gi|320125955|gb|ADW13515.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sp. M18]
          Length = 584

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV E+C  C+   C+++ CP   +      +    I P  C  C VC   C   AI+
Sbjct: 527 VVEESCTGCR--ACLKIGCPAIEWVPASGKKGKAHIDPLLCNGCDVCSQLCKFSAIQ 581


>gi|254166869|ref|ZP_04873723.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289596256|ref|YP_003482952.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aciduliprofundum boonei T469]
 gi|197624479|gb|EDY37040.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289534043|gb|ADD08390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aciduliprofundum boonei T469]
          Length = 62

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V    C  C    CV  CPV+C +  E  + I  D+CI CG C   CPV AI  D 
Sbjct: 3  MMNVDPAICNYC--GACVGSCPVNCMFLDETIVRIDEDKCIKCGFCIRACPVGAISADW 59


>gi|187779575|ref|ZP_02996048.1| hypothetical protein CLOSPO_03171 [Clostridium sporogenes ATCC
          15579]
 gi|187773200|gb|EDU37002.1| hypothetical protein CLOSPO_03171 [Clostridium sporogenes ATCC
          15579]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|218780444|ref|YP_002431762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761828|gb|ACL04294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 281

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCV-EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C+ C    CV + C ++     +    I+   C  CG C   CP +AI
Sbjct: 199 VNQEECVGC--GTCVSKACILEAISLVDGKAVINQANCRGCGRCAEACPTNAI 249


>gi|160915265|ref|ZP_02077478.1| hypothetical protein EUBDOL_01273 [Eubacterium dolichum DSM 3991]
 gi|158433064|gb|EDP11353.1| hypothetical protein EUBDOL_01273 [Eubacterium dolichum DSM 3991]
          Length = 87

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
          M   V  + CI C    CV VCPV       ++        CIDCG C   CPV+AI
Sbjct: 31 MPVKVNADTCIGC--GACVGVCPVGALSMNADSKSECDEGTCIDCGSCISACPVEAI 85


>gi|148656359|ref|YP_001276564.1| NADH-quinone oxidoreductase subunit I [Roseiflexus sp. RS-1]
 gi|148568469|gb|ABQ90614.1| NADH-quinone oxidoreductase, chain I [Roseiflexus sp. RS-1]
          Length = 165

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 37/121 (30%), Gaps = 26/121 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------------YEGENFLAIHPDECIDCGVCEPEC 50
           E CI C    C   CP D                          I+   CI CG CE  C
Sbjct: 50  ERCIGCSL--CAAACPADAILVVPAENDPAAPHSPGERYAERYEINMLRCIFCGYCEDAC 107

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P +AI  + +  L  +         +  +I TK + L    K  G      +  +  P  
Sbjct: 108 PTNAIVLEHQYELSFY--------DRRSSILTKDDLLVPPDKGHGEVPPILEQLNRRPSP 159

Query: 111 K 111
            
Sbjct: 160 P 160


>gi|16273571|ref|NP_439826.1| electron transport complex protein RnfB [Haemophilus influenzae Rd
           KW20]
 gi|68250288|ref|YP_249400.1| electron transport complex protein RnfB [Haemophilus influenzae
           86-028NP]
 gi|145629224|ref|ZP_01785023.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.1-21]
 gi|145631464|ref|ZP_01787233.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|145633618|ref|ZP_01789345.1| electron transport complex protein RnfB [Haemophilus influenzae
           3655]
 gi|145635460|ref|ZP_01791161.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittAA]
 gi|145639160|ref|ZP_01794767.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittII]
 gi|148825772|ref|YP_001290525.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittEE]
 gi|229845219|ref|ZP_04465352.1| electron transport complex protein RnfB [Haemophilus influenzae
           6P18H1]
 gi|229847305|ref|ZP_04467407.1| electron transport complex protein RnfB [Haemophilus influenzae
           7P49H1]
 gi|260581277|ref|ZP_05849095.1| iron-sulfur cluster binding protein [Haemophilus influenzae RdAW]
 gi|260582612|ref|ZP_05850401.1| electron transport complex protein RnfB [Haemophilus influenzae
           NT127]
 gi|319896879|ref|YP_004135074.1| electron transport complex protein rnfb [Haemophilus influenzae
           F3031]
 gi|329123233|ref|ZP_08251801.1| electron transport complex protein RnfB [Haemophilus aegyptius ATCC
           11116]
 gi|6136672|sp|P71396|RNFB_HAEIN RecName: Full=Electron transport complex protein rnfB
 gi|81335291|sp|Q4QJQ7|RNFB_HAEI8 RecName: Full=Electron transport complex protein rnfB
 gi|166225084|sp|A5UBJ1|RNFB_HAEIE RecName: Full=Electron transport complex protein rnfB
 gi|1574536|gb|AAC23330.1| iron-sulfur cluster binding protein [Haemophilus influenzae Rd
           KW20]
 gi|68058487|gb|AAX88740.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Haemophilus
           influenzae 86-028NP]
 gi|144978727|gb|EDJ88450.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.1-21]
 gi|144982894|gb|EDJ90407.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|144985495|gb|EDJ92311.1| electron transport complex protein RnfB [Haemophilus influenzae
           3655]
 gi|145267334|gb|EDK07337.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittAA]
 gi|145271722|gb|EDK11632.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittII]
 gi|148715932|gb|ABQ98142.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittEE]
 gi|229809730|gb|EEP45454.1| electron transport complex protein RnfB [Haemophilus influenzae
           7P49H1]
 gi|229811814|gb|EEP47510.1| electron transport complex protein RnfB [Haemophilus influenzae
           6P18H1]
 gi|260092104|gb|EEW76049.1| iron-sulfur cluster binding protein [Haemophilus influenzae RdAW]
 gi|260094284|gb|EEW78183.1| electron transport complex protein RnfB [Haemophilus influenzae
           NT127]
 gi|309750740|gb|ADO80724.1| Electron transport complex protein RnfB [Haemophilus influenzae
           R2866]
 gi|309972920|gb|ADO96121.1| Electron transport complex protein RnfB [Haemophilus influenzae
           R2846]
 gi|317432383|emb|CBY80738.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3031]
 gi|327471442|gb|EGF16890.1| electron transport complex protein RnfB [Haemophilus aegyptius ATCC
           11116]
          Length = 193

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I PD C  C +C   CP D I  
Sbjct: 103 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILM 157


>gi|254819280|ref|ZP_05224281.1| NADH dehydrogenase subunit I [Mycobacterium intracellulare ATCC
           13950]
          Length = 181

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|251780085|ref|ZP_04823005.1| anaerobic sulfite reductase subunit C [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084400|gb|EES50290.1| anaerobic sulfite reductase subunit C [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 285

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +V+ + C+ C    CV+ C        +  +  + D C+DCG C   C + A
Sbjct: 162 FVI-DKCVGC--GLCVKACRQKALEVVDKKIVHNKDLCVDCGGCVRACKLGA 210


>gi|240102116|ref|YP_002958424.1| formate hydrogenlyase II subunit G (Mhy2G) [Thermococcus
          gammatolerans EJ3]
 gi|239909669|gb|ACS32560.1| formate hydrogenlyase II subunit G (Mhy2G) [Thermococcus
          gammatolerans EJ3]
          Length = 165

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++    CI C    CV  CP D       + +G   + +    CI C  C+  CP  AI
Sbjct: 22 PHINPRLCIGC--GACVNACPADALLRIDDYEKGTRKIVLDVGRCIRCARCDEACPTGAI 79

Query: 56 KP 57
          + 
Sbjct: 80 RM 81


>gi|226949071|ref|YP_002804162.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A2
          str. Kyoto]
 gi|226841860|gb|ACO84526.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A2
          str. Kyoto]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|119475395|ref|ZP_01615748.1| ferredoxin [marine gamma proteobacterium HTCC2143]
 gi|119451598|gb|EAW32831.1| ferredoxin [marine gamma proteobacterium HTCC2143]
          Length = 85

 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T+ CI C    C  VCP +  Y+G+    I P  C +C        C+  CPVD 
Sbjct: 1  MSLIITDECINCD--VCEPVCPNEAIYQGDEIYEIDPALCTECVGHFDEPQCQTVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|327398993|ref|YP_004339862.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Hippea maritima DSM 10411]
 gi|327181622|gb|AEA33803.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Hippea maritima DSM 10411]
          Length = 157

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           V   C  C    CV+VCP       ++ +  +  ++CI C  C   CP   I
Sbjct: 47 FVPTYCTQCNEAYCVDVCPTKALGRSQSGIVELDYNKCIGCKQCVIACPWGNI 99


>gi|315186450|gb|EFU20210.1| electron transport complex, RnfABCDGE type, B subunit [Spirochaeta
           thermophila DSM 6578]
          Length = 289

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV--DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    CV+VC           N   I P +CI CG C  ECP  AI
Sbjct: 223 ACIGC--GKCVKVCETVTQAITLEHNLAYIDPVKCIACGKCVAECPTGAI 270



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
            C  + DC E CP D            +  ++C  CGVC   CP +
Sbjct: 144 GCLHYGDCAEACPFDAISMDPVTGLPVVDEEKCTACGVCVEVCPRN 189


>gi|302343655|ref|YP_003808184.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfarculus baarsii DSM 2075]
 gi|301640268|gb|ADK85590.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfarculus baarsii DSM 2075]
          Length = 1477

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
              V    C +C    CV  CP       +    I    C  CG C  ECP  AI
Sbjct: 1407 ATVDPAKCAVCL--TCVRTCPYGVPKIKDGAAYIEVASCYGCGACAAECPGKAI 1458



 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN 31
           +V +E+C  C   DCV+VCPV    E + 
Sbjct: 106 FVASESCTAC--GDCVKVCPVSVPNEFDQ 132


>gi|288869815|ref|ZP_05976441.2| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|288860364|gb|EFC92662.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 343

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
           +++ +  CI CK   C++ CPV   + E +  + ++P +CI CG C   CP
Sbjct: 121 FIIDDYLCIRCKK--CMKQCPVGAIHVEDDGKVVVNPFKCISCGECLDVCP 169



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 13/78 (16%)

Query: 4   VVTENCILCKHTDCVEVCPV-----------DCFYEGENFLAIHPDECIDCGVCEPECPV 52
           V+ E CI C    C+  CP            D   EG  +  I+   CI CG C   CP 
Sbjct: 38  VIKEYCIGC--GACISSCPSPNAIKLVRDEDDETKEGVTYPIINKSACIRCGFCAEVCPT 95

Query: 53  DAIKPDTEPGLELWLKIN 70
           +    +      L  + N
Sbjct: 96  EPKTLECGENHLLKPEFN 113



 Score = 34.2 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 18/73 (24%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           +    CI C    C EVCP +                     +    I    CI C  C 
Sbjct: 78  INKSACIRC--GFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCM 135

Query: 48  PECPVDAIKPDTE 60
            +CPV AI  + +
Sbjct: 136 KQCPVGAIHVEDD 148


>gi|229816530|ref|ZP_04446829.1| hypothetical protein COLINT_03583 [Collinsella intestinalis DSM
          13280]
 gi|229807865|gb|EEP43668.1| hypothetical protein COLINT_03583 [Collinsella intestinalis DSM
          13280]
          Length = 84

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 1  MTY--VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +  +  + CI C    CV+ CP       +       D C+ CG C+  CP  AI   
Sbjct: 24 MAHPIIDADECIAC--GVCVDACPAGVLELNDVATVADEDSCVACGACQDACPAGAITEI 81

Query: 59 TEP 61
           E 
Sbjct: 82 AED 84


>gi|51596492|ref|YP_070683.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis IP 32953]
 gi|145598187|ref|YP_001162263.1| electron transport complex protein RnfB [Yersinia pestis Pestoides
           F]
 gi|153949540|ref|YP_001400870.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis IP 31758]
 gi|170024242|ref|YP_001720747.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis YPIII]
 gi|186895542|ref|YP_001872654.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis PB1/+]
 gi|51589774|emb|CAH21404.1| putative iron-sulfur protein [Yersinia pseudotuberculosis IP 32953]
 gi|145209883|gb|ABP39290.1| iron-sulfur protein [Yersinia pestis Pestoides F]
 gi|152961035|gb|ABS48496.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750776|gb|ACA68294.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186698568|gb|ACC89197.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 207

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIEM 164


>gi|307299479|ref|ZP_07579279.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914878|gb|EFN45265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 96

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M +V  + C  C  T C++ CPVD           I+   C  CG C   CPV+AI+P++
Sbjct: 1  MPWVREDLCTGC--TLCLKSCPVDGAIVMQGGKAHINNSLCTRCGDCFSACPVNAIRPNS 58

Query: 60 E 60
          E
Sbjct: 59 E 59


>gi|258405237|ref|YP_003197979.1| NIL domain-containing protein [Desulfohalobium retbaense DSM 5692]
 gi|257797464|gb|ACV68401.1| NIL domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 147

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             ++C+ C    C  +CP            +    ++C  CG C   CPV A++ D +  
Sbjct: 88  DEDSCVHC--GLCTALCPTQALSLDHETRHVLFDVEKCTACGACTRVCPVHAMRVDVDDT 145

Query: 63  LE 64
           L 
Sbjct: 146 LW 147


>gi|225620051|ref|YP_002721308.1| hypothetical protein BHWA1_01124 [Brachyspira hyodysenteriae WA1]
 gi|225214870|gb|ACN83604.1| Conserved hypothetical protein containing a ferredoxin domain
           [Brachyspira hyodysenteriae WA1]
          Length = 256

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  CK   C + CPV         + I  ++CI C  C   C   A
Sbjct: 181 TNKCNDCKL--CAKKCPVQAIDINNPKI-IDKNKCISCMRCVSICNSSA 226


>gi|188587026|ref|YP_001918571.1| Cobyrinic acid ac-diamide synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351713|gb|ACB85983.1| Cobyrinic acid ac-diamide synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 652

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 9/71 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + +  C  C    C +VC            E +    I P  C  CG C   C  DAIK 
Sbjct: 417 IDSNECSGC--GKCYQVCRFAAITFQEREGEDKQKYQIDPLNCEGCGACRLVCQSDAIKL 474

Query: 58  DTEPGLELWLK 68
           +       W K
Sbjct: 475 E-PAINGEWYK 484



 Score = 40.4 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  E C  C   +C ++C  +        + + P+ C  CG C   CP  AI+
Sbjct: 74  IDQEKCTGC--GECSQICVFNALVSINQEILLFPELCHACGACNLACPNSAIQ 124


>gi|153941336|ref|YP_001391085.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. Langeland]
 gi|152937232|gb|ABS42730.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. Langeland]
 gi|295319132|gb|ADF99509.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. 230613]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|148379790|ref|YP_001254331.1| hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|153933959|ref|YP_001384087.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
          str. ATCC 19397]
 gi|153936361|ref|YP_001387627.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
          str. Hall]
 gi|148289274|emb|CAL83370.1| putative hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|152930003|gb|ABS35503.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
          str. ATCC 19397]
 gi|152932275|gb|ABS37774.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
          str. Hall]
 gi|322806068|emb|CBZ03635.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 1  MNYIDISGLNCKNCYK--CLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|119595091|gb|EAW74685.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_a [Homo
           sapiens]
          Length = 175

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 108 EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165


>gi|146303970|ref|YP_001191286.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Metallosphaera sedula DSM 5348]
 gi|145702220|gb|ABP95362.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Metallosphaera sedula DSM 5348]
          Length = 362

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP-VDAIKPDT 59
             V  + CI C    C   CP  CF +       I  D C+ CG+C   CP  + I    
Sbjct: 262 PTVDFDACIKCDL--CWVYCPDGCFDKTPEGYYDIAYDYCVGCGICAEVCPVKNCIVMVD 319

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSA 90
           E  L  +      Y+    N    K+ L +A
Sbjct: 320 EKRLPDYT---RPYSMWKANKAEYKKWLQNA 347


>gi|83311764|ref|YP_422028.1| ferredoxin [Magnetospirillum magneticum AMB-1]
 gi|82946605|dbj|BAE51469.1| Ferredoxin [Magnetospirillum magneticum AMB-1]
          Length = 669

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++ CP        +  A+    C   G C   CP  AI+ D   G  ++ ++
Sbjct: 286 TRCLDACPSGALSPQGDAAAVDAHVCGGHGPCASVCPTGAIRFDVPAGNGVYTRL 340



 Score = 38.0 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    C LC    CV  CP      +  +  L I    C+ CG+C   CP  A+
Sbjct: 514 VDQAKCTLC--MACVSACPAKALSGHPDKPSLGILEVNCVQCGLCRVTCPEKAV 565


>gi|15668758|ref|NP_247557.1| iron-sulfer cluster binding protein [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2494450|sp|Q57998|Y578_METJA RecName: Full=Uncharacterized protein MJ0578
 gi|1591285|gb|AAB98569.1| iron-sulfer cluster binding protein [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 276

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + ++CI C    C++VC  D    G+    I+P  C  CG CE  C  DAI
Sbjct: 70  YEINDDCIRC--GKCLDVCQFDA--IGDFK--INPILCEGCGACELICEFDAI 116


>gi|116748269|ref|YP_844956.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Syntrophobacter fumaroxidans MPOB]
 gi|116697333|gb|ABK16521.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1126

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            +++  + C  C    C+++CP       E      ++   C  CG C   CP  A +   
Sbjct: 1051 SFIDPDICAGC--QGCIKLCPYSAIEFDERRGVSVVNEALCKGCGSCAGFCPSGAARVRH 1108

Query: 60   EPGLELWLKI 69
                +L+ +I
Sbjct: 1109 FSAKQLFAEI 1118



 Score = 36.5 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPV 23
           YV+ E C  C    C E CPV
Sbjct: 238 YVIEERCTGC--GLCAEACPV 256


>gi|329960092|ref|ZP_08298556.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328533044|gb|EGF59817.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 246

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V E CI C    C + CPV      +        +CI C  C   CP + I+ 
Sbjct: 179 FHVDEGCISC--GICAKSCPVGNISMTDGRPV-WRKQCIHCMACVHACPREVIQY 230


>gi|313148455|ref|ZP_07810648.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           fragilis 3_1_12]
 gi|313137222|gb|EFR54582.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           fragilis 3_1_12]
          Length = 289

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C ++CPV    +G+       + CI C  C   CP  A   DT 
Sbjct: 222 CTHC--GACAKMCPVSAIIKGDELNT-DAERCIKCCACVKGCPQKARVYDTP 270


>gi|310780423|ref|YP_003968755.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
           polytropus DSM 2926]
 gi|309749746|gb|ADO84407.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
           polytropus DSM 2926]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           YV T+ NC  C    C +VCPVD     +    I   D+C  C  C   CP  AI    E
Sbjct: 185 YVYTDENCTGC--GLCAKVCPVDNIIVDKENKKIALQDKCFGCFACIQNCPSRAIHIRGE 242

Query: 61  PGLELW 66
                +
Sbjct: 243 VNGNRY 248


>gi|304310899|ref|YP_003810497.1| hypothetical protein HDN1F_12610 [gamma proteobacterium HdN1]
 gi|301796632|emb|CBL44844.1| hypothetical protein HDN1F_12610 [gamma proteobacterium HdN1]
          Length = 127

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
           V  + C  C+   CVEVCP +     +            CI CG C   C  D I
Sbjct: 49  VDNDGCNGCEL--CVEVCPGNALEMIDKKAVAMISDSACCIGCGACIAICLPDVI 101


>gi|240948947|ref|ZP_04753303.1| nitrate reductase, Fe-S protein [Actinobacillus minor NM305]
 gi|240296762|gb|EER47373.1| nitrate reductase, Fe-S protein [Actinobacillus minor NM305]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       +      C+ C  C   CP        E
Sbjct: 93  QSCQHCSNAPCVSVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPE 148


>gi|210634658|ref|ZP_03298210.1| hypothetical protein COLSTE_02134 [Collinsella stercoris DSM 13279]
 gi|210158730|gb|EEA89701.1| hypothetical protein COLSTE_02134 [Collinsella stercoris DSM 13279]
          Length = 260

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C +C    C   CP        +    + P++C+ CG C   CP      +TE  
Sbjct: 147 ACHMCTTALCQTSCPHGAIVTMDDGTRTVDPEKCVGCGTCVAACPWHMPVVNTETH 202



 Score = 38.0 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C+ C    CV  CP                +C+ CG C  +CP  A+
Sbjct: 175 VDPEKCVGC--GTCVAACPWHMPVVNTETHK--STKCVACGRCADQCPNGAL 222


>gi|319425371|gb|ADV53445.1| cytochrome c oxidase accessory protein CcoG [Shewanella
           putrefaciens 200]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C    +K D +  L  ++ 
Sbjct: 291 CVDC--HLCVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKQNLIGYMS 343

Query: 69  IN 70
            N
Sbjct: 344 EN 345


>gi|118617954|ref|YP_906286.1| NADH dehydrogenase subunit I [Mycobacterium ulcerans Agy99]
 gi|183981490|ref|YP_001849781.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone
           oxidoreductase chain I) [Mycobacterium marinum M]
 gi|156633531|sp|A0PR46|NUOI_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737404|sp|B2HGE0|NUOI_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118570064|gb|ABL04815.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone
           oxidoreductase chain I) [Mycobacterium ulcerans Agy99]
 gi|183174816|gb|ACC39926.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone
           oxidoreductase chain I) [Mycobacterium marinum M]
          Length = 181

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTDEQRFSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|126699129|ref|YP_001088026.1| putative iron-sulfur protein [Clostridium difficile 630]
 gi|255306494|ref|ZP_05350665.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255]
 gi|115250566|emb|CAJ68390.1| putative iron-sulfur protein [Clostridium difficile]
          Length = 382

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C E CP      G     I   +CI C  C   CP  AI
Sbjct: 326 CIKC--GKCKEACPASTIEIGTKGAIIDLSKCIRCYCCHELCPKKAI 370


>gi|91793219|ref|YP_562870.1| electron transport complex protein RnfB [Shewanella denitrificans
           OS217]
 gi|91715221|gb|ABE55147.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           denitrificans OS217]
          Length = 205

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGAGKLMHTVIAADCTGCDLCVEPCPVDCIDM 161


>gi|70607960|ref|YP_256830.1| pyruvate synthase delta chain [Sulfolobus acidocaldarius DSM 639]
 gi|68568608|gb|AAY81537.1| pyruvate synthase delta chain [Sulfolobus acidocaldarius DSM 639]
          Length = 88

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V    CI CK   C   CP          + +  + C  CGVC   CPV AI   +E
Sbjct: 31 PVVDLSKCIGCK--ACFMFCPESTIVPKGGKVTVDYEYCKGCGVCSNVCPVKAISMVSE 87


>gi|308273558|emb|CBX30160.1| hypothetical protein N47_D29690 [uncultured Desulfobacterium sp.]
          Length = 168

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C+  C        ++ + +   D+CI C  C   CP   I    E  
Sbjct: 63  CRHCEDAPCMHACISGAIIRTQDGVVLTDKDKCIGCWTCVMVCPYGVIGRHMEEH 117


>gi|302389910|ref|YP_003825731.1| aldo/keto reductase [Thermosediminibacter oceani DSM 16646]
 gi|302200538|gb|ADL08108.1| aldo/keto reductase [Thermosediminibacter oceani DSM 16646]
          Length = 315

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + C  C    CVE C  +     E    ++ + C  CG C   CP   I
Sbjct: 264 IEDWCEGC--GRCVEKCGFNALSLEEGRAVVNSERCTLCGYCGGVCPEFCI 312


>gi|294102605|ref|YP_003554463.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aminobacterium colombiense DSM 12261]
 gi|293617585|gb|ADE57739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aminobacterium colombiense DSM 12261]
          Length = 57

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  + C+ C+   CV  CPV+     +    +  D CI+CG C   CPV+AI
Sbjct: 4  AVVDKDACVGCE--TCVGACPVEAISMVDGKAEVDADTCIECGSCVSVCPVNAI 55


>gi|311232944|gb|ADP85798.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 170

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C + CP   + + +   + +    CI CG C   CPVDA+  D E
Sbjct: 54  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGE 106



 Score = 41.1 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C    C E CPVD  +         P  CI CG C   CP + I+   +P  
Sbjct: 81  VDRSLCIRC--GRCAEACPVDAVHMDGETGL--PYVCIHCGRCVAFCPHECIELVDQPVA 136

Query: 64  EL 65
           + 
Sbjct: 137 DA 138


>gi|255100556|ref|ZP_05329533.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42]
          Length = 382

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C E CP      G     I   +CI C  C   CP  AI
Sbjct: 326 CIKC--GKCKEACPASTIEIGTKGAIIDLSKCIRCYCCHELCPKKAI 370


>gi|153938544|ref|YP_001391087.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. Langeland]
 gi|152934440|gb|ABS39938.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. Langeland]
          Length = 579

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 1  MTYVV--TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+     NC  C    C+  CPV       +   I  + CI CG C   CP +A
Sbjct: 1  MDYINFKKANCKNCYK--CLRSCPVKAIKFKNHQAKIEMERCILCGRCVLVCPQNA 54


>gi|219848433|ref|YP_002462866.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aggregans DSM 9485]
 gi|219542692|gb|ACL24430.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aggregans DSM 9485]
          Length = 1036

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
            Y++   C  C+   C  VCPV    ++ E    +  + C+    C   CP  
Sbjct: 854 AYLMPMTCAHCEKAPCELVCPVAATVHDAEGINNMVYNRCVGTKYCSNNCPFK 906


>gi|323698572|ref|ZP_08110484.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio sp. ND132]
 gi|323458504|gb|EGB14369.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans ND132]
          Length = 365

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C++  C  +CP     +  N L  I PD C+    C   CP  
Sbjct: 131 IPRRCMHCQNPPCANMCPFGAANKQVNGLTRISPDLCMGGAKCRTVCPWH 180


>gi|319787565|ref|YP_004147040.1| electron transport complex, RnfABCDGE type subunit beta
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466077|gb|ADV27809.1| electron transport complex, RnfABCDGE type, B subunit
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 141

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             V+  +CI C  T C++ CPVD    G +    +    C  C +C P CPVD I  +  
Sbjct: 81  AVVIEADCIGC--TKCIQACPVDAIIGGAKLMHVVLDPLCTGCELCVPACPVDCIVMEPA 138

Query: 61  P 61
           P
Sbjct: 139 P 139


>gi|283851568|ref|ZP_06368848.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283573102|gb|EFC21082.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 351

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   C V  F + E    +     C+ C  C   CP +    + +
Sbjct: 108 CNHCMEPACASACFVRAFKKMETGAVVYDASVCVGCRYCMVACPFNIPAYEYD 160


>gi|257066810|ref|YP_003153066.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           prevotii DSM 20548]
 gi|256798690|gb|ACV29345.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C +VCP D  +  +    +  ++C+ CG C   CP + I
Sbjct: 143 CVGC--GSCEKVCPFDAIHVKDGVAVVDREKCVACGKCVATCPKNII 187


>gi|210616158|ref|ZP_03290961.1| hypothetical protein CLONEX_03180 [Clostridium nexile DSM 1787]
 gi|210149920|gb|EEA80929.1| hypothetical protein CLONEX_03180 [Clostridium nexile DSM 1787]
          Length = 571

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  C V           I  + CI CG C   CP +A
Sbjct: 10 NCRHCYK--CVRNCSVKAISVRNEQAHIIREACIHCGHCLEVCPQNA 54



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF 32
           +++ E CI C    C+EVCP +      + 
Sbjct: 33 AHIIREACIHC--GHCLEVCPQNAKTFSSDM 61


>gi|148240626|ref|YP_001226013.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7803]
 gi|156632628|sp|A5GP51|NDHI_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|147849165|emb|CAK24716.1| NAD(P)H-quinone oxidoreductase subunit I [Synechococcus sp. WH
           7803]
          Length = 218

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|120603320|ref|YP_967720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|120563549|gb|ABM29293.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
          Length = 170

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C + CP   + + +   + +    CI CG C   CPVDA+  D E
Sbjct: 54  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGE 106



 Score = 41.1 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C    C E CPVD  +         P  CI CG C   CP + I+   +P  
Sbjct: 81  VDRSLCIRC--GRCAEACPVDAVHMDGETGL--PYVCIHCGRCVAFCPHECIELVDQPVA 136

Query: 64  EL 65
           + 
Sbjct: 137 DA 138


>gi|222054690|ref|YP_002537052.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563979|gb|ACM19951.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           C  C    C+  C V+ + + +    I +P  C+ C  C   CP +
Sbjct: 107 CNHCNEPACLTSCFVNAYTKTKEGAVIYNPKICVGCRNCMIACPFN 152


>gi|83589813|ref|YP_429822.1| aldo/keto reductase [Moorella thermoacetica ATCC 39073]
 gi|83572727|gb|ABC19279.1| Aldo/keto reductase [Moorella thermoacetica ATCC 39073]
          Length = 337

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           VV   C       C+E C  D          I+  +C+ CG C   CP  AI+ 
Sbjct: 285 VVETVCAG--DGACLEACTNDAITMVNGKARINRAKCLLCGYCTEVCPQFAIRM 336


>gi|325121371|gb|ADY80894.1| putative iron-sulfur protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 89  EDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|300118156|ref|ZP_07055904.1| respiratory nitrate reductase beta subunit [Bacillus cereus SJ1]
 gi|298724467|gb|EFI65161.1| respiratory nitrate reductase beta subunit [Bacillus cereus SJ1]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|282859228|ref|ZP_06268350.1| ferredoxin [Prevotella bivia JCVIHMP010]
 gi|282588047|gb|EFB93230.1| ferredoxin [Prevotella bivia JCVIHMP010]
          Length = 55

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV+   EG+   +I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIAC--GTCIDECPVEAISEGD-IYSIDADACTECGTCASVCPNEAI 52


>gi|256830116|ref|YP_003158844.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579292|gb|ACU90428.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 669

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +++  + C+ CK   C+ +CP     F E  +   I+   C  CG C   CP  A +   
Sbjct: 576 SWINPDICVGCKM--CIGLCPYSAIEFDERRHIAVINEAMCKGCGSCAGHCPSGAAQIKH 633

Query: 60  EPGLELWLKI 69
              ++++ +I
Sbjct: 634 FRQVQVFNEI 643



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 25/87 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECID-- 42
           YV  + C  C    C+E CP     E E  L                   I  + C    
Sbjct: 238 YVREDICTGC--GACLEKCPTKVVSEFEEGLGMRRAIYRNSPQAVPSTPVIDAEHCKMLT 295

Query: 43  ---CGVCEPECPVDAIKPDTEPGLELW 66
              CG+C+  CP  AI    +   E++
Sbjct: 296 KGKCGICQKTCPTGAIDFTQQDRKEVY 322


>gi|225620720|ref|YP_002721978.1| ferredoxin [Brachyspira hyodysenteriae WA1]
 gi|225215540|gb|ACN84274.1| ferredoxin [Brachyspira hyodysenteriae WA1]
          Length = 275

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T  C  CK   C  VCP+      +    +   +CI CG C  +CP      D E  L
Sbjct: 200 VDTSKCTNCK--TCAHVCPLASIDFDDITKYV--GKCIKCGACIKKCPEHCRYYDDEGFL 255

Query: 64  ELWLKINSEY 73
                +  E+
Sbjct: 256 YHQHDLEDEF 265


>gi|169351255|ref|ZP_02868193.1| hypothetical protein CLOSPI_02034 [Clostridium spiroforme DSM
          1552]
 gi|169292317|gb|EDS74450.1| hypothetical protein CLOSPI_02034 [Clostridium spiroforme DSM
          1552]
          Length = 386

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          NC  C    CV+ CP+D        + I  ++CI+C +C   C   
Sbjct: 11 NCKKCIK--CVKECPMDAISIVNEQVIIDENKCINCDICIQACNQK 54


>gi|154501091|ref|ZP_02039129.1| hypothetical protein BACCAP_04779 [Bacteroides capillosus ATCC
           29799]
 gi|150269919|gb|EDM97447.1| hypothetical protein BACCAP_04779 [Bacteroides capillosus ATCC
           29799]
          Length = 597

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V T  C+ CK   C+ + CP     +G+    +    C+ CGVC+  C  DA++
Sbjct: 543 VDTSKCVGCK--ACMRIGCPAISVRDGKAG--VDVTLCVGCGVCQQLCKFDALQ 592


>gi|186476850|ref|YP_001858320.1| ferredoxin [Burkholderia phymatum STM815]
 gi|184193309|gb|ACC71274.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           phymatum STM815]
          Length = 291

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +    I  + C  C +C P CPVD I  
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|254975082|ref|ZP_05271554.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26]
 gi|255092471|ref|ZP_05321949.1| putative iron-sulfur protein [Clostridium difficile CIP 107932]
 gi|255314210|ref|ZP_05355793.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55]
 gi|255516888|ref|ZP_05384564.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34]
 gi|255649989|ref|ZP_05396891.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79]
 gi|260683140|ref|YP_003214425.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260686738|ref|YP_003217871.1| putative iron-sulfur protein [Clostridium difficile R20291]
 gi|306520065|ref|ZP_07406412.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58]
 gi|260209303|emb|CBA62685.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260212754|emb|CBE03883.1| putative iron-sulfur protein [Clostridium difficile R20291]
          Length = 382

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C E CP      G     I   +CI C  C   CP  AI
Sbjct: 326 CIKC--GKCKEACPASTIEIGTKGAIIDLSKCIRCYCCHELCPKKAI 370


>gi|47527420|ref|YP_018769.1| respiratory nitrate reductase subunit beta [Bacillus anthracis str.
           'Ames Ancestor']
 gi|165870232|ref|ZP_02214888.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0488]
 gi|190567955|ref|ZP_03020866.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815054|ref|YP_002815063.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. CDC 684]
 gi|47502568|gb|AAT31244.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|164714120|gb|EDR19641.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0488]
 gi|190561010|gb|EDV14984.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003218|gb|ACP12961.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. CDC 684]
          Length = 453

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 144 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYVNWQTNKAE 202


>gi|315453245|ref|YP_004073515.1| NADH-quinone oxidoreductase subunit I [Helicobacter felis ATCC
           49179]
 gi|315132297|emb|CBY82925.1| NADH-quinone oxidoreductase subunit I [Helicobacter felis ATCC
           49179]
          Length = 207

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 74  NERCIGC--GLCEKICTSNCIRIITHKGEDERKHIDSYTINLGRCIYCGLCAEVCPELAI 131

Query: 56  KP 57
             
Sbjct: 132 VM 133


>gi|295109922|emb|CBL23875.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           obeum A2-162]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP       +    I  D+C +CG C+  CP   I
Sbjct: 218 CIGCKK--CEKTCPNGAITVTDFCAHIDYDKCTNCGACKEACPRHVI 262



 Score = 38.8 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+      CV+ CP D  +       ++ + C  CG C  +CP   I
Sbjct: 144 CMG--FGSCVKACPFDAIHIVNGVAVVNREACKACGKCIAKCPHHLI 188


>gi|293608863|ref|ZP_06691166.1| electron transport complex [Acinetobacter sp. SH024]
 gi|292829436|gb|EFF87798.1| electron transport complex [Acinetobacter sp. SH024]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 89  EDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|238028672|ref|YP_002912903.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
          [Burkholderia glumae BGR1]
 gi|237877866|gb|ACR30199.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia glumae BGR1]
          Length = 89

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPGKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ S+Y
Sbjct: 59 IPRD-PQHAETHAQLMSKY 76


>gi|30061070|gb|AAP19909.1| nitrite reductase [Haemophilus influenzae]
 gi|30061072|gb|AAP19910.1| nitrite reductase [Haemophilus influenzae]
 gi|30061096|gb|AAP19922.1| nitrite reductase [Haemophilus influenzae]
 gi|30061100|gb|AAP19924.1| nitrite reductase [Haemophilus influenzae]
 gi|30061104|gb|AAP19926.1| nitrite reductase [Haemophilus influenzae]
          Length = 135

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
          ++C  C +  CV VCP    +  +    +   +  CI C  C   CP  
Sbjct: 38 QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPYR 86


>gi|85858318|ref|YP_460520.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB]
 gi|85721409|gb|ABC76352.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB]
          Length = 939

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE----NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C+ C    C  VC        E        ++P  C   G+C   CP  AI    
Sbjct: 859 VDEKRCMGC--GACASVCTYGAIEMRETKQGRKATMNPVLCKGDGLCNAMCPTGAISLRH 916

Query: 60  EPGLELWLKINS 71
               EL  +I++
Sbjct: 917 YTEDELLAQIDA 928



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 24/85 (28%), Gaps = 24/85 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECI--- 41
           Y++ + C  C  T CVE CPV         +                   I         
Sbjct: 21  YIIEDKCSGC--TTCVEYCPVVYPDVYNQEISKNKAVHVYFAQAIPLVTYIDESCLYLKE 78

Query: 42  -DCGVCEPECPVDAIKPDTEPGLEL 65
             C +CE  C  DAI     P    
Sbjct: 79  DKCRICEAVCKQDAIDFSQVPEQME 103


>gi|75906669|ref|YP_320965.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
          29413]
 gi|75700394|gb|ABA20070.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
          29413]
          Length = 529

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECP 51
          M Y +  N C+ C +  C   CP        N   I P  C +C        C   CP
Sbjct: 1  MPYTIPNNSCVGCDN--CRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACP 56


>gi|332795922|ref|YP_004457422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332693657|gb|AEE93124.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
          Length = 419

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 4   VVTENCI---LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+  NC+    C    CV  CP       E  + I  ++C  CG+C   CPV AI     
Sbjct: 104 VINSNCLSSLGCN--QCVTSCPQKAMSIVEGKVVIDENKCTYCGLCAASCPVGAINLSYP 161



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 6   TENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +NC LC    C+  CP         +   F+   P +C+ C  C   C  DAI
Sbjct: 281 NDNCTLC--GACIRKCPTRSLKYNIKDNNVFIEFTPSKCVGCNKCVNVCEEDAI 332


>gi|299771076|ref|YP_003733102.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp.
           DR1]
 gi|298701164|gb|ADI91729.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp.
           DR1]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 89  EDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|325676675|ref|ZP_08156350.1| NADH-quinone oxidoreductase subunit I [Rhodococcus equi ATCC 33707]
 gi|325552530|gb|EGD22217.1| NADH-quinone oxidoreductase subunit I [Rhodococcus equi ATCC 33707]
          Length = 181

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIGCGLCVEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|289578466|ref|YP_003477093.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
 gi|289528179|gb|ADD02531.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
          Length = 149

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV+ C      +      +    D+C+ C  C   C   AI  D
Sbjct: 60  CRHCDDAPCVKSCITGAMRKDPLTGVVTCDTDKCVGCWTCVLVCEFGAIIRD 111


>gi|258404666|ref|YP_003197408.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfohalobium retbaense DSM 5692]
 gi|257796893|gb|ACV67830.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfohalobium retbaense DSM 5692]
          Length = 286

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C + CP +          + P +C  CG C   CP   ++     G      
Sbjct: 215 CIGCSK--CKKECPEEAITMDNFLAVVDPAKCTGCGACIEVCPTGVMRSLLPEGQHPMHA 272

Query: 69  INSEYA 74
           + SE A
Sbjct: 273 VQSETA 278



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C     CV+ CP D  Y  +N L  + P +C  CG C   CP D
Sbjct: 139 GCLGLGTCVKNCPFDAMYMQDNGLPGVDPVKCTGCGKCVEICPRD 183



 Score = 33.4 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 18/71 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVD--------------CFYEGENFLA--IHPDECIDCGVCE 47
           V    C  C    CVE+CP D              C       +   +    CI C  C+
Sbjct: 165 VDPVKCTGC--GKCVEICPRDIPKLTPESQSTACLCCSHDMGKVVKSVCSAGCIGCSKCK 222

Query: 48  PECPVDAIKPD 58
            ECP +AI  D
Sbjct: 223 KECPEEAITMD 233


>gi|222109383|ref|YP_002551647.1| cytochrome c oxidase accessory protein ccog [Acidovorax ebreus
           TPSY]
 gi|221728827|gb|ACM31647.1| cytochrome c oxidase accessory protein CcoG [Acidovorax ebreus
           TPSY]
          Length = 470

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI CG+C   C     K     GL  +  
Sbjct: 265 CIDCSL--CVQVCPTGIDIRKGLQY-----ECIGCGMCVDACNTVMDKVQYPRGLIRYAT 317

Query: 69  IN 70
            N
Sbjct: 318 QN 319


>gi|219850884|ref|YP_002465316.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
 gi|219545143|gb|ACL15593.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
          Length = 301

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C   C  +        + +  + C+ CG+C   CP + IK D     
Sbjct: 166 CTGC--GTCAHHCKEEAIRISGGKVVLDQERCMLCGMCVSPCPFEIIKADPPEYQ 218


>gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040538|gb|ACT57334.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 163

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDC--------FYEGENFLA---IHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP            ++G        I   +CI CG+C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K+  L +  + +  
Sbjct: 118 IV--EGPNFEFATETRQEL------YYDKERLLNNGDRWESE 151


>gi|188587996|ref|YP_001922032.1| anaerobic sulfite reductase subunit C [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498277|gb|ACD51413.1| anaerobic sulfite reductase subunit C [Clostridium botulinum E3
           str. Alaska E43]
          Length = 285

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V + C+ C    CV+ C        +  +  + D C+DCG C   C + A
Sbjct: 162 FVLDKCVGC--GLCVKACRQKALEVVDKKIVHNKDLCVDCGGCVRACKLGA 210


>gi|121592579|ref|YP_984475.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120604659|gb|ABM40399.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
          Length = 470

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI CG+C   C     K     GL  +  
Sbjct: 265 CIDCSL--CVQVCPTGIDIRKGLQY-----ECIGCGMCVDACNTVMDKVQYPRGLIRYAT 317

Query: 69  IN 70
            N
Sbjct: 318 QN 319


>gi|78356122|ref|YP_387571.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218527|gb|ABB37876.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 148

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+  +CV+VCP       E +  + +  + CI C  C   CP  
Sbjct: 59  CYHCETPECVDVCPTGAMIRRESDGIVYVDQETCIGCEACIDACPWH 105


>gi|20807786|ref|NP_622957.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|20516343|gb|AAM24561.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
          Length = 72

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          ++ + C  C    CVE CPV      +  +  I  D CI CG+CE  CP  AI  + +  
Sbjct: 7  IIEDWCKGC--GICVEFCPVRVLEIKDGKVRLIDEDRCIKCGLCEMRCPDFAIYLEVKKD 64

Query: 63 LE 64
          +E
Sbjct: 65 VE 66


>gi|288931276|ref|YP_003435336.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Ferroglobus placidus DSM 10642]
 gi|288893524|gb|ADC65061.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Ferroglobus placidus DSM 10642]
          Length = 97

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +V  E CI C    CV+ CP  C      +G     +  D C  CG+C   CPV+AI+ 
Sbjct: 29 AFVDEEKCIGC--GRCVKFCPEPCIELVEKDGNKVAKVDHDYCKGCGICASVCPVNAIRM 86

Query: 58 DTEPGLE 64
          +T+   +
Sbjct: 87 ETKEIYK 93


>gi|255319168|ref|ZP_05360386.1| electron transport complex, rnfaBcdge type, b subunit
           [Acinetobacter radioresistens SK82]
 gi|262379300|ref|ZP_06072456.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164]
 gi|255303814|gb|EET83013.1| electron transport complex, rnfaBcdge type, b subunit
           [Acinetobacter radioresistens SK82]
 gi|262298757|gb|EEY86670.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164]
          Length = 266

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
             +  + CI C  T C+  CPVD     G+    +  D C  C +C P CPVD I
Sbjct: 85  AVIREDECIGC--TKCISACPVDAIIGSGKLMHTVLTDLCTGCELCIPPCPVDCI 137


>gi|149922403|ref|ZP_01910837.1| Carbamoyltransferase [Plesiocystis pacifica SIR-1]
 gi|149816765|gb|EDM76255.1| Carbamoyltransferase [Plesiocystis pacifica SIR-1]
          Length = 1175

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVDAI 55
           V    C+     DCV +CP       E           I    C+ C +C   C V+A+
Sbjct: 515 VDESRCVG--SGDCVRICPTGAVSFAEPSSEGARRLPVIDASACVRCQLCVERCEVEAL 571


>gi|7321243|emb|CAB82180.1| nitrate reductase beta-subunit [Pseudomonas stutzeri]
          Length = 327

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C   CP    Y+ E    +    ++C    +C   CP   I  + +
Sbjct: 168 CEHCLNPTCAASCPSGAIYKREEDGIVLFDQEKCRGWRMCISGCPYQQIYFNWK 221


>gi|78067605|ref|YP_370374.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia sp. 383]
 gi|77968350|gb|ABB09730.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia sp.
          383]
          Length = 88

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHDESHAQLMEKY 76


>gi|107023739|ref|YP_622066.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
          AU 1054]
 gi|116690826|ref|YP_836449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia cenocepacia HI2424]
 gi|170734151|ref|YP_001766098.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia cenocepacia MC0-3]
 gi|254247173|ref|ZP_04940494.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
          PC184]
 gi|105893928|gb|ABF77093.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
          cenocepacia AU 1054]
 gi|116648915|gb|ABK09556.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia cenocepacia HI2424]
 gi|124871949|gb|EAY63665.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
          PC184]
 gi|169817393|gb|ACA91976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia cenocepacia MC0-3]
          Length = 88

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHDESHAQLMEKY 76


>gi|310658269|ref|YP_003935990.1| hypothetical protein CLOST_0962 [Clostridium sticklandii DSM 519]
 gi|308825047|emb|CBH21085.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 378

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            V   CI C    C   CP +     +N   ++  +CI C  C   CP DA+ 
Sbjct: 317 FVHSKCISC--GHCKRNCPANVISMVDNKPVVNLKDCISCFCCHEVCPADAVN 367


>gi|291326610|ref|ZP_06125138.2| putative pyruvate formate-lyase activating enzyme [Providencia
           rettgeri DSM 1131]
 gi|291313711|gb|EFE54164.1| putative pyruvate formate-lyase activating enzyme [Providencia
           rettgeri DSM 1131]
          Length = 316

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIH-PDECIDCGVCEPECPVDA--IKPD 58
           + C+ C    CV+VCP    Y+     GE    ++   +CI C  CE  C   A  I   
Sbjct: 58  DKCVNC--GKCVDVCPTGIHYKTINEQGEQIHRVNRSIDCIGCRKCEEVCIGGALDIMGK 115

Query: 59  TEPGLELWLKINSEY 73
                E+   I  +Y
Sbjct: 116 DVTVAEMMDIIMQDY 130


>gi|220904512|ref|YP_002479824.1| ferredoxin [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868811|gb|ACL49146.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +CI   + DCV+ CP +        + +  D+C  CG C   CP   ++ 
Sbjct: 139 SCIG--YGDCVQACPFNAMRIVNGLVEVDQDKCTGCGTCVNVCPRGVLEM 186



 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-VCEPECPVDAIKP 57
           CI C    CV+ CP       ++ + I    C+  G  C+  C     + 
Sbjct: 214 CIKCLK--CVKACPAKAVSMVDDRIEIDHLLCLSYGPACQEACVSSCPRH 261



 Score = 35.0 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 18/73 (24%)

Query: 4   VVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGVCE 47
           V  + C  C    CV VCP              V C    +        +  CI C  C 
Sbjct: 164 VDQDKCTGC--GTCVNVCPRGVLEMTPLRARVAVYCNTREKLRAVSDVCKVGCIKCLKCV 221

Query: 48  PECPVDAIKPDTE 60
             CP  A+    +
Sbjct: 222 KACPAKAVSMVDD 234


>gi|209548872|ref|YP_002280789.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226737409|sp|B5ZYM2|NUOI_RHILW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209534628|gb|ACI54563.1| NADH-quinone oxidoreductase, chain I [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 163

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 60  EERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDA 117

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           I     P  E   +   E          K   L +  + +  
Sbjct: 118 IV--EGPNFEFATETREEL------YFDKARLLDNGDRWERE 151


>gi|159905698|ref|YP_001549360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887191|gb|ABX02128.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 132

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           M     E CI C    CV  CPV       E  + +  +ECI C  C   CPV+AI
Sbjct: 74  MIQKDDEKCIDC--GACVVHCPVGALSVDSEFKILLDEEECIGCKNCAKICPVNAI 127


>gi|85859240|ref|YP_461442.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB]
 gi|85722331|gb|ABC77274.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB]
          Length = 939

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE----NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C+ C    C  VC        E        ++P  C   G+C   CP  AI    
Sbjct: 859 VDEKRCMGC--GACASVCTYGAIEMRETKQGRKATMNPVLCKGDGLCNAMCPTGAISLRH 916

Query: 60  EPGLELWLKINS 71
               EL  +I++
Sbjct: 917 YTEDELLAQIDA 928



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 24/85 (28%), Gaps = 24/85 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECI--- 41
           Y++ + C  C  T CVE CPV         +                   I         
Sbjct: 21  YIIEDKCSGC--TTCVEYCPVVYPDVYNQEISKNKAVHVYFAQAIPLVTYIDESCLYLKE 78

Query: 42  -DCGVCEPECPVDAIKPDTEPGLEL 65
             C +CE  C  DAI     P    
Sbjct: 79  DKCRICEAVCKQDAIDFSQVPEQME 103


>gi|52143304|ref|YP_083525.1| respiratory nitrate reductase, beta subunit [Bacillus cereus E33L]
 gi|51976773|gb|AAU18323.1| respiratory nitrate reductase, beta subunit [Bacillus cereus E33L]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|15837149|ref|NP_297837.1| ferredoxin [Xylella fastidiosa 9a5c]
 gi|9105406|gb|AAF83357.1|AE003902_2 ferredoxin II [Xylella fastidiosa 9a5c]
          Length = 159

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 102 AWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCI 154


>gi|332669457|ref|YP_004452465.1| NADH-quinone oxidoreductase subunit I [Cellulomonas fimi ATCC 484]
 gi|332338495|gb|AEE45078.1| NADH-quinone oxidoreductase, chain I [Cellulomonas fimi ATCC 484]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 116 EKCIGCEL--CAWACPADAIYVEGADNTPDAQFSPGERYGRVYQINYLRCIFCGLCIEAC 173

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 174 PTRALTM 180


>gi|312139316|ref|YP_004006652.1| NADH dehydrogenase (quinone) chain i nuoi [Rhodococcus equi 103S]
 gi|311888655|emb|CBH47967.1| NADH dehydrogenase (quinone) chain I NuoI [Rhodococcus equi 103S]
          Length = 181

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIGCGLCVEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|301053670|ref|YP_003791881.1| respiratory nitrate reductase subunit beta [Bacillus anthracis CI]
 gi|300375839|gb|ADK04743.1| respiratory nitrate reductase, beta subunit [Bacillus cereus biovar
           anthracis str. CI]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|293372835|ref|ZP_06619213.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292632210|gb|EFF50810.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 253

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI CK   C + CPV               +C  C  C   CP  A++ 
Sbjct: 188 FYTTDACIGCK--RCEKSCPVGNIMMMGRKPV-WGMDCTSCLACYHVCPQHAVQY 239


>gi|269102198|ref|ZP_06154895.1| electron transport complex protein RnfB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162096|gb|EEZ40592.1| electron transport complex protein RnfB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 192

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+    
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAIHTVIKDECTGCKLCVAPCPTDCIEMITV 163

Query: 58  DTEPGLELW 66
           +  P    W
Sbjct: 164 EETPDTWKW 172


>gi|296126262|ref|YP_003633514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
           murdochii DSM 12563]
 gi|296018078|gb|ADG71315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
           murdochii DSM 12563]
          Length = 275

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T  C  CK   C  VCP+      +    +   +CI CG C  +CP      D E  L
Sbjct: 200 VDTSKCTNCK--TCAHVCPLASIDFDDITKYV--GKCIKCGACIKKCPEHCRYYDDEGFL 255

Query: 64  ELWLKINSEY 73
                +  ++
Sbjct: 256 YHQHDLEKQF 265


>gi|297583775|ref|YP_003699555.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142232|gb|ADH98989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 179

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
           +V   C+ C    CV+VC     +  E    +A +PD+C  C  C   CP DA
Sbjct: 53  IVPVQCMHCDDAPCVKVCSTQATFKVEENGIVAFNPDKCTGCKACMAACPYDA 105


>gi|150006536|ref|YP_001301280.1| hypothetical protein BVU_4056 [Bacteroides vulgatus ATCC 8482]
 gi|149934960|gb|ABR41658.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 255

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  TE CI CK   C +VCPV      +    +    C  C  C   CPV A++ 
Sbjct: 186 PFHTTEACIGCKK--CEKVCPVGNITVTDRP--VWGGNCTQCLACYHVCPVHAVEY 237


>gi|147677004|ref|YP_001211219.1| Fe-S-cluster-containing hydrogenase components 1 [Pelotomaculum
           thermopropionicum SI]
 gi|146273101|dbj|BAF58850.1| Fe-S-cluster-containing hydrogenase components 1 [Pelotomaculum
           thermopropionicum SI]
          Length = 271

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
            V + C+ C    C   C      +      + +   C+ C  C   CP   ++ + +  
Sbjct: 71  FVKKQCLHCLEPACASACFARALQKTPEGPVVYNEKLCVGCRYCMIACPFGILRFEWDKP 130

Query: 63  LELWLK 68
               LK
Sbjct: 131 FPRVLK 136


>gi|94269861|ref|ZP_01291586.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93451045|gb|EAT02004.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 684

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  CK   C  +CP     F E +    I+   C  CG C   CP+ AI
Sbjct: 614 VDQQCCTGCK--ICRNICPYRAIGFDEEKQVAVINRVLCRGCGTCAAACPLTAI 665


>gi|152977090|ref|YP_001376607.1| nitrate reductase, beta subunit [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025842|gb|ABS23612.1| nitrate reductase, beta subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|310779014|ref|YP_003967347.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926]
 gi|309748337|gb|ADO82999.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926]
          Length = 570

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          NC  C    CV  C V       +   I  D+CI CG C   CP +A    ++       
Sbjct: 10 NCKHCYK--CVRKCEVKAIKIENDQAHIMEDKCIACGQCFAICPQNARNIMSDLDFVK-- 65

Query: 68 KINSEYATQWPNIT 81
            N+  + +  NI+
Sbjct: 66 --NAISSGRNVNIS 77


>gi|294649835|ref|ZP_06727237.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824318|gb|EFF83119.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            + CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I
Sbjct: 93  EDECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCI 141


>gi|225864110|ref|YP_002749488.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           03BB102]
 gi|225787835|gb|ACO28052.1| respiratory nitrate reductase, beta subunit [Bacillus cereus
           03BB102]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|218705129|ref|YP_002412648.1| electron transport complex protein RnfB [Escherichia coli UMN026]
 gi|293405127|ref|ZP_06649119.1| electron transport complex protein RnfB [Escherichia coli FVEC1412]
 gi|293409939|ref|ZP_06653515.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298380775|ref|ZP_06990374.1| electron transport complex protein rnfB [Escherichia coli FVEC1302]
 gi|300901565|ref|ZP_07119634.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 198-1]
 gi|301026784|ref|ZP_07190188.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 69-1]
 gi|331663100|ref|ZP_08364010.1| electron transport complex protein RnfB [Escherichia coli TA143]
 gi|226735416|sp|B7NB82|RNFB_ECOLU RecName: Full=Electron transport complex protein rnfB
 gi|218432226|emb|CAR13116.1| putative iron-sulfur protein [Escherichia coli UMN026]
 gi|291427335|gb|EFF00362.1| electron transport complex protein RnfB [Escherichia coli FVEC1412]
 gi|291470407|gb|EFF12891.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298278217|gb|EFI19731.1| electron transport complex protein rnfB [Escherichia coli FVEC1302]
 gi|300355032|gb|EFJ70902.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 198-1]
 gi|300395322|gb|EFJ78860.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 69-1]
 gi|323968396|gb|EGB63802.1| electron transporter [Escherichia coli M863]
 gi|327252743|gb|EGE64397.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli STEC_7v]
 gi|331058899|gb|EGI30876.1| electron transport complex protein RnfB [Escherichia coli TA143]
          Length = 192

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP   I
Sbjct: 110 AFIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCI 162


>gi|217979763|ref|YP_002363910.1| cytochrome c oxidase accessory protein CcoG [Methylocella
           silvestris BL2]
 gi|217505139|gb|ACK52548.1| cytochrome c oxidase accessory protein CcoG [Methylocella
           silvestris BL2]
          Length = 492

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW-L 67
           CI C    CV VCP          L      CI CG+C   C     K D  P L  +  
Sbjct: 280 CIDC--GQCVAVCPTGVDIRQGPSL-----GCIQCGLCIDACDTVMAKIDRPPRLIAYDT 332

Query: 68  KIN 70
            +N
Sbjct: 333 DLN 335


>gi|118477563|ref|YP_894714.1| respiratory nitrate reductase subunit beta [Bacillus thuringiensis
           str. Al Hakam]
 gi|118416788|gb|ABK85207.1| respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           str. Al Hakam]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|71029698|ref|XP_764492.1| RNAse L inhibitor [Theileria parva strain Muguga]
 gi|68351446|gb|EAN32209.1| RNAse L inhibitor, putative [Theileria parva]
          Length = 636

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C   CPV                  I    CI CG+C  +CP +A
Sbjct: 24 VSTDKCKPKKCR-QECKRTCPVTKTGKQCIEVDPTSKIAFISEHLCIGCGICVKKCPFEA 82

Query: 55 I 55
          I
Sbjct: 83 I 83


>gi|261868638|ref|YP_003256560.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413970|gb|ACX83341.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  ++   +   +  C+ C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKDTGIVDVHKELCVGCQYCIAVCPYR 140


>gi|167746374|ref|ZP_02418501.1| hypothetical protein ANACAC_01083 [Anaerostipes caccae DSM 14662]
 gi|167654367|gb|EDR98496.1| hypothetical protein ANACAC_01083 [Anaerostipes caccae DSM 14662]
          Length = 257

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  E CI C    C + CP            I   +C+ CG C   CP +A+
Sbjct: 8  INAEKCIGC--GLCAKTCPEHNIIMKNKKAGILLQDCLMCGHCSSVCPKEAV 57


>gi|119094136|gb|ABL60966.1| iron-sulfur cluster-binding protein [uncultured marine bacterium
           HF10_19P19]
          Length = 669

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             C    C++VCP        + +AI P  C  CG+C   CP  A +    P  
Sbjct: 288 TGCS--RCLDVCPAGAIVVAGDHVAIDPAVCGGCGMCGAVCPSGAAQTAFPPID 339



 Score = 36.9 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + T+ C +C    CV  CP            L    D C+ CG+C   CP   I
Sbjct: 522 IDTDKCTICL--SCVGACPAGALQDNPDAPQLLFREDACLQCGICVATCPEKVI 573


>gi|120601294|ref|YP_965694.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|120561523|gb|ABM27267.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
          Length = 529

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           V   C+ C +  C  +CP        +    I    C+    C   CP  
Sbjct: 134 VPRRCLHCANPPCANLCPWGSARRETSGAVSIEASTCLGGAKCRTVCPWH 183


>gi|57239100|ref|YP_180236.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579047|ref|YP_197259.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617106|ref|YP_196305.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str. Gardel]
 gi|75507519|sp|Q5FHN1|NUOI_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81672815|sp|Q5HBF8|NUOI_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|57161179|emb|CAH58093.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416718|emb|CAI27831.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Gardel]
 gi|58417673|emb|CAI26877.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 168

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  +CP                       I   +CI CG C+  CPVDA
Sbjct: 65  EERCIACKL--CEAICPAQAITIEAQERDTDNSRRTVRYDIDMTKCIYCGFCQEACPVDA 122

Query: 55  I 55
           I
Sbjct: 123 I 123


>gi|332982270|ref|YP_004463711.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mahella australiensis 50-1 BON]
 gi|332699948|gb|AEE96889.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mahella australiensis 50-1 BON]
          Length = 146

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C++ C     +  E      + D+C+ C  C   CP  AIK + 
Sbjct: 60  CRHCDDAACIKSCITGAMHRDERGAVACNTDKCVGCWTCIMACPYGAIKRNE 111


>gi|325510868|gb|ADZ22504.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           acetobutylicum EA 2018]
          Length = 198

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL-W 66
            C  CK   C   CP       +    I  ++C+ C  C   C   AI       L   +
Sbjct: 45  KCRACK--ACANKCPQSAITVDK-KAKIDKNKCVGCASCMATCQFSAITNSWFASLTKSF 101

Query: 67  LKINSEYA 74
            +  +EYA
Sbjct: 102 NERLAEYA 109


>gi|269791992|ref|YP_003316896.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099627|gb|ACZ18614.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 592

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 4   VVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V    C+ CK   C+   CP     +G   + I   +C  CG+C   CP  AI  + E
Sbjct: 536 VDHSKCVKCK--SCIRPGCPAIAMKDG--VIVIDTAQCNGCGLCLQLCPKGAISREGE 589


>gi|218885304|ref|YP_002434625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756258|gb|ACL07157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 9   CILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   CPVD           + +   A+    C+ CG C  +CP  A++    
Sbjct: 359 CNGC--GLCERACPVDAVSLPVPPGGRKRDRRCAVDEAYCLGCGACALKCPTGALRLHPR 416

Query: 61  PG 62
             
Sbjct: 417 ER 418


>gi|166033231|ref|ZP_02236060.1| hypothetical protein DORFOR_02956 [Dorea formicigenerans ATCC
           27755]
 gi|166027588|gb|EDR46345.1| hypothetical protein DORFOR_02956 [Dorea formicigenerans ATCC
           27755]
          Length = 291

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C        +  + I  ++C +C  C   CP DA
Sbjct: 167 DDCIQC--GVCVKACREGALRMEDGKIVIDREKCNNCARCVKSCPTDA 212


>gi|218780880|ref|YP_002432198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762264|gb|ACL04730.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 366

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E+C+ C    C E C  +     E      ++PDECI CGVC   CP  A+K     
Sbjct: 288 VAGEDCVGC--GTCTERCFFNALTVDEETERAVVNPDECIGCGVCALGCPTGALKLQRLE 345

Query: 62  GLELW 66
               +
Sbjct: 346 RSTPF 350


>gi|147919298|ref|YP_686966.1| DNA-directed RNA polymerase subunit D [uncultured methanogenic
           archaeon RC-I]
 gi|110622362|emb|CAJ37640.1| DNA-directed RNA polymerase, subunit D [uncultured methanogenic
           archaeon RC-I]
          Length = 262

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V++ C  CK   C++ CP   F   +N L +    +C  C +C   C   AI    +   
Sbjct: 167 VSDKCDQCK--ACIDECPRGVFKIEKNKLVVTDQYKCSMCKLCVDVCDAGAIDVSADKKA 224

Query: 64  ELW 66
            ++
Sbjct: 225 FIF 227


>gi|34581178|ref|ZP_00142658.1| NADH dehydrogenase I chain I [Rickettsia sibirica 246]
 gi|28262563|gb|EAA26067.1| NADH dehydrogenase I chain I [Rickettsia sibirica 246]
          Length = 143

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 41  EERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 98

Query: 56  KPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMD 94
                         N E+A  T    I  K+  L +  + +
Sbjct: 99  VEGP----------NFEFASLTHTALIYDKERLLQNGDRWE 129


>gi|212212190|ref|YP_002303126.1| NADH dehydrogenase subunit I [Coxiella burnetii CbuG_Q212]
 gi|212010600|gb|ACJ17981.1| NADH-quinone oxidoreductase chain I [Coxiella burnetii CbuG_Q212]
          Length = 168

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI+CG CE  CPVDA
Sbjct: 65  EERCIACKL--CEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDA 122

Query: 55  I 55
           I
Sbjct: 123 I 123


>gi|220934170|ref|YP_002513069.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995480|gb|ACL72082.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 163

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 15/76 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  EERCIACKL--CEAVCPALAITIESEQRADGTRRTTRYDIDLFKCIFCGFCEEACPVDSI 118

Query: 56  KPDTEPGLELWLKINS 71
               E  L  +   N 
Sbjct: 119 ---VETHLFEYHFENR 131


>gi|163794803|ref|ZP_02188773.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159180076|gb|EDP64601.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 676

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C+++CP        + +++ P  C  CG+C   CP  AI         +  +I
Sbjct: 284 TGC--TRCLDLCPASAIAPAGDVVSVDPALCGGCGLCAGTCPTSAITYAYPDVQSVHQRI 341

Query: 70  NS 71
            +
Sbjct: 342 MA 343



 Score = 38.8 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           V TE C LC    CV  CP     +  +   +   E  C+ CG+C   CP   I  +
Sbjct: 517 VDTEGCTLCL--ACVSACPASALQDNPDKPQLLFQEDACVQCGLCAATCPEKVITLE 571


>gi|118443397|ref|YP_877569.1| ferredoxin [Clostridium novyi NT]
 gi|118133853|gb|ABK60897.1| ferredoxin [Clostridium novyi NT]
          Length = 285

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++  E CI C    C +VC  +   + +  + +    C  CG CE  C   A+     P
Sbjct: 66  PFIDDEKCINC--GKCAKVCQFNALVKTKKDIILFERLCHSCGACEIVCDTGALTYKKRP 123


>gi|160879965|ref|YP_001558933.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           phytofermentans ISDg]
 gi|160428631|gb|ABX42194.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           phytofermentans ISDg]
          Length = 287

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            E CILC    C +VC        +  + +  ++C  CG C   CP DA   DTE
Sbjct: 163 EEKCILC--GACEKVCRSHAITIKDGKVNVDYNKCNYCGRCAKSCPTDA--WDTE 213


>gi|30061074|gb|AAP19911.1| nitrite reductase [Haemophilus influenzae]
 gi|30061078|gb|AAP19913.1| nitrite reductase [Haemophilus influenzae]
 gi|30061084|gb|AAP19916.1| nitrite reductase [Haemophilus influenzae]
 gi|30061090|gb|AAP19919.1| nitrite reductase [Haemophilus influenzae]
          Length = 135

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
          ++C  C +  CV VCP    +  +    +   +  CI C  C   CP  
Sbjct: 38 QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPYR 86


>gi|49480592|ref|YP_036284.1| respiratory nitrate reductase subunit beta [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49332148|gb|AAT62794.1| respiratory nitrate reductase, beta subunit [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH
           [Geobacter metallireducens GS-15]
          Length = 635

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           ++  E C  C    C   CP +    G+     I  ++C  CG C   CP
Sbjct: 562 HIDPEKCKAC--GSCFRQCPAEAIQGGKKLIHIIDQEKCTKCGTCLDVCP 609


>gi|323978232|gb|EGB73318.1| electron transporter [Escherichia coli TW10509]
          Length = 192

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP   I
Sbjct: 110 AFIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCI 162


>gi|323697804|ref|ZP_08109716.1| NIL domain protein [Desulfovibrio sp. ND132]
 gi|323457736|gb|EGB13601.1| NIL domain protein [Desulfovibrio desulfuricans ND132]
          Length = 147

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +   + CI C    C  +CP D          +  + D+C  CG+C   CPV  +  D +
Sbjct: 85  FRDEDACIHC--GVCTAMCPTDALALDRETLKVVFNVDKCSACGMCTRVCPVKCMTLDMD 142

Query: 61  PG 62
             
Sbjct: 143 EN 144


>gi|260550717|ref|ZP_05824925.1| electron transport complex [Acinetobacter sp. RUH2624]
 gi|260406223|gb|EEW99707.1| electron transport complex [Acinetobacter sp. RUH2624]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 89  EDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|254410698|ref|ZP_05024476.1| 4Fe-4S binding domain protein [Microcoleus chthonoplastes PCC
          7420]
 gi|196182053|gb|EDX77039.1| 4Fe-4S binding domain protein [Microcoleus chthonoplastes PCC
          7420]
          Length = 537

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M Y ++++C  C    C   CP       +N   I P+ C +C    PE       P + 
Sbjct: 1  MAYKLSQSCTGCD--ICRTQCPTGAIKVKDNQTWIDPNLCNNCEGYYPEPQCVIHCPISS 58

Query: 61 P 61
          P
Sbjct: 59 P 59


>gi|149194346|ref|ZP_01871443.1| quinol dehydrogenase membrane component [Caminibacter
           mediatlanticus TB-2]
 gi|149135521|gb|EDM24000.1| quinol dehydrogenase membrane component [Caminibacter
           mediatlanticus TB-2]
          Length = 281

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y   ENC  C   +C+E+CP   V      +    I   EC +CG C   C  +A+K   
Sbjct: 208 YHNKENCTNC--GNCLEICPENQVLAPVINKKSDFISGIECTNCGRCIEVCNDNALKFSL 265

Query: 60  EPGLELWLKINSE 72
              +    + N +
Sbjct: 266 RYIISKKGEKNEK 278


>gi|71906705|ref|YP_284292.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
           RCB]
 gi|71846326|gb|AAZ45822.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
           aromatica RCB]
          Length = 451

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                +CI+CG+C   C    +K  +  GL  +  
Sbjct: 248 CIDC--GICVQVCPTGIDIRDGLQY-----QCINCGLCVDACDEVMLKIGSPTGLIRFAS 300

Query: 69  INSEYA 74
              E A
Sbjct: 301 -ERELA 305


>gi|21226713|ref|NP_632635.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1]
 gi|20905001|gb|AAM30307.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1]
          Length = 376

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            ++ T  C LCK   CV  C      E    L I+P++CI C  C   CP DA+
Sbjct: 309 PFINTSKCALCK--ACVLNCSAHAIEEMNKTLKINPEKCIQCYCCRELCPNDAV 360


>gi|15899535|ref|NP_344140.1| ferredoxin like protein (zfx-like2) [Sulfolobus solfataricus P2]
 gi|284173473|ref|ZP_06387442.1| ferredoxin like protein (zfx-like2) [Sulfolobus solfataricus
          98/2]
 gi|13816172|gb|AAK42930.1| Ferredoxin like protein (zfx-like2) [Sulfolobus solfataricus P2]
 gi|261601307|gb|ACX90910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          solfataricus 98/2]
          Length = 95

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 4  VVTENCILCK-----HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +    C+ C+        C+ VCP + +   +  + I  + C++CG C   CP   I   
Sbjct: 23 IDPNKCLRCEQVNGVPQPCIAVCPANVYSWIDQRIVISYENCVECGACRIACPYSNILWK 82

Query: 59 TE 60
            
Sbjct: 83 YP 84


>gi|312880247|ref|ZP_07740047.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM
           12260]
 gi|310783538|gb|EFQ23936.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM
           12260]
          Length = 387

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C+   C EVCPVD     +    +  + C+ C  C   CP  A+K    P    W+
Sbjct: 327 ACVRCR--VCQEVCPVDALAWDD-GPVVDSNRCVQCLCCHEMCPTGAMKAAANPLAR-WV 382

Query: 68  KINS 71
           +   
Sbjct: 383 QGMR 386


>gi|298480842|ref|ZP_06999037.1| ferredoxin [Bacteroides sp. D22]
 gi|298272865|gb|EFI14431.1| ferredoxin [Bacteroides sp. D22]
          Length = 253

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI CK   C + CPV               +C  C  C   CP  A++ 
Sbjct: 188 FYTTDACIGCK--RCEKSCPVGNIMMMGRKPV-WGMDCTSCLACYHVCPQHAVQY 239


>gi|295103696|emb|CBL01240.1| Uncharacterized Fe-S center protein [Faecalibacterium prausnitzii
           SL3/3]
          Length = 374

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C + C  D   Y  EN   I  D+C  CG C   C  DAI    +   EL  
Sbjct: 197 CRGC--HRCAKECGSDAITYNAENKAVIDYDKCKGCGRCIGACSFDAIYSPNDCANELLD 254

Query: 68  KINSEYAT 75
           +  +EYA 
Sbjct: 255 RKMAEYAA 262


>gi|254448470|ref|ZP_05061930.1| electron transport complex, rnfaBcdge type, b subunit [gamma
           proteobacterium HTCC5015]
 gi|198261853|gb|EDY86138.1| electron transport complex, rnfaBcdge type, b subunit [gamma
           proteobacterium HTCC5015]
          Length = 200

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
             +  E CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  +  
Sbjct: 110 AVIEEEGCIGC--TLCIQACPVDAILGAAKQMHTVITDECTGCELCVEPCPVDVITMEDI 167

Query: 60  EPGLELW 66
           +P  + W
Sbjct: 168 QPTTQTW 174



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           M  V+T+ C  C+   CVE CPVD     +        +
Sbjct: 139 MHTVITDECTGCEL--CVEPCPVDVITMEDIQPTTQTWK 175


>gi|189467441|ref|ZP_03016226.1| hypothetical protein BACINT_03830 [Bacteroides intestinalis DSM
           17393]
 gi|189435705|gb|EDV04690.1| hypothetical protein BACINT_03830 [Bacteroides intestinalis DSM
           17393]
          Length = 501

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + T  C  C    C   C   C     +   I    C+ C  C  +C   AI+ +  
Sbjct: 217 PVIDTSKCNGC--GLCARNCKAACIDSKNHK--IDYSRCVACMDCIGKCKKGAIRYERP 271



 Score = 33.8 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 5/44 (11%)

Query: 17  CVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  +CPV                I   +C  CG+C   C    I
Sbjct: 196 CNTICPVGTVLGFFSRFSLLKPVIDTSKCNGCGLCARNCKAACI 239



 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 14/67 (20%)

Query: 10  ILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPEC---PVDAIKP 57
           + C   +C   CPV                    ++ + CI CG CE  C   P  AI  
Sbjct: 435 VNC--GNCARHCPVAAIEMVPSEVDNPDSPKIPVVNVERCIGCGACENLCPARPFSAIYV 492

Query: 58  DTEPGLE 64
           +      
Sbjct: 493 EGHERHR 499


>gi|323141406|ref|ZP_08076297.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414155|gb|EFY04983.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 260

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C ++CP D     +  +A    +CI C  C   CP  A
Sbjct: 188 CTSC--GACAKICPTDAISNMDGKMATDAAKCILCMACIHACPKQA 231


>gi|294785473|ref|ZP_06750761.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_27]
 gi|294487187|gb|EFG34549.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_27]
          Length = 324

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A     +   
Sbjct: 172 DRCVAC--GACVKKCKKVSVEALKMENNKIVRDANKCIGCGECVINCPMSAWTRSPKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
           +L +     K N   A  W
Sbjct: 230 KLMIMGRTGKKNPRLAEDW 248


>gi|253582622|ref|ZP_04859843.1| iron-sulfur cluster-binding protein [Fusobacterium varium ATCC
           27725]
 gi|251835492|gb|EES64032.1| iron-sulfur cluster-binding protein [Fusobacterium varium ATCC
           27725]
          Length = 271

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            + C  CK   C EVCP+             P  CI C  C  +CP +A   D    L  
Sbjct: 198 NDKCTDCK--ICAEVCPMGSISFENVREV--PGICIKCCACIKKCPENAKYYDDAGYLYH 253

Query: 66  WLKINSEY 73
             ++  EY
Sbjct: 254 QHELEEEY 261


>gi|256827263|ref|YP_003151222.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor
           oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Cryptobacterium
           curtum DSM 15641]
 gi|256583406|gb|ACU94540.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor
           oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Cryptobacterium
           curtum DSM 15641]
          Length = 355

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPD 58
             V  + C  C    C   CP        +   +     + C  C VCE  CP DAI   
Sbjct: 258 PVVDAQRCTGCL--QCYLYCPDGAIKRTPSAAVVVSVDTEFCKGCAVCEQVCPFDAISMV 315

Query: 59  TEPGLEL 65
           +E  ++ 
Sbjct: 316 SEATIKQ 322


>gi|160944294|ref|ZP_02091523.1| hypothetical protein FAEPRAM212_01805 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444476|gb|EDP21480.1| hypothetical protein FAEPRAM212_01805 [Faecalibacterium prausnitzii
           M21/2]
          Length = 374

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C + C  D   Y  EN   I  D+C  CG C   C  DAI    +   EL  
Sbjct: 197 CRGC--HRCAKECGSDAITYNAENKAVIDYDKCKGCGRCIGACSFDAIYSPNDCANELLD 254

Query: 68  KINSEYAT 75
           +  +EYA 
Sbjct: 255 RKMAEYAA 262


>gi|330829802|ref|YP_004392754.1| Electron transport protein [Aeromonas veronii B565]
 gi|328804938|gb|AEB50137.1| Electron transport protein [Aeromonas veronii B565]
          Length = 199

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP +     +  + +  + CI C  C   CP  A+
Sbjct: 75  CRQCEDKPCAMACPNNAIVSEDGCVKVLQERCIGCKSCVVACPYGAM 121


>gi|322804288|emb|CBZ01838.1| iron-sulfur cluster-binding protein [Clostridium botulinum H04402
           065]
          Length = 387

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP     +D   +G+  +   +  +CI C  C+  CP  AI
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVIDMIKKGDKKIPVWNMKKCIRCFCCQELCPKGAI 371


>gi|319776679|ref|YP_004139167.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           influenzae F3047]
 gi|329124198|ref|ZP_08252745.1| thiosulfate reductase electron transporter phsb [Haemophilus
           aegyptius ATCC 11116]
 gi|317451270|emb|CBY87504.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           influenzae F3047]
 gi|327467623|gb|EGF13121.1| thiosulfate reductase electron transporter phsb [Haemophilus
           aegyptius ATCC 11116]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPYR 140


>gi|312136412|ref|YP_004003749.1| cob--com heterodisulfide reductase subunit a [Methanothermus
           fervidus DSM 2088]
 gi|311224131|gb|ADP76987.1| CoB--CoM heterodisulfide reductase subunit A [Methanothermus
           fervidus DSM 2088]
          Length = 681

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C  C    CVE+CP       E    +    C  CG C   CP  A+      
Sbjct: 603 ATVNEDICGGC--GVCVELCPFGAIELKEGKAHVTVALCKGCGTCAAACPSGAMDQKHFR 660

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 661 TQQIMAQIEAAL 672



 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV  + C  C    C+EVCP++     +                      I+ D CI+C 
Sbjct: 267 YVDEDLCTGC--GSCIEVCPIEVPNYFDEGMGMSKAIYIPFPQAVPLCATINKDYCIECN 324

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C+  C   AIK D +P    
Sbjct: 325 LCDQVCERGAIKHDQKPEEIE 345


>gi|301169808|emb|CBW29412.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           influenzae 10810]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPYR 140


>gi|257464938|ref|ZP_05629309.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           minor 202]
 gi|257450598|gb|EEV24641.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           minor 202]
          Length = 106

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDC 43
            Y ++ +C  C    C +VCP    ++ E+   I + + CI  
Sbjct: 60  AYYLSISCNHCSDPACTKVCPTGAMHKNEDGFVIVNEEICIGW 102


>gi|253742091|gb|EES98943.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
          [Giardia intestinalis ATCC 50581]
          Length = 277

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDE-CIDCGVCEPECPVDAIKP 57
          V  + CI C    CV+ CP  C    +    L     E CI CG C   C   AI  
Sbjct: 7  VDEDLCIGCN--VCVQGCPTQCIEVNKKTRKLVFRAKEACISCGHCASVCRTAAISM 61


>gi|225025860|ref|ZP_03715052.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353]
 gi|224956811|gb|EEG38020.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353]
          Length = 307

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +NC+ C   +C  VCP            I   +CI CG C   C   A++ 
Sbjct: 60  QNCVGC--GNCEVVCPTGASNLNVPG-KIDHTKCIACGKCIDVCYHRALEM 107


>gi|170761427|ref|YP_001785345.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408416|gb|ACA56827.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 387

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP     +D   +G+  +   +  +CI C  C+  CP  AI
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVIDMIKKGDKKIPVWNMKKCIRCFCCQELCPKGAI 371


>gi|126667294|ref|ZP_01738267.1| Polyferredoxin [Marinobacter sp. ELB17]
 gi|126628239|gb|EAZ98863.1| Polyferredoxin [Marinobacter sp. ELB17]
          Length = 475

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C +C   C     K +   GL  +  
Sbjct: 274 CIDC--GQCVQVCPTGIDIRDGLQY-----ECIGCALCIDACDDIMDKMNYPRGLIRYTT 326

Query: 69  INS 71
            N 
Sbjct: 327 ENE 329


>gi|111022880|ref|YP_705852.1| NADH dehydrogenase subunit I [Rhodococcus jostii RHA1]
 gi|123045604|sp|Q0S442|NUOI_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|110822410|gb|ABG97694.1| probable NADH dehydrogenase subunit I [Rhodococcus jostii RHA1]
          Length = 188

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 24/111 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTDEERFSPGERYGQVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKPDTEPGLELW------LKINSEYATQWPNITTKKESLPSAAKMDG 95
           P  A+    E  +          + +   A   P +      +   A  + 
Sbjct: 110 PTRALTMTNEYEMADDNRAGLIYEKDRLLAPLEPGMVESPHPMAPGATAED 160


>gi|68249625|ref|YP_248737.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 86-028NP]
 gi|145630156|ref|ZP_01785938.1| uridylate kinase [Haemophilus influenzae R3021]
 gi|145636484|ref|ZP_01792152.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae PittHH]
 gi|145640744|ref|ZP_01796327.1| uridylate kinase [Haemophilus influenzae R3021]
 gi|229843897|ref|ZP_04464038.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 6P18H1]
 gi|68057824|gb|AAX88077.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 86-028NP]
 gi|144984437|gb|EDJ91860.1| uridylate kinase [Haemophilus influenzae R3021]
 gi|145270309|gb|EDK10244.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae PittHH]
 gi|145274670|gb|EDK14533.1| uridylate kinase [Haemophilus influenzae 22.4-21]
 gi|229812891|gb|EEP48579.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 6P18H1]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPYR 140


>gi|324326183|gb|ADY21443.1| respiratory nitrate reductase subunit beta [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|317178438|dbj|BAJ56226.1| NADH dehydrogenase subunit I [Helicobacter pylori F30]
          Length = 220

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 596

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    C  C    C + CPV    +E +    I   +CI C  C   C  DAI
Sbjct: 545 VDEALCKKC--GQCFKACPVGAISWEKKQPAKIDLTKCIKCKTCIENCKFDAI 595


>gi|257468710|ref|ZP_05632804.1| sulfite reductase, subunit C [Fusobacterium ulcerans ATCC 49185]
 gi|317062965|ref|ZP_07927450.1| sulfite reductase [Fusobacterium ulcerans ATCC 49185]
 gi|313688641|gb|EFS25476.1| sulfite reductase [Fusobacterium ulcerans ATCC 49185]
          Length = 323

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 5   VTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ C    CV+ C    V+        +  + ++CI CGVC  +CP  A     E 
Sbjct: 168 DPDRCVNC--QACVKGCKSLSVNALSVENYKIVRNTEKCIGCGVCITKCPTRAFTRSKEK 225

Query: 62  GLE 64
             +
Sbjct: 226 YYK 228


>gi|297544742|ref|YP_003677044.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842517|gb|ADH61033.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 149

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV+ C      +      +    D+C+ C  C   C   AI  D
Sbjct: 60  CRHCDDAPCVKSCITGAMRKDPLTGVVTCDTDKCVGCWTCVLVCEFGAIIRD 111


>gi|254720939|ref|ZP_05182730.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A1055]
          Length = 491

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|302879333|ref|YP_003847897.1| NADH-quinone oxidoreductase, chain I [Gallionella capsiferriformans
           ES-2]
 gi|302582122|gb|ADL56133.1| NADH-quinone oxidoreductase, chain I [Gallionella capsiferriformans
           ES-2]
          Length = 162

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 60  EERCIGCKL--CEAVCPAMAIKIAVAEREDGTRRTTQYDIDLTKCIFCGFCEESCPVDAI 117


>gi|70607958|ref|YP_256828.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Sulfolobus acidocaldarius DSM 639]
 gi|68568606|gb|AAY81535.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Sulfolobus acidocaldarius DSM 639]
          Length = 336

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 18 VEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
          + VCP +   + E  +  I  D CI CG C   CP +A+
Sbjct: 1  MNVCPANAITKNEMGIVRIIEDNCIGCGFCTWACPYEAL 39



 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC---IDCG--VCEPECPVDAIKPD 58
           ++ +NCI C    C   CP +      + +      C   I  G   C   CP  A+   
Sbjct: 19  IIEDNCIGC--GFCTWACPYEALKITPSGIMSKCHLCYNRIGSGLPYCVEACPTGALTFG 76

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
                +     N  Y     +IT  +  +    K + +K
Sbjct: 77  WIEKGDA----NVNYLAP-EDITEPRFVIKKPEKAETIK 110


>gi|20093524|ref|NP_613371.1| Fe-S-cluster-containing hydrogenase component [Methanopyrus
          kandleri AV19]
 gi|19886362|gb|AAM01301.1| Fe-S-cluster-containing hydrogenase component [Methanopyrus
          kandleri AV19]
          Length = 175

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 6  TENCILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C  +   C   CP     +    L +  D C  CG C   CPV  I    +
Sbjct: 40 PQKCIHCDPERAMCARACPHHAIVQVCETLVVDRDRCNGCGKCAEACPVGGIFIRED 96


>gi|120553869|ref|YP_958220.1| electron transport complex, RnfABCDGE type, B subunit [Marinobacter
           aquaeolei VT8]
 gi|120323718|gb|ABM18033.1| electron transport complex, RnfABCDGE type, B subunit [Marinobacter
           aquaeolei VT8]
          Length = 192

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C  T C++ CPVD      ++   +   EC  C +C   CPVD I   T 
Sbjct: 109 AVIREDECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVEPCPVDCIDMITI 166

Query: 61  PGL 63
              
Sbjct: 167 EQD 169


>gi|170717801|ref|YP_001784864.1| electron transporter subunit RnfB [Haemophilus somnus 2336]
 gi|168825930|gb|ACA31301.1| electron transport complex, RnfABCDGE type, B subunit [Haemophilus
           somnus 2336]
          Length = 196

 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  E CI C  T C++ CPVD           I  D C  C +C   CP D I  
Sbjct: 106 AFINEEMCIGC--TKCIQACPVDAIIGTNKAMHTIIADLCTGCELCVAPCPTDCISM 160



 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           M  ++ + C  C+   CV  CP DC         I   
Sbjct: 135 MHTIIADLCTGCEL--CVAPCPTDCISMINVKQHIDNW 170


>gi|319897452|ref|YP_004135649.1| formate-dependent nitrite reductase, 4fe4S subunit [Haemophilus
           influenzae F3031]
 gi|317432958|emb|CBY81325.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           influenzae F3031]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPYR 140


>gi|319639534|ref|ZP_07994281.1| ferredoxin [Neisseria mucosa C102]
 gi|317399105|gb|EFV79779.1| ferredoxin [Neisseria mucosa C102]
          Length = 83

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCD--VCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E + ++ ++Y
Sbjct: 59 ILID-EEHPETYEELMAKY 76


>gi|260893278|ref|YP_003239375.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
 gi|260865419|gb|ACX52525.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
          Length = 810

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C    C +VCP       E+      P  C  CG+C   CP  AI
Sbjct: 607 VDPQKCSGC--GFCAKVCPHGVIQRREDGTYYTSPAFCQGCGLCTTACPTGAI 657



 Score = 41.5 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 20/80 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-------------CFYEGENF-----LAIHPDECIDCG 44
           +V ++ C+ C    C  +CPV+               Y+           I P+ C  CG
Sbjct: 246 FVNSQKCVEC--GRCAAICPVEVENDFDMGISRRKAAYKPHPMALPPGYTIDPNSCTRCG 303

Query: 45  VCEPECPVDAIKPDTEPGLE 64
            C   CP  AI     P   
Sbjct: 304 ACVGACPAQAIDLQAAPQER 323


>gi|261402607|ref|YP_003246831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261369600|gb|ACX72349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 161

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    C EVCP +   Y  +  + I+ ++C+ CG C+  CP +AI
Sbjct: 33 VKEDKCIGC--GKCREVCPTNAITYNNKLHIVINREKCVFCGKCKEVCPTNAI 83



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C  C    C++ CP     E  + + I  ++C  CG CE  CP++AI
Sbjct: 111 SERCASCL--VCLKNCPFHAIEEYGDKIRIDINKCELCGKCEEICPLNAI 158


>gi|282600001|ref|ZP_05972682.2| putative pyruvate formate-lyase activating enzyme [Providencia
           rustigianii DSM 4541]
 gi|282566719|gb|EFB72254.1| putative pyruvate formate-lyase activating enzyme [Providencia
           rustigianii DSM 4541]
          Length = 317

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIH-PDECIDCGVCEPECPVDA--IKPD 58
           + C+ C    CV+VCP    Y      GE    ++   +CI C  CE  C  DA  I   
Sbjct: 59  DKCVGC--GKCVDVCPAGIHYMTTNEQGEKIHRVNRSIDCIGCRKCEEVCISDALDIMGK 116

Query: 59  TEPGLELWLKINSEY 73
                E+   I  +Y
Sbjct: 117 DVTVSEMMEIIMQDY 131


>gi|189467233|ref|ZP_03016018.1| hypothetical protein BACINT_03618 [Bacteroides intestinalis DSM
           17393]
 gi|189435497|gb|EDV04482.1| hypothetical protein BACINT_03618 [Bacteroides intestinalis DSM
           17393]
          Length = 369

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C    C   CP     +G+    I  ++CI C  C   C   A   DT 
Sbjct: 297 VNAELCTHC--GVCAVHCPSGAILKGDECNTI-AEKCIKCCACVKGCSFKARTYDTP 350


>gi|126178283|ref|YP_001046248.1| glutamate synthase (NADPH) [Methanoculleus marisnigri JR1]
 gi|125861077|gb|ABN56266.1| glutamate synthase (NADPH) GltB2 subunit [Methanoculleus
          marisnigri JR1]
          Length = 505

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          +  E C+ C    CVE C    F    N + I+   C  C  C   CP DAI     P
Sbjct: 16 IDREQCMEC--GRCVENCSYGVFRWDGNRILINSRNCTACHRCLTYCPRDAIMLQEHP 71


>gi|18310047|ref|NP_561981.1| ferredoxin [Clostridium perfringens str. 13]
 gi|18144726|dbj|BAB80771.1| ferredoxin-like protein [Clostridium perfringens str. 13]
          Length = 268

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP        N   I  ++C  CG+C  +CP  AI 
Sbjct: 219 CIGCKL--CEKNCPNGAIKVENNLAIIDYEKCTSCGLCVSKCPKKAIN 264


>gi|17230004|ref|NP_486552.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|423971|pir||A47082 probable transcription regulator PatB - Anabaena sp
 gi|142067|gb|AAB59013.1| PatB [Nostoc sp. PCC 7120]
 gi|17131604|dbj|BAB74211.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 529

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECP 51
          M Y +  N C+ C +  C   CP        N   I P  C +C        C   CP
Sbjct: 1  MPYTIPNNSCVGCDN--CRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACP 56


>gi|126439611|ref|YP_001058225.1| ferredoxin [Burkholderia pseudomallei 668]
 gi|126219104|gb|ABN82610.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 668]
          Length = 290

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVVELCTGCDLCVPPCPVDCIAM 134


>gi|331683181|ref|ZP_08383782.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H299]
 gi|331079396|gb|EGI50593.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H299]
          Length = 149

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C+ +CP+    + + E  + +    CI C  C   CP      +TE
Sbjct: 62  DTCRQCKEPQCMNICPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTE 117


>gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
 gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
          Length = 299

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C   G               I+   CI CG+CE  CP  AI
Sbjct: 63  EERCVACYL--CAAACPVSCISMGGAEREDGRRWATWFRINFARCIYCGLCEEACPTLAI 120

Query: 56  K 56
           +
Sbjct: 121 Q 121


>gi|317131060|ref|YP_004090374.1| putative PAS/PAC sensor protein [Ethanoligenens harbinense
          YUAN-3]
 gi|315469039|gb|ADU25643.1| putative PAS/PAC sensor protein [Ethanoligenens harbinense
          YUAN-3]
          Length = 573

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    C+  CPV      +  + +   ECI CG C   CP +A     +
Sbjct: 12 CRGCYK--CIRACPVKSLSCLDEQVRVVDGECIYCGRCLLICPQNAKYIRDD 61


>gi|304317220|ref|YP_003852365.1| PAS/PAC sensor protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302778722|gb|ADL69281.1| putative PAS/PAC sensor protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 572

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I    CI CG C   CP +A
Sbjct: 10 NCRNCYK--CIRYCPVKAIKVNNEQAEIVDYMCIACGRCLNVCPQNA 54


>gi|225405345|ref|ZP_03760534.1| hypothetical protein CLOSTASPAR_04565 [Clostridium asparagiforme
          DSM 15981]
 gi|225043140|gb|EEG53386.1| hypothetical protein CLOSTASPAR_04565 [Clostridium asparagiforme
          DSM 15981]
          Length = 142

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +VV   C  C+   C++VCP            + +   +C  C +C   CP   I  D E
Sbjct: 29 FVVPMTCFHCEEAWCLKVCPAHAISRDPETNAVILDQTKCAGCKMCILSCPYGNIHFDHE 88


>gi|218885987|ref|YP_002435308.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756941|gb|ACL07840.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 267

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +E C  C    C  +CP       E+   +HP+ C+ CG+C   CP  A+    E
Sbjct: 99  SEACTRC--GLCERLCPDHAMTVEEDGPRLHPENCLSCGLCIKRCPEKALPVARE 151


>gi|254173419|ref|ZP_04880092.1| ketoisovalerate oxidoreductase subunit VorD [Thermococcus sp. AM4]
 gi|214032828|gb|EEB73657.1| ketoisovalerate oxidoreductase subunit VorD [Thermococcus sp. AM4]
          Length = 105

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + C+ C    C + CP    Y  E+    I  D C  CG+C  ECP +AI  + E
Sbjct: 46  PVVDDDKCVKCY--ICWKFCPEPAIYIREDGYIGIDYDYCKGCGICANECPTNAITMEKE 103

Query: 61  PG 62
             
Sbjct: 104 EK 105


>gi|145298803|ref|YP_001141644.1| electron transport protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851575|gb|ABO89896.1| electron transport protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 229

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP +     +  + +    CI C  C   CP  A+
Sbjct: 75  CRQCEDKPCAVACPNNAIVSEDGCVKVLQARCIGCKSCVVACPYGAM 121


>gi|94265838|ref|ZP_01289569.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93453613|gb|EAT04006.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 150

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C    CV VCP     +  + +  +  ++C  C  C   CP +
Sbjct: 58  SCYHCDDPHCVPVCPTGAMLKRADGIVYVDQEKCTGCVACVGACPWN 104


>gi|294636318|ref|ZP_06714715.1| sulfite reductase, subunit C [Edwardsiella tarda ATCC 23685]
 gi|291090401|gb|EFE22962.1| sulfite reductase, subunit C [Edwardsiella tarda ATCC 23685]
          Length = 335

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E CI C    CV  C    VDC        +     CI CG C   CP  A
Sbjct: 177 PERCIGC--GACVRACKHHAVDCLSLHNGKASKQESLCIGCGECVLACPTLA 226



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C + DC +    D    G   +   P+ CI CG C   C   A+  
Sbjct: 152 GCPN-DCAKATMADLGVLGIARIKFTPERCIGCGACVRACKHHAVDC 197


>gi|268324256|emb|CBH37844.1| iron-sulfur cluster-binding protein [uncultured archaeon]
          Length = 678

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++   C++C    C  +CP     + +N +      CI CG+CE  CP +AI  +     
Sbjct: 536 IIGPKCLICN--ACETLCPTKALTKDKNKINFVYGRCIACGLCEQACPEEAITLERTLDF 593

Query: 64  ELWLK 68
              ++
Sbjct: 594 SRLIE 598


>gi|228920852|ref|ZP_04084191.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838783|gb|EEM84085.1| Respiratory nitrate reductase beta subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 483

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 174 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 232


>gi|226947232|ref|YP_002802323.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841217|gb|ACO83883.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 387

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP   +        G+     +  +CI C  C+  CP  AI
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVINMIKKGGKKIPVWNMKKCIRCFCCQELCPKGAI 371


>gi|224539006|ref|ZP_03679545.1| hypothetical protein BACCELL_03903 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519390|gb|EEF88495.1| hypothetical protein BACCELL_03903 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 501

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + T  C  C    C   C   C     +   I    C+ C  C  +C   AI+ +  
Sbjct: 217 PVIDTSKCNGC--GLCARNCKAACIDSKNHK--IDYSRCVACMDCIGKCKKGAIRYERP 271



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 5/44 (11%)

Query: 17  CVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  +CPV                I   +C  CG+C   C    I
Sbjct: 196 CNTICPVGTVLGFFSRFSLLKPVIDTSKCNGCGLCARNCKAACI 239



 Score = 33.4 bits (75), Expect = 10.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 14/67 (20%)

Query: 10  ILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPEC---PVDAIKP 57
           + C   +C   CPV                    ++ + CI CG CE  C   P  AI  
Sbjct: 435 VNC--GNCARHCPVAAIEMVPSEVDNPDSPKIPVVNVERCIGCGACENLCPARPFSAIYV 492

Query: 58  DTEPGLE 64
           +      
Sbjct: 493 EGHERHR 499


>gi|254428016|ref|ZP_05041723.1| cytochrome c oxidase accessory protein CcoG [Alcanivorax sp. DG881]
 gi|196194185|gb|EDX89144.1| cytochrome c oxidase accessory protein CcoG [Alcanivorax sp. DG881]
          Length = 470

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C  C   C          PGL  +  
Sbjct: 269 CIDC--GMCVQVCPTGIDIRDGLQY-----ECITCAACVDACDDVMDHIGKPPGLIRYTT 321

Query: 69  INS 71
            N+
Sbjct: 322 ENA 324


>gi|145632430|ref|ZP_01788165.1| uridylate kinase [Haemophilus influenzae 3655]
 gi|148828228|ref|YP_001292981.1| uridylate kinase [Haemophilus influenzae PittGG]
 gi|144987337|gb|EDJ93867.1| uridylate kinase [Haemophilus influenzae 3655]
 gi|148719470|gb|ABR00598.1| uridylate kinase [Haemophilus influenzae PittGG]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPYR 140


>gi|220929708|ref|YP_002506617.1| PAS/PAC sensor protein [Clostridium cellulolyticum H10]
 gi|220000036|gb|ACL76637.1| putative PAS/PAC sensor protein [Clostridium cellulolyticum H10]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL-ELW 66
          NC  C    C+  CPV+      +   I  DEC+ CG C   CP +A   +++    + +
Sbjct: 10 NCKNCYK--CIRSCPVNAIAFKNDQAEIIHDECMLCGNCLTVCPQNAKSVNSDVQKVKKF 67

Query: 67 LKINSE 72
          ++   +
Sbjct: 68 IQKREK 73


>gi|323693500|ref|ZP_08107707.1| hypothetical protein HMPREF9475_02570 [Clostridium symbiosum
          WAL-14673]
 gi|323502457|gb|EGB18312.1| hypothetical protein HMPREF9475_02570 [Clostridium symbiosum
          WAL-14673]
          Length = 571

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    CV  C V      +    I P+ CI CG C   CP  A K  +E
Sbjct: 11 CKHCYK--CVRDCEVKSIMIRDGHAYIMPNRCILCGQCLISCPQSAKKMSSE 60


>gi|322832829|ref|YP_004212856.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp.
           Y9602]
 gi|321168030|gb|ADW73729.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp.
           Y9602]
          Length = 188

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 109 AYIDESNCIGC--TKCIQACPVDAIVGATRAVHTVITDLCTGCDLCVAPCPTDCIEM 163


>gi|320353511|ref|YP_004194850.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122013|gb|ADW17559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 148

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C  VCP        +  + +    C  CG C P CPVDAI  D E
Sbjct: 54  CLACTSPPCANVCPTGALVPRKDGGVVVKKKLCNRCGACAPACPVDAIFLDPE 106



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C   CPVD  +         P  C+ CG+C P CP D +
Sbjct: 86  CNRC--GACAPACPVDAIFLDPEG---EPFLCVHCGLCVPFCPHDCL 127


>gi|305663975|ref|YP_003860263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
          aggregans DSM 17230]
 gi|304378544|gb|ADM28383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
          aggregans DSM 17230]
          Length = 75

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
          YV  E CI C    C  VCP   F   +   + I+ D+C+ C  C   CP +AI
Sbjct: 6  YVDQEKCIGC--AQCYAVCPNKVFVIRDKKSIPINADKCVGCRACIVRCPTNAI 57


>gi|254779811|ref|YP_003057917.1| NADH dehydrogenase subunit I [Helicobacter pylori B38]
 gi|254001723|emb|CAX29954.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Helicobacter pylori
           B38]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|222444427|ref|ZP_03606942.1| hypothetical protein METSMIALI_00038 [Methanobrevibacter smithii
           DSM 2375]
 gi|261351023|ref|ZP_05976440.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|222433992|gb|EEE41157.1| hypothetical protein METSMIALI_00038 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860363|gb|EFC92661.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 456

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C   +C+  CP           + I  ++C+ CG C  +C   AI+   +     
Sbjct: 324 KCIAC--GECLNSCPTGAISLDAPKPIVIDENKCVYCGRCVGDCQFGAIRAYDDYFHSK 380



 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C  C    CV+ CP D      + +  + + CI C  CE  CPV AI
Sbjct: 403 SEKCQSC--GICVKNCPTDALILEGDKVTFNEENCIYCRQCEAICPVTAI 450



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT---EPGL 63
            C  C    C+E CP++  Y   N         C  C +C   CP DAI  D    EP  
Sbjct: 28  KCANCTDKPCLESCPIEAIYVDPNDGFTKIKSTCFGCVLCRNACPYDAIHMDVDIAEPIK 87

Query: 64  ELWLKINSEYATQW 77
           E    IN++     
Sbjct: 88  ENVPNINTKLCKSC 101



 Score = 37.3 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + T+ C  C    CV+ C            GE +  I+PD C+ CG C   CP DAIK 
Sbjct: 93  INTKLCKSC--GACVQACKTGSIKIHAVDTGEAYSVINPDTCVRCGYCFRVCPTDAIKY 149



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + CI C    C  VCP        +      I+P  C  C  C   CP  AIK 
Sbjct: 165 VNQDVCIGC--MTCTRVCPAAGAINVSKTNKLPYINPGYCARCEECMHSCPSTAIKY 219



 Score = 33.8 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPECPVDA 54
           +  + C+ C +  C  VCP D            +G   + ++ D CI C  C   CP   
Sbjct: 127 INPDTCVRCGY--CFRVCPTDAIKYGQLLPKTVKGGKVIIVNQDVCIGCMTCTRVCPAAG 184

Query: 55  IKPDTEPGLELWL 67
               ++     ++
Sbjct: 185 AINVSKTNKLPYI 197


>gi|167623860|ref|YP_001674154.1| electron transport complex protein RnfB [Shewanella halifaxensis
           HAW-EB4]
 gi|167353882|gb|ABZ76495.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I  
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDM 161


>gi|150402527|ref|YP_001329821.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033557|gb|ABR65670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 132

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           M     E CI C    CV  CPV       E  + +  +ECI C  C   CPV+AI
Sbjct: 74  MIQKDDEKCIDC--GACVVHCPVGALSVDNEFKILLDEEECIGCKNCAKICPVNAI 127


>gi|158319513|ref|YP_001512020.1| nitrite and sulphite reductase 4Fe-4S region [Alkaliphilus
           oremlandii OhILAs]
 gi|158139712|gb|ABW18024.1| nitrite and sulphite reductase 4Fe-4S region [Alkaliphilus
           oremlandii OhILAs]
          Length = 284

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+ CK   CV  CP D     E+   I  + CI CG C   CP  AI
Sbjct: 156 RCVGCK--QCVRSCP-DRMITAEDEPKIDMEGCIHCGRCIQACPTGAI 200


>gi|49082640|gb|AAT50720.1| PA3490 [synthetic construct]
          Length = 189

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI-KPDT 59
            Y+    CI C  T C++ CPVD           +  DEC  C +C   CPVD I   + 
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMREI 163

Query: 60  EPGLELW 66
              +  W
Sbjct: 164 PDDVRHW 170


>gi|46579100|ref|YP_009908.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46448513|gb|AAS95167.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
          Hildenborough]
          Length = 162

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C+ C    C + CP   + + +   + +    CI CG C   CPVDA+  D E
Sbjct: 46 CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGE 98



 Score = 40.7 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C    C E CPVD  +         P  CI CG C   CP + I+   +P  
Sbjct: 73  VDRSLCIRC--GRCAEACPVDAVHMDGETGL--PYVCIHCGRCVAFCPHECIELVDQPVA 128

Query: 64  EL 65
           + 
Sbjct: 129 DA 130


>gi|89073353|ref|ZP_01159877.1| electron transport complex protein RnfB [Photobacterium sp. SKA34]
 gi|89050840|gb|EAR56314.1| electron transport complex protein RnfB [Photobacterium sp. SKA34]
          Length = 194

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|88812968|ref|ZP_01128211.1| NADH dehydrogenase subunit I [Nitrococcus mobilis Nb-231]
 gi|88789746|gb|EAR20870.1| NADH dehydrogenase subunit I [Nitrococcus mobilis Nb-231]
          Length = 162

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 35/104 (33%), Gaps = 20/104 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIEAEPRADGTRRTTRYDIDLFKCIYCGFCEESCPVDSI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                   E   +   E      NI  K+E L    + +    K
Sbjct: 118 V--ETRIYEYHFERRGE------NIIHKQELLALGDQYEQQLAK 153


>gi|94984496|ref|YP_603860.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
           DSM 11300]
 gi|94554777|gb|ABF44691.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
           geothermalis DSM 11300]
          Length = 334

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V + CI C    C  VCP          EG   L ++   C  C  C   CP  AI    
Sbjct: 257 VDDTCIDC--PVCANVCPTQAITREQKPEGGVQLLLNLSACTGCRACLRSCPPQAIHMQE 314

Query: 60  E 60
           E
Sbjct: 315 E 315



 Score = 38.0 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 11 LCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C    C   CP +    G    +I   P  C  CG+C   CP  A++ D
Sbjct: 33 GCD--ACHATCPHEAIAFGPLGQSIQLDPQRCTGCGLCVQVCPSGALEYD 80


>gi|125973687|ref|YP_001037597.1| hypothetical protein Cthe_1172 [Clostridium thermocellum ATCC
           27405]
 gi|256005771|ref|ZP_05430724.1| protein of unknown function DUF362 [Clostridium thermocellum DSM
           2360]
 gi|281417844|ref|ZP_06248864.1| protein of unknown function DUF362 [Clostridium thermocellum JW20]
 gi|125713912|gb|ABN52404.1| protein of unknown function DUF362 [Clostridium thermocellum ATCC
           27405]
 gi|255990271|gb|EEU00400.1| protein of unknown function DUF362 [Clostridium thermocellum DSM
           2360]
 gi|281409246|gb|EFB39504.1| protein of unknown function DUF362 [Clostridium thermocellum JW20]
 gi|316940117|gb|ADU74151.1| iron-sulfur cluster-binding protein [Clostridium thermocellum DSM
           1313]
          Length = 382

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC----FYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
            Y++   CI C    CV  CPV      ++ G            CI C  C+  CP  AI
Sbjct: 310 PYILKNKCIKC--GVCVNACPVKPKAVDWHNGNKKEPPTYIYKRCIRCYCCQELCPESAI 367

Query: 56  KPDTEPGLELWL 67
                   + + 
Sbjct: 368 HLKVPFIRKFFY 379


>gi|323705129|ref|ZP_08116705.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535555|gb|EGB25330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 147

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV+ C      +      +    D+C+ C  C   C   AI  DT
Sbjct: 60  CRHCDDAPCVKACITGAMQKDPVTGVVTCDTDKCVGCWTCVLVCGFGAIVRDT 112


>gi|311107540|ref|YP_003980393.1| cytochrome C oxidase accessory protein CcoG [Achromobacter
           xylosoxidans A8]
 gi|310762229|gb|ADP17678.1| cytochrome c oxidase accessory protein CcoG [Achromobacter
           xylosoxidans A8]
          Length = 496

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                 CI CG C   C     K   EPGL  +  
Sbjct: 285 CVDCSL--CVQVCPTGIDIRDGLQY-----MCIGCGACIDACEQVMDKMQYEPGLIRYTS 337

Query: 69  INSEY 73
             +  
Sbjct: 338 ERAML 342


>gi|310828219|ref|YP_003960576.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
 gi|308739953|gb|ADO37613.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
          Length = 262

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+E+C  C   +CV VCPV      +      PD CI C  C   CPV+A K    P L 
Sbjct: 182 VSEDCTQC--GECVSVCPVAAINPDDPTET-DPDLCIRCCACVRICPVEARKFTAPPFLA 238

Query: 65  --LWLKIN 70
              +L+ N
Sbjct: 239 TVQFLEGN 246


>gi|260773217|ref|ZP_05882133.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP
           69.14]
 gi|260612356|gb|EEX37559.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP
           69.14]
          Length = 195

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPL 164

Query: 58  DTEPGLELW 66
           +T P    W
Sbjct: 165 ETTPETWKW 173


>gi|239905934|ref|YP_002952673.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
 gi|239795798|dbj|BAH74787.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
          Length = 421

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
          V    CI C    C+  CP    Y         P    CI+CG C   CPV AI  +
Sbjct: 30 VDESKCIGCD--SCMGYCPTGAIYGETGEPHKIPHVEACINCGQCLTHCPVSAIYEE 84


>gi|222446049|ref|ZP_03608564.1| hypothetical protein METSMIALI_01698 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435614|gb|EEE42779.1| hypothetical protein METSMIALI_01698 [Methanobrevibacter smithii
           DSM 2375]
          Length = 632

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  NC  C        CP     +    +AI    C  CGVC   C   A+
Sbjct: 578 IDSNCNGCNKCVSELACP--AISKDGGKIAIDQSMCDGCGVCIQVCKYGAL 626


>gi|165975559|ref|YP_001651152.1| nitrate reductase, Fe-S protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875660|gb|ABY68708.1| nitrate reductase, Fe-S protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 225

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       +      C+ C  C   CP        E
Sbjct: 93  QSCQHCTNAPCVAVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPE 148


>gi|153813397|ref|ZP_01966065.1| hypothetical protein RUMOBE_03817 [Ruminococcus obeum ATCC 29174]
 gi|149830489|gb|EDM85580.1| hypothetical protein RUMOBE_03817 [Ruminococcus obeum ATCC 29174]
          Length = 62

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          TY +  +CI C    CV+VCP  C    +    I  ++C  CG C   CP  AI
Sbjct: 6  TYYINTDCINC--GLCVKVCPEHCIDVYKKPAFIDQNKCRHCGACAEVCPPGAI 57


>gi|45358388|ref|NP_987945.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2]
 gi|44921146|emb|CAF30381.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2]
          Length = 654

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           Y+  E C  C    C EVCP+    E +                      I  + CIDCG
Sbjct: 240 YLSEEKCTGC--GSCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTIDKESCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPG 62
           +C   C   AI    +P 
Sbjct: 298 LCAKVCGPQAIDYGQKPE 315


>gi|120599991|ref|YP_964565.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560084|gb|ABM26011.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 487

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C    +K D +  L  ++ 
Sbjct: 287 CVDC--HLCVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKQNLIGYMS 339

Query: 69  IN 70
            N
Sbjct: 340 EN 341


>gi|114319976|ref|YP_741659.1| electron transport complex, RnfABCDGE type, B subunit
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|123127335|sp|Q0AAG8|RNFB_ALHEH RecName: Full=Electron transport complex protein rnfB
 gi|114226370|gb|ABI56169.1| electron transport complex, RnfABCDGE type, B subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 186

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            +V    CI C  T C++ CPVD      +    +   EC  CG+C   CPVD I     
Sbjct: 107 AWVDEAVCIGC--TRCIQACPVDAILGAAKQMHTVLKGECTGCGLCVDPCPVDCIHMVPV 164

Query: 58  DTEPGLELW 66
           D +     W
Sbjct: 165 DLDLAEWHW 173


>gi|332994475|gb|AEF04530.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Alteromonas sp.
           SN2]
          Length = 477

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     K D   GL  +  
Sbjct: 276 CIDCNL--CVQVCPTGIDIRNGLQY-----ECINCGACVDACNGVMDKMDYPKGLISFTS 328

Query: 69  INSEYATQWPNITTKK 84
              E A    +I   K
Sbjct: 329 -EEELAGGKTHIVRPK 343


>gi|288926318|ref|ZP_06420242.1| ferredoxin [Prevotella buccae D17]
 gi|288336923|gb|EFC75285.1| ferredoxin [Prevotella buccae D17]
          Length = 276

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKP 57
           V  E CI C    C EVCP +    G        H   CI C  C   CP  AI  
Sbjct: 205 VDRERCIQC--GICAEVCPTENVIGGRKRYPQWKHDGSCITCFACYHHCPQRAIDY 258


>gi|223982539|ref|ZP_03632776.1| hypothetical protein HOLDEFILI_00050 [Holdemania filiformis DSM
           12042]
 gi|223965483|gb|EEF69758.1| hypothetical protein HOLDEFILI_00050 [Holdemania filiformis DSM
           12042]
          Length = 295

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ENCI C    C   C           L I   +CI+C  C   C  +A   DT      +
Sbjct: 226 ENCIQC--GACAANCSTGA--IDPQTLEIDETKCINCMRCSFVCEYNARSYDT-AVKRDF 280

Query: 67  LK 68
           ++
Sbjct: 281 IE 282


>gi|223038427|ref|ZP_03608721.1| 4Fe-4S binding domain protein [Campylobacter rectus RM3267]
 gi|222880284|gb|EEF15371.1| 4Fe-4S binding domain protein [Campylobacter rectus RM3267]
          Length = 228

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   CV VCP    ++ E      ++ D+CI C  C   CP D    + E     
Sbjct: 98  SCQQCQDAPCVSVCPTKACHKDEKTGITTMNTDDCIACKYCIVACPYDVRFINHETRAAE 157


>gi|215445027|ref|ZP_03431779.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T85]
          Length = 159

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEYA 74
          C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ Y 
Sbjct: 3  CIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINASYY 62

Query: 75 TQWP-----NITTKKESLPSAAKMD 94
           + P       T+K   +  AA++ 
Sbjct: 63 PKRPAGVKLAPTSKLAPVTPAAEVR 87



 Score = 33.8 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC 25
          M Y+    C+ C    CV  CPV  
Sbjct: 18 MLYIDPVACVDC--GACVTACPVSA 40


>gi|148642370|ref|YP_001272883.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551387|gb|ABQ86515.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
          Length = 453

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C   +C+  CP           + I  ++C+ CG C  +C   AI+   +     
Sbjct: 321 KCIAC--GECLNSCPTGAISLDAPKPIVIDENKCVYCGRCVGDCQFGAIRAYDDYFHSK 377



 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C  C    CV+ CP D      + +  + + CI C  CE  CPV AI
Sbjct: 400 SEKCQSC--GICVKNCPTDALILEGDKVTFNEENCIYCRQCEAICPVTAI 447



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT---EPGL 63
           C  C    C+E CP++  Y   N         C  C +C   CP DAI  D    EP  
Sbjct: 25 KCANCTDKPCLESCPIEAIYVDPNDGFTKIKSTCFGCVLCRNACPYDAIHMDVDIAEPIK 84

Query: 64 ELWLKINSEYATQW 77
          E    IN++     
Sbjct: 85 ENVPNINTKLCKSC 98



 Score = 37.3 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + T+ C  C    CV+ C            GE +  I+PD C+ CG C   CP DAIK 
Sbjct: 90  INTKLCKSC--GACVQACKTGSIKIHAVDTGEAYSVINPDTCVRCGYCFRVCPTDAIKY 146



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + CI C    C  VCP        +      I+P  C  C  C   CP  AIK 
Sbjct: 162 VNQDVCIGC--MTCTRVCPAAGAINVSKTNKLPYINPGYCARCEECMHSCPSTAIKY 216



 Score = 33.8 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPECPVDA 54
           +  + C+ C +  C  VCP D            +G   + ++ D CI C  C   CP   
Sbjct: 124 INPDTCVRCGY--CFRVCPTDAIKYGQLLPKTVKGGKVIIVNQDVCIGCMTCTRVCPAAG 181

Query: 55  IKPDTEPGLELWL 67
               ++     ++
Sbjct: 182 AINVSKTNKLPYI 194


>gi|254251376|ref|ZP_04944694.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa
          AUO158]
 gi|124893985|gb|EAY67865.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa
          AUO158]
          Length = 88

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHDESHAQLMEKY 76


>gi|304317042|ref|YP_003852187.1| nitrite and sulphite reductase 4Fe-4S region [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778544|gb|ADL69103.1| nitrite and sulphite reductase 4Fe-4S region [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 290

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C    C +VC V      +N      D+CI CG C   CP+DA
Sbjct: 165 EDLCTGC--GLCADVCDVKAITIKDNLARRDDDKCIYCGSCIRVCPMDA 211


>gi|291287252|ref|YP_003504068.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884412|gb|ADD68112.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 578

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++  + C  C  T C  + CP   +   +    I    C  C +C   C   AI
Sbjct: 522 FIHEDKCSGC--TICTRLGCPAILWDAEKRVAHIDETLCTGCHLCIKVCKFGAI 573


>gi|167835372|ref|ZP_02462255.1| ferredoxin [Burkholderia thailandensis MSMB43]
          Length = 87

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I PD+C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPDKCTECVGHFDGPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ ++Y
Sbjct: 59 IPRD-PDRPETKDQLMAKY 76


>gi|241518640|ref|YP_002979268.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863053|gb|ACS60717.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 942

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C+ C+   C   CPV+   +  +       + CI    C   CP    + +    
Sbjct: 770 PCMHCEQAPCEMGCPVNAAVHSTDGLNLQVYNRCIGTRTCSSFCPYKVRRFNWFDF 825


>gi|148642452|ref|YP_001272965.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanobrevibacter smithii ATCC 35061]
 gi|261349413|ref|ZP_05974830.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanobrevibacter smithii DSM 2374]
 gi|148551469|gb|ABQ86597.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanobrevibacter smithii ATCC 35061]
 gi|288861775|gb|EFC94073.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanobrevibacter smithii DSM 2374]
          Length = 632

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  NC  C        CP     +    +AI    C  CGVC   C   A+
Sbjct: 578 IDSNCNGCNKCVSELACP--AISKDGGKIAIDQSMCDGCGVCIQVCKYGAL 626


>gi|147677399|ref|YP_001211614.1| oxidoreductase [Pelotomaculum thermopropionicum SI]
 gi|146273496|dbj|BAF59245.1| predicted oxidoreductases [Pelotomaculum thermopropionicum SI]
          Length = 315

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E C  C    C E C             +    C  C  C   CP   I
Sbjct: 264 IEEWCRGC--GRCAERCRSGALSVRNGRATVDRRLCTLCCYCGAACPDFCI 312


>gi|11497773|ref|NP_068995.1| ferredoxin (fdx-1) [Archaeoglobus fulgidus DSM 4304]
 gi|2650486|gb|AAB91072.1| ferredoxin (fdx-1) [Archaeoglobus fulgidus DSM 4304]
          Length = 95

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
          +  E CI C    CV  CP          + +     C   G C   CP  A+  +   
Sbjct: 8  IDEEKCIGC--GRCVNSCPTGALVLNNEKVKLKDERLCDGYGSCIAVCPSGALYIEVRE 64


>gi|15601890|ref|NP_244962.1| NrfC [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720226|gb|AAK02109.1| NrfC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 226

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           +C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 94  SCQHCHNAPCVHVCPTGASFVDKETGIVDVHKDLCVGCQYCIAVCPYR 141


>gi|32035313|ref|ZP_00135316.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207590|ref|YP_001052815.1| nitrate reductase [Actinobacillus pleuropneumoniae L20]
 gi|190149370|ref|YP_001967895.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303250236|ref|ZP_07336437.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303251925|ref|ZP_07338096.1| nitrate reductase, Fe-S protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126096382|gb|ABN73210.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|189914501|gb|ACE60753.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302649355|gb|EFL79540.1| nitrate reductase, Fe-S protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650947|gb|EFL81102.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 225

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       +      C+ C  C   CP        E
Sbjct: 93  QSCQHCTNAPCVAVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPE 148


>gi|325972031|ref|YP_004248222.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324027269|gb|ADY14028.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 261

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VT+ CI C    C  +CP       +         C  C  C   CP  AI
Sbjct: 188 FEVTDACISC--GLCYRMCPSFNIEMVDGKPEFD-RACTGCLGCYHRCPTQAI 237


>gi|323483909|ref|ZP_08089284.1| sigma-54 dependent transcriptional regulator [Clostridium
          symbiosum WAL-14163]
 gi|323402747|gb|EGA95070.1| sigma-54 dependent transcriptional regulator [Clostridium
          symbiosum WAL-14163]
          Length = 571

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    CV  C V      +    I P+ CI CG C   CP  A K  +E
Sbjct: 11 CKHCYK--CVRDCEVKSIMIRDGHAYIMPNRCILCGQCLISCPQSAKKMSSE 60


>gi|260893584|ref|YP_003239681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260865725|gb|ACX52831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 135

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C  C    C E CP            I   ++C  CG C   C +  I  D E   
Sbjct: 53  DVCRACPDAPCAEACPTGALTPRAGGGVIWRRNKCSRCGNCANACVLRVIHFDEEGYP 110


>gi|261211946|ref|ZP_05926232.1| electron transport complex protein RnfB [Vibrio sp. RC341]
 gi|260838554|gb|EEX65205.1| electron transport complex protein RnfB [Vibrio sp. RC341]
          Length = 195

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G      +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|226487090|emb|CAX75410.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
          Length = 137

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 35  EERCIACKL--CEAICPAQAITIEAEPRAGGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 92

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMD 94
                         N EY+TQ     +  K++ L +  + +
Sbjct: 93  VEGP----------NFEYSTQTHEELLYNKEKLLQNGDRWE 123


>gi|218885366|ref|YP_002434687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756320|gb|ACL07219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 147

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             ++C+ C    C  +CP            +    D C  CG+C   CPV A+  + E
Sbjct: 88  DEDSCMHC--GMCTAICPTSALAMDIEARVVVFDKDRCTACGLCTRVCPVGAMNVEVE 143


>gi|212635176|ref|YP_002311701.1| electron transport complex protein RnfB [Shewanella piezotolerans
           WP3]
 gi|226735433|sp|B8CM57|RNFB_SHEPW RecName: Full=Electron transport complex protein rnfB
 gi|212556660|gb|ACJ29114.1| Electron transport complex, RnfABCDGE type, B subunit [Shewanella
           piezotolerans WP3]
          Length = 189

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I     
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDMLPI 164

Query: 61  PGLEL 65
                
Sbjct: 165 EQTTK 169


>gi|134045695|ref|YP_001097181.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcus
           maripaludis C5]
 gi|132663320|gb|ABO34966.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcus
           maripaludis C5]
          Length = 654

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           Y+  E C  C    C EVCP+    E +                      I  + CIDCG
Sbjct: 240 YLSEEKCTGC--GSCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTIDKESCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPG 62
           +C   C   AI    +P 
Sbjct: 298 LCAKVCGPQAIDYGQKPE 315


>gi|146292075|ref|YP_001182499.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563765|gb|ABP74700.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 487

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C    +K D +  L  ++ 
Sbjct: 287 CVDC--HLCVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKQNLIGYMS 339

Query: 69  IN 70
            N
Sbjct: 340 EN 341


>gi|150391759|ref|YP_001321808.1| putative PAS/PAC sensor protein [Alkaliphilus metalliredigens
          QYMF]
 gi|149951621|gb|ABR50149.1| putative PAS/PAC sensor protein [Alkaliphilus metalliredigens
          QYMF]
          Length = 569

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E C  C    C+ VC        ++   I  D CI CG C   C  +A+    +     
Sbjct: 8  KEKCKNCYK--CIRVCSPKAISIYDDRAEILEDRCISCGECYVICDQNALYIKDKVHEVK 65

Query: 66 W-LKINSE 72
            +  N +
Sbjct: 66 RAIDSNKK 73


>gi|282162750|ref|YP_003355135.1| hypothetical protein MCP_0080 [Methanocella paludicola SANAE]
 gi|282155064|dbj|BAI60152.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 461

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++CI C    C   CP     +   F       CI C  CE  CP +AI
Sbjct: 219 VNDSCIKC--MKCRRACPAGAISKENGF---DTTACIKCLKCERACPENAI 264


>gi|225181697|ref|ZP_03735136.1| protein of unknown function DUF362 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167568|gb|EEG76380.1| protein of unknown function DUF362 [Dethiobacter alkaliphilus AHT
           1]
          Length = 370

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI CK   C   CP       E    I    CI C  C+  CP  AI
Sbjct: 313 DSCISCK--ICQHACPAGAITMEEA-AQIEEGACIRCYCCQEMCPEGAI 358


>gi|210135427|ref|YP_002301866.1| NADH dehydrogenase subunit I [Helicobacter pylori P12]
 gi|226737394|sp|B6JNA8|NUOI_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|210133395|gb|ACJ08386.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori P12]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|208435162|ref|YP_002266828.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori G27]
 gi|226737395|sp|B5Z8R3|NUOI_HELPG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|208433091|gb|ACI27962.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori G27]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|197285164|ref|YP_002151036.1| electron transport complex protein [Proteus mirabilis HI4320]
 gi|227355594|ref|ZP_03839989.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906]
 gi|194682651|emb|CAR42772.1| electron transport complex protein [Proteus mirabilis HI4320]
 gi|227164390|gb|EEI49279.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906]
          Length = 208

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
             +  +NCI C  T C++ CPVD           I  D C  C +C P CP D I
Sbjct: 110 ALIDEDNCIGC--TKCIQACPVDAIVGATRAMHTIIEDLCTGCDLCVPPCPTDCI 162


>gi|218779916|ref|YP_002431234.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761300|gb|ACL03766.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 289

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T++CI C   +CVEVC ++     +    I  D C  CG C   C   AI
Sbjct: 219 ITDDCIAC--GECVEVCYLNALEIVDGK-VIRKDICRMCGRCAAACKQHAI 266


>gi|302339228|ref|YP_003804434.1| dihydroorotate dehydrogenase [Spirochaeta smaragdinae DSM 11293]
 gi|301636413|gb|ADK81840.1| dihydroorotate dehydrogenase family protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 362

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C  C    CV VCP +        + +    C  CG+C   CP  A+
Sbjct: 308 PDICTEC--GRCVTVCPYEARSMVGRQMNLDRSMCRYCGLCVTACPTGAL 355


>gi|284049225|ref|YP_003399564.1| sulfite reductase, subunit C [Acidaminococcus fermentans DSM 20731]
 gi|283953446|gb|ADB48249.1| sulfite reductase, subunit C [Acidaminococcus fermentans DSM 20731]
          Length = 325

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
                CI C    CV+ C    V+  +  +     + ++CI CGVC   CP  A
Sbjct: 168 FDPSRCISC--GACVKKCKQLSVEALHMDKFRPVRNVEKCIGCGVCAHACPNRA 219


>gi|212711766|ref|ZP_03319894.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM
           30120]
 gi|212685288|gb|EEB44816.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM
           30120]
          Length = 200

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           +  ENCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 112 IDEENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIEM 164


>gi|170756030|ref|YP_001779637.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
 gi|169121242|gb|ACA45078.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
          Length = 387

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP   +        G+     +  +CI C  C+  CP  AI
Sbjct: 317 IKEKCIGCN--RCAEVCPEKPYVINMIEKGGKKIPVWNMKKCIRCFCCQELCPKGAI 371


>gi|218780264|ref|YP_002431582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761648|gb|ACL04114.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 436

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C+ C    C + CP++                  I  + C+ CGVC   C   A+
Sbjct: 289 VDDDACMGC--GKCADACPINAISLAPVKGQGKKKKKPIIDEEICLGCGVCALSCKPGAL 346

Query: 56  KPD 58
           K +
Sbjct: 347 KLE 349


>gi|218780367|ref|YP_002431685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761751|gb|ACL04217.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 172

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+   C+  CP       E +  + +    C+ C  C   CP  A +         
Sbjct: 58  PCYHCEKPWCIPACPTGAMQRRESDGIVYVDESLCVGCKACISACPWGAPQWYKAARKGK 117

Query: 66  WLK 68
            +K
Sbjct: 118 VVK 120


>gi|149920708|ref|ZP_01909173.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
 gi|149818495|gb|EDM77944.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
          Length = 1178

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E C  C    C  +CPVD     G+    + PD CI C VC   CP DA++P   P 
Sbjct: 250 VDPERCDGC--GVCERLCPVDFLDGLGQPRAGLEPDACIRCQVCVEACPTDAMRPVYGPE 307


>gi|117620413|ref|YP_857010.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561820|gb|ABK38768.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 199

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP +     +  + +    CI C  C   CP  A+
Sbjct: 75  CRQCEDKPCAMACPNNAIVSEDGCVKVLQARCIGCKSCVVACPYGAM 121


>gi|34496404|ref|NP_900619.1| NADH dehydrogenase subunit I [Chromobacterium violaceum ATCC 12472]
 gi|81656630|sp|Q7NZH3|NUOI_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|34102257|gb|AAQ58623.1| NADH-ubiquinone oxidoreductase, chain I [Chromobacterium violaceum
           ATCC 12472]
          Length = 162

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                  +   I   +CI CG CE  CPVDAI
Sbjct: 60  EERCIACKL--CEAVCPAMAISIESEQREDGTRRTSRYDIDLTKCIFCGFCEEACPVDAI 117


>gi|134297002|ref|YP_001120737.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia vietnamiensis G4]
 gi|134140159|gb|ABO55902.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia vietnamiensis G4]
          Length = 88

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPDIYVIDPGKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHEESHAQLMEKY 76


>gi|307637939|gb|ADN80389.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 908]
 gi|325996543|gb|ADZ51948.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 2018]
 gi|325998132|gb|ADZ50340.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 2017]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|261839986|gb|ACX99751.1| NADH dehydrogenase I, I subunit [Helicobacter pylori 52]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|224437022|ref|ZP_03658003.1| hypothetical protein HcinC1_03570 [Helicobacter cinaedi CCUG 18818]
          Length = 221

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
            V   C+ C    C ++CP     + +N    I    C     C   CP 
Sbjct: 130 FVPRRCMHCDDPTCQKICPFGIIGKDDNNAVNIDEHYCFGGAKCRDVCPW 179


>gi|194430838|ref|ZP_03063205.1| ferredoxin [Escherichia coli B171]
 gi|194411118|gb|EDX27573.1| ferredoxin [Escherichia coli B171]
          Length = 98

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CI C   +C   CP    Y  ++   I  +P++C  C  C   C   A++   E  +
Sbjct: 37 EEKCIHC--GNCTAACPTGALYVEKDTFYIRFNPEKCTACEFCVAVCITKAMEVHVESEV 94

Query: 64 ELW 66
          E +
Sbjct: 95 ESF 97


>gi|182415695|ref|YP_001820761.1| electron-transferring-flavoprotein dehydrogenase [Opitutus terrae
           PB90-1]
 gi|177842909|gb|ACB77161.1| Electron-transferring-flavoprotein dehydrogenase [Opitutus terrae
           PB90-1]
          Length = 608

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV 52
           T+V    C  C    C++ C       G N +     ++C+ CG C   C  
Sbjct: 532 TFVDPNTCAQCGVKICIDACSGQAISAGTNGVPQFDREKCVHCGACLWNCSQ 583


>gi|170701091|ref|ZP_02892067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria IOP40-10]
 gi|170133992|gb|EDT02344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria IOP40-10]
          Length = 88

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MSLMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHDESHAQLMEKY 76


>gi|153814817|ref|ZP_01967485.1| hypothetical protein RUMTOR_01032 [Ruminococcus torques ATCC 27756]
 gi|317500336|ref|ZP_07958561.1| RnfB/polyferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089655|ref|ZP_08338554.1| hypothetical protein HMPREF1025_02137 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847848|gb|EDK24766.1| hypothetical protein RUMTOR_01032 [Ruminococcus torques ATCC 27756]
 gi|316898277|gb|EFV20323.1| RnfB/polyferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405023|gb|EGG84561.1| hypothetical protein HMPREF1025_02137 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 268

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C  +  CV+ CP D  +  +    +  + C  CG C   CP   I+       + +++ 
Sbjct: 143 GCLGYGSCVDACPFDAIHIVDGIAVVDKEACKACGKCVDACPKHLIELI-PYKQKTFVQC 201

Query: 70  N 70
           N
Sbjct: 202 N 202



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C+   C   C             I  D+C +CGVC  +CP   I    E
Sbjct: 218 CIGCRL--CERNCEAGAITVNNFLAHIDADKCTNCGVCAEKCPRKIITVRFE 267



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 18/70 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
             V  E C  C    CV+ CP              V C    +    +   +  CI C +
Sbjct: 166 AVVDKEACKAC--GKCVDACPKHLIELIPYKQKTFVQCNSNEKGKALMDVCQVGCIGCRL 223

Query: 46  CEPECPVDAI 55
           CE  C   AI
Sbjct: 224 CERNCEAGAI 233


>gi|84489422|ref|YP_447654.1| putative ATPase RIL [Methanosphaera stadtmanae DSM 3091]
 gi|84372741|gb|ABC57011.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 594

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 6  TENC--ILCKHTDCVEVCP-------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C    C +  C+E CP            E +    I  + C  CG+C   C  +AI 
Sbjct: 11 KDKCQPKKCNY-ACIEYCPGVRMEEDTIIISEDDKKPEISEELCSGCGICVNRCVFNAIN 69


>gi|15598686|ref|NP_252180.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PAO1]
 gi|107103020|ref|ZP_01366938.1| hypothetical protein PaerPA_01004089 [Pseudomonas aeruginosa PACS2]
 gi|218890265|ref|YP_002439129.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           LESB58]
 gi|254242171|ref|ZP_04935493.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192]
 gi|17369007|sp|Q9HYB9|RNFB_PSEAE RecName: Full=Electron transport complex protein rnfB
 gi|226735423|sp|B7UWJ3|RNFB_PSEA8 RecName: Full=Electron transport complex protein rnfB
 gi|9949636|gb|AAG06878.1|AE004770_3 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|126195549|gb|EAZ59612.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192]
 gi|218770488|emb|CAW26253.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 188

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI-KPDT 59
            Y+    CI C  T C++ CPVD           +  DEC  C +C   CPVD I   + 
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMREI 163

Query: 60  EPGLELW 66
              +  W
Sbjct: 164 PDDVRHW 170


>gi|302536176|ref|ZP_07288518.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C]
 gi|302445071|gb|EFL16887.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C]
          Length = 226

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 72  EKCIGCEL--CAWACPADAIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEAC 129

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 130 PTRALTM 136


>gi|253995914|ref|YP_003047978.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
 gi|253982593|gb|ACT47451.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
          Length = 477

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI CG+C   C     K +   GL  +  
Sbjct: 272 CIDCSF--CVQVCPTGIDIRNGL-----QQECISCGLCVDACNSIMDKMEYPRGLIRFST 324

Query: 69  INSEYATQW 77
            N+     W
Sbjct: 325 QNA-LTNHW 332


>gi|167463562|ref|ZP_02328651.1| nitrate reductase, beta subunit [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 489

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ +    + +  + C     C   CP   +  + +     
Sbjct: 181 CEHCINPACVSSCPSGAMYKRDEDGIVLVDQNACRAWRFCVSSCPYKKVYFNWQTNKAE 239


>gi|146303092|ref|YP_001190408.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Metallosphaera sedula DSM 5348]
 gi|145701342|gb|ABP94484.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Metallosphaera sedula DSM 5348]
          Length = 85

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          VV + CI C    C   CP            ++ + C  CGVC   CPV AI   TE
Sbjct: 30 VVGDRCIGCN--ACYLWCPEGTIGVKGKRAEVNYEYCKGCGVCANVCPVKAISMVTE 84


>gi|167039219|ref|YP_001662204.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|300915532|ref|ZP_07132843.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307723800|ref|YP_003903551.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|166853459|gb|ABY91868.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X514]
 gi|300888430|gb|EFK83581.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307580861|gb|ADN54260.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X513]
          Length = 149

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV+ C      +      +    D+C+ C  C   C   AI  D
Sbjct: 60  CRHCDDAPCVKSCITGAMRKDPLTGVVTCDTDKCVGCWTCVLVCEFGAIIRD 111


>gi|91773116|ref|YP_565808.1| thiamine pyrophosphate enzyme-like TPP-binding [Methanococcoides
           burtonii DSM 6242]
 gi|91712131|gb|ABE52058.1| Protein containing N-terminal Pyruvate flavodoxin/ferredoxin
           oxidoreductase region, C-terminal TPP-binding region and
           ferredoxin domain [Methanococcoides burtonii DSM 6242]
          Length = 601

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C+ C+   CV + CP   F +      I+   C  CG+C   C  DAI
Sbjct: 547 VDHDKCVGCRM--CVNLGCPAIEFDKENKKSTINAT-CTGCGLCAEVCKFDAI 596


>gi|319950459|ref|ZP_08024373.1| NADH dehydrogenase subunit I [Dietzia cinnamea P4]
 gi|319435882|gb|EFV91088.1| NADH dehydrogenase subunit I [Dietzia cinnamea P4]
          Length = 186

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 55  EKCIGCEL--CAWACPADAIYVEGADNTAEERFSPGERYGRIYQINYLRCIGCGLCVEAC 112

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 113 PTRALTM 119


>gi|310827039|ref|YP_003959396.1| putative polyferredoxin [Eubacterium limosum KIST612]
 gi|308738773|gb|ADO36433.1| putative polyferredoxin [Eubacterium limosum KIST612]
          Length = 252

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + VT+ CI C    C  VCP+                C  C  C   CP +AI+ 
Sbjct: 183 FRVTDACISC--GKCEAVCPLSNIRLENGRPR-WGKRCTHCMACICRCPREAIEY 234


>gi|296536625|ref|ZP_06898700.1| cytochrome c oxidase accessory protein CcoG [Roseomonas cervicalis
           ATCC 49957]
 gi|296263045|gb|EFH09595.1| cytochrome c oxidase accessory protein CcoG [Roseomonas cervicalis
           ATCC 49957]
          Length = 495

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C+   CV VCP          L     ECI CG+C   C     K +   GL  +  
Sbjct: 265 CVDCR--ACVHVCPTGIDIRDGQQL-----ECIGCGLCIDACDDVMAKLNRPTGLVAFET 317

Query: 69  I 69
           +
Sbjct: 318 L 318


>gi|269139087|ref|YP_003295788.1| anaerobic sulfite reductase subunit C [Edwardsiella tarda EIB202]
 gi|267984748|gb|ACY84577.1| anaerobic sulfite reductase subunit C [Edwardsiella tarda EIB202]
 gi|304559016|gb|ADM41680.1| Anaerobic sulfite reductase subunit C [Edwardsiella tarda FL6-60]
          Length = 335

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +   E CI C    CV  C    VDC              CI CG C   CP  A
Sbjct: 174 HFTPERCIGC--GACVRACKHHAVDCLSLLNGKATKQESLCIGCGECVLACPTLA 226



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C + DC +    D    G   +   P+ CI CG C   C   A+  
Sbjct: 152 GCPN-DCAKATMADLGILGVARIHFTPERCIGCGACVRACKHHAVDC 197


>gi|240169662|ref|ZP_04748321.1| NADH dehydrogenase subunit I [Mycobacterium kansasii ATCC 12478]
          Length = 181

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEEARYSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|153003957|ref|YP_001378282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152027530|gb|ABS25298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter sp. Fw109-5]
          Length = 100

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC------IDCGVCEPECPVDA 54
          M   +T+ CI C    C   CP     +GE+   I P+ C           C+  CPVD 
Sbjct: 1  MATKITDECINC--GACEPECPNSAITQGEDIYVIDPNLCTECVGFHGEEACQAVCPVDC 58

Query: 55 IKPDTE 60
            PD E
Sbjct: 59 CIPDEE 64


>gi|220929056|ref|YP_002505965.1| molybdopterin oxidoreductase [Clostridium cellulolyticum H10]
 gi|219999384|gb|ACL75985.1| molybdopterin oxidoreductase [Clostridium cellulolyticum H10]
          Length = 1087

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C E C  +  +Y  E  +    ++C  C  C   C   AI+   E
Sbjct: 62  CNHCEKPTCTEYCSSNALYYTDEGIITYDAEDCNHCLSCMEACVTGAIRYQKE 114


>gi|157370480|ref|YP_001478469.1| electron transport complex protein RnfB [Serratia proteamaculans
           568]
 gi|166991045|sp|A8GE01|RNFB_SERP5 RecName: Full=Electron transport complex protein rnfB
 gi|157322244|gb|ABV41341.1| electron transport complex, RnfABCDGE type, B subunit [Serratia
           proteamaculans 568]
          Length = 190

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 108 AYIDEANCIGC--TKCIQACPVDAIVGATRAMHTVITDLCTGCDLCVAPCPTDCIEM 162


>gi|219850233|ref|YP_002464666.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aggregans DSM 9485]
 gi|219544492|gb|ACL26230.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aggregans DSM 9485]
          Length = 1029

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           Y++  NC+ C+   C  VCPV         L  +  + C+    C   CP  
Sbjct: 844 YMMPVNCMQCEKAPCEVVCPVAATVHDYEGLNNMVYNRCVGTKYCSNNCPYK 895


>gi|15898912|ref|NP_343517.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) [Sulfolobus solfataricus P2]
 gi|284173031|ref|ZP_06387000.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) protein [Sulfolobus
           solfataricus 98/2]
 gi|1707734|emb|CAA69454.1| orf c01004 [Sulfolobus solfataricus P2]
 gi|13815423|gb|AAK42307.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) [Sulfolobus solfataricus P2]
 gi|261603331|gb|ACX92934.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus solfataricus 98/2]
          Length = 363

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV       +
Sbjct: 263 PTVDFDTCIKCKL--CWVYCPDECFDETPDGYYDIAYDYCVGCGICAEVCPVKDCIVMVD 320

Query: 61  P--------GLELWLKINSEYATQWPNITTKKE 85
                      E+W +  ++Y      +   ++
Sbjct: 321 ESMFTDYRRPYEMWKEDKAKYKEWLKTVRQARK 353


>gi|163846207|ref|YP_001634251.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222523957|ref|YP_002568427.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus sp. Y-400-fl]
 gi|163667496|gb|ABY33862.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222447836|gb|ACM52102.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus sp. Y-400-fl]
          Length = 1029

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           Y++  NC+ C+   C  VCPV         L  +  + C+    C   CP  
Sbjct: 844 YMMPVNCMQCEKAPCEVVCPVAATVHDYEGLNNMVYNRCVGTKYCSNNCPYK 895


>gi|99081333|ref|YP_613487.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99037613|gb|ABF64225.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 247

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T+ C LC    CV  CP D  + G+    L I    C  CG+C   CP
Sbjct: 186 TDGCTLC--QHCVWSCPTDAMHLGDTGNTLEIRDQACTGCGLCASACP 231


>gi|332882373|ref|ZP_08450001.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679757|gb|EGJ52726.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 517

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + T  C+ C    C   C   C +  E+   I    C+ C  C  +CP  AI     
Sbjct: 241 PVIDTSKCVNCNL--CERNCKASCIHIKEHK--IDYSRCVACMNCIDKCPKKAIHYVRP 295



 Score = 33.8 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 16/79 (20%)

Query: 2   TYVVTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEP 48
              V ENC+      +  +C   CP                     ++ + CI CG CE 
Sbjct: 437 AVFVYENCVVNTDGVECGNCARHCPSGAIQMVPSVSGIPDSPRLPVVNEERCIGCGSCEN 496

Query: 49  EC---PVDAIKPDTEPGLE 64
            C   P  AI  +      
Sbjct: 497 LCPARPFSAIYVEGHETHR 515


>gi|317182517|dbj|BAJ60301.1| NADH dehydrogenase subunit I [Helicobacter pylori F57]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|309777240|ref|ZP_07672203.1| putative pyruvate formate-lyase activating enzyme
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915110|gb|EFP60887.1| putative pyruvate formate-lyase activating enzyme
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 298

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +   E C+ C+   C +VCP+      +     H + C  C  CE  C  DAI+ 
Sbjct: 47 FHYKERCVSCR--QCEQVCPMQAITFEQGRFTYHEERCQGCRQCERTCLQDAIQF 99


>gi|288961312|ref|YP_003451651.1| electron transport protein [Azospirillum sp. B510]
 gi|288913620|dbj|BAI75107.1| electron transport protein [Azospirillum sp. B510]
          Length = 181

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   CV  CP +     +N + +  + C+ C  C   CP   +   T P +  +
Sbjct: 58  CHHCEDAPCVNACPNNAIVYRQNSVQVEQERCLGCKNCVLACPFGVMDVVTVPAVRQF 115


>gi|317153236|ref|YP_004121284.1| glutamate synthase (NADPH) [Desulfovibrio aespoeensis Aspo-2]
 gi|316943487|gb|ADU62538.1| Glutamate synthase (NADPH) [Desulfovibrio aespoeensis Aspo-2]
          Length = 508

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + CI CK   CV  C     Y  E    +     +CI C  CE  CP  A+    +P 
Sbjct: 18 DPDLCINCK--VCVRQCSYQAHYFDEARQKVMHDNTKCIGCHRCEALCPTAALNIRNKPS 75

Query: 63 L 63
           
Sbjct: 76 D 76


>gi|257093421|ref|YP_003167062.1| thiamine pyrophosphate protein domain-containing protein
           TPP-binding [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257045945|gb|ACV35133.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 634

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGEN------------FLAIHPDECIDCGVCEPEC 50
           V+ + C  C   +C++V CP       E             F+ I    C  CG+C   C
Sbjct: 549 VIDDKCTGC--GNCIDVGCPAIHVTRRERVTKASGREVDLAFVRIESAACTGCGLCLKPC 606

Query: 51  PVDAIKPDT 59
             DAI    
Sbjct: 607 APDAIVHVD 615


>gi|237716082|ref|ZP_04546563.1| 4Fe-4S ferredoxin [Bacteroides sp. D1]
 gi|262407694|ref|ZP_06084242.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643801|ref|ZP_06721599.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294808462|ref|ZP_06767215.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443729|gb|EEO49520.1| 4Fe-4S ferredoxin [Bacteroides sp. D1]
 gi|262354502|gb|EEZ03594.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640890|gb|EFF59110.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294444390|gb|EFG13104.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 253

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI CK   C + CPV               +C  C  C   CP  A++ 
Sbjct: 188 FYTTDACIGCK--RCEKSCPVGNIMMVGRKPV-WGMDCTSCLACYHVCPQHAVQY 239


>gi|288574319|ref|ZP_06392676.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570060|gb|EFC91617.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 62

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E C+ C+   CV  CPV+     +    +   +C++CG C   CPV+AI
Sbjct: 11 VDKETCVGCE--SCVGTCPVEAIEMNDGKAVVDEGKCVECGACVSACPVEAI 60


>gi|229816607|ref|ZP_04446905.1| hypothetical protein COLINT_03665 [Collinsella intestinalis DSM
           13280]
 gi|229807813|gb|EEP43617.1| hypothetical protein COLINT_03665 [Collinsella intestinalis DSM
           13280]
          Length = 410

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 19/93 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--------------EGENFLAIHPDECIDCGVCEPE 49
           V    CI C+   C  +C                           I  D C+ CG C   
Sbjct: 208 VDEAKCIGCR--ACERICAHGAVSFPTTRERALKNGRVVESPVACIDHDCCVGCGRCIGA 265

Query: 50  CPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
           C  +AI+PD     ++   +N + A     +  
Sbjct: 266 CNQNAIEPDYGAAADV---LNYKIAEYTQAVVQ 295


>gi|210622952|ref|ZP_03293457.1| hypothetical protein CLOHIR_01405 [Clostridium hiranonis DSM 13275]
 gi|210153918|gb|EEA84924.1| hypothetical protein CLOHIR_01405 [Clostridium hiranonis DSM 13275]
          Length = 252

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + ENCI C    C ++CP            I  ++C  C  C   CP  AI    +  +E
Sbjct: 188 INENCIGC--GLCSKICPTQNISIVNLKA-IGGNKCTLCYRCVSNCPQKAITILGKKVIE 244

Query: 65  LWLKIN 70
            +   N
Sbjct: 245 QYKLDN 250


>gi|209363825|ref|YP_001423965.2| NADH dehydrogenase subunit I [Coxiella burnetii Dugway 5J108-111]
 gi|215919184|ref|NP_820423.2| NADH dehydrogenase subunit I [Coxiella burnetii RSA 493]
 gi|206584068|gb|AAO90937.2| NADH-quinone oxidoreductase chain I [Coxiella burnetii RSA 493]
 gi|207081758|gb|ABS78476.2| NADH-quinone oxidoreductase chain I [Coxiella burnetii Dugway
           5J108-111]
          Length = 168

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI+CG CE  CPVDA
Sbjct: 65  EERCIACKL--CEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDA 122

Query: 55  I 55
           I
Sbjct: 123 I 123


>gi|120601153|ref|YP_965553.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris DP4]
 gi|120561382|gb|ABM27126.1| glutamate synthase (NADPH) GltB3 subunit [Desulfovibrio vulgaris
           DP4]
          Length = 777

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 9/55 (16%)

Query: 7   ENCILCKHTD----CVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPV 52
           E C+ C        C  +CP       +       + +  + CI CG C   CP 
Sbjct: 711 EACVSCGACRDCGVCETICPQGAISRRDLGEGRFEMTVDGERCIGCGFCAGACPC 765


>gi|76801934|ref|YP_326942.1| anaerobic dehydrogenase iron-sulfur binding subunit 1 [Natronomonas
           pharaonis DSM 2160]
 gi|76557799|emb|CAI49383.1| anaerobic dehydrogenase subunit (probable iron-sulfur protein)
           [Natronomonas pharaonis DSM 2160]
          Length = 389

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLEL 65
           C  C +  C   CP    Y+ E    + I  D C+    C   CP   AI    E   + 
Sbjct: 159 CNHCTYAACAGSCPAQAIYKREEDGVVLIDEDNCVAWQQCNEACPYKKAIYNMQEGISQK 218


>gi|303240984|ref|ZP_07327494.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302591409|gb|EFL61147.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 297

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            ++  + C  C    C + CPVD    G     I   ECI+CG C  +C 
Sbjct: 249 AHIDKKLCTNC--GLCQKSCPVDAIENG----VIRQSECINCGECRSKCK 292


>gi|299146847|ref|ZP_07039915.1| putative iron-sulfur cluster-binding protein [Bacteroides sp.
           3_1_23]
 gi|298517338|gb|EFI41219.1| putative iron-sulfur cluster-binding protein [Bacteroides sp.
           3_1_23]
          Length = 312

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +VVT+NCI C    C +VCP   +    N + +   +C  C  C   CP  AI+      
Sbjct: 225 FVVTKNCIDC--GACTDVCPRGNYEFTSNGIKM-QGDCDFCFACIQNCPQKAIQFKKNDE 281

Query: 63  L 63
            
Sbjct: 282 D 282


>gi|307686809|ref|ZP_07629255.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
          Length = 167

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + + +NC  CK   C ++CPV       +        C  C  C   CP  AI+ 
Sbjct: 95  FWINDNCNGCKL--CEKICPVKNIRSNTDKPV-WKHNCEQCTACIQYCPRQAIQW 146


>gi|262193778|ref|YP_003264987.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Haliangium ochraceum DSM 14365]
 gi|262077125|gb|ACY13094.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Haliangium ochraceum DSM 14365]
          Length = 445

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  + CI      CV  CP   V     G   L I+P  C+  G C   CPVDAI 
Sbjct: 55  IDPDICIG--SAACVNACPEKDVIGLVHGRAQL-INPLACVGHGACAAACPVDAIN 107


>gi|168701325|ref|ZP_02733602.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Gemmata
            obscuriglobus UQM 2246]
          Length = 1138

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
            TY     C+ C++  C  VCPV    +  +    +  + C+    C   CP  
Sbjct: 960  TYFQPVMCVQCENAPCEIVCPVGATVHSSDGLNDMAYNRCVGTRYCSNNCPYK 1012


>gi|167765929|ref|ZP_02437982.1| hypothetical protein CLOSS21_00420 [Clostridium sp. SS2/1]
 gi|167712427|gb|EDS23006.1| hypothetical protein CLOSS21_00420 [Clostridium sp. SS2/1]
 gi|291559826|emb|CBL38626.1| glycyl-radical enzyme activating protein family [butyrate-producing
           bacterium SSC/2]
          Length = 302

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M Y   + C  C    C+E CP       +  L      C  CG C+  C  DA+
Sbjct: 50  MYY--EKKCTGC--GRCLENCPNHALNVQDGKLVCDKKLCTQCGNCQKACLNDAV 100


>gi|167470482|ref|ZP_02335186.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis FV-1]
          Length = 190

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 112 AFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIEM 166


>gi|95931300|ref|ZP_01314017.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132660|gb|EAT14342.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
          Length = 588

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDA 54
           +  + C  CK   C+++ CP   +           ++   C+ CG+C+  C  DA
Sbjct: 529 IDPDKCTGCK--ACLKIGCPAIEWQPDAGERGKAYVNQLLCVGCGICDQLCKFDA 581


>gi|46581693|ref|YP_012501.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451116|gb|AAS97761.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235329|gb|ADP88183.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio vulgaris RCH1]
          Length = 776

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 9/55 (16%)

Query: 7   ENCILCKHTD----CVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPV 52
           E C+ C        C  +CP       +       + +  + CI CG C   CP 
Sbjct: 710 EACVSCGACRDCGVCETICPQGAISRRDLGEGRFEMTVDGERCIGCGFCAGACPC 764


>gi|301630890|ref|XP_002944549.1| PREDICTED: nitrogen fixation protein fixG-like [Xenopus (Silurana)
           tropicalis]
          Length = 474

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                +CI CG+C   C     K      L  +  
Sbjct: 268 CIDCSL--CVQVCPTGIDIRHGLQY-----DCIGCGLCVDACNTVMDKMKYPRSLIRYTT 320

Query: 69  INSEYATQWPN 79
            N   A  W N
Sbjct: 321 QNG-VAQGWTN 330


>gi|153930946|ref|YP_001382420.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936038|ref|YP_001385972.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
 gi|152926990|gb|ABS32490.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931952|gb|ABS37451.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
          Length = 387

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP   +        G+     +  +CI C  C+  CP  AI
Sbjct: 317 IKEKCIGCN--RCAEVCPEKPYVIDMIKKGGKKIPVWNMKKCIRCFCCQELCPKGAI 371


>gi|126179024|ref|YP_001046989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125861818|gb|ABN57007.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 266

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + V++ C  C    C  VCP       +   A     C  C  C   CP +AI+
Sbjct: 186 AFSVSDACTGC--GTCTRVCPAGNLTLTDGRPA-WGRRCELCCACLHFCPTEAIQ 237


>gi|85858317|ref|YP_460519.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophus
           aciditrophicus SB]
 gi|85859241|ref|YP_461443.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophus
           aciditrophicus SB]
 gi|85721408|gb|ABC76351.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophus
           aciditrophicus SB]
 gi|85722332|gb|ABC77275.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophus
           aciditrophicus SB]
          Length = 243

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVD 53
           Y+  E C  C    C   CP+D     +  + I    +CI CG C   CP  
Sbjct: 162 YIDPEKCQAC--MTCARRCPMDAIISAKKEVHIIEQDKCIRCGACFAACPPQ 211


>gi|88799940|ref|ZP_01115512.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Reinekea
           sp. MED297]
 gi|88777371|gb|EAR08574.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Reinekea
           sp. MED297]
          Length = 196

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT-EPGL 63
            + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I     E  L
Sbjct: 109 EDECIGC--TKCIQACPVDAILGAAKQMHTVIESECTGCDLCVEPCPVDCIDMVPIEDTL 166

Query: 64  ELWLKINSEYATQWPNITTKKES 86
             W + N   +      T +   
Sbjct: 167 ATWHQ-NRPLSNIELIATDRPTP 188


>gi|323697908|ref|ZP_08109820.1| Glutamate synthase (NADPH) [Desulfovibrio sp. ND132]
 gi|323457840|gb|EGB13705.1| Glutamate synthase (NADPH) [Desulfovibrio desulfuricans ND132]
          Length = 509

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            E CI CK   CV  C  +  Y  E    +     +CI C  CE  CP  A+    +P 
Sbjct: 18 DPELCINCK--VCVRQCSYEAHYWDEARQKVMHDNSKCIGCHRCEALCPTAALNIIKKPS 75

Query: 63 L 63
           
Sbjct: 76 D 76


>gi|320353709|ref|YP_004195048.1| Fe-S cluster domain-containing protein [Desulfobulbus propionicus
          DSM 2032]
 gi|320122211|gb|ADW17757.1| Fe-S cluster domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 579

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          Y     C  C    CV  CPV      + +  I  + C+ CG+C   CP  A  
Sbjct: 8  YTEKHECQDCYK--CVRQCPVKAIRVQDAYATIVDEMCVYCGICVSICPNTAKH 59


>gi|242399111|ref|YP_002994535.1| Putative oxidoreductase, Fe-S subunit [Thermococcus sibiricus MM
           739]
 gi|242265504|gb|ACS90186.1| Putative oxidoreductase, Fe-S subunit [Thermococcus sibiricus MM
           739]
          Length = 183

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           V + C+ C    CV+ CPVD     E    + +  ++CI+CG C   CP
Sbjct: 62  VPQTCVQCPDYPCVKACPVDALSVNEKTGAVLVDEEKCIECGACITACP 110


>gi|219871791|ref|YP_002476166.1| electron transport complex protein RnfB [Haemophilus parasuis
           SH0165]
 gi|219691995|gb|ACL33218.1| electron transport complex protein RnfB/NADH:ubiquinone
           oxidoreductase, subunit RnfB [Haemophilus parasuis
           SH0165]
          Length = 202

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  E CI C  T C+  CPVD      +    +  D C  C +C   CP D I+ 
Sbjct: 108 AYIHEELCIGC--TKCIAACPVDAIVGTNKAMHTVIADFCTGCELCVAPCPTDCIEM 162


>gi|212702517|ref|ZP_03310645.1| hypothetical protein DESPIG_00535 [Desulfovibrio piger ATCC 29098]
 gi|212673958|gb|EEB34441.1| hypothetical protein DESPIG_00535 [Desulfovibrio piger ATCC 29098]
          Length = 170

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C+  C  D  +  E  +  I  D C  CG C   CP      D
Sbjct: 58  CVHCARPACLRACEHDAMWLDEENIVHIDADRCTGCGACVTACPYHVPHLD 108


>gi|187935770|ref|YP_001887225.1| sulfite reductase, subunit C [Clostridium botulinum B str. Eklund
           17B]
 gi|187723923|gb|ACD25144.1| sulfite reductase, subunit C [Clostridium botulinum B str. Eklund
           17B]
          Length = 320

 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 5   VTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ C    CV  C    VD        +  + ++CI CG C   CP  A       
Sbjct: 168 DKDRCVSC--GACVRACKKKSVDALKAVNYKIVRNEEKCIGCGECVINCPTGA----WTR 221

Query: 62  GLELWLKI 69
             E + K+
Sbjct: 222 SKEKYYKL 229


>gi|323704242|ref|ZP_08115821.1| protein of unknown function DUF362 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536308|gb|EGB26080.1| protein of unknown function DUF362 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 378

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    CV  CP       E+   +    CI C  C+  CP  A+        +L+
Sbjct: 319 DACKSC--GICVTNCPPKALKMVESKPIVDLKACIRCFCCQELCPHKAVSIKKPSIAKLF 376

Query: 67  L 67
            
Sbjct: 377 Y 377


>gi|322515130|ref|ZP_08068133.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Actinobacillus ureae ATCC 25976]
 gi|322118844|gb|EFX91034.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Actinobacillus ureae ATCC 25976]
          Length = 225

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       +      C+ C  C   CP        E
Sbjct: 93  QSCQHCTNAPCVAVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPE 148


>gi|295085232|emb|CBK66755.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 253

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI CK   C + CPV               +C  C  C   CP  A++ 
Sbjct: 188 FYTTDACIGCK--RCEKSCPVGNIMMVGRKPV-WGMDCTSCLACYHVCPQHAVQY 239


>gi|317129633|ref|YP_004095915.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474581|gb|ADU31184.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 180

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ CK   C  VCP +     ++ + +    ++CI C  C   CP    K D E    
Sbjct: 52  CMQCKDPACARVCPANAIQITDDGVVLSAMEEKCIGCRNCTFGCPFGIPKFDFEENKM 109


>gi|167585418|ref|ZP_02377806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia ubonensis Bu]
          Length = 89

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPGKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHAETHAQLMEKY 76


>gi|218780385|ref|YP_002431703.1| nitroreductase [Desulfatibacillum alkenivorans AK-01]
 gi|218761769|gb|ACL04235.1| nitroreductase [Desulfatibacillum alkenivorans AK-01]
          Length = 347

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 7/77 (9%)

Query: 4  VVTENCILCKHTDCVEVCPV-----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V  E CI C    CV  CP+     D   +           CI C  C   CP DAI   
Sbjct: 21 VDDEKCIGC--GRCVNSCPIQLLMLDSDKKARPNERYDHFRCICCQNCAASCPNDAITIQ 78

Query: 59 TEPGLELWLKINSEYAT 75
           +  +      N     
Sbjct: 79 GDYRVHEGFWKNDNLFE 95


>gi|144900499|emb|CAM77363.1| Nitrogen fixation protein fixG [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 439

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 7/46 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI CK   CV+VCP                 CI CG+C   C    
Sbjct: 224 CIDCKM--CVQVCPTGIDIREGL-----QMACIGCGLCVDACNTMM 262


>gi|146308115|ref|YP_001188580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina ymp]
 gi|145576316|gb|ABP85848.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pseudomonas
           mendocina ymp]
          Length = 470

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 7/46 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C  T CV+VCP          L     ECI CG C   C    
Sbjct: 270 CIDC--TLCVQVCPTGIDIRDGLQL-----ECIGCGACIDACDNVM 308


>gi|332298930|ref|YP_004440852.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
 gi|332182033|gb|AEE17721.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
          Length = 584

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPGLELWL 67
          C  C    C+  CPV           I  + CI CG C   CP  A +  D    ++  L
Sbjct: 14 CQDCYK--CIRRCPVKAIRVENGHAKIISELCIVCGRCVINCPAHAKRSRDDSARVKQLL 71

Query: 68 KINSE 72
          K+  +
Sbjct: 72 KLKEK 76


>gi|330835618|ref|YP_004410346.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Metallosphaera cuprina Ar-4]
 gi|329567757|gb|AEB95862.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Metallosphaera cuprina Ar-4]
          Length = 88

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +V+E CI C    C   CP            ++ + C  CGVC   CPV AI   +E
Sbjct: 33 IVSERCIACN--ACFLWCPEGTIQVRGKRAEVNYEYCKGCGVCANVCPVKAISMVSE 87


>gi|261838591|gb|ACX98357.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 51]
 gi|317180994|dbj|BAJ58780.1| NADH dehydrogenase subunit I [Helicobacter pylori F32]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|260576927|ref|ZP_05844909.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259020863|gb|EEW24177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 544

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 8   NCILCKHTD-CVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C  C   D C  VCP +   +        I+ D C  CG+C  ECP  AI    E 
Sbjct: 487 SCGNCFECDTCYGVCPDNAVIKLGSGMGFTINLDYCKGCGICAAECPCGAIDMVPEE 543


>gi|253578706|ref|ZP_04855977.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849649|gb|EES77608.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 263

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP            I   +C +CG C+  CP   I+
Sbjct: 218 CIGCKK--CEKTCPNGAITVDNFCAHIDYSKCTNCGACKEVCPRHIIQ 263



 Score = 36.1 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C     CV+ CP            +  + C  CG C  +CP   I
Sbjct: 143 GCLGFGSCVKACPFGAIDVVNGVAVVDKEACKACGKCVAKCPKHLI 188


>gi|254519300|ref|ZP_05131356.1| polyferredoxin [Clostridium sp. 7_2_43FAA]
 gi|226913049|gb|EEH98250.1| polyferredoxin [Clostridium sp. 7_2_43FAA]
          Length = 265

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI CK   C   CP D  +   N   +  D+C++C +C  +CP  AI
Sbjct: 214 ACIGCKL--CERNCPKDAVHVTNNLAKVDYDKCVNCQLCTKKCPTGAI 259


>gi|219853104|ref|YP_002467536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219547363|gb|ACL17813.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 424

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 20/77 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-------------CFYEGENFLAI-----HPDECIDCG 44
           ++  + C  C   DC EVCPV+               Y+    +        PD CI+CG
Sbjct: 98  FIDPDLCNGC--GDCEEVCPVEVYNRFDAGIGVRKAIYKPHAQVVPNIMIKDPDHCIECG 155

Query: 45  VCEPECPVDAIKPDTEP 61
           +C   C  +A+  +  P
Sbjct: 156 LCYDICGRNAVLREQSP 172


>gi|220936154|ref|YP_002515053.1| iron-sulfur cluster-binding protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997464|gb|ACL74066.1| iron-sulfur cluster-binding protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 468

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C +  CV+VCP                +CI C +C   C     K +   GL  +  
Sbjct: 266 CIDCGY--CVQVCPTGIDIRNGLQY-----QCIHCALCVDACDTIMDKMNWPRGLIRYTS 318

Query: 69  INS 71
            N+
Sbjct: 319 ENA 321


>gi|154174565|ref|YP_001407454.1| NADH dehydrogenase subunit I [Campylobacter curvus 525.92]
 gi|112803235|gb|EAU00579.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit
           i) (ndh-1 subunit i) [Campylobacter curvus 525.92]
          Length = 231

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 6   TENCILCKHT--DCVEVCPV------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            E CI C      CV  C        +   +     +I+   C+ CG C   CP  AI  
Sbjct: 80  NERCIGCGLCEKICVSNCIAMQTALDENGRKATLKYSINLGRCVYCGFCADVCPELAIVH 139

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                   +      Y     +  TK + L    + +G
Sbjct: 140 GDRY---EFASEQRAYFGMKDDFLTKDKDLSEQTEFEG 174


>gi|90579149|ref|ZP_01234959.1| electron transport complex protein RnfB [Vibrio angustum S14]
 gi|90439982|gb|EAS65163.1| electron transport complex protein RnfB [Vibrio angustum S14]
          Length = 194

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|15899473|ref|NP_344078.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
          delta chain) (porD-2) [Sulfolobus solfataricus P2]
 gi|284174280|ref|ZP_06388249.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
          delta chain) (porD-2) [Sulfolobus solfataricus 98/2]
 gi|13816089|gb|AAK42868.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
          delta chain) (porD-2) [Sulfolobus solfataricus P2]
          Length = 94

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V    CI CK   C   CP          + +  + C  CGVC   CPV AI   +E
Sbjct: 37 PVVDYSKCIGCK--ACFMFCPESTIVPSNGKVRVDYEYCKGCGVCANVCPVKAISMVSE 93


>gi|303245128|ref|ZP_07331444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302484511|gb|EFL47459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 656

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCG 44
           Y+    C  C    C EVCP++   E +                      I  + CI+CG
Sbjct: 240 YLDETKCTGC--GQCAEVCPIEVPNEFDMGLGTRKAIYKPFPQAVPAKYTIDKEHCIECG 297

Query: 45  VCEPECPVDAIKPDTEPG 62
           +C   C   AI  + +P 
Sbjct: 298 LCSTVCGPKAIDYNQKPE 315



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C  C    CV+ CP           G+    +    C  CG C   CP  A++  
Sbjct: 579 VNEDICGGC--GVCVKQCPYGAPIMVEKENGKLVANVISALCKGCGTCAAGCPSGAMEQH 636

Query: 59  TEPGLELWLKI 69
               ++L+ +I
Sbjct: 637 HFKTIQLFNQI 647


>gi|296412563|ref|XP_002835993.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629791|emb|CAZ80150.1| unnamed protein product [Tuber melanosporum]
          Length = 568

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C + CPV                  I    CI CG+C  +CP  A
Sbjct: 11 VSTDKCKPKKCR-QECKKSCPVVRTGRLCIEVTPESRIAFISEQLCIGCGICPKKCPFGA 69

Query: 55 IK 56
          I 
Sbjct: 70 IH 71


>gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
 gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
          Length = 597

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C   CPV C      +   I  + CI CG C  +CP  AI
Sbjct: 544 IDQDLCKRC--GLCARNCPVHCIPGDRASGYTIDTERCIRCGTCFEKCPFGAI 594


>gi|297526981|ref|YP_003669005.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Staphylothermus hellenicus DSM 12710]
 gi|297255897|gb|ADI32106.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Staphylothermus hellenicus DSM 12710]
          Length = 96

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            V    C+ C    C   CP          + I+ D C  CG+C  ECPV+AI    EP
Sbjct: 37 PVVDLNKCVKC--MLCWIFCPDMAIVWDGEKIVINYDYCKGCGICAHECPVNAITMVPEP 94

Query: 62 GL 63
            
Sbjct: 95 TE 96


>gi|170749599|ref|YP_001755859.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656121|gb|ACB25176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C  T C++VCP        + + I P  C  CG C   CP  A          L  ++
Sbjct: 281 TGC--TRCLDVCPTGAIAPAGDTVRIDPYVCAGCGSCAALCPTGAAAYALPTSDALMRRL 338


>gi|152995572|ref|YP_001340407.1| electron transport complex protein RnfB [Marinomonas sp. MWYL1]
 gi|150836496|gb|ABR70472.1| electron transport complex, RnfABCDGE type, B subunit [Marinomonas
           sp. MWYL1]
          Length = 198

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 108 AVIREDECIGC--TKCIQACPVDAILGAAKQMHTVIADECTGCDLCVEPCPVDCIDM 162



 Score = 35.7 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           M  V+ + C  C    CVE CPVDC    E  + 
Sbjct: 137 MHTVIADECTGCDL--CVEPCPVDCIDMVEVGVT 168


>gi|30020254|ref|NP_831885.1| respiratory nitrate reductase beta chain [Bacillus cereus ATCC
           14579]
 gi|29895804|gb|AAP09086.1| Respiratory nitrate reductase beta chain [Bacillus cereus ATCC
           14579]
          Length = 491

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +    C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQIACRAWRFCVSSCPYKKVYFNWQTNKAE 240


>gi|294494958|ref|YP_003541451.1| cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
 gi|292665957|gb|ADE35806.1| Cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
          Length = 285

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            E C  C    CV+ C      EG     I P  C  CGVCE  CP DA+  +     E 
Sbjct: 65  PELCTGC--GICVDHCRFGAIKEG---FEIDPYICEGCGVCEYVCPADAVTMEYNKCGEA 119

Query: 66  W 66
           +
Sbjct: 120 Y 120


>gi|282164586|ref|YP_003356971.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
          paludicola SANAE]
 gi|282156900|dbj|BAI61988.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
          paludicola SANAE]
          Length = 274

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK---PDT 59
          +  E C  C   +C+  CP       E     I    C   G C   CP  AI     + 
Sbjct: 8  IDNEKCTGC--GECIPDCPEGAIQLIEGKARLISDLFCDGLGACIGTCPQGAICVIEREA 65

Query: 60 EPGLELWLKIN 70
          EP  E  +  N
Sbjct: 66 EPYDEKKVMEN 76


>gi|289193023|ref|YP_003458964.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus sp.
           FS406-22]
 gi|288939473|gb|ADC70228.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus sp.
           FS406-22]
          Length = 269

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + ENC+ C    C+++C  D   + +    I+P  C  CG CE  C  +AI
Sbjct: 63  YKINENCVKC--GKCLDICQFDAIEDFK----INPILCEGCGACELICEFNAI 109


>gi|253579942|ref|ZP_04857210.1| sensory box-containing hydrogenase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848941|gb|EES76903.1| sensory box-containing hydrogenase [Ruminococcus sp. 5_1_39BFAA]
          Length = 574

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +C  C    CV  CPV      ++   I   +CI C  C   CP DA
Sbjct: 14 SCKNCYK--CVRNCPVKAIRVHDHQARIIESQCIYCEKCILVCPQDA 58


>gi|241768212|ref|ZP_04765649.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           delafieldii 2AN]
 gi|241360346|gb|EER57547.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           delafieldii 2AN]
          Length = 171

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y+    CI C  T C++ CP D           +    C  C +C P CPVD I+ +
Sbjct: 85  YIDENWCIGC--TLCIKACPTDAIVGANKLMHTVLESHCTGCELCIPVCPVDCIQIE 139


>gi|217033589|ref|ZP_03439017.1| hypothetical protein HP9810_899g25 [Helicobacter pylori 98-10]
 gi|216943935|gb|EEC23369.1| hypothetical protein HP9810_899g25 [Helicobacter pylori 98-10]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|213963674|ref|ZP_03391925.1| anaeroBic dimethyl sulfoxide reductase chain b [Capnocytophaga
           sputigena Capno]
 gi|213953669|gb|EEB65000.1| anaeroBic dimethyl sulfoxide reductase chain b [Capnocytophaga
           sputigena Capno]
          Length = 191

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPV 52
           C+ C    C  VCP D   + E  +       +CI C  C   CP 
Sbjct: 60  CMHCDDPICANVCPADAIVKDEFGIVHSADVSKCIGCANCVLSCPF 105


>gi|134298365|ref|YP_001111861.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051065|gb|ABO49036.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 1   MT-YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M  ++ ++ C  C    C + CP+      +    +   +CI CG C   C    +  D 
Sbjct: 166 MPLFINSDKCTNC--GLCTKACPMGLVPNVDENGQLTDPDCIKCGSCVVACNRKVLSFDV 223

Query: 60  EPGL 63
               
Sbjct: 224 PTND 227


>gi|160878253|ref|YP_001557221.1| putative PAS/PAC sensor protein [Clostridium phytofermentans
          ISDg]
 gi|160426919|gb|ABX40482.1| putative PAS/PAC sensor protein [Clostridium phytofermentans
          ISDg]
          Length = 577

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  C V      +    I  D+CI CG C   CP +A
Sbjct: 10 KCKNCYK--CVRNCDVKAITVKDAQAYIMNDKCILCGHCLEVCPQNA 54



 Score = 33.8 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFY 27
           Y++ + CILC    C+EVCP +   
Sbjct: 33 AYIMNDKCILC--GHCLEVCPQNAKT 56


>gi|15612254|ref|NP_223907.1| NADH dehydrogenase subunit I [Helicobacter pylori J99]
 gi|81555114|sp|Q9ZJV9|NUOI_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|4155779|gb|AAD06755.1| NADH oxidoreductase I [Helicobacter pylori J99]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|330504281|ref|YP_004381150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina NK-01]
 gi|328918567|gb|AEB59398.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina NK-01]
          Length = 470

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C  T CV+VCP          L     ECI CG C   C 
Sbjct: 270 CIDC--TVCVQVCPTGIDIRDGLQL-----ECIGCGACVDACD 305


>gi|325969912|ref|YP_004246103.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta sp.
           Buddy]
 gi|324025150|gb|ADY11909.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta sp.
           Buddy]
          Length = 1177

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 32/107 (29%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE---------------------------NFLA 34
            + ++ENCI C    CV+ CP       +                             + 
Sbjct: 682 PHWISENCIQCN--QCVQSCPHAAIRAKQIDPKDLEGAPETFKTLKSGTKNDRNLQFKIQ 739

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK---INSEYATQWP 78
           I+ ++C  CGVC   CP      +  P           N+E+    P
Sbjct: 740 IYTEDCQGCGVCVETCPSKVKSLELSPIATERAAGEVANAEFFETLP 786


>gi|313157089|gb|EFR56519.1| ferredoxin [Alistipes sp. HGB5]
          Length = 361

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C +VC  D      N   I P +C  C  C  ECP  AI
Sbjct: 221 CIGC--GKCQKVCAFDAITIANNLAYIDPQKCKLCRKCVNECPTGAI 265


>gi|303246786|ref|ZP_07333063.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio fructosovorans JJ]
 gi|302491803|gb|EFL51683.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio fructosovorans JJ]
          Length = 776

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-----ENFLAIHPDECIDCGVCEPECPV 52
            C  C    C  +CP            E  +   P +CI CG C   CP 
Sbjct: 717 ACRDC--GVCTMICPTGAISRNQLEDKEFEMVSDPAKCIGCGFCANACPC 764


>gi|300855872|ref|YP_003780856.1| putative Fe-S cluster protein [Clostridium ljungdahlii DSM 13528]
 gi|300435987|gb|ADK15754.1| predicted Fe-S cluster protein [Clostridium ljungdahlii DSM 13528]
          Length = 376

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ E C  C+   C   C  +     +    + I+ + C+ CG C   C   AI      
Sbjct: 192 IIQEKCKGCR--RCQRECANNGLMFDDVKKKMTINTENCVGCGRCLGACNFGAIAF---T 246

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
                 ++N   A     +   +  
Sbjct: 247 NWAANKELNCRMAEYTKAVVDGRPC 271


>gi|256845223|ref|ZP_05550681.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_36A2]
 gi|256718782|gb|EEU32337.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_36A2]
          Length = 324

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A     +   
Sbjct: 172 DRCVAC--GACVKKCKKVSVEALKMENNKIVRDANKCIGCGECVINCPMSAWTRSPKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
           +L +     K N   A  W
Sbjct: 230 KLMIMGRTGKKNPRLAEDW 248


>gi|253997321|ref|YP_003049385.1| RnfABCDGE type electron transport complex subunit B [Methylotenera
           mobilis JLW8]
 gi|253984000|gb|ACT48858.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylotenera mobilis JLW8]
          Length = 200

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
            ++    CI C  T C++ CPVD      ++   I   EC  C +C   CPVD I     
Sbjct: 107 AFIDEATCIGC--TLCIQACPVDAILGAAKHMHTIIASECTGCELCLAPCPVDCISMQPL 164

Query: 59  -TEPGLELW 66
              P    W
Sbjct: 165 AETPDNWKW 173


>gi|251780214|ref|ZP_04823134.1| nitroreductase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084529|gb|EES50419.1| nitroreductase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 258

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    C   CPV+     +    I    CI C  CE  CP  AI
Sbjct: 9  VNKDLCIGC--GLCKNDCPVNNITIIDKKSNIKNQNCIKCCHCEAICPTKAI 58


>gi|238924008|ref|YP_002937524.1| ferredoxin [Eubacterium rectale ATCC 33656]
 gi|238875683|gb|ACR75390.1| ferredoxin [Eubacterium rectale ATCC 33656]
 gi|291524748|emb|CBK90335.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium
           rectale DSM 17629]
 gi|291528931|emb|CBK94517.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium
           rectale M104/1]
          Length = 263

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP D  +  +N   I  ++C  CG+C  +CP   I
Sbjct: 218 CIGC--HLCEKNCPSDAVHVVDNVAYIDQEKCTGCGICAEKCPKKII 262



 Score = 38.0 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  +  CV+ CP D  +  +    ++P  C  CG C   CP   I
Sbjct: 143 GCLGYGSCVKACPFDSIHVVDGVACVNPLTCKACGKCVEACPKHLI 188


>gi|237738506|ref|ZP_04568987.1| ferredoxin [Fusobacterium mortiferum ATCC 9817]
 gi|229420386|gb|EEO35433.1| ferredoxin [Fusobacterium mortiferum ATCC 9817]
          Length = 256

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            + CILCK   C +VCPV              ++CI C  C   C  +  +    P   +
Sbjct: 182 NDKCILCKK--CWKVCPVGAIDSNNPTNV-DIEKCIHCYACIKICEFEGREVINNPVQPI 238

Query: 66  WLKINSEYATQWPN 79
              + S++  +   
Sbjct: 239 IEMLESKFRERKEP 252


>gi|261856542|ref|YP_003263825.1| NADH-quinone oxidoreductase, chain I [Halothiobacillus neapolitanus
           c2]
 gi|261837011|gb|ACX96778.1| NADH-quinone oxidoreductase, chain I [Halothiobacillus neapolitanus
           c2]
          Length = 162

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIESEQRADGTRRTTRYDIDLFKCIYCGFCEEACPVDSI 117


>gi|226326958|ref|ZP_03802476.1| hypothetical protein PROPEN_00818 [Proteus penneri ATCC 35198]
 gi|225204795|gb|EEG87149.1| hypothetical protein PROPEN_00818 [Proteus penneri ATCC 35198]
          Length = 312

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +      CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINEEDN 155


>gi|298531053|ref|ZP_07018454.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509076|gb|EFI32981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 356

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C    C   C V  F +  +      P  C+ C  C   CP +    + 
Sbjct: 116 CMHCLEPACAHSCFVKAFAKRPDGAVTYDPKVCVGCRYCMMACPFNIPAYEY 167


>gi|171060171|ref|YP_001792520.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Leptothrix cholodnii SP-6]
 gi|170777616|gb|ACB35755.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
          cholodnii SP-6]
          Length = 90

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI------DCGVCEPECPVDA 54
          M  ++T  CI C    C   CP      GE++  I P  C           C   CPV+ 
Sbjct: 1  MALIITSECINCD--VCEPECPNQAISMGEDYYVIDPARCTECVGHFGEPQCVQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D    +E   ++  +Y
Sbjct: 59 IPVD-PAHVETHQQLERKY 76


>gi|52549899|gb|AAU83748.1| hypothetical protein GZ33E1_45 [uncultured archaeon GZfos33E1]
          Length = 69

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +V    C+ C   +C EVC        +    +  + CI C +C   CP  A
Sbjct: 11 AFVDENLCVGC--GNCTEVCWTGAIRIIDKKAVVDFNRCICCAICVRTCPRGA 61


>gi|161830697|ref|YP_001597284.1| NADH dehydrogenase subunit I [Coxiella burnetii RSA 331]
 gi|81722524|sp|Q83BR3|NUOI_COXBU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030927|sp|A9KBL3|NUOI_COXBN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030928|sp|A9N8W4|NUOI_COXBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|161762564|gb|ABX78206.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA
           331]
          Length = 163

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI+CG CE  CPVDA
Sbjct: 60  EERCIACKL--CEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDA 117

Query: 55  I 55
           I
Sbjct: 118 I 118


>gi|308183378|ref|YP_003927505.1| NADH dehydrogenase subunit I [Helicobacter pylori PeCan4]
 gi|308065563|gb|ADO07455.1| NADH dehydrogenase subunit I [Helicobacter pylori PeCan4]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|319763386|ref|YP_004127323.1| oxidoreductase fad-binding domain protein [Alicycliphilus
          denitrificans BC]
 gi|317117947|gb|ADV00436.1| Oxidoreductase FAD-binding domain protein [Alicycliphilus
          denitrificans BC]
          Length = 362

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 4  VVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDEC-IDCGVCEPECPVDAI 55
          ++ + CI C    CV  C        ++ +  + + P  C + C  C   CP  AI
Sbjct: 24 IIEDACIGC--GTCVTGCSRLVYRFDFDRKKPVVVDPLNCMVGCTTCANTCPAHAI 77


>gi|297380448|gb|ADI35335.1| NADH-quinone oxidoreductase, chain I [Helicobacter pylori v225d]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|262402645|ref|ZP_06079206.1| electron transport complex protein RnfB [Vibrio sp. RC586]
 gi|262351427|gb|EEZ00560.1| electron transport complex protein RnfB [Vibrio sp. RC586]
          Length = 195

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G      +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKNECTGCDLCVAPCPTDCIEMIPI 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|225572040|ref|ZP_03780904.1| hypothetical protein RUMHYD_00334 [Blautia hydrogenotrophica DSM
          10507]
 gi|225040475|gb|EEG50721.1| hypothetical protein RUMHYD_00334 [Blautia hydrogenotrophica DSM
          10507]
          Length = 584

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +C  C    CV  C V           I  +ECI CG C   CP +A
Sbjct: 10 SCRHCYK--CVRNCEVKAISVQNQQARIIEEECIYCGHCLEVCPQNA 54


>gi|212696379|ref|ZP_03304507.1| hypothetical protein ANHYDRO_00916 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325848830|ref|ZP_08170340.1| glycyl-radical enzyme activating protein family protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676657|gb|EEB36264.1| hypothetical protein ANHYDRO_00916 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325480474|gb|EGC83536.1| glycyl-radical enzyme activating protein family protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 320

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
            CI C    CV+VCP    Y       +H D  CI C  CE  C   AI+   E  
Sbjct: 64  ACINC--GQCVDVCPKKIHYMENGIHKVHRDITCIGCRRCEKNCLQKAIEIVGEDK 117


>gi|119897052|ref|YP_932265.1| ferredoxin [Azoarcus sp. BH72]
 gi|119669465|emb|CAL93378.1| probable ferredoxin [Azoarcus sp. BH72]
          Length = 85

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T+ CI C    C   CP     +G+    I P++C +C        C+  CPVD 
Sbjct: 1  MSLIITDECINCD--VCEPECPNGAISQGDEIYQIDPNKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  ++
Sbjct: 59 IPHD-PDHQETKDQLMQKF 76


>gi|147921293|ref|YP_684893.1| NADPH-dependent glutamate synthase large subunit [uncultured
          methanogenic archaeon RC-I]
 gi|110620289|emb|CAJ35567.1| NADPH-dependent glutamate synthase, large subunit domain 2
          [uncultured methanogenic archaeon RC-I]
          Length = 503

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 5  VTE-NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
          + +  C  CK   CV+ C  +     + +  I     +C+ C  C   CP  AI+ +   
Sbjct: 13 INDRKCARCK--RCVDECGFEALTYSKEYHEIIADDAKCVACHRCATMCPKHAIRIEDNA 70

Query: 62 GLELWLKINSEYATQW 77
              +   N+ ++ Q 
Sbjct: 71 LAYKY---NANFSAQH 83


>gi|56752941|gb|AAW24682.1| SJCHGC09319 protein [Schistosoma japonicum]
          Length = 137

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 35  EERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 92

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMD 94
                         N EY+TQ     +  K++ L +  + +
Sbjct: 93  VEGP----------NFEYSTQTHEELLYNKEKLLQNGDRWE 123


>gi|68171162|ref|ZP_00544570.1| NADH-quinone oxidoreductase, chain I [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88657739|ref|YP_507496.1| NADH dehydrogenase subunit I [Ehrlichia chaffeensis str. Arkansas]
 gi|115502529|sp|Q2GGD7|NUOI_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|67999432|gb|EAM86073.1| NADH-quinone oxidoreductase, chain I [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599196|gb|ABD44665.1| NADH dehydrogenase I, I subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 169

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 67  EERCIACKL--CEAICPAQAITIEAQERDDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 124


>gi|327401724|ref|YP_004342563.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327317232|gb|AEA47848.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 756

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C  C+   C   CP       + F  + P  C  CG+C   CP +AI+
Sbjct: 561 VDQDLCSACR--ICEAACPHGAIDVKD-FAYVDPAFCQGCGLCMAACPSNAIQ 610



 Score = 40.7 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 19/77 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-------------CFYEGENFLAIHPD----ECIDCGV 45
           YV    CI C    C EVCPVD                +              EC  CG 
Sbjct: 237 YVDPSRCISC--GKCSEVCPVDVENSFDCGMSKRKAIDKEFKLAIPDIYNIVEECTKCGE 294

Query: 46  CEPECPVDAIKPDTEPG 62
           C   CP +AI  D E  
Sbjct: 295 CVEACPTNAINLDAEEE 311


>gi|310827343|ref|YP_003959700.1| hypothetical protein ELI_1751 [Eubacterium limosum KIST612]
 gi|308739077|gb|ADO36737.1| hypothetical protein ELI_1751 [Eubacterium limosum KIST612]
          Length = 151

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
          C+ C+   C++VCPV      EN    +   +CI C +C   CP+  I
Sbjct: 48 CMQCEEPACMKVCPVGAISRNENGAFVMDEAKCIVCKMCMNACPLGNI 95


>gi|291278907|ref|YP_003495742.1| electron transport complex protein RnfB [Deferribacter
           desulfuricans SSM1]
 gi|290753609|dbj|BAI79986.1| electron transport complex protein RnfB [Deferribacter
           desulfuricans SSM1]
          Length = 260

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C+   C + CP D      N   IH ++CI+CG CE  CP  AI
Sbjct: 213 CIGCRL--CAKNCPEDAITVENNLAYIHAEKCINCGKCEEVCPTKAI 257



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 9   CI-LC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI  C     CV+ C  D    G+N +  +  ++C  CG+C   CP + I  +     + 
Sbjct: 134 CIYGCVGGGSCVKACNFDALKMGDNGIPVVDEEKCTACGLCVKACPRNLI--ELIDVEKK 191

Query: 66  WL 67
           ++
Sbjct: 192 FI 193


>gi|256821523|ref|YP_003145486.1| NADH dehydrogenase subunit I [Kangiella koreensis DSM 16069]
 gi|256795062|gb|ACV25718.1| NADH-quinone oxidoreductase, chain I [Kangiella koreensis DSM
           16069]
          Length = 163

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG CE  CPVD+
Sbjct: 60  EERCIACKL--CEAVCPAAAITIEAGPRESDGTRRTTRYEIDMFKCIYCGFCEESCPVDS 117

Query: 55  I 55
           I
Sbjct: 118 I 118


>gi|212711816|ref|ZP_03319944.1| hypothetical protein PROVALCAL_02891 [Providencia alcalifaciens
          DSM 30120]
 gi|212685338|gb|EEB44866.1| hypothetical protein PROVALCAL_02891 [Providencia alcalifaciens
          DSM 30120]
          Length = 294

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 4  VVTENCIL-------CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V+ + C+        C +  C   CPV     G     I  + C  CG C   CPVDAI+
Sbjct: 14 VINDKCVHKRLKNSVCNN--CANSCPVGAISFGFMDAKIDNELCYQCGNCLFTCPVDAIE 71

Query: 57 PDTE 60
              
Sbjct: 72 NIEP 75



 Score = 38.4 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +CILC    C +VC            +I    C  C  C+  C   +I   
Sbjct: 198 SCILC--GACAKVCDEQAIEIENYQFSIDDKRCTGCMSCQVVCFPQSIHVH 246


>gi|167569319|ref|ZP_02362193.1| ferredoxin [Burkholderia oklahomensis C6786]
          Length = 288

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|134045694|ref|YP_001097180.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132663319|gb|ABO34965.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 397

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V + C+ C    CV  CPV           +  D CI C +C   CP +AI 
Sbjct: 131 VLDECVGC--GVCVSECPVGAISIENEKAVVDKDSCIYCSICAQTCPWNAIF 180



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V ++ CI C   DC + CP D     E      P  C  CG+C+  CPVDAI    E   
Sbjct: 198 VDSDLCIGC--GDCTDKCPKDLIVLNEMIAVP-PKGCPACGLCKAACPVDAIDLVVEYAP 254

Query: 64  EL 65
             
Sbjct: 255 PK 256


>gi|41409307|ref|NP_962143.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118466656|ref|YP_883193.1| NADH dehydrogenase subunit I [Mycobacterium avium 104]
 gi|254776463|ref|ZP_05217979.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|81700407|sp|Q73V07|NUOI2_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|156633525|sp|A0QJV5|NUOI_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|41398127|gb|AAS05757.1| NuoI_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167943|gb|ABK68840.1| NADH-quinone oxidoreductase chain 1 [Mycobacterium avium 104]
          Length = 181

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCVEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|242281209|ref|YP_002993338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124103|gb|ACS81799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 139

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEP 61
            V + C+ C    C EVCP       +    +   +  CI CG C   CPVDAI  D + 
Sbjct: 49  FVAKVCMACSPAPCAEVCPTGAMRGRKKGGGVIHKKDLCIRCGKCAEACPVDAIYLDLKD 108

Query: 62  GL 63
             
Sbjct: 109 RP 110



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            + CI C    C E CPVD  Y         P  CI CG C   CP + ++         
Sbjct: 84  KDLCIRC--GKCAEACPVDAIYLDLKD---RPYVCIHCGRCVEFCPHECLEMVESDERRD 138


>gi|224539098|ref|ZP_03679637.1| hypothetical protein BACCELL_03999 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519288|gb|EEF88393.1| hypothetical protein BACCELL_03999 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 369

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C    C   CP     +G+    I  ++CI C  C   C   A   DT 
Sbjct: 297 VNAELCTHC--GVCAVHCPSGAILKGDECNTI-AEKCIKCCACVKGCSFKARTYDTP 350


>gi|189426396|ref|YP_001953573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189422655|gb|ACD97053.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 250

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C  VCP    Y+ +    + +   +CI C  C+  CP +A   + 
Sbjct: 123 CNQCNLPQCTRVCPTKATYKDKTTGIVLMDIKKCIGCLTCQEGCPYNARYFNE 175


>gi|187933514|ref|YP_001887097.1| anaerobic sulfite reductase subunit C [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721667|gb|ACD22888.1| anaerobic sulfite reductase subunit C [Clostridium botulinum B str.
           Eklund 17B]
          Length = 285

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V + C+ C    CV+ C        +  +  + D C+DCG C   C + A
Sbjct: 162 FVLDKCVGC--GLCVKACRQKALEVVDKKIVYNKDLCVDCGGCVRACKLGA 210


>gi|104779570|ref|YP_606068.1| ferredoxin 4Fe-4S [Pseudomonas entomophila L48]
 gi|95108557|emb|CAK13251.1| Ferredoxin 4Fe-4S [Pseudomonas entomophila L48]
          Length = 83

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T++CI C    C   CP     +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCD--VCEPECPNAAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 IPLD-EAHPETEDELMAKY 76


>gi|54309192|ref|YP_130212.1| putative pyruvate formate lyase activating enzyme [Photobacterium
           profundum SS9]
 gi|46913624|emb|CAG20410.1| Hypothetical pyruvate formate lyase activating enzyme
           [Photobacterium profundum SS9]
          Length = 318

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           + C  C   DCV  CP +      + +      C  C  C   CP  
Sbjct: 75  DMCNHC--GDCVATCPTNALSFISSKVIWDASLCSHCDNCLAVCPKQ 119


>gi|130071|sp|P13629|PHFL_DESVO RecName: Full=Periplasmic [Fe] hydrogenase large subunit;
          AltName: Full=Fe hydrogenlyase
 gi|145099|gb|AAA23373.1| [Fe]-hydrogenase alpha subunit [Desulfovibrio vulgaris]
          Length = 421

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIK 56
          +    CI C    C + CP    +         P E  CI+CG C   CPV AI 
Sbjct: 30 IDESKCIGCD--SCQQYCPTGAIFGDTGDAHKIPHEELCINCGQCLTHCPVGAIY 82


>gi|87118384|ref|ZP_01074283.1| electron transport complex protein RnfB [Marinomonas sp. MED121]
 gi|86166018|gb|EAQ67284.1| electron transport complex protein RnfB [Marinomonas sp. MED121]
          Length = 198

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 107 AVIREDECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVEPCPVDCIDM 161



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           M  V+++ C  C    CVE CPVDC    E  + 
Sbjct: 136 MHTVISDECTGCDL--CVEPCPVDCIDMVEVAVT 167


>gi|332878640|ref|ZP_08446359.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332683415|gb|EGJ56293.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 191

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPV 52
           C+ C    C  VCP D   + E  +       +CI C  C   CP 
Sbjct: 60  CMHCDDPICANVCPADAIVKDEYGIVHSADVSKCIGCANCVLSCPF 105


>gi|332526726|ref|ZP_08402828.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax
           benzoatilyticus JA2]
 gi|332111129|gb|EGJ11161.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax
           benzoatilyticus JA2]
          Length = 219

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V    CI C  T C++ CPVDC     +    +    C  CG+C P CPVD I  
Sbjct: 78  AVVDESWCIGC--TLCLKACPVDCIVGANKRMHTVIDALCTGCGLCLPACPVDCITM 132


>gi|317013056|gb|ADU83664.1| NADH dehydrogenase subunit I [Helicobacter pylori Lithuania75]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|317009952|gb|ADU80532.1| NADH dehydrogenase subunit I [Helicobacter pylori India7]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|308274238|emb|CBX30837.1| hypothetical protein N47_E43490 [uncultured Desulfobacterium sp.]
          Length = 949

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    CV++CP       E        +++   C  CG+C   C   AI        
Sbjct: 883 CSGC--GVCVKICPYSALSFIEKGPFTGRASVNQILCKGCGLCVASCRSGAINLKGFGTD 940

Query: 64  ELWLKINS 71
           ++   IN 
Sbjct: 941 QIMAMINE 948



 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 25/87 (28%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECIDC- 43
           YV    C+ C    C + CP                  V          AI P+ C+   
Sbjct: 43  YVDMNKCLAC--GLCAQKCPKKVDNEYDEGLSKRKAIYVKYAQAVPLKYAIDPNNCVYFE 100

Query: 44  ----GVCEPECPVDAIKPDTEPGLELW 66
                 CE  CP  AI  D +    ++
Sbjct: 101 KGKGRACEKFCPSKAINFDDKEKDLIF 127


>gi|284161887|ref|YP_003400510.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           profundus DSM 5631]
 gi|284011884|gb|ADB57837.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           profundus DSM 5631]
          Length = 734

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 3   YVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+   C  C    C  VCP +     E F  I P  C  CG+C   CP  AI
Sbjct: 534 YSITDIEKCSKC--GLCYAVCPHNAIEFDEVF-KIDPAFCKGCGLCYATCPSRAI 585



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 19/73 (26%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA----IHPDE-------------CIDCGV 45
           Y+  + C+ C    C EVCP++     +  +     I  D              C  CG 
Sbjct: 229 YIDPDKCVSC--GKCSEVCPIEVPNPFDFGMTKRKAIDKDFRLAMPDTYNIVEGCNRCGE 286

Query: 46  CEPECPVDAIKPD 58
           C   CP +AI  D
Sbjct: 287 CVKVCPTNAINLD 299


>gi|270261663|ref|ZP_06189936.1| transporter [Serratia odorifera 4Rx13]
 gi|270045147|gb|EFA18238.1| transporter [Serratia odorifera 4Rx13]
          Length = 190

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 108 AYIDEANCIGC--TKCIQACPVDAIVGATRAMHTVITDLCTGCDLCVAPCPTDCIEM 162


>gi|268589520|ref|ZP_06123741.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rettgeri DSM 1131]
 gi|291315189|gb|EFE55642.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rettgeri DSM 1131]
          Length = 204

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           +  ENCI C  T C++ CPVD           +  D C  C +C   CP D I
Sbjct: 112 IDEENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCI 162


>gi|226326078|ref|ZP_03801596.1| hypothetical protein COPCOM_03896 [Coprococcus comes ATCC 27758]
 gi|225205620|gb|EEG87974.1| hypothetical protein COPCOM_03896 [Coprococcus comes ATCC 27758]
          Length = 295

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E C+ C    C   C +D              ECI CG C   CP +AI    
Sbjct: 235 VDPEKCVNC--QKCSHACKMDVNVVDTP----DHPECIRCGACMKACPTNAICYHY 284


>gi|222445881|ref|ZP_03608396.1| hypothetical protein METSMIALI_01527 [Methanobrevibacter smithii
          DSM 2375]
 gi|222435446|gb|EEE42611.1| hypothetical protein METSMIALI_01527 [Methanobrevibacter smithii
          DSM 2375]
          Length = 167

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C++  CV++CP +              +CI CG+C   CP  AI
Sbjct: 44 CQHCENAPCVKICPTNAMTTDGVKTE----DCIGCGLCSIICPFGAI 86


>gi|242281199|ref|YP_002993328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124093|gb|ACS81789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 12/64 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    C   CP+D     +           F  I+ + C+ CGVC  +CP  A++ D
Sbjct: 294 CNGC--GKCARACPIDAITMHKENVPGAEKPRRFAEINKNICLGCGVCALKCPTGALQMD 351

Query: 59  TEPG 62
               
Sbjct: 352 KREQ 355


>gi|153810822|ref|ZP_01963490.1| hypothetical protein RUMOBE_01206 [Ruminococcus obeum ATCC 29174]
 gi|149833218|gb|EDM88300.1| hypothetical protein RUMOBE_01206 [Ruminococcus obeum ATCC 29174]
          Length = 263

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP       +    I  ++C +CG C+  CP   I
Sbjct: 218 CIGCKK--CEKTCPNGAITVTDFCAHIDYEKCTNCGACKEACPRHVI 262



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+      CV+ CP D  +       +  + C  CG C  +CP   I
Sbjct: 144 CMG--FGSCVKACPFDAIHIVNGVAVVDREACKACGKCIAKCPHHLI 188


>gi|48478325|ref|YP_024031.1| ferredoxin [Picrophilus torridus DSM 9790]
 gi|48430973|gb|AAT43838.1| ferredoxin [Picrophilus torridus DSM 9790]
          Length = 649

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAI-KPDTE 60
               C+ CK  DC   CPV       +F+         CI  G C   CP D I   D  
Sbjct: 573 DPSACLTCKTKDCATACPVGNHEMPGSFIKNGYYKDSRCIGIGDCLEACPNDNIFFYDVR 632

Query: 61  PGLELWLKINSEY 73
             L   +  N   
Sbjct: 633 QYLRKKITKNENL 645


>gi|163847693|ref|YP_001635737.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222525553|ref|YP_002570024.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus sp. Y-400-fl]
 gi|163668982|gb|ABY35348.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222449432|gb|ACM53698.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus sp. Y-400-fl]
          Length = 1040

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
            Y++   C  C+   C  VCPV    ++ E    +  + C+    C   CP  
Sbjct: 858 AYLMPMTCAHCEQAPCELVCPVAATVHDAEGINNMVYNRCVGTKYCSNNCPFK 910


>gi|308064046|gb|ADO05933.1| NADH dehydrogenase subunit I [Helicobacter pylori Sat464]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|315587159|gb|ADU41540.1| NADH-quinone oxidoreductase subunit I [Helicobacter pylori 35A]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|284162138|ref|YP_003400761.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
 gi|284012135|gb|ADB58088.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
          Length = 261

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +V +NC  C   +CV  CP +               C  C  C   C  +AI        
Sbjct: 166 IVKDNCNNC--GNCVSACPRNILRLNGKVEVTDILSCSMCRECVKVCEENAIDVVETDNY 223

Query: 64  ELWLK 68
              ++
Sbjct: 224 LFAVE 228


>gi|256027301|ref|ZP_05441135.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. D11]
 gi|289765276|ref|ZP_06524654.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. D11]
 gi|289716831|gb|EFD80843.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. D11]
          Length = 324

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A     +   
Sbjct: 172 DRCVAC--GACVKKCKKVSVEALKMENNKIVRDANKCIGCGECVINCPMSAWTRSPKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
           +L +     K N   A  W
Sbjct: 230 KLMIMGRTGKKNPRLAEDW 248


>gi|188528057|ref|YP_001910744.1| NADH dehydrogenase subunit I [Helicobacter pylori Shi470]
 gi|226737396|sp|B2UV32|NUOI_HELPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|188144297|gb|ACD48714.1| NADH dehydrogenase subunit I [Helicobacter pylori Shi470]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|167626176|ref|YP_001676470.1| cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           halifaxensis HAW-EB4]
 gi|167356198|gb|ABZ78811.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           halifaxensis HAW-EB4]
          Length = 473

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDTTMTRMGYEKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|23014022|ref|ZP_00053863.1| COG1145: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 376

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+E C       C   CP         E    L+  P  CIDCG+C   CP  A+  D
Sbjct: 253 VSEACNN--SGACAAHCPTQALQSWVGEAAEGLSFDPRSCIDCGLCVSACPGSALSFD 308



 Score = 33.8 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 11 LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C    C E CPV       +   +  + C+ CG C   CPV AI
Sbjct: 24 GCV--ACAEGCPVAAIEAMGDVPTV-SETCVGCGSCAVACPVGAI 65


>gi|26991800|ref|NP_747225.1| ferredoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|148550200|ref|YP_001270302.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas putida F1]
 gi|24986912|gb|AAN70689.1|AE016712_7 ferredoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|148514258|gb|ABQ81118.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pseudomonas putida F1]
 gi|313501100|gb|ADR62466.1| Ferredoxin, 4Fe-4S [Pseudomonas putida BIRD-1]
          Length = 83

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCD--VCEPECPNEAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 IPLD-EAHPETEEQLMAKY 76


>gi|22125976|ref|NP_669399.1| electron transport complex protein RnfB [Yersinia pestis KIM 10]
 gi|45441843|ref|NP_993382.1| electron transport complex protein RnfB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807599|ref|YP_651515.1| electron transport complex protein RnfB [Yersinia pestis Antiqua]
 gi|108811875|ref|YP_647642.1| electron transport complex protein RnfB [Yersinia pestis Nepal516]
 gi|149365836|ref|ZP_01887871.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|162420711|ref|YP_001606697.1| electron transport complex protein RnfB [Yersinia pestis Angola]
 gi|165927379|ref|ZP_02223211.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938163|ref|ZP_02226722.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010629|ref|ZP_02231527.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166210969|ref|ZP_02237004.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400916|ref|ZP_02306422.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420206|ref|ZP_02311959.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167425000|ref|ZP_02316753.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|218929341|ref|YP_002347216.1| electron transport complex protein RnfB [Yersinia pestis CO92]
 gi|229894931|ref|ZP_04510109.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|229897673|ref|ZP_04512829.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898319|ref|ZP_04513466.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902178|ref|ZP_04517299.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|270490650|ref|ZP_06207724.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis KIM D27]
 gi|294503722|ref|YP_003567784.1| electron transport complex protein RnfB [Yersinia pestis Z176003]
 gi|24638185|sp|Q8ZEC9|RNFB_YERPE RecName: Full=Electron transport complex protein rnfB
 gi|122979617|sp|Q1C7K2|RNFB_YERPA RecName: Full=Electron transport complex protein rnfB
 gi|123073406|sp|Q1CIY8|RNFB_YERPN RecName: Full=Electron transport complex protein rnfB
 gi|226735436|sp|A9R8U7|RNFB_YERPG RecName: Full=Electron transport complex protein rnfB
 gi|21958920|gb|AAM85650.1|AE013811_3 hypothetical protein y2086 [Yersinia pestis KIM 10]
 gi|45436705|gb|AAS62259.1| putative iron-sulfur protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775523|gb|ABG18042.1| iron-sulfur protein [Yersinia pestis Nepal516]
 gi|108779512|gb|ABG13570.1| putative iron-sulfur protein [Yersinia pestis Antiqua]
 gi|115347952|emb|CAL20874.1| putative iron-sulfur protein [Yersinia pestis CO92]
 gi|149292249|gb|EDM42323.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|162353526|gb|ABX87474.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis Angola]
 gi|165913824|gb|EDR32442.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165920645|gb|EDR37893.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990331|gb|EDR42632.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166208149|gb|EDR52629.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961901|gb|EDR57922.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049769|gb|EDR61177.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056187|gb|EDR65965.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229681074|gb|EEO77169.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|229688609|gb|EEO80678.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694010|gb|EEO84059.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702026|gb|EEO90047.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|262362158|gb|ACY58879.1| electron transport complex protein RnfB [Yersinia pestis D106004]
 gi|262365491|gb|ACY62048.1| electron transport complex protein RnfB [Yersinia pestis D182038]
 gi|270339154|gb|EFA49931.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis KIM D27]
 gi|294354181|gb|ADE64522.1| electron transport complex protein RnfB [Yersinia pestis Z176003]
 gi|320014910|gb|ADV98481.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 188

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIEM 164


>gi|330876064|gb|EGH10213.1| FixG-like protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 470

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C  T CV+VCP          +     ECI C  C   C     K D   GL  +
Sbjct: 270 CIDC--TLCVQVCPTGIDIRDGLQV-----ECIGCAACVDACNTVMDKMDYPRGLIRY 320


>gi|315126995|ref|YP_004068998.1| electron transport complex protein RnfB [Pseudoalteromonas sp.
           SM9913]
 gi|315015509|gb|ADT68847.1| electron transport complex protein RnfB [Pseudoalteromonas sp.
           SM9913]
          Length = 184

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD           +  DEC  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCIDM 161


>gi|284049221|ref|YP_003399560.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953442|gb|ADB48245.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 418

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           K  DCV+VC  D  +   + + I PD+C+ C  C   C 
Sbjct: 63  KQADCVKVCQWDAMHPSADGVQIDPDKCVGCQACVDACK 101


>gi|317152772|ref|YP_004120820.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943023|gb|ADU62074.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 308

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C+ C    C E C             I    C+ CGVC   C  DA+
Sbjct: 242 VDQETCVGC--GLCAEKCQFKAIGFRGGMAFIRAKRCMGCGVCVEACSKDAL 291


>gi|303242026|ref|ZP_07328518.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2]
 gi|302590444|gb|EFL60200.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2]
          Length = 290

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  + CI C    C + C  D   +    +   P +C  CG C   CP  AI  +   
Sbjct: 61  AVIDPDLCIKC--GICKDTCRFDSINDEFKMI---PMKCEGCGACVLACPQKAIHLEEVK 115

Query: 62  GLELWL 67
             EL++
Sbjct: 116 TGELYI 121


>gi|288559597|ref|YP_003423083.1| tungsten formylmethanofuran dehydrogenase subunit H FwdH
           [Methanobrevibacter ruminantium M1]
 gi|288542307|gb|ADC46191.1| tungsten formylmethanofuran dehydrogenase subunit H FwdH
           [Methanobrevibacter ruminantium M1]
          Length = 149

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + CI C    CV++C V           I+P  C  C +C  +CP ++I
Sbjct: 96  IDDGCIGC--GLCVDLCEVKSISLDSLKAKINPRYCCGCLMCVEDCPTNSI 144


>gi|288802958|ref|ZP_06408394.1| conserved hypothetical protein [Prevotella melaninogenica D18]
 gi|302345157|ref|YP_003813510.1| ferredoxin [Prevotella melaninogenica ATCC 25845]
 gi|288334475|gb|EFC72914.1| conserved hypothetical protein [Prevotella melaninogenica D18]
 gi|302149382|gb|ADK95644.1| ferredoxin [Prevotella melaninogenica ATCC 25845]
          Length = 55

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV+   EG+    I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIAC--GTCIDECPVEAISEGD-IYKIDADACTECGTCASVCPSEAI 52


>gi|229584070|ref|YP_002842571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|228019119|gb|ACP54526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 228

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C++  C  VCP           + +   +C+ C  C   CP  A    T   
Sbjct: 72  FVPRLCMQCENPPCYYVCPTGATQIVVGGIVVVDEYKCMGCLYCVEACPYGARYFYTYED 131

Query: 63  LELWLK 68
           +E   +
Sbjct: 132 IEKSKE 137


>gi|147679181|ref|YP_001213396.1| indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [Pelotomaculum thermopropionicum SI]
 gi|146275278|dbj|BAF61027.1| indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [Pelotomaculum thermopropionicum SI]
          Length = 586

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 2   TYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             V+ E C  CK   C+ + CP       +   A+ P  C  C +C   C   A+    E
Sbjct: 528 AVVLAEKCRGCK--VCLRLGCP--AISMKDGRAAVDPIACTGCELCVQVCREGALLKGVE 583


>gi|119873473|ref|YP_931480.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum islandicum DSM 4184]
 gi|119674881|gb|ABL89137.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum islandicum DSM 4184]
          Length = 129

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + C+ C    CV  CP            +    C  CG+C   CP  AIK  T   L
Sbjct: 10 IDGDRCVKCNL--CVRACPTSALRP----PRVLYSRCTGCGLCTYTCPRGAIKMATRLSL 63

Query: 64 ELWLKI 69
            ++ I
Sbjct: 64 AAYVFI 69


>gi|119897731|ref|YP_932944.1| electron transport complex protein RnfB [Azoarcus sp. BH72]
 gi|166225080|sp|A1K5F2|RNFB_AZOSB RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|119670144|emb|CAL94057.1| probable electron transport complex protein RnfB [Azoarcus sp.
           BH72]
          Length = 183

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y+    CI C  T C++ CPVD      +    +    C  C +C   CPVD I  +
Sbjct: 106 AYIDENVCIGC--TLCLQACPVDAIVGAAKQMHTVVDPLCTGCELCVAPCPVDCIYME 161


>gi|146303119|ref|YP_001190435.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera sedula DSM 5348]
 gi|145701369|gb|ABP94511.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Metallosphaera sedula DSM 5348]
          Length = 87

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C  C    CV+VCP   +    + + +H + C++CG     CP  AI      G   +
Sbjct: 25 EVCRTCAEKPCVKVCPAGTYERSGDVIEVHYERCLECGAALVACPFGAISFKFPEGGVSF 84


>gi|254976913|ref|ZP_05273385.1| hydrogenase [Clostridium difficile QCD-66c26]
 gi|255094299|ref|ZP_05323777.1| hydrogenase [Clostridium difficile CIP 107932]
 gi|255102481|ref|ZP_05331458.1| hydrogenase [Clostridium difficile QCD-63q42]
 gi|255308386|ref|ZP_05352557.1| hydrogenase [Clostridium difficile ATCC 43255]
 gi|255316053|ref|ZP_05357636.1| hydrogenase [Clostridium difficile QCD-76w55]
 gi|255518710|ref|ZP_05386386.1| hydrogenase [Clostridium difficile QCD-97b34]
 gi|255651832|ref|ZP_05398734.1| hydrogenase [Clostridium difficile QCD-37x79]
 gi|255657272|ref|ZP_05402681.1| hydrogenase [Clostridium difficile QCD-23m63]
 gi|260684858|ref|YP_003216143.1| hydrogenase [Clostridium difficile CD196]
 gi|260688516|ref|YP_003219650.1| hydrogenase [Clostridium difficile R20291]
 gi|296451875|ref|ZP_06893593.1| ferredoxin hydrogenase [Clostridium difficile NAP08]
 gi|296879729|ref|ZP_06903704.1| ferredoxin hydrogenase [Clostridium difficile NAP07]
 gi|306521619|ref|ZP_07407966.1| hydrogenase [Clostridium difficile QCD-32g58]
 gi|260211021|emb|CBA66340.1| hydrogenase [Clostridium difficile CD196]
 gi|260214533|emb|CBE07055.1| hydrogenase [Clostridium difficile R20291]
 gi|296259292|gb|EFH06169.1| ferredoxin hydrogenase [Clostridium difficile NAP08]
 gi|296429318|gb|EFH15190.1| ferredoxin hydrogenase [Clostridium difficile NAP07]
          Length = 458

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
          +  + C  C+   C +VCPV+     E     I+ D C+ CG C   C   A   D 
Sbjct: 5  IDKDLCTGCRE--CSKVCPVNAIEGEEGKPQEINLDRCVMCGQCVQTCKSYASVIDE 59


>gi|148264538|ref|YP_001231244.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146398038|gb|ABQ26671.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 149

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           NC  C   DC+  C      + EN +  I  ++C+ C  C   CP  A++ +        
Sbjct: 61  NCRHCDEPDCLRACISGAIQKQENGVVLIDTEQCVGCWSCVMACPYGAVQRN-------- 112

Query: 67  LKINSEYATQWPNITTKKES 86
             +N + A +      ++  
Sbjct: 113 --LNKKKANKCDLCPERENP 130


>gi|332296571|ref|YP_004438494.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179674|gb|AEE15363.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 168

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + V   C  C+   CV  CP     +   +  + ++ D C+ C  C   CP    + ++E
Sbjct: 53  HFVFMPCFHCEKPWCVYACPTGAMTKRAKDGIVYVNQDLCVGCKNCITACPWGVPQWNSE 112


>gi|308062552|gb|ADO04440.1| NADH dehydrogenase subunit I [Helicobacter pylori Cuz20]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|307266505|ref|ZP_07548039.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918485|gb|EFN48725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 149

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV+ C      +  +   +    D+C+ C  C   C   AI  D
Sbjct: 60  CRHCDDAPCVKSCITGAMQKDPSTGVVTCDTDKCVGCWTCVLVCEFGAIIRD 111


>gi|269793046|ref|YP_003317950.1| glycyl-radical enzyme activating protein family
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100681|gb|ACZ19668.1| glycyl-radical enzyme activating protein family
          [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 301

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C   CP      GE+ L +    C+ CG+C   CP DA+
Sbjct: 52 PERCVGC--GRCALACPAGAISYGEH-LRLDRSRCVRCGMCAQACPADAM 98


>gi|298530780|ref|ZP_07018182.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510154|gb|EFI34058.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 171

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C+   CV  CP    Y+ +    + +  + C+ C  C   CP D  + D 
Sbjct: 58  PCFHCETPWCVHACPTGALYKRDKDGIVMVQEELCVGCKACIMSCPWDIPQWDE 111


>gi|167622633|ref|YP_001672927.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352655|gb|ABZ75268.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 213

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +V E C  C    C+  CP       E      +  + CI CG C   CP   I  D
Sbjct: 110 IVPETCRQCN--VCMAACPQQAISIDEATGARVVDEELCIGCGYCAENCPQQVITID 164


>gi|146281595|ref|YP_001171748.1| electron transport complex protein RnfB [Pseudomonas stutzeri
           A1501]
 gi|189043386|sp|A4VIV5|RNFB_PSEU5 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|145569800|gb|ABP78906.1| electron transport complex, B subunit [Pseudomonas stutzeri A1501]
 gi|327479773|gb|AEA83083.1| electron transport complex protein RnfB [Pseudomonas stutzeri DSM
           4166]
          Length = 191

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+    CI C  T C++ CPVD           +   EC  C +C   CPVD I     
Sbjct: 107 AYIREAECIGC--TKCIQACPVDAIVGAARQMHTVIISECTGCDLCVEPCPVDCIDMIEV 164

Query: 61  PGLELWLKINSEYA 74
                  K N   A
Sbjct: 165 GSNLQSWKWNRPLA 178


>gi|121533839|ref|ZP_01665666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
 gi|121307830|gb|EAX48745.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
          Length = 55

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +TE C+ C    C   CPV    EG     I  +EC++CG C   CPV AI
Sbjct: 1  MAYKITEECVAC--GSCAATCPVGAIKEGNPTYVI-TEECVECGACAAVCPVGAI 52


>gi|116075769|ref|ZP_01473028.1| hypothetical protein RS9916_39926 [Synechococcus sp. RS9916]
 gi|116067084|gb|EAU72839.1| hypothetical protein RS9916_39926 [Synechococcus sp. RS9916]
          Length = 352

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYAT 75
            C+ VCP +      + + +    C  CG C P CP+  I        +    + S  AT
Sbjct: 106 PCMRVCPAEAIPSLPSTVGVDAARCYGCGRCLPACPLGLIVAH--DHQQSREDLGSLLAT 163

Query: 76  QWPNITTKKESLPSAAKM 93
             P+      +     + 
Sbjct: 164 LTPDAVEVHTAPGRGLEF 181


>gi|29347004|ref|NP_810507.1| putative ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338902|gb|AAO76701.1| putative ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
          Length = 319

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   CP     +G+     + ++CI C  C   C   A K DT 
Sbjct: 252 CTHC--GICAARCPAGAITKGDELNT-NAEKCIKCCACVKACANKARKYDTP 300


>gi|20093900|ref|NP_613747.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886841|gb|AAM01677.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 192

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--------------ENFLAIHPDECIDCGVCEPECP 51
            E CI C    CVEVCP      G                 + +  D C+ CG CE  CP
Sbjct: 78  KERCIRC--GLCVEVCPTGAIEMGTLHEEVEERVQPPKPARIVVDSDLCVGCGKCESACP 135

Query: 52  VDAIKPDTEPGLEL 65
            DAI  +    ++ 
Sbjct: 136 SDAITVEETAEVDE 149



 Score = 40.4 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVD-------CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V  + CILC    C + CPV+            E    +H + CI CG+C   CP  AI+
Sbjct: 40 VDLDRCILC--GACADACPVEGRDGCPPAMEMSEEGPVLHKERCIRCGLCVEVCPTGAIE 97

Query: 57 P 57
           
Sbjct: 98 M 98



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V ++ C+ C    C   CP D     E    +  + C+ C VC   CPV           
Sbjct: 119 VDSDLCVGC--GKCESACPSDAITVEET-AEVDEERCVLCEVCLEVCPVAGAIKLVPTDT 175

Query: 64  ELWLKINSEYAT 75
           +  +K   EY  
Sbjct: 176 DELVKRWKEYLE 187


>gi|320538846|ref|ZP_08038522.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson]
 gi|320031006|gb|EFW13009.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson]
          Length = 190

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 108 AYIDEANCIGC--TKCIQACPVDAIVGATGAMHTVIADLCTGCDLCVAPCPTDCIEM 162


>gi|284165623|ref|YP_003403902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284015278|gb|ADB61229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 224

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCP +   + ++    +H D C+ C  C   CP  A
Sbjct: 92  CYHCENAPCVSVCPTNALQKEDDGFVSVHEDLCVGCQYCLSGCPFGA 138


>gi|262165248|ref|ZP_06032985.1| electron transport complex protein RnfB [Vibrio mimicus VM223]
 gi|262024964|gb|EEY43632.1| electron transport complex protein RnfB [Vibrio mimicus VM223]
          Length = 195

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G      +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|260913116|ref|ZP_05919598.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Pasteurella dagmatis ATCC 43325]
 gi|260632703|gb|EEX50872.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Pasteurella dagmatis ATCC 43325]
          Length = 226

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           +C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 94  SCQHCSNAPCVHVCPTGASFVDKETGIVDVHKDLCVGCQYCIAVCPYR 141


>gi|260769053|ref|ZP_05877987.1| electron transport complex protein RnfB [Vibrio furnissii CIP
           102972]
 gi|260617083|gb|EEX42268.1| electron transport complex protein RnfB [Vibrio furnissii CIP
           102972]
 gi|315180794|gb|ADT87708.1| electron transport complex protein RnfB [Vibrio furnissii NCTC
           11218]
          Length = 199

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G      +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|219852244|ref|YP_002466676.1| nitroreductase [Methanosphaerula palustris E1-9c]
 gi|219546503|gb|ACL16953.1| nitroreductase [Methanosphaerula palustris E1-9c]
          Length = 272

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
          M+ +V +  NC  C    C  +CP     E ++  +I   +   CI CG CE  CP  A+
Sbjct: 1  MSTIVIDETNCTHCS--TCATICPSGIIEETDSIPSIRPENEGSCIACGQCEATCPTGAL 58

Query: 56 KPDTEPGL 63
          K     G 
Sbjct: 59 KVQDPDGQ 66


>gi|83409915|emb|CAI64336.1| heterodisulfide reductase like protein, subunit A [uncultured
            archaeon]
          Length = 1024

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 14/80 (17%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFLA------------IHPDECIDCGVCEPECP 51
            V  E CI C    C  VCP       E  +             I+P  C  CG C  ECP
Sbjct: 942  VDPELCIGC--GRCTLVCPYKAPELKEVTVETEEIVYITKKSEINPAVCKGCGSCAAECP 999

Query: 52   VDAIKPDTEPGLELWLKINS 71
              AI        ++   I +
Sbjct: 1000 TGAITARHFTTPQIMAVIKA 1019



 Score = 41.1 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 28/92 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID- 42
           TYV  + C  C+   CV  CPV    E                        I  + C+  
Sbjct: 116 TYVDYDKCTACEL--CVSKCPVKVPDEYNEGQNNRKAIYLAFPQAVPRVFTIDAEHCLYL 173

Query: 43  ----CGVCEPECPVDAIKPDTEPGLELWLKIN 70
               CG C+  C  DAI  +        + IN
Sbjct: 174 TKGKCGNCQKACENDAINFEDTD---KEIDIN 202


>gi|115352917|ref|YP_774756.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia ambifaria AMMD]
 gi|115282905|gb|ABI88422.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia ambifaria AMMD]
          Length = 88

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MSLMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHDESHAQLMEKY 76


>gi|332982855|ref|YP_004464296.1| hypothetical protein Mahau_2307 [Mahella australiensis 50-1 BON]
 gi|332700533|gb|AEE97474.1| protein of unknown function DUF362 [Mahella australiensis 50-1 BON]
          Length = 377

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C   DC + CP       +    +  + CI C  C+  CP  A+
Sbjct: 322 DACKGC--GDCADNCPPRAIKMVDKRPRVDLNICIRCFCCQELCPYKAV 368


>gi|325921027|ref|ZP_08182908.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325548476|gb|EGD19449.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 143

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I+  T
Sbjct: 85  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIELHT 141


>gi|323698952|ref|ZP_08110864.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323458884|gb|EGB14749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 351

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C   C V  F +  N         C+ C  C   CP      + +  
Sbjct: 105 CNHCLEPACASACFVKAFKKQPNGAVTYDASVCVGCRYCMVACPFSIPAYEYDEP 159


>gi|268678727|ref|YP_003303158.1| cytochrome C oxidase accessory protein CcoG [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616758|gb|ACZ11123.1| cytochrome c oxidase accessory protein CcoG [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 452

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           VT++C  C+   CV VCP          L     ECI+C  C   C 
Sbjct: 239 VTDDCTGCE--ACVRVCPTHIDIRKGMQL-----ECINCLECADACT 278


>gi|258515969|ref|YP_003192191.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779674|gb|ACV63568.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 265

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +++ C+ C    C  VCPV       +   I  ++CI C  C   CP +A
Sbjct: 190 ISDKCLQC--GFCARVCPVGAIDLENS-ALIDKEKCILCCACIKGCPENA 236


>gi|209964581|ref|YP_002297496.1| nitrogen fixation protein fixG [Rhodospirillum centenum SW]
 gi|209958047|gb|ACI98683.1| nitrogen fixation protein fixG [Rhodospirillum centenum SW]
          Length = 496

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 7/80 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C+  CP          L     ECI CG+C   C     K      L  +  
Sbjct: 276 CIDC--GQCIAACPTGIDIRDGLQL-----ECIGCGLCIDACNDIMTKVGRPLNLVTFDT 328

Query: 69  INSEYATQWPNITTKKESLP 88
            N++ A      T  +   P
Sbjct: 329 ENNQEARSKGLPTKFRPVRP 348


>gi|164686169|ref|ZP_02210199.1| hypothetical protein CLOBAR_02607 [Clostridium bartlettii DSM
           16795]
 gi|164601771|gb|EDQ95236.1| hypothetical protein CLOBAR_02607 [Clostridium bartlettii DSM
           16795]
          Length = 322

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C            N +     +CI CG C   CP  A   D +   
Sbjct: 172 DRCVNC--QACVKKCKRLSTGALSVENNKIVRDAQKCIGCGECVLNCPTGAWARDEKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
            L +     K N   A  W
Sbjct: 230 RLAIMGRSGKKNPRLAEDW 248


>gi|126664787|ref|ZP_01735771.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17]
 gi|126631113|gb|EBA01727.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17]
          Length = 659

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  T C++VCP +  +   + + I+ D C  CG C   CP  A+  +  P  
Sbjct: 290 GC--TRCLDVCPTEAIFSAGDHVEINSDICAGCGSCAAVCPTSAVTMNETPFE 340



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++ C LC    CV +CP      +     +    + C+ CGVCE  CP  AI
Sbjct: 510 INSDKCTLCL--ACVSLCPTGALGDHPDRPEVQFTENACVQCGVCESTCPETAI 561


>gi|308232352|ref|ZP_07664062.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu001]
 gi|308370163|ref|ZP_07666876.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu002]
 gi|308371248|ref|ZP_07667119.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu003]
 gi|308372440|ref|ZP_07667380.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu004]
 gi|308373654|ref|ZP_07667623.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu005]
 gi|308374789|ref|ZP_07667864.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu006]
 gi|308376003|ref|ZP_07668165.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu007]
 gi|308377236|ref|ZP_07668465.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu008]
 gi|308378204|ref|ZP_07668688.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu009]
 gi|308379423|ref|ZP_07668963.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu010]
 gi|308380586|ref|ZP_07669224.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu011]
 gi|308406063|ref|ZP_07669499.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu012]
 gi|308214182|gb|EFO73581.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu001]
 gi|308324956|gb|EFP13807.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu002]
 gi|308329373|gb|EFP18224.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu003]
 gi|308333202|gb|EFP22053.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu004]
 gi|308336692|gb|EFP25543.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu005]
 gi|308340533|gb|EFP29384.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu006]
 gi|308344472|gb|EFP33323.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu007]
 gi|308348468|gb|EFP37319.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu008]
 gi|308353098|gb|EFP41949.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu009]
 gi|308357071|gb|EFP45922.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu010]
 gi|308361026|gb|EFP49877.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu011]
 gi|308364634|gb|EFP53485.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
          SUMu012]
 gi|323718242|gb|EGB27422.1| NADH dehydrogenase I subunit I nuoI [Mycobacterium tuberculosis
          CDC1551A]
          Length = 167

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
          E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 35 EKCIGCEL--CAWACPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEAC 92

Query: 51 PVDAIKP 57
          P  A+  
Sbjct: 93 PTRALTM 99


>gi|28869202|ref|NP_791821.1| FixG-like protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967521|ref|ZP_03395669.1| FixG-related protein [Pseudomonas syringae pv. tomato T1]
 gi|301386484|ref|ZP_07234902.1| FixG-related protein [Pseudomonas syringae pv. tomato Max13]
 gi|302062816|ref|ZP_07254357.1| FixG-related protein [Pseudomonas syringae pv. tomato K40]
 gi|302131315|ref|ZP_07257305.1| FixG-related protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852442|gb|AAO55516.1| FixG-related protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927822|gb|EEB61369.1| FixG-related protein [Pseudomonas syringae pv. tomato T1]
          Length = 470

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C  T CV+VCP          +     ECI C  C   C     K D   GL  +
Sbjct: 270 CIDC--TLCVQVCPTGIDIRDGLQV-----ECIGCAACVDACDTVMDKMDYPRGLIRY 320


>gi|150018350|ref|YP_001310604.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium beijerinckii NCIMB 8052]
 gi|149904815|gb|ABR35648.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Clostridium beijerinckii NCIMB 8052]
          Length = 274

 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V +E C  C    CV++C        +    +  D CI+CG C   CP  A+
Sbjct: 7  VNSEKCTKC--GLCVKIC-RGTLVMSDLGPKVDRDLCIECGHCVAVCPNGAL 55


>gi|317014660|gb|ADU82096.1| NADH dehydrogenase subunit I [Helicobacter pylori Gambia94/24]
          Length = 219

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|307297315|ref|ZP_07577121.1| iron-sulfur cluster-binding protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916575|gb|EFN46957.1| iron-sulfur cluster-binding protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 357

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C+   C   CP           AI  ++CI C VC   CP DAI
Sbjct: 302 IDRERCRSCR--VCENACPAKAIDINRF--AIDYNKCITCYVCHELCPEDAI 349


>gi|284049074|ref|YP_003399413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
 gi|283953295|gb|ADB48098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
          Length = 276

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C    C +VCP+             P  CI C  C   CP  A   D    L    
Sbjct: 206 RCDHC--GKCAKVCPMGSINPDNTDEV--PGICIKCQACIQYCPQGAKYFDDPRFLSHKA 261

Query: 68  KINSEY 73
            +   Y
Sbjct: 262 MLEKSY 267


>gi|284048145|ref|YP_003398484.1| nitroreductase [Acidaminococcus fermentans DSM 20731]
 gi|283952366|gb|ADB47169.1| nitroreductase [Acidaminococcus fermentans DSM 20731]
          Length = 270

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V    C+ C    C +VCP       EN    I+   C+ CG C   CP  A+     P 
Sbjct: 7  VDQNKCVKC--GICSKVCPSCIIEMEENGPVCINDMSCMSCGHCVSVCPTGALDNSRCPQ 64

Query: 63 LE 64
           E
Sbjct: 65 AE 66


>gi|326317529|ref|YP_004235201.1| RnfABCDGE type electron transport complex subunit B [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374365|gb|ADX46634.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 244

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +    CI C  T C++ CP D      +    +    C  C +C P CPVD I  +
Sbjct: 87  AVIDELACIGC--TLCIKACPTDAILGTHKRMHTVIEAHCTGCELCIPVCPVDCIAME 142


>gi|224368798|ref|YP_002602959.1| FAD-dependent oxidoreductase (4Fe-4S ferredoxin cluster binding
           protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691514|gb|ACN14797.1| FAD-dependent oxidoreductase (4Fe-4S ferredoxin cluster binding
           protein) [Desulfobacterium autotrophicum HRM2]
          Length = 689

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 10  ILCK-HTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           I C     CV+ C       G ++   + P++C  CG CE  CP   I
Sbjct: 136 IGCLGLGTCVKACLFGALTMGKDSLPKVDPEKCTGCGACERACPKHII 183



 Score = 33.8 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 15/67 (22%), Gaps = 4/67 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C   CP            I  +   D   C   C             
Sbjct: 163 VDPEKCTGC--GACERACPKHIIRLTSVTRRIISEYTED--ECVTPCQRACPTGIDIREY 218

Query: 64  ELWLKIN 70
              ++ N
Sbjct: 219 VRLIRHN 225


>gi|254472883|ref|ZP_05086282.1| radical activating enzyme [Pseudovibrio sp. JE062]
 gi|211958347|gb|EEA93548.1| radical activating enzyme [Pseudovibrio sp. JE062]
          Length = 272

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C   DCV  CP       +  +   P  C  C  C   CP++A
Sbjct: 31 CNDC--GDCVPECPTGALTIVQGKVVHDPSICDQCDKCLDVCPINA 74


>gi|153940224|ref|YP_001389380.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|152936120|gb|ABS41618.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|295317487|gb|ADF97864.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           230613]
          Length = 387

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP     +D   +G+  +   +  +CI C  C+  CP  AI
Sbjct: 317 IKEKCIGCN--RCAEVCPEKPYVIDMIKKGDKKIPVWNMKKCIRCFCCQELCPKGAI 371


>gi|88602686|ref|YP_502864.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188148|gb|ABD41145.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 257

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           M    T+ CI CK   C +VCPV   Y        +  EC  CG C   CP
Sbjct: 203 MRLTRTDACISCK--QCEKVCPVGEAYADS-----NKSECFLCGRCTQVCP 246


>gi|50426955|ref|XP_462080.1| DEHA2G12518p [Debaryomyces hansenii CBS767]
 gi|49657750|emb|CAG90566.1| DEHA2G12518p [Debaryomyces hansenii]
          Length = 607

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    CK  +C + CPV                  I    CI CG+C  +CP DA
Sbjct: 11 VSTDRCKPKKCK-QECRKACPVVKTGKLCIEVTPTSKIAFISETLCIGCGICVKKCPFDA 69

Query: 55 IK 56
          I 
Sbjct: 70 IN 71


>gi|20089906|ref|NP_615981.1| hypothetical protein MA1031 [Methanosarcina acetivorans C2A]
 gi|19914861|gb|AAM04461.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 377

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            ++ T NC LCK   CV  C V    E  + L I+ ++CI C  C   CP DA+
Sbjct: 310 PFINTSNCKLCK--ACVLNCSVHAIEETGSALKINQEKCIQCYCCRELCPSDAV 361


>gi|332704369|ref|ZP_08424457.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554518|gb|EGJ51562.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 582

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V+E CI C    C   CP+      ++  A    ECI C VC   CP  AI  
Sbjct: 250 VSEKCIEC--GKCQRACPMQA--IADDPHATRHGECILCRVCAGVCPTGAIDF 298


>gi|330508588|ref|YP_004385016.1| putative methanogenesis marker 16 metalloprotein [Methanosaeta
           concilii GP-6]
 gi|328929396|gb|AEB69198.1| putative methanogenesis marker 16 metalloprotein [Methanosaeta
           concilii GP-6]
          Length = 434

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
              + C  CK       CP+    Y+ E  +AI     C  CG+C  ECP  A + 
Sbjct: 324 FDPQRCRGCKKCLVERACPMRAVRYDQEARVAIRDGSLCFHCGLCVTECPNGAFRC 379


>gi|304314189|ref|YP_003849336.1| indolepyruvate oxidoreductase, subunit alpha [Methanothermobacter
           marburgensis str. Marburg]
 gi|313104116|sp|P80910|IORA_METTM RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|302587648|gb|ADL58023.1| indolepyruvate oxidoreductase, subunit alpha [Methanothermobacter
           marburgensis str. Marburg]
          Length = 618

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E C LC        CP     E +  + I P  C  C +C   CP  AIKP+
Sbjct: 563 VDEEKCDLCLECLNELACP--AIVEEDGRVFIDPLYCRGCTICLQICPAGAIKPE 615


>gi|256841234|ref|ZP_05546741.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737077|gb|EEU50404.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 372

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + TE C  C     V+ C  D  +   N    I  + C+ CG C   C  D         
Sbjct: 191 IDTEACKGCNIG--VKHCAHDAIHLNNNRKAEIDYERCVGCGQCVALCQYDGAVMGEGDT 248

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E    +N +       + + K 
Sbjct: 249 SER---LNYKIDEYTKAVLSDKP 268


>gi|167770295|ref|ZP_02442348.1| hypothetical protein ANACOL_01638 [Anaerotruncus colihominis DSM
          17241]
 gi|167667617|gb|EDS11747.1| hypothetical protein ANACOL_01638 [Anaerotruncus colihominis DSM
          17241]
          Length = 279

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CV  CP       +  +   PD+C++C  C   CP  A
Sbjct: 46 CRNC--GACVPGCPEGALSMADGRVVWDPDKCVECDACIITCPHLA 89


>gi|167760454|ref|ZP_02432581.1| hypothetical protein CLOSCI_02828 [Clostridium scindens ATCC 35704]
 gi|167661953|gb|EDS06083.1| hypothetical protein CLOSCI_02828 [Clostridium scindens ATCC 35704]
          Length = 324

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C ++CP+           I+  ECI CG C   C   AI
Sbjct: 267 EKCVGC--GKCEKICPMQVDVTKN----INSPECIRCGECAKICSASAI 309


>gi|167632726|ref|ZP_02391052.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0442]
 gi|254743654|ref|ZP_05201339.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. Kruger B]
 gi|167531538|gb|EDR94203.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0442]
          Length = 491

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYVNWQTNKAE 240


>gi|218778106|ref|YP_002429424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759490|gb|ACL01956.1| Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1012

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 25/83 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------------IHPDECI--- 41
           YV TE CI C    C   CP     E    L                   I P++C+   
Sbjct: 103 YVDTEKCIAC--GQCAAKCPKKVTDEYNQGLIKRKAIYVPYPQAVPLKFAIDPEQCLKLT 160

Query: 42  --DCGVCEPECPVDAIKPDTEPG 62
              CG CE  CP  AI  D +  
Sbjct: 161 KDKCGNCEKVCPAGAILYDDKEK 183



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 7/68 (10%)

Query: 9    CILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  C    CV  CP       +         I+P  C  CG C   C   A+        
Sbjct: 943  CSSC--MVCVSTCPYSAPSMVKEGPNAGKAEINPVLCKGCGQCVASCRSGALHLQGFDTD 1000

Query: 64   ELWLKINS 71
            ++  +I  
Sbjct: 1001 QIMAQIRE 1008


>gi|281357901|ref|ZP_06244386.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
 gi|281315559|gb|EFA99587.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
          Length = 305

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +     C+ C    C  VCP  C              C  CG+C   CP  A+
Sbjct: 55  FFTPSRCVGC--GACFTVCPASCHRMENKMHLFDRKRCTQCGICAANCPAGAL 105


>gi|154483331|ref|ZP_02025779.1| hypothetical protein EUBVEN_01034 [Eubacterium ventriosum ATCC
           27560]
 gi|149735841|gb|EDM51727.1| hypothetical protein EUBVEN_01034 [Eubacterium ventriosum ATCC
           27560]
          Length = 575

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E C  C        CP     E    ++I    C  CG+C   C  DAI
Sbjct: 520 IPEKCKKCGLCL-ASGCPAITKNEDGT-ISIDQTLCNGCGLCMQNCHFDAI 568


>gi|56416854|ref|YP_153928.1| NADH dehydrogenase subunit I [Anaplasma marginale str. St. Maries]
 gi|222475219|ref|YP_002563635.1| NADH dehydrogenase I chain I (nuoI) [Anaplasma marginale str.
           Florida]
 gi|81359048|sp|Q5PAK7|NUOI_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56388086|gb|AAV86673.1| NADH dehydrogenase [Anaplasma marginale str. St. Maries]
 gi|222419356|gb|ACM49379.1| NADH dehydrogenase I chain I (nuoI) [Anaplasma marginale str.
           Florida]
          Length = 160

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 58  EERCIACKL--CEAICPAQAITIEAAERGDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 115

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                P  E   +   E       +    +    A      K 
Sbjct: 116 V--EGPNFEYATETREELMYNKEKLLCNGDVWEEALDFRIRKN 156


>gi|71908532|ref|YP_286119.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
           RCB]
 gi|71848153|gb|AAZ47649.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
           aromatica RCB]
          Length = 467

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP               +ECI C  C   C     K D   GL  +  
Sbjct: 262 CVDC--GICVQVCPTGIDIRNGL-----QNECIGCAACIDACDQVMDKMDYPRGLIRYST 314

Query: 69  INS 71
            N+
Sbjct: 315 ENA 317


>gi|120022|sp|P00194|FER1_RHORU RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|351273|prf||0905209A ferredoxin
          Length = 55

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y + E CI C    C   CPV+   +G+    ++ D CIDCG C   CPV A   +
Sbjct: 1  AYKIEETCISC--GACAAECPVNAIEQGDTIFVVNADTCIDCGNCANVCPVGAPVAE 55


>gi|21672444|ref|NP_660511.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008868|sp|Q8K9Y0|NUOI_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21623057|gb|AAM67722.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 180

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC                F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVDCISLQKSEKKNGRWYPKFFRINFSRCIFCGLCEEACPTAAIQ 115

Query: 57  PDTEPGLELWLKIN 70
              +  L  + + N
Sbjct: 116 LMPDFELSDFNRQN 129


>gi|49184989|ref|YP_028241.1| respiratory nitrate reductase subunit beta [Bacillus anthracis str.
           Sterne]
 gi|65319432|ref|ZP_00392391.1| COG1140: Nitrate reductase beta subunit [Bacillus anthracis str.
           A2012]
 gi|167638299|ref|ZP_02396576.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0193]
 gi|170686342|ref|ZP_02877563.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0465]
 gi|170706013|ref|ZP_02896475.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0389]
 gi|177650972|ref|ZP_02933869.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0174]
 gi|229603726|ref|YP_002866504.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0248]
 gi|254684715|ref|ZP_05148575.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. CNEVA-9066]
 gi|254737160|ref|ZP_05194864.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. Western North America USA6153]
 gi|254751475|ref|ZP_05203512.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. Vollum]
 gi|254758348|ref|ZP_05210375.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. Australia 94]
 gi|270000566|ref|NP_844524.2| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. Ames]
 gi|49178916|gb|AAT54292.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. Sterne]
 gi|167513600|gb|EDR88969.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0193]
 gi|170129015|gb|EDS97880.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0389]
 gi|170669418|gb|EDT20160.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0465]
 gi|172083433|gb|EDT68494.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0174]
 gi|229268134|gb|ACQ49771.1| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. A0248]
 gi|269850234|gb|AAP26010.2| respiratory nitrate reductase, beta subunit [Bacillus anthracis
           str. Ames]
          Length = 491

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV  CP    Y+ E    + +  + C     C   CP   +  + +     
Sbjct: 182 CEHCMNPSCVSSCPSGAMYKREEDGIVLVDQNACRAWRFCVSSCPYKKVYVNWQTNKAE 240


>gi|209695338|ref|YP_002263267.1| electron transport complex protein RnfB [Aliivibrio salmonicida
           LFI1238]
 gi|226735410|sp|B6EGH6|RNFB_ALISL RecName: Full=Electron transport complex protein rnfB
 gi|208009290|emb|CAQ79556.1| electron transport complex protein RnfB [Aliivibrio salmonicida
           LFI1238]
          Length = 194

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G +    +   EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIEAECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELW 66
           +T P    W
Sbjct: 165 NTTPDNWKW 173


>gi|161612713|ref|YP_001586678.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|161362077|gb|ABX65845.1| hypothetical protein SPAB_00411 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 287

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAKGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|148378021|ref|YP_001252562.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|148287505|emb|CAL81564.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
          Length = 354

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP   +        G+     +  +CI C  C+  CP  AI
Sbjct: 284 IKEKCIGCN--RCAEVCPEKPYVIDMIKKGGKKIPVWNMKKCIRCFCCQELCPKGAI 338


>gi|57640636|ref|YP_183114.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57158960|dbj|BAD84890.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus kodakarensis KOD1]
          Length = 296

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECP 51
           + TE+C+ C    C E CP  C Y  +     ++   C  C VC   CP
Sbjct: 66  INTESCVRC--GICYERCPYGCIYIDDEGNYVVNELTCEGCNVCGLVCP 112


>gi|88859826|ref|ZP_01134465.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata
           D2]
 gi|88817820|gb|EAR27636.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata
           D2]
          Length = 184

 Score = 43.8 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD           +  DEC  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGATRQMHTVLIDECTGCDLCVEPCPVDCIDM 161


>gi|330964654|gb|EGH64914.1| FixG-like protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 470

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C  T CV+VCP          +     ECI C  C   C     K D   GL  +
Sbjct: 270 CIDC--TLCVQVCPTGIDIRDGLQV-----ECIGCAACVDACNTVMDKMDYPRGLIRY 320


>gi|304382205|ref|ZP_07364713.1| ferredoxin [Prevotella marshii DSM 16973]
 gi|304336670|gb|EFM02898.1| ferredoxin [Prevotella marshii DSM 16973]
          Length = 55

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +C+ C    C++ CPV    EGE   +I+PD C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCVAC--GTCIDECPVSAISEGE-IYSINPDACTECGACAAVCPSEAI 52


>gi|290489764|gb|ADD31289.1| NADH-plastoquinone oxidoreductase subunit I protein [Nelumbo
           nucifera]
          Length = 180

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|288931386|ref|YP_003435446.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893634|gb|ADC65171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 558

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V ENC LC    C  +CP +   + +  L      CI+C +CE  CP +AI    E    
Sbjct: 431 VNENCTLCD--TCHRICPNEALKKEKGRLTFIHGLCINCKLCEKLCPENAIFVAPENIDL 488

Query: 65  LWLKINS 71
              +I  
Sbjct: 489 NEFEIEK 495


>gi|188589554|ref|YP_001922167.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499835|gb|ACD52971.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 321

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            E C+ C    CV  C    VD        +  + ++CI CG C   CP  A        
Sbjct: 169 KERCVSC--GACVRACKKKSVDALKAVNYKVVRNEEKCIGCGECVINCPTGA----WTRS 222

Query: 63  LELWLKI 69
            E + K+
Sbjct: 223 KEKYYKL 229


>gi|187776517|ref|ZP_02992990.1| hypothetical protein CLOSPO_00014 [Clostridium sporogenes ATCC
           15579]
 gi|187775176|gb|EDU38978.1| hypothetical protein CLOSPO_00014 [Clostridium sporogenes ATCC
           15579]
          Length = 392

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + E CI C    C EVCP     +D   +G+  +   +  +CI C  C+  CP  AI
Sbjct: 322 IEEKCIGCS--RCAEVCPEKPYVIDMIKKGDKKIPVWNMKKCIRCFCCQELCPKGAI 376


>gi|150401635|ref|YP_001325401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150014338|gb|ABR56789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 655

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 20/82 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV    C  C    C  VCP++   E +                      I  + CIDC 
Sbjct: 240 YVSESACTGC--GACAAVCPIEVPNEFDCGLGMRKAIYAPFPQAVPLVYTIDKEHCIDCK 297

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C+  C  DAI  + +P    +
Sbjct: 298 LCDKACGPDAIDYNQQPEEIKF 319



 Score = 41.9 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C  C    C  +CP +      +   +    C  CG C   CP  A++
Sbjct: 579 VNEDVCGAC--GICAPLCPYNAIKYENDLAVVDDIACKGCGSCAGACPSGAMQ 629


>gi|148642621|ref|YP_001273134.1| formate dehydrogenase, iron-sulfur subunit [Methanobrevibacter
          smithii ATCC 35061]
 gi|148551638|gb|ABQ86766.1| formate dehydrogenase, iron-sulfur subunit [Methanobrevibacter
          smithii ATCC 35061]
          Length = 167

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C++  CV++CP +              +CI CG+C   CP  AI
Sbjct: 44 CQHCENAPCVKICPTNAMTTDGVKTE----DCIGCGLCSIICPFGAI 86


>gi|78043320|ref|YP_359720.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995435|gb|ABB14334.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 349

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          K   CV VCP +  ++    +AI  +EC +CG C+  CP  AI
Sbjct: 29 KCGKCVTVCPANAIFKDGEKIAIKKEECTNCGFCKAVCPTGAI 71



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C  C    C  +CP       E  L      C++C +C   CP   +K D
Sbjct: 240 VIGE-CNGC--GVCERLCPTGALRLKEGELTFKAHLCLNCSLCVESCPQKILKYD 291


>gi|325959976|ref|YP_004291442.1| methanogenesis marker 16 metalloprotein [Methanobacterium sp.
           AL-21]
 gi|325331408|gb|ADZ10470.1| methanogenesis marker 16 metalloprotein [Methanobacterium sp.
           AL-21]
          Length = 423

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            E CI C +    E CP   + +      ++  +C  CG+C   CP  A   +T
Sbjct: 323 PEKCIKCDNCVVRERCPTGAYSDN-----LNLKKCFGCGMCVHSCPNQAFTMET 371


>gi|325267328|ref|ZP_08133990.1| NADH-quinone oxidoreductase subunit I [Kingella denitrificans ATCC
           33394]
 gi|324981265|gb|EGC16915.1| NADH-quinone oxidoreductase subunit I [Kingella denitrificans ATCC
           33394]
          Length = 195

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 93  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 150


>gi|299143653|ref|ZP_07036733.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298518138|gb|EFI41877.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 56

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y + ++CI C    C   CPVDC  EG+   +I+ D+CIDCG C   CP  A  P+ 
Sbjct: 1  MAYQINDSCIAC--GACKPECPVDCISEGD-IYSINADQCIDCGSCAAVCPTGAPNPED 56


>gi|265766041|ref|ZP_06094082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253709|gb|EEZ25174.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 278

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C ++CPV    +G+       + CI C  C   CP  A   DT 
Sbjct: 211 CTHC--GACAKMCPVSAIAKGDELNT-DAERCIKCCACVKGCPQKARVYDTP 259


>gi|238619025|ref|YP_002913850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|238380094|gb|ACR41182.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 228

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C++  C  VCP           + +   +C+ C  C   CP  A    T   
Sbjct: 72  FVPRLCMQCENPPCYYVCPTGATQIVVGGIVVVDEYKCMGCLYCVEACPYGARYFYTYED 131

Query: 63  LELWLK 68
           +E   +
Sbjct: 132 IEKSKE 137


>gi|183599240|ref|ZP_02960733.1| hypothetical protein PROSTU_02699 [Providencia stuartii ATCC 25827]
 gi|188021470|gb|EDU59510.1| hypothetical protein PROSTU_02699 [Providencia stuartii ATCC 25827]
          Length = 208

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           +  ENCI C  T C++ CPVD           +  D C  C +C   CP D I
Sbjct: 112 IDEENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCI 162


>gi|147678756|ref|YP_001212971.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
           thermopropionicum SI]
 gi|146274853|dbj|BAF60602.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
           thermopropionicum SI]
          Length = 303

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C  CK+  C++ C  +     E  + I  + CI CG CE  C   AI
Sbjct: 56  SCKFCKN--CIKACKKEAIIAEEKGVLIDRNLCIRCGKCEEVCLYKAI 101


>gi|134045265|ref|YP_001096751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662890|gb|ABO34536.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 132

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           E CI C    CV  CPV      +   + +  DECI C  C   CPV+AI
Sbjct: 80  EKCIDC--GACVVHCPVGAISVDDEFKILLDEDECIGCKNCAKICPVNAI 127


>gi|119897636|ref|YP_932849.1| putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Azoarcus sp. BH72]
 gi|119670049|emb|CAL93962.1| putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Azoarcus sp. BH72]
          Length = 474

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C  C   C     K     GL  +  
Sbjct: 267 CIDC--GICVQVCPTGIDIRKGLQY-----ECIGCAACIDACDQVMEKMSYPKGLIRYST 319

Query: 69  INS 71
            N+
Sbjct: 320 ENA 322


>gi|172064296|ref|YP_001811947.1| pyrogallol hydroxytransferase [Burkholderia ambifaria MC40-6]
 gi|171996813|gb|ACB67731.1| Pyrogallol hydroxytransferase [Burkholderia ambifaria MC40-6]
          Length = 288

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG-LELWL 67
           C  C    C+ V         +  + I PD+          CP  AI  + E    ++W+
Sbjct: 69  CNHCDDAPCMRVGGGAVRKRADGIVIIDPDKARGRKDIVKACPYKAIVWNEELQLPQIWI 128

Query: 68  KINSEYATQWPNITTKKESLPS 89
                    WP    ++     
Sbjct: 129 FDAHLLDQGWPRPRCQQSCPTD 150


>gi|77918361|ref|YP_356176.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380]
 gi|77544444|gb|ABA88006.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380]
          Length = 299

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVDA 54
            ++ T  C LC    C ++C  +     +          +I    C  CGVC   CP +A
Sbjct: 61  AFIETAKCQLC--GTCQKLCRFEAVRGPDTQSGSPESGYSIDSTACEGCGVCAHFCPAEA 118

Query: 55  IKPDTEPGLELWL 67
           I+       E ++
Sbjct: 119 IRFTDAQNGEWYI 131


>gi|153884|gb|AAA99277.1| anaerobic sulfite reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 337

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C    CV+ C    V C              CI CG C   CP  A +   +   
Sbjct: 178 DRCIGC--GACVKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLAWQRKPDQLW 235

Query: 64  E 64
           +
Sbjct: 236 Q 236


>gi|218887683|ref|YP_002437004.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|18150854|dbj|BAB83685.1| ORF2 [Desulfovibrio vulgaris]
 gi|218758637|gb|ACL09536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 372

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C   C V  F +  +  +      C+ C  C   CP +      +   +  +
Sbjct: 112 CNHCLEPACASACFVKAFTKNPDGSVTYDGSLCVGCRYCMIACPFNVPAFQYDEPFDPLI 171

Query: 68  K 68
           +
Sbjct: 172 Q 172


>gi|114048627|ref|YP_739177.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113890069|gb|ABI44120.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 476

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C     K D +  L  ++ 
Sbjct: 276 CVDCNL--CVEVCPTGIDIRQGLQY-----ECINCGACVDACNETMQKFDYKQNLISYVS 328

Query: 69  INS 71
            N 
Sbjct: 329 ENE 331


>gi|332980968|ref|YP_004462409.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mahella australiensis 50-1 BON]
 gi|332698646|gb|AEE95587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mahella
          australiensis 50-1 BON]
          Length = 56

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++CI C    C   C       G++   + P  C +CG C   CPVDA   +
Sbjct: 1  MPYRITDDCISC--GACEPDCEGGAISAGDDIYVVDPALCTECGNCADVCPVDACVLE 56


>gi|221211649|ref|ZP_03584628.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD1]
 gi|221169010|gb|EEE01478.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD1]
          Length = 288

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C P CPVD I  
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAM 134


>gi|170767989|ref|ZP_02902442.1| anaerobic sulfite reductase subunit C [Escherichia albertii
          TW07627]
 gi|170123477|gb|EDS92408.1| anaerobic sulfite reductase subunit C [Escherichia albertii
          TW07627]
          Length = 176

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 7  ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          E CI C    CV+ C    V C              CI CG C   CP  A +   E   
Sbjct: 17 ERCIGC--GACVKACAHHAVGCLSLKNGKATKEESACIGCGECVLACPTLAWQRKPEKFW 74

Query: 64 ELWLKINSEYATQWPNI 80
          +  +++    + + P I
Sbjct: 75 Q--IRLGGRTSKKTPRI 89


>gi|119899774|ref|YP_934987.1| iron-sulfur cluster-binding protein [Azoarcus sp. BH72]
 gi|119672187|emb|CAL96101.1| conserved hypothetical iron-sulfur cluster-binding protein
           [Azoarcus sp. BH72]
          Length = 701

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            C +  C+EVC  +      N + + P  C  CG C   CP  A+        +L L++ 
Sbjct: 325 GCNN--CIEVCSTEAIRADGNVITVDPYLCKGCGTCSTVCPSGALAFQYPRVADLGLQVK 382

Query: 71  SEYATQ 76
           +  A  
Sbjct: 383 TLLAEY 388



 Score = 36.9 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 5/47 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +  + C+ C    CV+ CP          L +    C     C   C
Sbjct: 198 IDLDLCVRC--HACVKACPEGAIGYD---LQVDLGRCAGHRACIAAC 239



 Score = 36.9 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           TE C LC    C   CP        +   +   E  C+ CG+C   CP  A+
Sbjct: 566 TEACTLC--MACTGACPAGALRAAGDSYRLDFIEKNCLQCGLCVSSCPETAL 615


>gi|108563637|ref|YP_627953.1| NADH dehydrogenase subunit I [Helicobacter pylori HPAG1]
 gi|115502531|sp|Q1CRZ3|NUOI_HELPH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|107837410|gb|ABF85279.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori HPAG1]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|39996340|ref|NP_952291.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|39983220|gb|AAR34614.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|298505349|gb|ADI84072.1| iron-sulfur cluster-binding oxidoreductase [Geobacter
           sulfurreducens KN400]
          Length = 149

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           C  C   DC+  C      + +  +  I  ++C+ C  C   CP  AI+
Sbjct: 62  CRHCDEPDCLRACISGAIQKNDQGVVRIDTEQCVGCWSCVMACPYGAIQ 110


>gi|332674071|gb|AEE70888.1| NADH-quinone oxidoreductase subunit I [Helicobacter pylori 83]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|330835139|ref|YP_004409867.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567278|gb|AEB95383.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 488

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDT 59
           C+ CK  DC + CPV       +F+        +C+  G C  +CP D I    
Sbjct: 419 CLSCKTVDCAKACPVGLTDMRASFIKKGEFKAFKCVGAGECIEDCPYDNIFIYD 472


>gi|308185016|ref|YP_003929149.1| NADH dehydrogenase subunit I [Helicobacter pylori SJM180]
 gi|308060936|gb|ADO02832.1| NADH dehydrogenase subunit I [Helicobacter pylori SJM180]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|303326306|ref|ZP_07356749.1| heterodisulfide reductase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864222|gb|EFL87153.1| heterodisulfide reductase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 653

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C+  CP     E    GE    +    C  CG+C   CP  AI+       
Sbjct: 584 RCVDC--GKCIRCCPFGAIKEVEIRGEQKAQVIETVCQGCGLCTATCPQGAIQLSHATDN 641

Query: 64  ELWLKINS 71
           ++  ++N+
Sbjct: 642 QILAEVNA 649



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 22/85 (25%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECID 42
            YV    C  C    C E CP                               I+   C  
Sbjct: 235 AYVDWSKCTGC--GACTEKCPSKKTPDAFNEFTGPTTAITIAFPQAIPKKAVINAAHCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AI+ D +  
Sbjct: 293 FVKGKCGVCAKVCPTGAIQYDMQDE 317


>gi|254975823|ref|ZP_05272295.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-66c26]
 gi|255093209|ref|ZP_05322687.1| anaerobic sulfite reductase subunit C [Clostridium difficile CIP
           107932]
 gi|255307248|ref|ZP_05351419.1| anaerobic sulfite reductase subunit C [Clostridium difficile ATCC
           43255]
 gi|255314952|ref|ZP_05356535.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-76w55]
 gi|255517626|ref|ZP_05385302.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-97b34]
 gi|255650737|ref|ZP_05397639.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-37x79]
 gi|260683823|ref|YP_003215108.1| anaerobic sulfite reductase subunit C [Clostridium difficile CD196]
 gi|260687483|ref|YP_003218617.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           R20291]
 gi|260209986|emb|CBA64002.1| anaerobic sulfite reductase subunit C [Clostridium difficile CD196]
 gi|260213500|emb|CBE05210.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           R20291]
 gi|328887691|emb|CAJ69116.2| Anaerobic sulfite reductase subunit C [Clostridium difficile]
          Length = 323

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    CV+ C    V       N +    D+CI CG C   CP +A   D +  
Sbjct: 171 KDRCVNC--GACVKKCSKISVGALKTENNKVVRDKDKCIGCGECVLNCPTNAWTRDEKKY 228

Query: 63  LE 64
             
Sbjct: 229 YR 230



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA 34
             + CI C   +CV  CP + +   E    
Sbjct: 202 DKDKCIGC--GECVLNCPTNAWTRDEKKYY 229


>gi|306520652|ref|ZP_07406999.1| anaerobic sulfite reductase, subunit C [Clostridium difficile
           QCD-32g58]
          Length = 302

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    CV+ C    V       N +    D+CI CG C   CP +A   D +  
Sbjct: 171 KDRCVNC--GACVKKCSKISVGALKTENNKVVRDKDKCIGCGECVLNCPTNAWTRDEKKY 228

Query: 63  LE 64
             
Sbjct: 229 YR 230



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA 34
             + CI C   +CV  CP + +   E    
Sbjct: 202 DKDKCIGC--GECVLNCPTNAWTRDEKKYY 229


>gi|126641075|ref|YP_001084059.1| putative iron-sulfur protein [Acinetobacter baumannii ATCC 17978]
          Length = 181

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I    +
Sbjct: 7  EDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVED 60


>gi|126699848|ref|YP_001088745.1| anaerobic sulfite reductase subunit C [Clostridium difficile 630]
          Length = 326

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    CV+ C    V       N +    D+CI CG C   CP +A   D +  
Sbjct: 174 KDRCVNC--GACVKKCSKISVGALKTENNKVVRDKDKCIGCGECVLNCPTNAWTRDEKKY 231

Query: 63  LE 64
             
Sbjct: 232 YR 233



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA 34
             + CI C   +CV  CP + +   E    
Sbjct: 205 DKDKCIGC--GECVLNCPTNAWTRDEKKYY 232


>gi|330864198|emb|CBX74259.1| electron transport complex protein rnfB [Yersinia enterocolitica
          W22703]
          Length = 126

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           ++   NCI C  T C++ CPVD           + PD C  C +C   CP D I+ 
Sbjct: 29 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIEM 83


>gi|331088814|ref|ZP_08337724.1| hypothetical protein HMPREF1025_01307 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407337|gb|EGG86840.1| hypothetical protein HMPREF1025_01307 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 291

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E C+ C    C  VC +D           +  ECI CG C   CP DAI    
Sbjct: 231 VDHEKCVGC--QKCSRVCKMDVNVVDTP----NHPECIRCGECMKACPTDAICYHY 280


>gi|303249174|ref|ZP_07335413.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio fructosovorans
           JJ]
 gi|302489447|gb|EFL49395.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio fructosovorans
           JJ]
          Length = 296

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  E C  C    C E+C         +   +  + C  CG C   CP  AI
Sbjct: 64  PVIDVELCTRC--GACREICQFAAITILGDTPVVFDEMCHGCGACAAVCPFGAI 115


>gi|297584150|ref|YP_003699930.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Bacillus selenitireducens MLS10]
 gi|297142607|gb|ADH99364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          selenitireducens MLS10]
          Length = 182

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
          +C  C+  +C+ VCP   F +  + +  ++   C  CG+C   CP DAI
Sbjct: 50 SCHHCQSPECLRVCPKQTFSKDRDGIVKLNEQICDGCGLCAAACPFDAI 98


>gi|222054741|ref|YP_002537103.1| Formate dehydrogenase transmembrane domain protein [Geobacter sp.
           FRC-32]
 gi|221564030|gb|ACM20002.1| Formate dehydrogenase transmembrane domain protein [Geobacter sp.
           FRC-32]
          Length = 258

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVC--PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            E C+ C    C++VC  P   +   +  +A + ++CI C  C   CP +  +   +  L
Sbjct: 72  NERCMHCGDAGCLKVCPSPGALYRTRDGIIAYNKEKCISCKYCVSACPFNIPRYGADDKL 131

Query: 64  EL 65
             
Sbjct: 132 AK 133


>gi|221199573|ref|ZP_03572617.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2M]
 gi|221205527|ref|ZP_03578542.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2]
 gi|221174365|gb|EEE06797.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2]
 gi|221180858|gb|EEE13261.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2M]
          Length = 288

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C P CPVD I  
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAM 134


>gi|292559560|ref|YP_003540987.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera]
 gi|156598105|gb|ABU85318.1| NADH-plastoquinone oxidoreductase subunit I [Elaeis oleifera]
 gi|290790968|gb|ADD63223.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera]
 gi|294620633|gb|ADF28202.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera]
          Length = 180

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFERDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTSDRHELN 136


>gi|153806402|ref|ZP_01959070.1| hypothetical protein BACCAC_00665 [Bacteroides caccae ATCC 43185]
 gi|149131079|gb|EDM22285.1| hypothetical protein BACCAC_00665 [Bacteroides caccae ATCC 43185]
          Length = 501

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 26/111 (23%)

Query: 1   MTYVV--TENCI----LCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPE 49
           M YVV   ENCI          C E CP        + +G     ++ + C+ CG CE  
Sbjct: 404 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 463

Query: 50  CPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
           CP         P   ++++ N       P     K     + +  G    +
Sbjct: 464 CPAR-------PFRAIYIEGN-------PVQKEAK-PFKESEEHKGEIDDF 499



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + ++ C  C    C   C   C    E    I    C+DC  C   C   A+  
Sbjct: 221 IDSDKCNSC--GLCATKCKAACINSKE--HTIDYGRCVDCFDCLGGCKQKALIY 270


>gi|57234310|ref|YP_181645.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
           195]
 gi|57224758|gb|AAW39815.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
           195]
          Length = 136

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
            C  C    CV +CPVD F   E+   I     +CI CG+C   CP  A+
Sbjct: 85  RCTHC--GACVTMCPVDAFSIDEDNREINFDAKKCIVCGICIQACPPRAM 132


>gi|62181094|ref|YP_217511.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62128727|gb|AAX66430.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|322715581|gb|EFZ07152.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAIIGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     ++ L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|51246903|ref|YP_066787.1| electron transfer flavoprotein, alpha subunit [Desulfotalea
          psychrophila LSv54]
 gi|50877940|emb|CAG37780.1| probable electron transfer flavoprotein, alpha subunit
          [Desulfotalea psychrophila LSv54]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           CI C    C   CPV C    +     I+  +CI C  C   CP +A+
Sbjct: 18 KCISC-GGRCESSCPVACITMSDAGEPQINTAKCIGCKKCVKACPGEAL 65


>gi|320335010|ref|YP_004171721.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Deinococcus maricopensis DSM 21211]
 gi|319756299|gb|ADV68056.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Deinococcus maricopensis DSM 21211]
          Length = 326

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VV + CI C    C  VCP +         GE  L +    C  C  C   CP  AI   
Sbjct: 248 VVDDTCIDC--PVCANVCPTNAITRDFQPTGEVTLTLDLAACTSCNACAQSCPPQAITLQ 305

Query: 59  TEPGLELWLK 68
            E  +E + +
Sbjct: 306 PEWPIEAFGE 315



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 11 LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C    C   CP D      + + I+   C  CG+C   CP  A++ D
Sbjct: 33 GCD--ACARACPHDAVILT-HTVEINEANCTGCGLCVQACPSGALEFD 77


>gi|317178011|dbj|BAJ55800.1| NADH dehydrogenase subunit I [Helicobacter pylori F16]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|293391830|ref|ZP_06636164.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952364|gb|EFE02483.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 207

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           ++C  C +  CV VCP    +  ++   +   +  C+ C  C   CP  
Sbjct: 74  QSCQHCTNAPCVAVCPTGASFIDKDTGIVDVHKELCVGCQYCIAVCPYR 122


>gi|227500654|ref|ZP_03930703.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Anaerococcus tetradius ATCC 35098]
 gi|227217241|gb|EEI82585.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Anaerococcus tetradius ATCC 35098]
          Length = 320

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
            CI C    CV VCP    Y       +H D  CI C  CE  C   AI+   E  
Sbjct: 64  ACINC--GQCVNVCPKKIHYMENGIHKVHRDITCIGCRRCEKNCLQKAIEIVGEDK 117


>gi|170699221|ref|ZP_02890273.1| Pyrogallol hydroxytransferase [Burkholderia ambifaria IOP40-10]
 gi|170135881|gb|EDT04157.1| Pyrogallol hydroxytransferase [Burkholderia ambifaria IOP40-10]
          Length = 288

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG-LELWL 67
           C  C    C+ V         +  + I PD+          CP  AI  + E    ++W+
Sbjct: 69  CNHCDDAPCMRVGGGAVRKRADGIVIIDPDKARGRKDIVKACPYKAIVWNEELQLPQIWI 128

Query: 68  KINSEYATQWPNITTKKESLPS 89
                    WP    ++     
Sbjct: 129 FDAHLLDQGWPRPRCQQSCPTD 150


>gi|221135173|ref|ZP_03561476.1| electron transport complex protein RnfB [Glaciecola sp. HTCC2999]
          Length = 193

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+    CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 107 AYIREAECIGC--TKCIQACPVDAIIGASKQMHTVIVDECTGCDLCVAPCPVDCIDM 161


>gi|15645882|ref|NP_208060.1| NADH dehydrogenase subunit I [Helicobacter pylori 26695]
 gi|81341662|sp|O25858|NUOI_HELPY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|2314433|gb|AAD08312.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Helicobacter
           pylori 26695]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|83310779|ref|YP_421043.1| NADH dependent phenylglyoxylate [Magnetospirillum magneticum AMB-1]
 gi|82945620|dbj|BAE50484.1| NADH dependant phenylglyoxylate [Magnetospirillum magneticum AMB-1]
          Length = 469

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  C  C    CV+VCP     +  G   +     +C+DC +C   C    I  D 
Sbjct: 48  TALCRQCGDPKCVQVCPSGALDKDGGNGIIGWDASKCVDCLLCTAGCAYGGIAVDE 103


>gi|53714499|ref|YP_100491.1| putative ferredoxin [Bacteroides fragilis YCH46]
 gi|253565000|ref|ZP_04842456.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52217364|dbj|BAD49957.1| putative ferredoxin [Bacteroides fragilis YCH46]
 gi|251946465|gb|EES86842.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 278

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C ++CPV    +G+       + CI C  C   CP  A   DT 
Sbjct: 211 CTHC--GACAKMCPVSAIAKGDELNT-DAERCIKCCACVKGCPQKARVYDTP 259


>gi|150389448|ref|YP_001319497.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949310|gb|ABR47838.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
          Length = 595

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 3   YVVTENCILCKHTDCVE-VCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           YV    CI C+   CV   CP     E     +   +I  + C+ C +C   CPV+AIK 
Sbjct: 534 YVDPSICIGCR--SCVNTNCPPIRMKEYKDYDKLKSSIDANMCVGCSICAQVCPVNAIKR 591

Query: 58  DTEP 61
               
Sbjct: 592 SESD 595


>gi|317490386|ref|ZP_07948870.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325833484|ref|ZP_08165933.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|316910521|gb|EFV32146.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325485408|gb|EGC87877.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 211

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           TY V+  C  C    C+  CP     +      + I+ ++C   G C   CP +    D
Sbjct: 60  TYHVSLGCQHCAMPACMAKCPQGAIEKDTKTGLVHINQEKCTGVGACVETCPYNVPIVD 118


>gi|303245960|ref|ZP_07332242.1| iron-sulfur binding protein [Desulfovibrio fructosovorans JJ]
 gi|302492743|gb|EFL52611.1| iron-sulfur binding protein [Desulfovibrio fructosovorans JJ]
          Length = 166

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          +   C+ C H  C E+CP        +    I    C+    C   CP  
Sbjct: 45 IPRRCMHCAHPPCAELCPWGAVAAFPDGAVRIDDSICLGGAKCPTVCPWH 94


>gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C E CPV       E    I P+ C  CG+CE ECP + I
Sbjct: 547 IDEEACEAC--GVCKEECPVSAITGSKEEGYEIDPEICESCGICEEECPFEVI 597


>gi|299531510|ref|ZP_07044916.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          S44]
 gi|298720473|gb|EFI61424.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          S44]
          Length = 86

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y GE F  I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCD--VCEPECPNDAIYMGEEFYEIDPHKCTECVGHFDEPQCVQICPVAC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKKE 85
          I     P    +++       ++  +T  K+
Sbjct: 59 I-----PVNPEYIESREVLFKKYELLTQAKK 84


>gi|260592587|ref|ZP_05858045.1| conserved domain protein [Prevotella veroralis F0319]
 gi|260535357|gb|EEX17974.1| conserved domain protein [Prevotella veroralis F0319]
          Length = 56

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV+   EG+    I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIAC--GTCIDECPVEAISEGD-IYKIDADACTECGTCASVCPNEAI 52


>gi|227499762|ref|ZP_03929862.1| ferredoxin [Anaerococcus tetradius ATCC 35098]
 gi|227218148|gb|EEI83414.1| ferredoxin [Anaerococcus tetradius ATCC 35098]
          Length = 57

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI  +
Sbjct: 1  MAYRIDENTCISC--GSCEGECPVGAIAQGDAAYEIDADACIDCGSCAAVCPVEAIDQE 57


>gi|207091606|ref|ZP_03239393.1| NADH dehydrogenase subunit I [Helicobacter pylori HPKX_438_AG0C1]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|168185419|ref|ZP_02620054.1| ferredoxin [Clostridium botulinum C str. Eklund]
 gi|169296359|gb|EDS78492.1| ferredoxin [Clostridium botulinum C str. Eklund]
          Length = 277

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++  + CI C    C +VC  +   + +  + +    C  CG CE  C   A+     P
Sbjct: 58  PFINDDKCINC--GKCAKVCQFNALVKTKKDIILFERLCHSCGACEIVCDTGALTYRKRP 115


>gi|150401313|ref|YP_001325079.1| hypothetical protein Maeo_0885 [Methanococcus aeolicus Nankai-3]
 gi|150014016|gb|ABR56467.1| protein of unknown function DUF362 [Methanococcus aeolicus
           Nankai-3]
          Length = 371

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  CK   C  VCPV+          +   +CI+C  C   C  DAI
Sbjct: 320 RCRKCK--ICEMVCPVNAITISNFK--VDAKKCINCYCCHEMCGFDAI 363


>gi|83310159|ref|YP_420423.1| ferredoxin [Magnetospirillum magneticum AMB-1]
 gi|82945000|dbj|BAE49864.1| Ferredoxin [Magnetospirillum magneticum AMB-1]
          Length = 99

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI------DCGVCEPECPVDA 54
          M  ++T+ CI C    C + CP +   +GE    I P+ C       D   C   CPVD 
Sbjct: 1  MALLITDQCINCD--VCEQECPNEAITQGEEIFVIDPNRCTECVGHYDYPQCIEHCPVDC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IIVDPD 64


>gi|294141107|ref|YP_003557085.1| electron transport complex protein rnfB [Shewanella violacea DSS12]
 gi|293327576|dbj|BAJ02307.1| electron transport complex protein rnfB [Shewanella violacea DSS12]
          Length = 189

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGAGKLMHTVITDYCTGCDLCVEPCPVDCIDM 161


>gi|282165282|ref|YP_003357667.1| pyruvate synthase delta chain [Methanocella paludicola SANAE]
 gi|282157596|dbj|BAI62684.1| pyruvate synthase delta chain [Methanocella paludicola SANAE]
          Length = 94

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E CI CK   C + CP    YE      +    I  D C  CG+C  ECPVDAI  + E 
Sbjct: 36 EKCIGCK--RCADSCPDGAPYECAHDGKKKKFCIDYDYCKGCGICAYECPVDAINMEKEE 93

Query: 62 G 62
           
Sbjct: 94 K 94


>gi|238912647|ref|ZP_04656484.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|225850213|ref|YP_002730447.1| respiratory nitrate reductase 1 beta chain (Nitratereductase A
           subunit beta) (Quinol-nitrate oxidoreductase
           subunitbeta) [Persephonella marina EX-H1]
 gi|225644859|gb|ACO03045.1| respiratory nitrate reductase 1 beta chain (Nitratereductase A
           subunit beta) (Quinol-nitrate oxidoreductase
           subunitbeta) [Persephonella marina EX-H1]
          Length = 380

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP +  ++ E    + +  D C     C   CP   I  
Sbjct: 133 CNHCSNPGCLAACPREAIFKREQDGIVLVDLDRCQGYRYCIAGCPYKKIYF 183


>gi|126465959|ref|YP_001041068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Staphylothermus marinus F1]
 gi|126014782|gb|ABN70160.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Staphylothermus marinus F1]
          Length = 175

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPD--ECIDCGVCEPECPVDAI 55
          +    CI C    CV VCP +     + EN + I+     CI CG C   CPV AI
Sbjct: 43 IDPSKCIAC--GACVNVCPPNALTLSKQENIIMINYFIGRCIFCGRCAEVCPVGAI 96


>gi|123420768|ref|XP_001305829.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121887370|gb|EAX92899.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
          Length = 268

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+ +NC+ C    C   C  D          + P++C  CG+C   C   AI  D 
Sbjct: 215 VIEDNCVGCS--QCELSCCYDAIKVVNAVAKVTPEKCFKCGLCYSRCLNHAITIDE 268


>gi|59711970|ref|YP_204746.1| formate hydrogenlyase subunit 6 [Vibrio fischeri ES114]
 gi|59480071|gb|AAW85858.1| formate hydrogenlyase subunit 6 [Vibrio fischeri ES114]
          Length = 566

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 10  ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI        +
Sbjct: 195 KGCE--RCVDACPAGALTSEGSDQTGHHIQINPYLCQGVGTCATACPTEAISYALPEAEK 252



 Score = 38.0 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T++C LC    CV VCP    +       L     +C+ CG+C   CP   +    +   
Sbjct: 430 TKDCTLCMG--CVAVCPTRALHSDPDSPTLKFIEQDCVQCGLCVSACPEKVLSMKVQMNW 487

Query: 64  EL 65
             
Sbjct: 488 NQ 489


>gi|88809899|ref|ZP_01125405.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7805]
 gi|88786283|gb|EAR17444.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7805]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|46125447|ref|XP_387277.1| hypothetical protein FG07101.1 [Gibberella zeae PH-1]
          Length = 607

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV                  I    CI CG+C   CP DA
Sbjct: 11 VNSDKCRPRKCR-QECKKSCPVVRSGKLCIEVQPESKLAFISESLCIGCGICPKRCPFDA 69

Query: 55 IK 56
          I 
Sbjct: 70 IN 71


>gi|308274764|emb|CBX31363.1| hypothetical protein N47_E48750 [uncultured Desulfobacterium sp.]
          Length = 1412

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 7/59 (11%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKP 57
            V  + CI C    C E+CP       +           P  C  CG+C   CP  AI  
Sbjct: 1340 VDAQKCIGC--GLCAEICPFGGIIMEDFEGKGQRAKNVPASCKGCGLCAASCPQKAIDM 1396


>gi|302872143|ref|YP_003840779.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575002|gb|ADL42793.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 598

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +NC  CK    V  CP     E  N + I    C  CG+C+  C   AI
Sbjct: 540 FKINQNCSNCKVCLQVTGCPALNEDENGN-IFIDSTLCNGCGLCKSFCRYSAI 591


>gi|261414556|ref|YP_003248239.1| nitrite and sulphite reductase 4Fe-4S region [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371012|gb|ACX73757.1| nitrite and sulphite reductase 4Fe-4S region [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327419|gb|ADL26620.1| putative sulfite reductase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 286

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    C +VC  +        +    ++C  CG C   CP DA
Sbjct: 162 EDKCIGC--GLCAKVCRKEAIKIENKKVIFDKEKCNYCGRCYKSCPTDA 208


>gi|222111080|ref|YP_002553344.1| RnfABCDGE type electron transport complex subunit B [Acidovorax
           ebreus TPSY]
 gi|221730524|gb|ACM33344.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           ebreus TPSY]
          Length = 212

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +    CI C  T C++ CP D      +    +    C  C +C P CPVD I+ +
Sbjct: 83  AVIDENWCIGC--TLCLKACPTDAILGINKRMHTVIAPHCTGCELCLPACPVDCIRME 138


>gi|197286928|ref|YP_002152800.1| formate dehydrogenase-O subunit beta [Proteus mirabilis HI4320]
 gi|227354833|ref|ZP_03839250.1| formate dehydrogenase-O beta subunit [Proteus mirabilis ATCC 29906]
 gi|194684415|emb|CAR46111.1| formate dehydrogenase-O beta subunit [Proteus mirabilis HI4320]
 gi|227165151|gb|EEI49982.1| formate dehydrogenase-O beta subunit [Proteus mirabilis ATCC 29906]
          Length = 312

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +      CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINEEDN 155


>gi|149390318|ref|YP_001294149.1| NADH-plastoquinone oxidoreductase subunit I [Chloranthus spicatus]
 gi|156632610|sp|A6MMH3|NDHI_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|146744238|gb|ABQ43310.1| NADH-plastoquinone oxidoreductase subunit I [Chloranthus spicatus]
          Length = 180

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|146415250|ref|XP_001483595.1| hypothetical protein PGUG_04324 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 607

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    CK  +C + CPV                  I    CI CG+C  +CP DA
Sbjct: 11 VSTDRCKPKKCK-QECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDA 69

Query: 55 IK 56
          I 
Sbjct: 70 IN 71


>gi|91202589|emb|CAJ72228.1| similar to NAD(P) oxidoreductase, FAD-containing subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 566

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 23/75 (30%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG---------------------ENFLAIHPDECID 42
            + E CILC    C++VCP +C                         +  + I  ++CI 
Sbjct: 486 FIDEKCILC--GGCIDVCPYNCISMVSRENISLPDSLRNEENIPEEWDAAMIIDEEKCIR 543

Query: 43  CGVCEPECPVDAIKP 57
           CG+C   CP  AI  
Sbjct: 544 CGLCVKRCPTRAITM 558


>gi|150017573|ref|YP_001309827.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904038|gb|ABR34871.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 267

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V +NC  C+   C ++CPV+      N   I    C  C  C   CP +AI+ 
Sbjct: 193 FWVDDNCNGCRL--CEKICPVNNIQFNINKP-IWKHNCEQCAACIQYCPKEAIQW 244


>gi|312875814|ref|ZP_07735804.1| Indolepyruvate ferredoxin oxidoreductase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797295|gb|EFR13634.1| Indolepyruvate ferredoxin oxidoreductase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 506

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YV  E C  CK   C+ + CP     E      I  + C+ CG+CE  C   AI    E
Sbjct: 452 YVDFEKCKNCK--VCLSLGCPAISIKE---KPTIDENLCLACGMCEDVCKFGAISSQKE 505


>gi|304314067|ref|YP_003849214.1| carbon monoxide dehydrogenase, iron sulfur subunit
          [Methanothermobacter marburgensis str. Marburg]
 gi|302587526|gb|ADL57901.1| carbon monoxide dehydrogenase, iron sulfur subunit
          [Methanothermobacter marburgensis str. Marburg]
          Length = 154

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          C+ C  +   C  +CPV    E +  L I  D CI C +C   CP   I  D+E     
Sbjct: 39 CLQCHPEKAPCARICPVGAIREVDGALVIDEDACILCKLCMVACPAGMIVLDSEKKSAE 97


>gi|222099246|ref|YP_002533814.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana
          DSM 4359]
 gi|221571636|gb|ACM22448.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana
          DSM 4359]
          Length = 507

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV VC     Y  E  N +     +C+ C  CE  CP +AI
Sbjct: 18 KCIRCL--ACVRVCSYGANYYDENANRVYTENYKCVGCHFCEAICPTEAI 65


>gi|167629238|ref|YP_001679737.1| hypothetical protein HM1_0834 [Heliobacterium modesticaldum Ice1]
 gi|167591978|gb|ABZ83726.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 286

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M     E C+ C    C +VC        +    + P+ C  CG C   CP  AI     
Sbjct: 61  MPAFNLEKCVGC--GRCRDVCRFQALIMVKGKPMLFPENCHACGGCSRHCPSRAITEVER 118

Query: 61  P 61
           P
Sbjct: 119 P 119


>gi|166712771|ref|ZP_02243978.1| ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 142

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I+  
Sbjct: 84  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIQLH 139


>gi|121594420|ref|YP_986316.1| RnfABCDGE type electron transport complex subunit B [Acidovorax sp.
           JS42]
 gi|120606500|gb|ABM42240.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           sp. JS42]
          Length = 217

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +    CI C  T C++ CP D      +    +    C  C +C P CPVD I+ +
Sbjct: 83  AVIDENWCIGC--TLCLKACPTDAILGINKRMHTVIAPHCTGCELCLPACPVDCIRME 138


>gi|158321164|ref|YP_001513671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158141363|gb|ABW19675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 362

 Score = 43.4 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+      +CP D        +++  + CI CG+C+  CP  AI+ 
Sbjct: 31 DPCTKCRD-----ICPKDAMLLNSGKISMDENLCIGCGLCKAVCPTQAIQM 76



 Score = 41.1 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T+ + E C  C    C   CP   +     +G   L  H  +C  C  C   C   AI+ 
Sbjct: 251 TWRINEQCNGC--GQCQSACPNKAWSLEKEDGTLKLYHHAGKCYQCRKCIESCSKKAIEG 308

Query: 58  DT 59
           D 
Sbjct: 309 DD 310


>gi|325929561|ref|ZP_08190675.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           perforans 91-118]
 gi|325540071|gb|EGD11699.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           perforans 91-118]
          Length = 142

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 84  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 136


>gi|304314083|ref|YP_003849230.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
 gi|302587542|gb|ADL57917.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
          Length = 143

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C+ C  +   C+ +CP D   E +  + I  D+CI CG+C   CP+ AI  + 
Sbjct: 36 CMHCAPERAPCLNICPEDAIVEVDGAVVILEDKCIGCGLCRDACPIGAITINE 88


>gi|284162671|ref|YP_003401294.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631]
 gi|284012668|gb|ADB58621.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631]
          Length = 405

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAI 55
          M + V  +NC+ C+   CV+ CP        N     + ++ + C  CG C   CP +A+
Sbjct: 1  MAHHVNSDNCVGCRM--CVDACPSGALSSKFNGSILTIILNSELCTGCGSCVDICPFNAL 58

Query: 56 KPDTEPGLELW 66
          +      ++ +
Sbjct: 59 ELVPREEVKEF 69



 Score = 34.2 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 29/91 (31%)

Query: 6   TENCILCKHTDCVEVCPVDC---------------------------FYEGENFLAIHPD 38
           +E C  C    CV++CP +                             Y       +   
Sbjct: 40  SELCTGC--GSCVDICPFNALELVPREEVKEFKIEIDILRPEKIEKKKYYMIARKVVDVS 97

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C  CG C    P   I  D       W+KI
Sbjct: 98  YCTGCGACTVCPPNGIIWKDGVVDFPDWVKI 128


>gi|264676947|ref|YP_003276853.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          CNB-2]
 gi|262207459|gb|ACY31557.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          CNB-2]
          Length = 86

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y GE F  I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCD--VCEPECPNDAIYMGEEFYEIDPHKCTECVGHFDEPQCVQICPVAC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKKE 85
          I     P    +++       ++  +T  K+
Sbjct: 59 I-----PVNPEYIESREVLFKKYEQLTQAKK 84


>gi|224369308|ref|YP_002603472.1| HdrL1 [Desulfobacterium autotrophicum HRM2]
 gi|223692025|gb|ACN15308.1| HdrL1 [Desulfobacterium autotrophicum HRM2]
          Length = 1482

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEG-----ENFLAIHPDECIDCGVCEPECPVDAIK 56
              V    C  C    CV +CP            +    I+P  C  CG+C   C   A+ 
Sbjct: 1405 ATVDPMVCSSC--GVCVSICPYSAPSFATEGRFKGKAEINPVLCKGCGLCVASCRSGALH 1462

Query: 57   PDTEPGLELWLKI 69
                   +++ +I
Sbjct: 1463 LKGFDTNQIFAQI 1475



 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           ++ T  C  C   +C E CPV      E  L 
Sbjct: 103 FIDTAKCTGC--GECAEACPVTLPSIFEQGLT 132


>gi|190347874|gb|EDK40226.2| hypothetical protein PGUG_04324 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 607

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    CK  +C + CPV                  I    CI CG+C  +CP DA
Sbjct: 11 VSTDRCKPKKCK-QECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDA 69

Query: 55 IK 56
          I 
Sbjct: 70 IN 71


>gi|204929685|ref|ZP_03220759.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|204321404|gb|EDZ06604.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|322613728|gb|EFY10667.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322619529|gb|EFY16405.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322625034|gb|EFY21863.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322629523|gb|EFY26299.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322634046|gb|EFY30783.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322635516|gb|EFY32227.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322639808|gb|EFY36487.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322644430|gb|EFY40971.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322648575|gb|EFY45024.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322655205|gb|EFY51514.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322658252|gb|EFY54518.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322664253|gb|EFY60450.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322669420|gb|EFY65569.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322673147|gb|EFY69253.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322676539|gb|EFY72607.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322683289|gb|EFY79303.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322685825|gb|EFY81818.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|323194768|gb|EFZ79956.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323199544|gb|EFZ84635.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323204681|gb|EFZ89679.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323208129|gb|EFZ93074.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323210147|gb|EFZ95048.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323217015|gb|EGA01737.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323221813|gb|EGA06217.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323225008|gb|EGA09263.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323229297|gb|EGA13421.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323235388|gb|EGA19472.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323237426|gb|EGA21489.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323245180|gb|EGA29181.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323248883|gb|EGA32809.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323253170|gb|EGA37002.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323255404|gb|EGA39172.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323262037|gb|EGA45602.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323266348|gb|EGA49836.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323269821|gb|EGA53271.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|158522287|ref|YP_001530157.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfococcus oleovorans Hxd3]
 gi|158511113|gb|ABW68080.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfococcus oleovorans Hxd3]
          Length = 776

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 7/50 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPV 52
           NC  C    CV  CP       E         +    CI CG C   CP 
Sbjct: 716 NCRDC--GICVTACPQSAISRAEKPDSGFAYEVDETLCIGCGFCAGACPC 763


>gi|150019923|ref|YP_001305277.1| cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
 gi|149792444|gb|ABR29892.1| Cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
          Length = 290

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +    C  C    C +VC  +          +    C  C  C   CP +AI+ +T  
Sbjct: 61  AVIDQTKCDKC--GICKKVCRFEAIGFKNEKYDVDQFACEGCNACVIACPRNAIRLETAL 118

Query: 62  GLELWL 67
             E + 
Sbjct: 119 SGEYYY 124


>gi|78485170|ref|YP_391095.1| NADH dehydrogenase subunit I [Thiomicrospira crunogena XCL-2]
 gi|115502545|sp|Q31HF2|NUOI_THICR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|78363456|gb|ABB41421.1| NADH dehydrogenase I chain I [Thiomicrospira crunogena XCL-2]
          Length = 163

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP +                    I   +CI CG CE  CPVDA+
Sbjct: 61  EERCIACKL--CEAVCPANAITIESEERDDGTRRTTQYDIDMFKCIYCGFCEEACPVDAV 118


>gi|68349559|gb|AAY96662.1| formate dehydrogenase beta subunit [uncultured bacterium BAC10-4]
          Length = 290

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + C+ C+   C+  CP      + EN +  + P +CI C +C   CP +  +  
Sbjct: 97  KDQCLHCEDPGCLAACPAPGAIVQYENGIVDVDPQKCIGCQLCLTGCPFNVPRFH 151


>gi|288962886|ref|YP_003453180.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288915152|dbj|BAI76636.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 505

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP+               +CI+CG+C   C    I+      L  +  
Sbjct: 288 CIDC--GQCVQVCPIGIDVRTGEQA-----DCINCGLCVDACDGIMIQQGLPTRLIAFDS 340

Query: 69  INSE 72
           + ++
Sbjct: 341 LAAQ 344


>gi|239626566|ref|ZP_04669597.1| dimethylsulfoxide reductase [Clostridiales bacterium 1_7_47_FAA]
 gi|239516712|gb|EEQ56578.1| dimethylsulfoxide reductase [Clostridiales bacterium 1_7_47FAA]
          Length = 173

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C+ C    CV+ CP  C  +     F       CI C  C   CP  A +     
Sbjct: 60  ACMHCTDAPCVDACPAGCLGKDPETGFTVYDNTNCIGCKSCAMACPFGAPRYRVTD 115


>gi|167036163|ref|YP_001671394.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas putida GB-1]
 gi|170719528|ref|YP_001747216.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas putida W619]
 gi|325273725|ref|ZP_08139925.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas sp. TJI-51]
 gi|166862651|gb|ABZ01059.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
          putida GB-1]
 gi|169757531|gb|ACA70847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
          putida W619]
 gi|324101145|gb|EGB98791.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas sp. TJI-51]
          Length = 83

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCD--VCEPECPNEAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 IPLD-EAHPETEEQLMAKY 76


>gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 637

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y+  E C  C  T C + CP      G+N +  +   +C  CG C   CP  
Sbjct: 560 YIEPEKCQAC--TSCGKKCPAGAIEGGKNQIHMVDQAKCTKCGACLQACPPR 609


>gi|84489512|ref|YP_447744.1| putative dissimilatory sulfite reductase [Methanosphaera stadtmanae
           DSM 3091]
 gi|84372831|gb|ABC57101.1| putative dissimilatory sulfite reductase [Methanosphaera stadtmanae
           DSM 3091]
          Length = 289

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    CV+VC           +  +   C+ CG C   C  +AI    E G E+++
Sbjct: 166 KCVGC--GLCVDVCKPKALEIINKKVVQNKTLCVSCGDCVRTCKFEAITT-KEKGAEIFI 222


>gi|78778547|ref|YP_396659.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9312]
 gi|110287703|sp|Q31D22|NDHI_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|78712046|gb|ABB49223.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus
           marinus str. MIT 9312]
          Length = 208

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELWLKINSEY 73
               E  L  + + N  +
Sbjct: 120 SMTEEYELATFDRHNLNF 137


>gi|330998773|ref|ZP_08322501.1| electron transport complex, RnfABCDGE type, B subunit
           [Parasutterella excrementihominis YIT 11859]
 gi|329576270|gb|EGG57786.1| electron transport complex, RnfABCDGE type, B subunit
           [Parasutterella excrementihominis YIT 11859]
          Length = 198

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +    CI C+   C + CP D       +   +  + C  C +C+  CPVD I       
Sbjct: 77  IDPNKCIGCRL--CSDACPTDAIIGSPKHMHCVDAERCNGCCLCQLACPVDCISMVRIDR 134

Query: 63  LE 64
             
Sbjct: 135 EW 136


>gi|307721742|ref|YP_003892882.1| NADH dehydrogenase subunit I [Sulfurimonas autotrophica DSM 16294]
 gi|306979835|gb|ADN09870.1| NADH dehydrogenase subunit I [Sulfurimonas autotrophica DSM 16294]
          Length = 205

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 12/68 (17%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDA 54
            TE CI C    C ++C  DC                   I+   CI CG C   CP  A
Sbjct: 89  DTERCIGC--GLCEKICISDCIRIDTRIDENSRKEVSEYTINLGRCIFCGYCAEVCPELA 146

Query: 55  IKPDTEPG 62
           I    E  
Sbjct: 147 ITHGGEYE 154


>gi|300245649|gb|ADJ93882.1| putative benzylsuccinate synthase BssD [Clostridia bacterium
          enrichment culture clone BF]
          Length = 312

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C    C++VC      +    +      CI CG C   CP  A
Sbjct: 53 DKCTGC--GACIQVCSNGACRQEGESIIFERSLCIKCGRCVEACPASA 98


>gi|288574136|ref|ZP_06392493.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569877|gb|EFC91434.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 281

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           M     + C  C    C + C  +   + G+    ++   C  CGVC   CP  AI
Sbjct: 59  MPVFDEKLCKRC--GLCAKECRFNALVQFGDLMPRLNEGLCHGCGVCSMVCPHGAI 112


>gi|89900454|ref|YP_522925.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89345191|gb|ABD69394.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
          T118]
          Length = 89

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP +  Y G     I P +C +C        C   CPV  
Sbjct: 1  MALIITDECINCD--VCEPECPNEAIYLGVEIYQIDPHKCTECVGHFDEPQCVQVCPVAC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPID 62


>gi|16761464|ref|NP_457081.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765870|ref|NP_461485.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29140839|ref|NP_804181.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181114|ref|YP_217531.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167549421|ref|ZP_02343180.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992677|ref|ZP_02573773.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232125|ref|ZP_02657183.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238290|ref|ZP_02663348.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168243336|ref|ZP_02668268.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168466692|ref|ZP_02700546.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821468|ref|ZP_02833468.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194444809|ref|YP_002041812.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449446|ref|YP_002046611.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471798|ref|ZP_03077782.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735811|ref|YP_002115613.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249765|ref|YP_002147505.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263863|ref|ZP_03163937.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244708|ref|YP_002216616.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388883|ref|ZP_03215495.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204929566|ref|ZP_03220640.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205353648|ref|YP_002227449.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857958|ref|YP_002244609.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213163624|ref|ZP_03349334.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425304|ref|ZP_03358054.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213583918|ref|ZP_03365744.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213618813|ref|ZP_03372639.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646418|ref|ZP_03376471.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|224582910|ref|YP_002636708.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912671|ref|ZP_04656508.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289825397|ref|ZP_06544634.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|60391778|sp|P0A1Y2|ASRC_SALTY RecName: Full=Anaerobic sulfite reductase subunit C
 gi|60391779|sp|P0A1Y3|ASRC_SALTI RecName: Full=Anaerobic sulfite reductase subunit C
 gi|25387614|pir||AE0825 anaerobic sulfite reductase chain C (EC 1.8.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16421096|gb|AAL21444.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503764|emb|CAD02753.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136464|gb|AAO68030.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62128747|gb|AAX66450.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194403472|gb|ACF63694.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407750|gb|ACF67969.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458162|gb|EDX47001.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711313|gb|ACF90534.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630754|gb|EDX49346.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213468|gb|ACH50865.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197242118|gb|EDY24738.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288804|gb|EDY28177.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197939224|gb|ACH76557.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605981|gb|EDZ04526.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204321285|gb|EDZ06485.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205273429|emb|CAR38405.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325275|gb|EDZ13114.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329116|gb|EDZ15880.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333579|gb|EDZ20343.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337685|gb|EDZ24449.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205341941|gb|EDZ28705.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206709761|emb|CAR34113.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224467437|gb|ACN45267.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247746|emb|CBG25574.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994674|gb|ACY89559.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159099|emb|CBW18613.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913539|dbj|BAJ37513.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087048|emb|CBY96817.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222746|gb|EFX47817.1| Anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613320|gb|EFY10262.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620476|gb|EFY17341.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625056|gb|EFY21885.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629500|gb|EFY26276.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633887|gb|EFY30626.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635493|gb|EFY32204.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639831|gb|EFY36510.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644283|gb|EFY40827.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652250|gb|EFY48607.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654842|gb|EFY51159.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658230|gb|EFY54496.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322669679|gb|EFY65825.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673314|gb|EFY69419.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674897|gb|EFY70984.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682920|gb|EFY78938.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685581|gb|EFY81576.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715604|gb|EFZ07175.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130880|gb|ADX18310.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194692|gb|EFZ79882.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200376|gb|EFZ85457.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201276|gb|EFZ86343.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208346|gb|EFZ93286.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211578|gb|EFZ96416.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216010|gb|EGA00742.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221917|gb|EGA06311.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225602|gb|EGA09829.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229319|gb|EGA13443.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235366|gb|EGA19450.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237448|gb|EGA21511.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245203|gb|EGA29204.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248777|gb|EGA32704.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254043|gb|EGA37864.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254908|gb|EGA38700.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262013|gb|EGA45578.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267797|gb|EGA51278.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269644|gb|EGA53096.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624371|gb|EGE30716.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628750|gb|EGE35093.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989477|gb|AEF08460.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 337

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C    CV+ C    V C              CI CG C   CP  A +   +   
Sbjct: 178 DRCIGC--GACVKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLAWQRKPDQLW 235

Query: 64  E 64
           +
Sbjct: 236 Q 236


>gi|113969230|ref|YP_733023.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113883914|gb|ABI37966.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 476

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C     K D +  L  ++ 
Sbjct: 276 CVDCNL--CVEVCPTGIDIRQGLQY-----ECINCGACVDACNETMQKFDYKQNLISYVS 328

Query: 69  INS 71
            N 
Sbjct: 329 ENE 331


>gi|325528986|gb|EGD06007.1| ferredoxin [Burkholderia sp. TJI49]
          Length = 167

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD           I    C  C +C P CPVD I  
Sbjct: 80  AFIDESLCIGC--TLCMQACPVDAIVGAPKQMHTIVESLCTGCDLCVPPCPVDCIAM 134


>gi|320159713|ref|YP_004172937.1| dihydroorotate dehydrogenase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319993566|dbj|BAJ62337.1| dihydroorotate dehydrogenase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 375

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
             V    C  C    C  VC  D      +    +  + C  CG+C   CP DA+
Sbjct: 314 AVVDEARCKGC--GVCERVCQYDALRAPQKQVAQVDAELCAACGLCVSVCPHDAL 366


>gi|291530236|emb|CBK95821.1| Iron only hydrogenase large subunit, C-terminal domain
          [Eubacterium siraeum 70/3]
          Length = 560

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 1  MTYV--VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y+     NC  C    C+  CPV      +    I  DECI CG+C   CP +A
Sbjct: 1  MSYLRLKKSNCKNCYK--CIRHCPVKSIRFSDGQANIVEDECILCGMCFVACPQNA 54


>gi|256003926|ref|ZP_05428912.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium thermocellum DSM 2360]
 gi|255992054|gb|EEU02150.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium thermocellum DSM 2360]
          Length = 601

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V E C  CK   C+ + CP          + I+   C+ C +C   C  DAI
Sbjct: 548 IVIEKCRKCKM--CMRIGCPAIVDMGDH--IEINDALCVGCRLCSKVCNFDAI 596


>gi|253572642|ref|ZP_04850043.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298386288|ref|ZP_06995844.1| ferredoxin [Bacteroides sp. 1_1_14]
 gi|251837774|gb|EES65864.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298260665|gb|EFI03533.1| ferredoxin [Bacteroides sp. 1_1_14]
          Length = 319

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   CP     +G+     + ++CI C  C   C   A K DT 
Sbjct: 252 CTHC--GICAARCPAGAITKGDELNT-NAEKCIKCCACVKACANKARKYDTP 300


>gi|217032331|ref|ZP_03437827.1| hypothetical protein HPB128_132g29 [Helicobacter pylori B128]
 gi|298735708|ref|YP_003728233.1| NADH dehydrogenase I subunit I [Helicobacter pylori B8]
 gi|216945997|gb|EEC24611.1| hypothetical protein HPB128_132g29 [Helicobacter pylori B128]
 gi|298354897|emb|CBI65769.1| NADH dehydrogenase I chain I [Helicobacter pylori B8]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|169628027|ref|YP_001701676.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          abscessus ATCC 19977]
 gi|169239994|emb|CAM61022.1| Putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          abscessus]
          Length = 539

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEY 73
          C+   P +  +     L I    C+DCG C   CPVDAIKPD+  +     +L+INSE+
Sbjct: 3  CIHPTPDEPDFLKAEMLHIDASACVDCGACVAACPVDAIKPDSTLKEEQLPFLRINSEF 61



 Score = 36.9 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG 29
          M ++    C+ C    CV  CPVD     
Sbjct: 18 MLHIDASACVDC--GACVAACPVDAIKPD 44


>gi|154151233|ref|YP_001404851.1| glutamate synthase (NADPH) [Candidatus Methanoregula boonei 6A8]
 gi|153999785|gb|ABS56208.1| Glutamate synthase (NADPH) [Methanoregula boonei 6A8]
          Length = 503

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T  C+ C    C+E C    +    + + ++   C+ C  C   CP DAI    +P  
Sbjct: 15 DTGQCMNC--GRCIENCSYGVYRREGDRIVVNSRNCVACHRCTAFCPRDAISIYEKPTD 71


>gi|152990046|ref|YP_001355768.1| NADH dehydrogenase subunit I [Nitratiruptor sp. SB155-2]
 gi|151421907|dbj|BAF69411.1| NADH-quinone oxidoreductase, chain I [Nitratiruptor sp. SB155-2]
          Length = 203

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 22/107 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C                   I+   CI CG C   CP  AI
Sbjct: 90  NERCIGC--GLCEKICISNCIRIDTKVDENGRKIPTEYTINFGRCIFCGYCAEVCPELAI 147

Query: 56  KP----DTEPGLELWLKINSEYATQWPNITTKKE------SLPSAAK 92
                 +          +  +  T    +  +KE        P+A K
Sbjct: 148 VHGQDYENASEQRAHFALKEDMLTPLDKLKEQKEFPGFGAPTPAADK 194


>gi|171320168|ref|ZP_02909230.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria MEX-5]
 gi|172061765|ref|YP_001809417.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia ambifaria MC40-6]
 gi|171094582|gb|EDT39634.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria MEX-5]
 gi|171994282|gb|ACB65201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria MC40-6]
          Length = 88

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MSLMITDECINCD--VCEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHDESHAQLMEKY 76


>gi|70733154|ref|YP_262927.1| ferredoxin, 4Fe-4S [Pseudomonas fluorescens Pf-5]
 gi|68347453|gb|AAY95059.1| ferredoxin, 4Fe-4S [Pseudomonas fluorescens Pf-5]
          Length = 83

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T++CI C    C   CP     +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCD--VCEPECPNAAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 IPLD-EARPETEEELMAKY 76


>gi|114565055|ref|YP_752569.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114336348|gb|ABI73730.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 487

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI+CG C   C     K    P L  +  
Sbjct: 273 CVDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDACNQTMEKFGYAPNLISFTS 325

Query: 69  INS 71
            N+
Sbjct: 326 ENA 328


>gi|325280681|ref|YP_004253223.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Odoribacter
           splanchnicus DSM 20712]
 gi|324312490|gb|ADY33043.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Odoribacter
           splanchnicus DSM 20712]
          Length = 273

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V T+ CI C+   C +VCP+                CI C  C  +CPV A
Sbjct: 199 VTTDACIDCR--RCAKVCPMGAIRLDHPSEV--SGICIKCNACVKQCPVHA 245


>gi|300727612|ref|ZP_07061001.1| ferredoxin [Prevotella bryantii B14]
 gi|299775132|gb|EFI71735.1| ferredoxin [Prevotella bryantii B14]
          Length = 305

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T  CI C    C +VC  +      N   I  ++C  C  C  ECP  AI     P  + 
Sbjct: 221 TAACIGC--GKCQKVCKFEAITIENNLSYIDFNKCRMCTKCVDECPTGAIIKVNFPVKKA 278



 Score = 33.8 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 21/82 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--------IHPDE-----------CIDCG 44
           V  E C  C    C + CP       +            ++ D+           CI CG
Sbjct: 171 VDEEKCTSC--GACTKACPRHIIELRKKGPKGRRVYVQCVNKDKGAVARKSCTAACIGCG 228

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
            C+  C  +AI  +       +
Sbjct: 229 KCQKVCKFEAITIENNLSYIDF 250


>gi|260642559|ref|ZP_05859442.1| putative ferredoxin [Bacteroides finegoldii DSM 17565]
 gi|260621575|gb|EEX44446.1| putative ferredoxin [Bacteroides finegoldii DSM 17565]
          Length = 118

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    CV  CPV    +G+        +CI C  C   C   A   DT 
Sbjct: 51 CTHC--GLCVTRCPVGAITKGDELHT-DETKCIKCCACVKACTKKARIYDTP 99


>gi|224372598|ref|YP_002606970.1| periplasmic nitrate reductase, NapH subunit [Nautilia profundicola
           AmH]
 gi|223588366|gb|ACM92102.1| periplasmic nitrate reductase, NapH subunit [Nautilia profundicola
           AmH]
          Length = 281

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y   +NC  C   +C+ +CP   V      +    I+  EC +CG C   C  +A+    
Sbjct: 208 YHNKDNCTAC--GECLNICPETQVLTPVIDKKSDYINGIECTNCGRCIEVCNDNALNFSI 265

Query: 60  EPGLELWLKINSE 72
              +    + N +
Sbjct: 266 RKYINSKGENNEK 278


>gi|91065090|gb|ABE03922.1| NuoI [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 145

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C    C   CP    Y                   +   I+   CI CG+CE  C
Sbjct: 52  EKCIGCSL--CAAACPAYAIYVEAAENDPEAPVSAGERYASIYEINMLRCIFCGLCEEAC 109

Query: 51  PVDAIKPDTEPGLELW 66
           P  AI    E  L  +
Sbjct: 110 PTGAIVLGHEFELADF 125


>gi|332295890|ref|YP_004437813.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178993|gb|AEE14682.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 137

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCP +     ++    +  ++CI C  C   C V+A+  D+E
Sbjct: 52  CRACFDPPCAAVCPTNALEVRKDGGVNLISEKCIGCKNCVEACTVNAVFWDSE 104



 Score = 38.0 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++E CI CK+  CVE C V+  +         P+ C  CG C   CP   +  + E
Sbjct: 80  ISEKCIGCKN--CVEACTVNAVFWDSETNK--PNICTYCGFCAMNCPHHVLYFNKE 131


>gi|304312861|ref|YP_003812459.1| hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1]
 gi|301798594|emb|CBL46824.1| Hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1]
          Length = 296

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C  T C++ CPVD           +  D+C  C +C   CPVD I     
Sbjct: 86  AVIREDECIGC--TKCIQACPVDAILGAAQLMHTVIGDQCTGCNLCVEPCPVDCIDMVAM 143

Query: 61  PG 62
           P 
Sbjct: 144 PE 145



 Score = 33.8 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CVE CPVDC   
Sbjct: 115 MHTVIGDQCTGCNL--CVEPCPVDCIDM 140


>gi|226940150|ref|YP_002795223.1| RnfB2 [Laribacter hongkongensis HLHK9]
 gi|226715076|gb|ACO74214.1| RnfB2 [Laribacter hongkongensis HLHK9]
          Length = 192

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C++ CPVD      +    I   EC  C +C   CPVD I+ +  
Sbjct: 109 AVIDETTCIGC--TLCIQACPVDAILGSAKQMHTILSSECTGCELCLEPCPVDCIRMEPI 166

Query: 61  P 61
           P
Sbjct: 167 P 167


>gi|168185418|ref|ZP_02620053.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum C str. Eklund]
 gi|169296260|gb|EDS78393.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum C str. Eklund]
          Length = 285

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E C  C    C +VC  D     +    I+P  C  CG C   CP +AI    E   
Sbjct: 62  INEELCKNC--GKCKKVCRFDAISNNK----INPYSCEGCGTCILVCPSNAITLKEEKSA 115

Query: 64  ELWL 67
           E+++
Sbjct: 116 EIYI 119


>gi|149378171|ref|ZP_01895888.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter algicola DG893]
 gi|149357533|gb|EDM46038.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter algicola DG893]
          Length = 192

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
             +  + CI C  T C++ CPVD      ++   +   EC  C +C   CPVD I   T 
Sbjct: 109 AVIREDECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVEPCPVDCIDMITI 166

Query: 60  EPGLELW 66
           EP +  W
Sbjct: 167 EPDIRSW 173


>gi|317011468|gb|ADU85215.1| NADH dehydrogenase subunit I [Helicobacter pylori SouthAfrica7]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|291557048|emb|CBL34165.1| Iron only hydrogenase large subunit, C-terminal domain
          [Eubacterium siraeum V10Sc8a]
          Length = 560

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 1  MTYV--VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y+     NC  C    C+  CPV      +    I  DECI CG+C   CP +A
Sbjct: 1  MSYLRLKKSNCKNCYK--CIRHCPVKSIRFSDGQANIVEDECILCGMCFVACPQNA 54


>gi|291528500|emb|CBK94086.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Eubacterium rectale M104/1]
          Length = 289

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C        +  + I  D+C +C  C   CP DA
Sbjct: 165 DDCIQC--GVCVKACREGALSMEDGRIVIDRDKCNNCARCVKSCPTDA 210


>gi|291525395|emb|CBK90982.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Eubacterium rectale DSM 17629]
          Length = 289

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C        +  + I  D+C +C  C   CP DA
Sbjct: 165 DDCIQC--GVCVKACREGALSMEDGRIVIDRDKCNNCARCVKSCPTDA 210


>gi|290489762|gb|ADD31288.1| NADH-plastoquinone oxidoreductase subunit I protein [Meliosma aff.
           cuneifolia Moore 333]
          Length = 180

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|255101373|ref|ZP_05330350.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-63q42]
          Length = 323

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    CV+ C    V       N +    D+CI CG C   CP +A   D +  
Sbjct: 171 KDRCVNC--GACVKKCSKISVGALKTENNKVVRDKDKCIGCGECVLNCPTNAWTRDEKKY 228

Query: 63  LE 64
             
Sbjct: 229 YR 230



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA 34
             + CI C   +CV  CP + +   E    
Sbjct: 202 DKDKCIGC--GECVLNCPTNAWTRDEKKYY 229


>gi|197285067|ref|YP_002150939.1| ferredoxin [Proteus mirabilis HI4320]
 gi|227355471|ref|ZP_03839867.1| polyferredoxin [Proteus mirabilis ATCC 29906]
 gi|194682554|emb|CAR42571.1| putative ferredoxin [Proteus mirabilis HI4320]
 gi|227164458|gb|EEI49342.1| polyferredoxin [Proteus mirabilis ATCC 29906]
          Length = 294

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 4  VVTENCIL-------CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++ + C+        C    C +VCPVD        + I  + C  CG C   CPVDAI+
Sbjct: 14 IINDKCVRKRLKQSLCD--SCSKVCPVDAITFSLLNVEIDNERCFQCGNCLFTCPVDAIE 71

Query: 57 PDTE 60
            + 
Sbjct: 72 NISP 75



 Score = 40.7 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             E+CILC    C +VC        +N   I    C  C  C+  C   +I
Sbjct: 195 DKESCILCS--ACAKVCDEGAITIEDNRFIIDEKRCTGCMNCQVVCFPKSI 243


>gi|74317665|ref|YP_315405.1| heterodisulfide reductase subunit A [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057160|gb|AAZ97600.1| heterodisulfide reductase, subunit A [Thiobacillus denitrificans
           ATCC 25259]
          Length = 752

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD-----TE 60
           E C  CK   C   CP     E E  F   +   C  CG C   CPV  I  +     T 
Sbjct: 544 EGCTQCK--RCTVECPFGAIDEDEKRFPVFNESRCRRCGTCMGACPVRVISFENYSVNTV 601

Query: 61  PGLELWLKINSEYAT 75
                 + I  E++ 
Sbjct: 602 GAQIKAVDIPDEFSE 616


>gi|328860549|gb|EGG09655.1| hypothetical protein MELLADRAFT_29188 [Melampsora larici-populina
           98AG31]
          Length = 150

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      +   +CI CG C+  CPVDAI
Sbjct: 59  EERCIACKL--CEAICPAQAITIESETRLDGARRTTRYDLDMTKCIYCGFCQEACPVDAI 116

Query: 56  KPDTEPGLELWLKINSEYATQW--PNITTKKESLPSAAKMDGV 96
                         N+EY+T+     +  K++ L +  +M+  
Sbjct: 117 VESQ----------NTEYSTETREELLYNKEKLLANGDRMEAE 149


>gi|326796151|ref|YP_004313971.1| electron transport complex protein rnfB [Marinomonas mediterranea
           MMB-1]
 gi|326546915|gb|ADZ92135.1| Electron transport complex protein rnfB [Marinomonas mediterranea
           MMB-1]
          Length = 198

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 108 AVIREDECIGC--TKCIQACPVDAILGAAKQMHTVIADECTGCDLCVEPCPVDCIDM 162



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL 33
           M  V+ + C  C    CVE CPVDC    E  +
Sbjct: 137 MHTVIADECTGCDL--CVEPCPVDCIDMVEVGV 167


>gi|281354947|ref|ZP_06241441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
 gi|281317827|gb|EFB01847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
          Length = 56

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V T+ C  C+   CV  CPV      +    ++  +CI+CG C  ECP +AI
Sbjct: 5  VNTDACSGCE--TCVGSCPVSAISMADGKAVVNEADCIECGACVGECPCEAI 54


>gi|239904831|ref|YP_002951569.1| heterodisulfide reductase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794694|dbj|BAH73683.1| heterodisulfide reductase subunit A [Desulfovibrio magneticus RS-1]
          Length = 652

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C+ C    C+  CP     E    G+    +    C  CG+C   CP  AI+   
Sbjct: 579 VDIKRCVGC--GKCIMTCPFKAIKEVEFRGQKKAEVIETVCQGCGICTSTCPQGAIQLSH 636

Query: 60  EPGLELWLKINS 71
               ++  ++N+
Sbjct: 637 FTDNQILAEVNA 648



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 24/85 (28%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECID 42
           TYV  E C  C    C+E CP                               I P  C  
Sbjct: 235 TYVDWELCTGC--GACMEKCPSKKNPDAFNEKIGPCTSINIPFPQAIPKKAVIDPSTCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AI+ D    
Sbjct: 293 FVKGKCGVCAKVCPTKAIRYDMTDE 317


>gi|298491474|ref|YP_003721651.1| XRE family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298233392|gb|ADI64528.1| transcriptional regulator, XRE family ['Nostoc azollae' 0708]
          Length = 529

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 9/58 (15%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECP 51
          M Y +    C  C +  C   CP        +   I P  C +C        C   CP
Sbjct: 1  MPYTIPNKNCDGCDN--CRPQCPTGAIKIENDKYWIDPCLCNNCEGYYPEPQCVIACP 56


>gi|154502657|ref|ZP_02039717.1| hypothetical protein RUMGNA_00470 [Ruminococcus gnavus ATCC 29149]
 gi|210617393|ref|ZP_03291557.1| hypothetical protein CLONEX_03779 [Clostridium nexile DSM 1787]
 gi|153796540|gb|EDN78960.1| hypothetical protein RUMGNA_00470 [Ruminococcus gnavus ATCC 29149]
 gi|210149323|gb|EEA80332.1| hypothetical protein CLONEX_03779 [Clostridium nexile DSM 1787]
          Length = 295

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  E C+ C    C  VC +D           +  ECI CG C   CP DAI    
Sbjct: 235 VDHEKCVGC--QKCSRVCKMDVNVVDTP----NHPECIRCGECMKACPTDAICYHY 284


>gi|153953567|ref|YP_001394332.1| anaerobic sulfite reductase-related protein [Clostridium kluyveri
           DSM 555]
 gi|219854189|ref|YP_002471311.1| hypothetical protein CKR_0846 [Clostridium kluyveri NBRC 12016]
 gi|146346448|gb|EDK32984.1| Anaerobic sulfite reductase-related protein [Clostridium kluyveri
           DSM 555]
 gi|219567913|dbj|BAH05897.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            CI C    CV+ C          G   +    D+CI CG C  +CP  A     E   +
Sbjct: 85  RCIGC--QACVKNCKKRSTGALTFGSFKVVRDHDKCIGCGECVGKCPTGAWTRSDEKYFK 142

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
             L I      + P +          AK    +
Sbjct: 143 --LVIMGRTGKKNPRLAQ------DFAKWIDEE 167


>gi|58699331|ref|ZP_00374109.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534154|gb|EAL58375.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 155

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 20/100 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 53  EERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 110

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                P  E   +   E       +  K++ L +    + 
Sbjct: 111 V--EGPNFEFATETREEL------MYNKEKLLRNGEVWED 142


>gi|332289766|ref|YP_004420618.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
 gi|330432662|gb|AEC17721.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
          Length = 224

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    +       + ++ D C+ C  C   CP  
Sbjct: 92  SCQHCSNAPCVHVCPTGASFIDAKTGIVDVNKDLCVGCQYCIAVCPYR 139


>gi|329914674|ref|ZP_08276144.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545089|gb|EGF30386.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 547

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           I C  T C++VC  D      N + + P+ C+ CG C   CP  A+        +
Sbjct: 169 IGC--TSCIDVCSADAIRHDGNLVKVVPNLCVGCGACTTVCPSGALTYAYPRAPD 221



 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 5/47 (10%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          +  E C  C    CV+ CP       +    I  ++C     C   C
Sbjct: 43 IDLEICTRCN--ACVDACPEQAI---DLMYQIDLNKCTSHSDCVKAC 84



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           + T  C LC    CV  CP     +      L      C+ CG+CE  CP +AI
Sbjct: 410 INTSACTLC--MSCVGACPESALMDNADLPQLRFVEKNCVQCGLCETTCPENAI 461


>gi|253570623|ref|ZP_04848031.1| H2-dehydrogenase [Bacteroides sp. 1_1_6]
 gi|251839572|gb|EES67655.1| H2-dehydrogenase [Bacteroides sp. 1_1_6]
          Length = 387

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 8  NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          NC  C    C EVCP  C       +G  +  +    CIDCG CE  CP        +  
Sbjct: 11 NCSGCN--ACAEVCPKHCIEMVPDKKGFFYPKVDAVTCIDCGACEKVCPFQDGNIKLDTP 68

Query: 63 LELWLKINSE 72
          L  +   N +
Sbjct: 69 LTAYAAWNKD 78


>gi|197335123|ref|YP_002156163.1| formate hydrogenlyase subunit 6 [Vibrio fischeri MJ11]
 gi|197316613|gb|ACH66060.1| formate hydrogenlyase subunit 6 [Vibrio fischeri MJ11]
          Length = 558

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 10  ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C+   CV+ CP          +  + + I+P  C   G C   CP +AI        +
Sbjct: 187 KGCE--RCVDACPAGALTSEGSDQTGHHIQINPYLCQGVGTCATACPTEAISYALPEAEK 244



 Score = 38.0 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T++C LC    CV VCP    +       L     +C+ CG+C   CP   +    +   
Sbjct: 422 TKDCTLCMG--CVAVCPTRALHSDPDSPTLKFIEQDCVQCGLCVSACPEKVLSMKVQMNW 479

Query: 64  EL 65
             
Sbjct: 480 NQ 481


>gi|200388028|ref|ZP_03214640.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|199605126|gb|EDZ03671.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|168261433|ref|ZP_02683406.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|205349505|gb|EDZ36136.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|194445567|ref|YP_002041785.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194404230|gb|ACF64452.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 40.4 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIVAVRCTGCGGCAAVCPHQAL 237


>gi|160872682|ref|ZP_02062814.1| iron-sulfur cluster binding protein [Rickettsiella grylli]
 gi|159121481|gb|EDP46819.1| iron-sulfur cluster binding protein [Rickettsiella grylli]
          Length = 217

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           MT  + E+ CI C  T C++ CPVD      +    +   EC  CG+C   CPVD I
Sbjct: 88  MTARIRESECIGC--TKCIQACPVDAIVGAAKQLHVVLKQECTGCGLCIAPCPVDCI 142


>gi|46578913|ref|YP_009721.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448325|gb|AAS94980.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 501

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 36/91 (39%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY----------------------------------EGE 30
             + C  C    CV  CPVD  +                                  +  
Sbjct: 339 DADACTGC--GLCVRACPVDALHVVRKDGQRTASNETVDARGDVPDDEAASSTARRGKAR 396

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             L +    C+ CGVC   CP  A++ +  P
Sbjct: 397 RRLEVDTSVCLGCGVCALRCPTGALRLEERP 427


>gi|20807184|ref|NP_622355.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|20515685|gb|AAM23959.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
          Length = 581

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  CPV           +    CI CG C  ECP +A
Sbjct: 16 NCRNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCVIECPQNA 60


>gi|313679593|ref|YP_004057332.1| NADH dehydrogenase subunit i [Oceanithermus profundus DSM 14977]
 gi|313152308|gb|ADR36159.1| NADH dehydrogenase subunit I [Oceanithermus profundus DSM 14977]
          Length = 176

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 18/77 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------------FLAIHPDECIDCGVCEPEC 50
           E CI C    C   CP    Y   +                   I+   CI CG+CE  C
Sbjct: 51  EKCIGCSL--CAAACPAYAIYVEPDENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAIKPDTEPGLELWL 67
           P  AI    E  L  ++
Sbjct: 109 PTGAIVLGNEFELADYV 125


>gi|291522103|emb|CBK80396.1| electron transport complex, RnfABCDGE type, B subunit [Coprococcus
           catus GD/7]
          Length = 256

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V   +CI C    CV+ C  D  +      AI  D+C +CG C   CP  AI 
Sbjct: 206 VCKTSCIGC--MKCVKTCEHDAIHVTNFNAAIDYDKCTNCGACAEVCPKHAIC 256



 Score = 39.2 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C  H DC  VCP       +    I  D+C+ CG+C   CP   I           L +
Sbjct: 136 GCLGHGDCAAVCPEKAIIVHDGLAMIDQDKCVGCGICVKTCPKHVIALVPFEKKHHVLCV 195

Query: 70  NSE 72
           N++
Sbjct: 196 NTD 198


>gi|260493921|ref|ZP_05814052.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_33]
 gi|260198067|gb|EEW95583.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_33]
          Length = 324

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A     +   
Sbjct: 172 DRCVAC--GACVKKCKKLSVEALKMENNKIVRDANKCIGCGECVINCPMSAWTRSPKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
           +L +     K N   A  W
Sbjct: 230 KLMIMGRTGKKNPRLAEDW 248


>gi|256752226|ref|ZP_05493090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748878|gb|EEU61918.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 149

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV+ C      +      +    D+C+ C  C   C   AI  D
Sbjct: 60  CRHCDDAPCVKSCITGAMQKDPLTGVVTCDTDKCVGCWTCVLVCEFGAIIRD 111


>gi|225405724|ref|ZP_03760913.1| hypothetical protein CLOSTASPAR_04945 [Clostridium asparagiforme
          DSM 15981]
 gi|225042748|gb|EEG52994.1| hypothetical protein CLOSTASPAR_04945 [Clostridium asparagiforme
          DSM 15981]
          Length = 641

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  C V      +    I PD+C+ CG C   CP  A
Sbjct: 12 KCKHCYK--CVRYCEVKAIQVKDERAVIMPDKCVLCGHCLRICPQSA 56


>gi|197248415|ref|YP_002147480.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197212118|gb|ACH49515.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|56412594|ref|YP_149669.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|197361529|ref|YP_002141165.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|56126851|gb|AAV76357.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|197093005|emb|CAR58438.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 39.2 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     ++ L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDDTLTIAAAHCTGCGGCAAVCPHQAL 237


>gi|15644047|ref|NP_229096.1| iron-sulfur cluster-binding protein, putative [Thermotoga maritima
           MSB8]
 gi|170289310|ref|YP_001739548.1| cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2]
 gi|4981850|gb|AAD36366.1|AE001784_8 iron-sulfur cluster-binding protein, putative [Thermotoga maritima
           MSB8]
 gi|170176813|gb|ACB09865.1| Cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2]
          Length = 283

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 13/109 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V    CI C   +C   C         +   +    C  CG C   CPV+AI    + 
Sbjct: 63  PVVDNSVCIRC--GECASTCQFGAISVFPSGTFVFESLCHGCGACSIMCPVNAISERPKE 120

Query: 62  GLELW---LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             ++       N  +     NI  +            V +K +K+    
Sbjct: 121 IGKIRFGTADGNISFGMGILNIGERTGVP--------VIRKLKKHIDEK 161


>gi|121604997|ref|YP_982326.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120593966|gb|ABM37405.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 482

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCP                 CI C  C   C     K +   GL  +  
Sbjct: 271 CIDC--TLCVQVCPTGIDIRDGL-----QSNCIGCAACIDVCDSVMDKMNYPRGLIRYST 323

Query: 69  INSEYATQW 77
            N+  A  W
Sbjct: 324 ENA-LANGW 331


>gi|167037062|ref|YP_001664640.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039776|ref|YP_001662761.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514]
 gi|300914980|ref|ZP_07132295.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561]
 gi|307724900|ref|YP_003904651.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513]
 gi|320115477|ref|YP_004185636.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854016|gb|ABY92425.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514]
 gi|166855896|gb|ABY94304.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300888704|gb|EFK83851.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561]
 gi|307581961|gb|ADN55360.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513]
 gi|319928568|gb|ADV79253.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 282

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + ++ C LC   +CV+ C      +    + +    C  CG C   CP DAI    +P
Sbjct: 64  INSDKCTLC--GECVKACRFGALTKLIKKILVFDHLCHSCGACFEMCPYDAIVEKYKP 119


>gi|312880828|ref|ZP_07740628.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784119|gb|EFQ24517.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 590

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 4   VVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V    C+ CK   C+   CP     +G   + I P +C  CG+C   CP  AI  + E
Sbjct: 534 VDQSTCVKCK--SCLRPGCPGIAMKDG--VIVIDPAQCNGCGLCMQLCPKQAISREGE 587


>gi|307353409|ref|YP_003894460.1| glutamate synthase [Methanoplanus petrolearius DSM 11571]
 gi|307156642|gb|ADN36022.1| Glutamate synthase (NADPH) [Methanoplanus petrolearius DSM 11571]
          Length = 503

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  + C+LC+   C++ C    F      +     +C  C  C   CP DAI    +P  
Sbjct: 14 IDQDECMLCE--RCIDNCSYGVFRREGQKIVADSRKCTACHRCIAMCPRDAITLIEKPND 71


>gi|282900395|ref|ZP_06308345.1| PatB (Transcriptional regulator) [Cylindrospermopsis raciborskii
          CS-505]
 gi|281194708|gb|EFA69655.1| PatB (Transcriptional regulator) [Cylindrospermopsis raciborskii
          CS-505]
          Length = 528

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 9/60 (15%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVD 53
          M Y++    C  C    C   CP        N   I P  C +C        C   CP  
Sbjct: 1  MPYIIPNKNCNRCDK--CRPQCPTGAIKIENNEYWIDPCLCNNCEGYYPEPQCVIACPTQ 58


>gi|258627118|ref|ZP_05721914.1| electron transport complex protein RnfB [Vibrio mimicus VM603]
 gi|258580636|gb|EEW05589.1| electron transport complex protein RnfB [Vibrio mimicus VM603]
          Length = 195

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G      +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|289579324|ref|YP_003477951.1| PAS/PAC sensor protein [Thermoanaerobacter italicus Ab9]
 gi|289529037|gb|ADD03389.1| putative PAS/PAC sensor protein [Thermoanaerobacter italicus Ab9]
          Length = 576

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  CPV           +    CI CG C  ECP +A
Sbjct: 12 NCKNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCVIECPQNA 56


>gi|218782911|ref|YP_002434229.1| ferredoxin [Desulfatibacillum alkenivorans AK-01]
 gi|218764295|gb|ACL06761.1| Heterodisulfide reductase, subunit A-like protein [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1076

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 4    VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            V ++ C  CK   CV +CP     F E      I    C  CG+C   C   AI      
Sbjct: 1008 VDSQFCSGCK--VCVSICPYSAPLFNEKTGKAEIQSTLCKGCGLCVASCRSGAIHLAGFD 1065

Query: 62   GLELWLKINS 71
              +++  I++
Sbjct: 1066 TSQIFSMIDA 1075


>gi|213408048|ref|XP_002174795.1| translation initiation factor RLI1 [Schizosaccharomyces japonicus
          yFS275]
 gi|212002842|gb|EEB08502.1| translation initiation factor RLI1 [Schizosaccharomyces japonicus
          yFS275]
          Length = 594

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV             +    I    CI CG+C  +CP  A
Sbjct: 12 VSSDKCRPKKCR-QECRKSCPVVRTGKLCIEVTPNDRIAFISETLCIGCGICVKKCPFSA 70

Query: 55 IK 56
          I 
Sbjct: 71 IN 72


>gi|168238265|ref|ZP_02663323.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|194738104|ref|YP_002115589.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|194713606|gb|ACF92827.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|197288840|gb|EDY28213.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|123967714|ref|YP_001008572.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. AS9601]
 gi|156632626|sp|A2BNV4|NDHI_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|123197824|gb|ABM69465.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           AS9601]
          Length = 208

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELWLKINSEY 73
               E  L  + + N  +
Sbjct: 120 SMTEEYELATFDRHNLNF 137


>gi|91773397|ref|YP_566089.1| hypothetical protein Mbur_1428 [Methanococcoides burtonii DSM 6242]
 gi|91712412|gb|ABE52339.1| 4Fe-4S cluster-binding protein [Methanococcoides burtonii DSM 6242]
          Length = 379

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++ T +C LC    CV  C      + +  L I+ ++CI C  C   CP  A++  +  
Sbjct: 310 PFINTSSCTLC--GSCVLNCSPKAIEQEDGKLQINDEKCILCYCCRELCPSGAVEMKSSL 367

Query: 62  GLELWLKI-NSE 72
             ++ LKI N +
Sbjct: 368 FAKVLLKIRNRD 379


>gi|56412572|ref|YP_149647.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361507|ref|YP_002141143.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126829|gb|AAV76335.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092983|emb|CAR58415.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C    CV+ C    V C              CI CG C   CP  A +   +   
Sbjct: 178 DRCIGC--GACVKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLAWQRKPDQLW 235

Query: 64  E 64
           +
Sbjct: 236 Q 236


>gi|313683611|ref|YP_004061349.1| respiratory nitrate reductase beta subunit [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156471|gb|ADR35149.1| respiratory nitrate reductase beta subunit [Sulfuricurvum kujiense
           DSM 16994]
          Length = 365

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP D     E +  + +  D C     C   CP   I  
Sbjct: 135 CNHCTNPGCLSACPRDAIFKREEDGVVLVDLDRCQGYRYCIAGCPYKKIYF 185


>gi|296387990|ref|ZP_06877465.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PAb1]
          Length = 188

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD-T 59
            Y+    CI C  T C++ CPVD           +  DEC  C +C   CPVD I+   T
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMRAT 163

Query: 60  EPGLELW 66
              +  W
Sbjct: 164 PDDVRHW 170


>gi|294673994|ref|YP_003574610.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
 gi|294474248|gb|ADE83637.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
          Length = 274

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + CI C    C++VCPVD   +G     IH   C  C  C   CPV AI  
Sbjct: 204 VDEDVCIKC--GKCIKVCPVD-NIQGTPPEWIHNGRCTSCLACYHYCPVHAINF 254


>gi|167991837|ref|ZP_02572936.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|205329900|gb|EDZ16664.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|332989454|gb|AEF08437.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|167038058|ref|YP_001665636.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116467|ref|YP_004186626.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856892|gb|ABY95300.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929558|gb|ADV80243.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 149

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV+ C      +  +   +    D+C+ C  C   C   AI  D
Sbjct: 60  CRHCNDAPCVKSCITGAMQKDPSTGVVICDTDKCVGCWTCVLVCEFGAIIRD 111


>gi|163751796|ref|ZP_02159013.1| electron transport complex protein RnfB [Shewanella benthica KT99]
 gi|161328360|gb|EDP99520.1| electron transport complex protein RnfB [Shewanella benthica KT99]
          Length = 189

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I  
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGTGKLMHTVITDYCTGCDLCVEPCPVDCIDM 161


>gi|146280561|ref|YP_001170714.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri A1501]
 gi|145568766|gb|ABP77872.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri A1501]
          Length = 311

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + C+ C    C++ CP      +  N +   + D CI CG C   CP D I   +E   
Sbjct: 94  KDGCMHCADPGCLKACPAPGAIVKYANGIVDFNQDHCIGCGYCITGCPFD-IPRISEKDK 152

Query: 64  ELW 66
           + +
Sbjct: 153 KAY 155


>gi|118594444|ref|ZP_01551791.1| electron transport complex protein RnfB [Methylophilales bacterium
           HTCC2181]
 gi|118440222|gb|EAV46849.1| electron transport complex protein RnfB [Methylophilales bacterium
           HTCC2181]
          Length = 188

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  + CI C  T C++ CPVD      ++   I   EC  C +C P CPVD I  
Sbjct: 108 IDEDTCIGC--TLCIQACPVDAILGSAKHMHTIIEKECTGCELCLPPCPVDCIDM 160


>gi|21228649|ref|NP_634571.1| putative ferredoxin [Methanosarcina mazei Go1]
 gi|20907149|gb|AAM32243.1| putative ferredoxin [Methanosarcina mazei Go1]
          Length = 266

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+++C  C    C EVCPV       + L     +CI C  C   CP +A         +
Sbjct: 191 VSDDCSQC--GTCAEVCPVGAIDPENSNLT-DTGKCITCCACIKNCPQNARSMKPGLVKD 247

Query: 65  LWLKINSEYATQWPN 79
             +++++ Y+ +   
Sbjct: 248 ASVRLHTLYSQRKEP 262


>gi|33866803|ref|NP_898362.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 8102]
 gi|81712227|sp|Q7U403|NDHI_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|33639404|emb|CAE08788.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. WH 8102]
          Length = 215

 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|330995175|ref|ZP_08319090.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329576514|gb|EGG58023.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 273

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV +NC  C   +CV+ CP       +   A   D C  C  C   CPV     DT    
Sbjct: 200 VVNDNCYGC--GECVDWCPTGAITIADGRSATRADLCTKCCACVKFCPVGGRTFDTPYTA 257

Query: 64  E 64
            
Sbjct: 258 M 258


>gi|302335002|ref|YP_003800209.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
 gi|301318842|gb|ADK67329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
          Length = 423

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C +C    CV  CP       E     + P  C++CG C   CP  A+  +     +  L
Sbjct: 323 CTMC--GACVTACPPHACDLDERGHFSVEPAYCVNCGACATVCPEHALAMEPCDPQD--L 378

Query: 68  KINSEYATQWPNITTKK 84
            I  E A +      ++
Sbjct: 379 VIRDEEAERRRKAAERQ 395


>gi|258623674|ref|ZP_05718660.1| electron transport complex protein RnfB [Vibrio mimicus VM573]
 gi|262171979|ref|ZP_06039657.1| electron transport complex protein RnfB [Vibrio mimicus MB-451]
 gi|258584040|gb|EEW08803.1| electron transport complex protein RnfB [Vibrio mimicus VM573]
 gi|261893055|gb|EEY39041.1| electron transport complex protein RnfB [Vibrio mimicus MB-451]
          Length = 195

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G      +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|256839019|ref|ZP_05544529.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739938|gb|EEU53262.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 605

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 5  VTEN--CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +T+   C  C    C +VC           EG  +  +  ++C DCG+CE  CP      
Sbjct: 4  ITDKSKCCGCN--ACGDVCTHKAITFKTDIEGFWYPEVDKNKCTDCGLCEKVCPNL---- 57

Query: 58 DTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
           +E   +   +I   YA    NI  + +S    A
Sbjct: 58 HSEELKKNDFEIPVCYAAIHKNIEVRFDSTSGGA 91


>gi|225028680|ref|ZP_03717872.1| hypothetical protein EUBHAL_02959 [Eubacterium hallii DSM 3353]
 gi|224953990|gb|EEG35199.1| hypothetical protein EUBHAL_02959 [Eubacterium hallii DSM 3353]
          Length = 290

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C+ C    C +VC +D           +  ECI CG C   CP DAI          +
Sbjct: 238 DKCVGC--HQCTKVCKMDVDVIKSP----NHPECIRCGACMKACPKDAIHY-------QF 284

Query: 67  LKINSE 72
           +K N +
Sbjct: 285 IKFNDK 290


>gi|209694967|ref|YP_002262896.1| putative ferredoxin [Aliivibrio salmonicida LFI1238]
 gi|208008919|emb|CAQ79135.1| putative ferredoxin [Aliivibrio salmonicida LFI1238]
          Length = 558

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VT++C LC    CV VCP    +  +    L     +C+ CG+C   CP  A+    +  
Sbjct: 421 VTKDCTLCMG--CVAVCPTRALHGDQDSPTLKFIEQDCVQCGLCVNACPEKALSMKVQMN 478

Query: 63  LEL 65
              
Sbjct: 479 WNK 481



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 10  ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C+   CV+ CP          E  + + I+P  C   G C   CP +AI        +
Sbjct: 187 KGCE--RCVDACPAGALTSEGTAETGHNIQINPYLCQGVGTCSTACPTEAISYALPEAEK 244


>gi|307153500|ref|YP_003888884.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Cyanothece sp. PCC 7822]
 gi|306983728|gb|ADN15609.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7822]
          Length = 129

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC 43
          M+Y +T NCI C    C   CP     + +  L I    C DC
Sbjct: 1  MSYTITNNCIGCD--RCYVQCPTGAIQKVDGLLLIDSTLCNDC 41


>gi|167549451|ref|ZP_02343210.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|168466721|ref|ZP_02700575.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|168821497|ref|ZP_02833497.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|195630838|gb|EDX49430.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|205325401|gb|EDZ13240.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205342030|gb|EDZ28794.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|320087023|emb|CBY96792.1| NADH-quinone oxidoreductase subunits H/I NADH dehydrogenase I
          subunits H/I; NDH-1 subunit H/I [Salmonella enterica
          subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAIIGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|163802833|ref|ZP_02196722.1| electron transport complex protein RnfB [Vibrio sp. AND4]
 gi|159173373|gb|EDP58196.1| electron transport complex protein RnfB [Vibrio sp. AND4]
          Length = 197

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVSPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
           +T      W K+N+
Sbjct: 165 ETTTESWKW-KLNA 177


>gi|11497696|ref|NP_068917.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2650575|gb|AAB91155.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 136

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV+VCP       +    I+  + C+ C  C   C ++AI    +
Sbjct: 56  CRACEEPPCVQVCPTGALKPKKGGGVIYLENLCLGCHYCVEACTLNAIFVRED 108


>gi|67521596|ref|XP_658860.1| hypothetical protein AN1256.2 [Aspergillus nidulans FGSC A4]
 gi|40746693|gb|EAA65849.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 657

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C + CPV                  I    CI CG+C  +CP  A
Sbjct: 11 VSTDKCKPKKCR-QECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGA 69

Query: 55 IK 56
          I 
Sbjct: 70 IH 71


>gi|325289323|ref|YP_004265504.1| nitroreductase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964724|gb|ADY55503.1| nitroreductase [Syntrophobotulus glycolicus DSM 8271]
          Length = 276

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V  E CI C    CV+VC       G     +    CI CG C   CP  A+     P  
Sbjct: 9  VNQEQCIKC--GLCVKVCRGTLGMGGHGPEVVDDF-CIACGHCVAVCPNGALDHRLAPLE 65

Query: 64 EL 65
          + 
Sbjct: 66 KQ 67


>gi|257064392|ref|YP_003144064.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792045|gb|ACV22715.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 398

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          K   C+E C   C    +N + + P +CI CG C   CP DAI P      E
Sbjct: 32 KCMRCLESCAGGCIGYEDNEITVDPTKCIGCGTCATVCPTDAIHPKKPTDAE 83



 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + T+ C  C+   C   CP    ++     G   +     +C +C +C   CP  A++  
Sbjct: 290 INTDECRGCRM--CATFCPTGANFKFQTKSGSVGVKHRVLQCANCRLCLDICPDKALQLS 347

Query: 59  TE 60
            E
Sbjct: 348 EE 349


>gi|302873899|ref|YP_003842532.1| sulfite reductase, subunit C [Clostridium cellulovorans 743B]
 gi|307689854|ref|ZP_07632300.1| anaerobic sulfite reductase, subunit C [Clostridium cellulovorans
           743B]
 gi|302576756|gb|ADL50768.1| sulfite reductase, subunit C [Clostridium cellulovorans 743B]
          Length = 316

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            CI C    CV  C              +     +CI CG C  +CP +A         E
Sbjct: 172 RCIGC--QACVTNCKKRATGALSFENFKVVRDHSKCIGCGECVGKCPTNA----WTRSAE 225

Query: 65  LWLKI 69
            + K+
Sbjct: 226 KYYKL 230


>gi|238923284|ref|YP_002936799.1| sulfite reductase, beta subunit [Eubacterium rectale ATCC 33656]
 gi|238874958|gb|ACR74665.1| sulfite reductase, beta subunit [Eubacterium rectale ATCC 33656]
          Length = 289

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C        +  + I  D+C +C  C   CP DA
Sbjct: 165 DDCIQC--GVCVKACREGALSMEDGRIVIDRDKCNNCARCVKSCPTDA 210


>gi|198284338|ref|YP_002220659.1| NADH dehydrogenase subunit I [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218668010|ref|YP_002427000.1| NADH-quinone oxidoreductase, I subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248859|gb|ACH84452.1| NADH-quinone oxidoreductase, chain I [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520223|gb|ACK80809.1| NADH-quinone oxidoreductase, I subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 163

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVD+I
Sbjct: 61  EERCIACKL--CEAVCPALAITIESDVRSDGTRRTTRYDIDLSKCIFCGLCEESCPVDSI 118


>gi|168243307|ref|ZP_02668239.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|194449267|ref|YP_002046585.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|198245772|ref|YP_002216591.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|205353626|ref|YP_002227427.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|207857935|ref|YP_002244586.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|194407571|gb|ACF67790.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|197940288|gb|ACH77621.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|205273407|emb|CAR38382.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205337655|gb|EDZ24419.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|206709738|emb|CAR34090.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|326624347|gb|EGE30692.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
 gi|326628726|gb|EGE35069.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|148381132|ref|YP_001255673.1| glycyl-radical activating family protein [Clostridium botulinum A
          str. ATCC 3502]
 gi|148290616|emb|CAL84745.1| putative pyruvate formate-lyase 2 activating enzyme [Clostridium
          botulinum A str. ATCC 3502]
          Length = 252

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  C    CV+ CP        N   +   +C  CG C   CP +A
Sbjct: 4  EERCTAC--GICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTNFCPNNA 50


>gi|83589025|ref|YP_429034.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83571939|gb|ABC18491.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 251

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C +  CV+ CP             I     C  CG C   CP  A++     
Sbjct: 165 CRQCGNAACVKACPEGALSRDARTRAVILDRARCTGCGSCARACPFQALRLHPRE 219


>gi|16765847|ref|NP_461462.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|197262713|ref|ZP_03162787.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|16421071|gb|AAL21421.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|197240968|gb|EDY23588.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|261247723|emb|CBG25551.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267994646|gb|ACY89531.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301159076|emb|CBW18590.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312913514|dbj|BAJ37488.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|321222772|gb|EFX47843.1| Putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|323130855|gb|ADX18285.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|307267361|ref|ZP_07548856.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917619|gb|EFN47898.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 282

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  + C LC   +CV+ C      +    + +    C  CG C   CP DAI    +P
Sbjct: 64  INNDKCTLC--GECVKACRFGALTKLIKKILVFDHLCHSCGACFEMCPYDAIVEKYKP 119


>gi|302871697|ref|YP_003840333.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574556|gb|ADL42347.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 577

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y+ ++ C  CK   C+ + CP       ++   I  + C+ CG+CE  C  +AI    E
Sbjct: 524 YIDSQKCRNCKM--CLSLGCPAISI---KDKPFIDENLCLGCGMCEDICKFNAILAQKE 577


>gi|255994378|ref|ZP_05427513.1| electron transport complex, B subunit [Eubacterium saphenum ATCC
           49989]
 gi|255993091|gb|EEU03180.1| electron transport complex, B subunit [Eubacterium saphenum ATCC
           49989]
          Length = 271

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI CK   CV  C  D  +  +    +  ++C++CG C   CP  A+
Sbjct: 206 ACIGCKK--CVAACKFDAIHVNDFLAKVDYEKCVNCGACVKACPTKAL 251



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C    DCV+ C  D  +  +    I  D+C+ CG C   CP   I
Sbjct: 132 GCLGLADCVKACEFDAIHIKDGVAVIDEDKCVACGQCAKACPKHLI 177


>gi|242278305|ref|YP_002990434.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242121199|gb|ACS78895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 327

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +   C+ C++  C  +CP     + +N +  I+ D C+    C   CP  
Sbjct: 123 IPRRCLHCRNAPCANLCPWGAAGKQKNGIVRINEDVCLGGAKCRTVCPWH 172


>gi|163784331|ref|ZP_02179235.1| nitrate reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880400|gb|EDP74000.1| nitrate reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 377

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP +  ++ E    + +  D C     C   CP   I  
Sbjct: 133 CNHCSNPGCLAACPREAIFKREQDGIVLVDLDRCQGYRYCIAGCPYKKIYF 183


>gi|154149243|ref|YP_001405797.1| NADH dehydrogenase subunit I [Campylobacter hominis ATCC BAA-381]
 gi|189030926|sp|A7HZV6|NUOI_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|153805252|gb|ABS52259.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit
           i) (ndh-1 subunit i) [Campylobacter hominis ATCC
           BAA-381]
          Length = 200

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 6   TENCILCKHT--DCVEVCPVDCFYEGENF------LAIHPDECIDCGVCEPECPVDAIKP 57
            E CI C      CV  C       G++        +I+   C+ CG+C   CP  AI  
Sbjct: 79  NERCIGCGLCEKICVSNCIRMETTLGDDGRKKVLNYSINFGRCVYCGLCADVCPELAIVH 138

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             +     +      +     ++ TK + L +  +  G
Sbjct: 139 GGDY---EFASEQRAFFGFKKDLLTKYDELKNQKEFTG 173


>gi|149185800|ref|ZP_01864115.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Erythrobacter sp.
           SD-21]
 gi|148830361|gb|EDL48797.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Erythrobacter sp.
           SD-21]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  + C+ C    CV  CP              + P  C+  G C+  CP DAI
Sbjct: 52  PLINPDLCLGC--GACVIACPEKKILALIDGKAALVEPTSCVGHGACQAACPFDAI 105


>gi|148243377|ref|YP_001228534.1| NADH dehydrogenase subunit I [Synechococcus sp. RCC307]
 gi|147851687|emb|CAK29181.1| NAD(P)H-quinone oxidoreductase subunit I [Synechococcus sp. RCC307]
          Length = 212

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 75  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 132

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 133 SMTEEYELAAF 143


>gi|126695517|ref|YP_001090403.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9301]
 gi|156632622|sp|A3PAM7|NDHI_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|126542560|gb|ABO16802.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9301]
          Length = 208

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELWLKINSEY 73
               E  L  + + N  +
Sbjct: 120 SMTEEYELATFDRHNLNF 137


>gi|159041061|ref|YP_001540313.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldivirga maquilingensis IC-167]
 gi|157919896|gb|ABW01323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga
          maquilingensis IC-167]
          Length = 98

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKP 57
          +  + C  C+   C  +CP  C+    +   +   E C++CG C   CP +AI+ 
Sbjct: 30 IDPDKCRKCEAKPCTHLCPARCYTLSPDGTVLFSHEGCLECGTCRIVCPHNAIEW 84


>gi|28210729|ref|NP_781673.1| ferredoxin [Clostridium tetani E88]
 gi|28203167|gb|AAO35610.1| rnfB/polyferredoxin [Clostridium tetani E88]
          Length = 290

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C   CPV+     +N   I+ D+C+ CG+C  +CP  AI
Sbjct: 218 CISC--GLCARNCPVEAIEMVDNLPVINYDKCVQCGICVKKCPTKAI 262



 Score = 38.4 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+      C +VC  D     +    I  ++C  CG C   CP   I
Sbjct: 144 CMG--LGSCTQVCLFDAITIEDGIAVIDEEKCTGCGACVDICPKAVI 188


>gi|159110100|ref|XP_001705312.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
          [Giardia lamblia ATCC 50803]
 gi|157433394|gb|EDO77638.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
          [Giardia lamblia ATCC 50803]
          Length = 278

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          V  + CI C    CV+ CP  C     E    +    + CI CG C   C   AI  
Sbjct: 7  VDEDLCIGCN--VCVQGCPTQCIEVNAETRKLVFRAKETCISCGHCASVCRTAAISM 61


>gi|325916606|ref|ZP_08178869.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537160|gb|EGD08893.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 139

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 81  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 133


>gi|316940643|gb|ADU74677.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium thermocellum DSM 1313]
          Length = 578

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V E C  CK   C+ + CP          + I+   C+ C +C   C  DAI
Sbjct: 525 IVIEKCRKCKM--CMRIGCPAIVDMGDH--IEINDALCVGCRLCSKVCNFDAI 573


>gi|309389845|gb|ADO77725.1| putative PAS/PAC sensor protein [Halanaerobium praevalens DSM
          2228]
          Length = 592

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V   +C  C    C+  CPV      +N   I  ++CI CG C   CP  A     E   
Sbjct: 24 VKPASCKDC--HKCLRECPVAAIGFKDNQAFIIEEKCIYCGNCIKTCPQGAKSALFEEKK 81

Query: 64 -ELWLK 68
           E +L+
Sbjct: 82 LEAFLE 87



 Score = 33.4 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDC 25
           +++ E CI C   +C++ CP   
Sbjct: 51 AFIIEEKCIYC--GNCIKTCPQGA 72


>gi|270669404|ref|ZP_06222601.1| Electron transport complex protein rnfB [Haemophilus influenzae
           HK1212]
 gi|270316570|gb|EFA28404.1| Electron transport complex protein rnfB [Haemophilus influenzae
           HK1212]
          Length = 180

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +    I PD C  C +C   CP D I  
Sbjct: 95  AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILM 149


>gi|257467927|ref|ZP_05632023.1| nitroreductase family protein fused to ferredoxin domain
          [Fusobacterium ulcerans ATCC 49185]
 gi|317062215|ref|ZP_07926700.1| nitroreductase [Fusobacterium ulcerans ATCC 49185]
 gi|313687891|gb|EFS24726.1| nitroreductase [Fusobacterium ulcerans ATCC 49185]
          Length = 266

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
          M  +  E CI C+   CVE C  +  +       I    C+ CG C   CPV+A  I   
Sbjct: 1  MVSIDKEKCIGCR--ACVEDCFPENLFLENGKAEI-KGRCMQCGHCIAVCPVNAVSITNY 57

Query: 59 TEPGLELWLKINSEYATQWP 78
           + G+E +   N E     P
Sbjct: 58 PKEGIEEY---NKEEFNISP 74


>gi|255003195|ref|ZP_05278159.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Puerto Rico]
 gi|255004324|ref|ZP_05279125.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Virginia]
          Length = 156

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 54  EERCIACKL--CEAICPAQAITIEAAERGDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 111

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                P  E   +   E       +    +    A      K 
Sbjct: 112 V--EGPNFEYATETREELMYNKEKLLCNGDVWEEALDFRIRKN 152


>gi|254995042|ref|ZP_05277232.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Mississippi]
          Length = 156

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 54  EERCIACKL--CEAICPAQAITIEAAERGDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 111

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                P  E   +   E       +    +    A      K 
Sbjct: 112 V--EGPNFEYATETREELMYNKEKLLCNGDVWEEALDFRIRKN 152


>gi|224582936|ref|YP_002636734.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|224467463|gb|ACN45293.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAIIGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     ++ L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQAL 237


>gi|206889773|ref|YP_002248951.1| anaerobic dimethyl sulfoxide reductase chain B [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741711|gb|ACI20768.1| anaerobic dimethyl sulfoxide reductase chain B [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 168

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   CV+ CP     +   +  + +    C+ C  C   CP    + + E
Sbjct: 58  PCFHCEDPWCVKACPTGAMQKRSKDGIVFVEQSLCVGCKSCITACPWGVPQWNPE 112


>gi|157375180|ref|YP_001473780.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sediminis HAW-EB3]
 gi|189043390|sp|A8FUX9|RNFB_SHESH RecName: Full=Electron transport complex protein rnfB
 gi|157317554|gb|ABV36652.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sediminis HAW-EB3]
          Length = 189

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  E CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I  
Sbjct: 107 AYIREEECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDM 161


>gi|119871841|ref|YP_929848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673249|gb|ABL87505.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 132

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 3   YVVTE--NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ +   CI C    C  VCP          +G+ +  I    CI CG C   CP  ++
Sbjct: 38  FIINDRTKCISC--QLCEAVCPAKAIRFHLEADGKRYPGIDWGRCILCGYCVDACPTGSL 95

Query: 56  KPDTEPGLELWLKIN 70
           +      + +W  +N
Sbjct: 96  RHINNTEI-VWTDLN 109


>gi|104779825|ref|YP_606323.1| formate dehydrogenase-O, Fe-S subunit [Pseudomonas entomophila L48]
 gi|95108812|emb|CAK13508.1| formate dehydrogenase-O, Fe-S subunit [Pseudomonas entomophila L48]
          Length = 316

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 93  KDGCMHCADPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|325261657|ref|ZP_08128395.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
 gi|324033111|gb|EGB94388.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
          Length = 400

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y+    C  C   DC +VCP DC      ++  I   +C  CG C P C  +AI
Sbjct: 326 YIDPRLCSGC--GDCADVCPKDCIDGKPKYIYMIDDFDCDRCGKCIPGCSEEAI 377



 Score = 33.4 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CP    +     + I P  C  CG C   CP D I
Sbjct: 312 KTCPAGVCF-SAQTIYIDPRLCSGCGDCADVCPKDCI 347


>gi|317484198|ref|ZP_07943127.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924547|gb|EFV45704.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
          Length = 301

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           + C  C    C E+CP          +      C  CG+C  ECP  A  I        +
Sbjct: 52  DKCFSC--GHCAEICPQRAVTREGEAVIFDRALCDGCGLCAKECPGKALQIAGVERDTAD 109

Query: 65  LWLKINSEYATQ 76
           +   I  + A  
Sbjct: 110 VLEDIKKDMAFY 121


>gi|269794081|ref|YP_003313536.1| NADH dehydrogenase subunit I [Sanguibacter keddieii DSM 10542]
 gi|269096266|gb|ACZ20702.1| NADH dehydrogenase subunit I [Sanguibacter keddieii DSM 10542]
          Length = 252

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 21/70 (30%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-------------------FLAIHPDECIDCGVCE 47
           E CI C+   C   CP D  Y   +                      I+   CI CG+C 
Sbjct: 83  EKCIGCEL--CAWACPADAIYVEGSSNAELPDGGHRSPGERYGSVYQINYLRCIFCGLCI 140

Query: 48  PECPVDAIKP 57
             CP  A+  
Sbjct: 141 EACPTRALTM 150


>gi|255012541|ref|ZP_05284667.1| putative dehydrogenase [Bacteroides sp. 2_1_7]
 gi|298374570|ref|ZP_06984528.1| dehydrogenase [Bacteroides sp. 3_1_19]
 gi|298268938|gb|EFI10593.1| dehydrogenase [Bacteroides sp. 3_1_19]
          Length = 605

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 5  VTEN--CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +T+   C  C    C +VC           EG  +  +  ++C DCG+CE  CP      
Sbjct: 4  ITDKSKCCGCN--ACGDVCTHKAITFKTDIEGFWYPEVDKNKCTDCGLCEKVCPNL---- 57

Query: 58 DTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
           +E   +   +I   YA    NI  + +S    A
Sbjct: 58 HSEELKKNDFEIPVCYAAIHKNIEVRFDSTSGGA 91


>gi|157412516|ref|YP_001483382.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9215]
 gi|254526469|ref|ZP_05138521.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus
           marinus str. MIT 9202]
 gi|167016274|sp|A8G2G5|NDHI_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|157387091|gb|ABV49796.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9215]
 gi|221537893|gb|EEE40346.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus
           marinus str. MIT 9202]
          Length = 208

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELWLKINSEY 73
               E  L  + + N  +
Sbjct: 120 SMTEEYELATFDRHNLNF 137


>gi|113955570|ref|YP_731812.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9311]
 gi|123327562|sp|Q0I6W0|NDHI_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|113882921|gb|ABI47879.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp.
           CC9311]
          Length = 219

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|83594655|ref|YP_428407.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83577569|gb|ABC24120.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 506

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP          L      CI CG+C   C     +    P L  +  
Sbjct: 292 CVDC--GLCVQVCPTGVDIREGTQL-----GCIGCGLCVDACNSVMTRFGLPPNLIAYDS 344

Query: 69  I 69
           I
Sbjct: 345 I 345


>gi|32480899|ref|NP_862809.1| NADH dehydrogenase subunit I [Calycanthus floridus var. glaucus]
 gi|75297114|sp|Q7YJT0|NDHI_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|32399435|emb|CAD28776.1| NADH dehydrogenase 18kD subunit [Calycanthus floridus var. glaucus]
          Length = 180

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVHWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSAYNRHELN 136


>gi|114567049|ref|YP_754203.1| MinD family protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337984|gb|ABI68832.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 288

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  E+CI C    C+E+C  D          + P  C  CG CE  CPV+AI  
Sbjct: 61  AHIDEESCISC--GLCMELCRFDAISSE---YQVLPLFCEGCGFCEKICPVEAIAM 111


>gi|309390310|gb|ADO78190.1| nitroreductase [Halanaerobium praevalens DSM 2228]
          Length = 273

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  +  E CI C    C+  C V      +    I  + C  CG C   CP DA+   TE
Sbjct: 1  MMQIDQEKCIGC--AKCITDCLVRDIVMEDGKARIKNESCFKCGHCIAICPADAVSS-TE 57

Query: 61 PGLELWLKINSEYAT 75
            ++   +  +E   
Sbjct: 58 YEMDEVKEYKAEKFE 72


>gi|256752101|ref|ZP_05492968.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749010|gb|EEU62047.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 282

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + ++ C LC   +CV+ C      +    + +    C  CG C   CP DAI    +P
Sbjct: 64  INSDKCTLC--GECVKACRFGALTKLIKKILVFDHLCHSCGACFEMCPYDAIVEKYKP 119


>gi|256545760|ref|ZP_05473116.1| pyruvate formate-lyase activating enzyme [Anaerococcus vaginalis
           ATCC 51170]
 gi|256398456|gb|EEU12077.1| pyruvate formate-lyase activating enzyme [Anaerococcus vaginalis
           ATCC 51170]
          Length = 320

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
            CI C    CV VCP    Y       +H D  CI C  CE  C   AI+   E  
Sbjct: 64  ACINC--GQCVNVCPKKIHYMENGIHKVHRDITCIGCRRCEKNCLQKAIEIVGEDK 117


>gi|218778375|ref|YP_002429693.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759759|gb|ACL02225.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 774

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPV 52
           C  C    C  +CP       E       + + P++CI CG C   CP 
Sbjct: 716 CRDC--GICEAICPQAAITRVEEPGKRFEMVVDPEKCIGCGFCAGACPC 762


>gi|158520457|ref|YP_001528327.1| thiamine pyrophosphate binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509283|gb|ABW66250.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Desulfococcus oleovorans Hxd3]
          Length = 620

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + V++ C    H DC+    CP   FY  +  + I+P+ C  C VC   CP  AI P  +
Sbjct: 562 FYVSDRCKN--HRDCINTLACP--AFYVADGRVQINPNLCAGCAVCVQVCPEKAIVPVKQ 617

Query: 61  PG 62
             
Sbjct: 618 DQ 619


>gi|326391289|ref|ZP_08212830.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992684|gb|EGD51135.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 282

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + ++ C LC   +CV+ C      +    + +    C  CG C   CP DAI    +P
Sbjct: 64  INSDKCTLC--GECVKACRFGALTKLIKKILVFDHLCHSCGACFEMCPYDAIVEKYKP 119


>gi|303257806|ref|ZP_07343816.1| electron transport complex protein RnfB [Burkholderiales bacterium
           1_1_47]
 gi|302859409|gb|EFL82490.1| electron transport complex protein RnfB [Burkholderiales bacterium
           1_1_47]
          Length = 198

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +    CI C+   C + CP D      ++   +  + C  C +C+  CPVD I       
Sbjct: 77  IDPNKCIGCRL--CSDACPTDAIIGSPKHMHCVDAERCNGCCLCQLACPVDCISMVRIDR 134

Query: 63  LE 64
             
Sbjct: 135 EW 136


>gi|293400765|ref|ZP_06644910.1| putative pyruvate formate-lyase activating enzyme
          [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305791|gb|EFE47035.1| putative pyruvate formate-lyase activating enzyme
          [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 281

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C+ C   DCV  CP D        +  + ++C+DC  C   C   A
Sbjct: 47 CMHC--GDCVTTCPTDALTLEAGKVLWNSEKCVDCDTCIHTCTHLA 90


>gi|288561161|ref|YP_003424647.1| methyl viologen-reducing hydrogenase beta subunit MvhB
           [Methanobrevibacter ruminantium M1]
 gi|288543871|gb|ADC47755.1| methyl viologen-reducing hydrogenase beta subunit MvhB
           [Methanobrevibacter ruminantium M1]
          Length = 410

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             + CI C    CV+ CP D      +     P+ C  CG+C   CPVDAI  D E G  
Sbjct: 210 DADACIGCN--SCVDACPGDFISPKSDLTVALPEACAACGLCVNVCPVDAIDLDVEYGAS 267

Query: 65  LW 66
            +
Sbjct: 268 KF 269



 Score = 40.7 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++C  C    CV  CPVD          + +  D+CI CGVC   CP +AI         
Sbjct: 141 DDCKGC--GVCVAECPVDAITLSAYGEPIEVDEDKCIQCGVCSQSCPWNAIFIAGNAKPA 198

Query: 65  LWLKINSEY 73
              K+   +
Sbjct: 199 KRSKVMKSF 207



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M     ++CI C    C  VCP      G++ +      C +   C   C   A++ D  
Sbjct: 1  MIVFNEDSCIKC--GACEGVCPTAAIEVGDHIVYCD--TCSEEPKCAEVCTKGALQVDDI 56

Query: 61 PGLEL 65
             E 
Sbjct: 57 AIDEE 61


>gi|285019250|ref|YP_003376961.1| ferredoxin protein [Xanthomonas albilineans GPE PC73]
 gi|283474468|emb|CBA16969.1| putative ferredoxin protein [Xanthomonas albilineans]
          Length = 136

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
             V+  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 81  ALVIEADCIGC--TKCIQACPVDAIVGGAKHMHTVLAPLCTGCALCLPACPVDCI 133


>gi|225568281|ref|ZP_03777306.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM
          15053]
 gi|225163000|gb|EEG75619.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM
          15053]
          Length = 88

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E CI C    C+  CPV+   + +    I  D C  CG+C  ECP +AI    E 
Sbjct: 34 ETCIAC--GTCLLYCPVNSIRKTDGTFTICYDYCKGCGICAHECPKNAITMIPEE 86


>gi|213582582|ref|ZP_03364408.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 106

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCE 47
           TY ++  C  C    CV  CP    ++   +  + +    C+ C  CE
Sbjct: 59  TYYLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCE 106


>gi|119509289|ref|ZP_01628439.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nodularia spumigena
           CCY9414]
 gi|119466131|gb|EAW47018.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nodularia spumigena
           CCY9414]
          Length = 117

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 19/115 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP--------V 52
           M Y +T  CI C    C+ VCP +     +    I P+ C +C       P         
Sbjct: 1   MAYQITSQCISCDL--CLSVCPTNAVKVIDGNHWIDPELCTNCFGSVYSVPQCKAGCPTC 58

Query: 53  DAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                      E W    + Y      +T K+         +     Y K FS  
Sbjct: 59  TGCVKQPNDYWEGWF---ANYNRSLAKLTKKQ------DYWERWFNYYSKTFSEK 104


>gi|148264190|ref|YP_001230896.1| thiamine pyrophosphate binding domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397690|gb|ABQ26323.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Geobacter uraniireducens Rf4]
          Length = 583

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  CK   C+++ CP   +     +    I P  C  C VCE  C ++AI
Sbjct: 527 VDIELCAGCK--ACLKLGCPAIIWQADGKKGKAFIDPQLCTGCNVCEQVCKLNAI 579


>gi|305663749|ref|YP_003860037.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
          aggregans DSM 17230]
 gi|304378318|gb|ADM28157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
          aggregans DSM 17230]
          Length = 97

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
          E CI C    CVE C        +     I+   C   G C   CP  AI
Sbjct: 11 ERCIGC--GKCVEACLAKALAIIDGRAMLINERMCDGFGSCIAVCPSHAI 58


>gi|290489776|gb|ADD31295.1| NADH-plastoquinone oxidoreductase subunit I protein [Euonymus
           americanus]
          Length = 175

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWQFETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|229586000|ref|YP_002844502.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.16.27]
 gi|238620985|ref|YP_002915811.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.16.4]
 gi|228021050|gb|ACP56457.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.16.27]
 gi|238382055|gb|ACR43143.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.16.4]
          Length = 94

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V   NCI CK   C   CP          + +  + C  CGVC   CPV AI    E
Sbjct: 37 PVVDYNNCIGCK--ACFMFCPESTIVPSNGKVRVDYEYCKGCGVCANVCPVKAISMVNE 93


>gi|188026046|ref|ZP_02960660.2| hypothetical protein PROSTU_02623 [Providencia stuartii ATCC
          25827]
 gi|188021394|gb|EDU59434.1| hypothetical protein PROSTU_02623 [Providencia stuartii ATCC
          25827]
          Length = 299

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 4  VVTENCIL-------CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++ + C+        C    C +VCPV           I    C  CG C   CPVDAI+
Sbjct: 19 IINDKCVRKRLKNSVCD--SCSQVCPVGAISFETMNATIDNQLCYQCGNCLFSCPVDAIE 76

Query: 57 PDTE 60
            + 
Sbjct: 77 NISP 80



 Score = 35.7 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CILC    C +VC        EN        C  C  C+  C   +I
Sbjct: 203 SCILC--GACAKVCDEQAILIEENQFIFDEKRCTGCMSCQVVCFPKSI 248


>gi|18314097|ref|NP_560764.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2,
           authentic frameshift [Pyrobaculum aerophilum str. IM2]
 gi|18161681|gb|AAL64946.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2,
           authentic frameshift [Pyrobaculum aerophilum str. IM2]
          Length = 390

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V    C  C    C  +      Y+  +    + P  C+ CG+C   CP +A KP  E  
Sbjct: 324 VDVNKCTGC--GLCYNLLKCSAIYKRPDRKAHVDPALCVGCGICAEVCPFNAFKP--EGK 379

Query: 63  LELWLKI 69
            E WL++
Sbjct: 380 REAWLEL 386


>gi|134299190|ref|YP_001112686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfotomaculum reducens MI-1]
 gi|134051890|gb|ABO49861.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Desulfotomaculum reducens MI-1]
          Length = 1481

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 4    VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
            V TE C  C    CV  C        E +    +    C  CG C   CP  A
Sbjct: 1411 VDTELCKGC--GICVSACVYGARVLDERKGIALVREVLCQGCGACVAACPSGA 1461


>gi|53728862|ref|ZP_00348260.1| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|165975622|ref|YP_001651215.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250915|ref|ZP_07337106.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251990|ref|ZP_07338161.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244978|ref|ZP_07527075.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247152|ref|ZP_07529204.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249376|ref|ZP_07531369.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251696|ref|ZP_07533601.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253931|ref|ZP_07535783.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258385|ref|ZP_07540126.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260624|ref|ZP_07542316.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165875723|gb|ABY68771.1| putative ferredoxin II, iron sulfur protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649420|gb|EFL79605.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650221|gb|EFL80386.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854143|gb|EFM86351.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856401|gb|EFM88552.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858598|gb|EFM90661.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860893|gb|EFM92901.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863135|gb|EFM95077.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867569|gb|EFM99416.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869701|gb|EFN01486.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 203

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD           + PD C  C +C   CP + I+ 
Sbjct: 113 EDMCIGC--TKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIEM 163


>gi|327478839|gb|AEA82149.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 313

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + C+ C    C++ CP      +  N +   + D CI CG C   CP D I   +E   
Sbjct: 95  KDGCMHCADPGCLKACPAPGAIVKYANGIVDFNQDHCIGCGYCITGCPFD-IPRISEKDK 153

Query: 64  ELW 66
           + +
Sbjct: 154 KAY 156


>gi|325279072|ref|YP_004251614.1| putative ferredoxin, putative iron-sulfur protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324310881|gb|ADY31434.1| putative ferredoxin, putative iron-sulfur protein [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E C  C    C+ +CPV      E  +      CI C  C  +CP +A   +T     
Sbjct: 189 VAELCTQC--GFCIGICPVQAIRLEEE-IVSDAGRCIKCCACVKQCPNEARLFETPYTDL 245

Query: 65  LW 66
           L+
Sbjct: 246 LF 247


>gi|325970887|ref|YP_004247078.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324026125|gb|ADY12884.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 354

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 3   YVVTE--NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ T+  +CI C    C   CP+      +    LA+H   C+ CG C   CP   ++ +
Sbjct: 281 HIRTDVTSCIGC--GACDRACPLSIPIQEKASKALAVHSSRCVGCGHCVDACPKHTLRYE 338

Query: 59  T 59
           T
Sbjct: 339 T 339


>gi|302336532|ref|YP_003801739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
 gi|301320372|gb|ADK68859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
          Length = 302

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V  + C+ C    C  VC +D      +       ECI CG C   CPV AI+ D
Sbjct: 234 HVDADKCVKC--GKCARVCKMDVDITKNSS----SLECIRCGECAKACPVKAIEVD 283


>gi|257454853|ref|ZP_05620104.1| electron transport complex, rnfaBcdge type, b subunit
           [Enhydrobacter aerosaccus SK60]
 gi|257447786|gb|EEV22778.1| electron transport complex, rnfaBcdge type, b subunit
           [Enhydrobacter aerosaccus SK60]
          Length = 269

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK-------P 57
            E+CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I+        
Sbjct: 113 EEDCIGC--TKCIPACPVDAIIGSGKRMHTIFTDLCTGCELCLPPCPVDCIELVPFPRLM 170

Query: 58  DTEPGLELWLKINSEYATQWPNITTK 83
           D          + + Y      I  +
Sbjct: 171 DDATRQTEQDGLRARYYAHLERIERQ 196


>gi|225024115|ref|ZP_03713307.1| hypothetical protein EIKCOROL_00983 [Eikenella corrodens ATCC
           23834]
 gi|224943140|gb|EEG24349.1| hypothetical protein EIKCOROL_00983 [Eikenella corrodens ATCC
           23834]
          Length = 159

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 114


>gi|242310562|ref|ZP_04809717.1| NADH-quinone oxidoreductase subunit I [Helicobacter pullorum MIT
           98-5489]
 gi|239522960|gb|EEQ62826.1| NADH-quinone oxidoreductase subunit I [Helicobacter pullorum MIT
           98-5489]
          Length = 204

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C      +            I+   CI CG+C   CP  AI
Sbjct: 78  NERCIGC--GLCEKICVSNCIRMETGYGEDKRKKVFEYTINFGRCIYCGLCAEVCPELAI 135

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA-KMDGV 96
                   E   +  + ++ +   +T   + L     + +GV
Sbjct: 136 VH--GKRYENASEQRASFSLKEDMLTPMDKVLKGGDSEFEGV 175


>gi|170741268|ref|YP_001769923.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195542|gb|ACA17489.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 670

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
             C    C++VCP        + +A+ P  C  CG C   CP  A
Sbjct: 281 TGCS--RCLDVCPTGAIAPAGDHVAVDPFVCAGCGSCASVCPTGA 323



 Score = 41.5 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE C LC    CV  CP     +  +   L+     C+ CG+C   CP D I  +     
Sbjct: 521 TEACTLC--HACVGACPTGALSDDPDRPLLSFSESLCVQCGLCAATCPEDVITLEPRLDF 578

Query: 64  ELWLKINSEYATQWP 78
             W         + P
Sbjct: 579 AAWAAPRRVLKEEEP 593


>gi|124485168|ref|YP_001029784.1| hypothetical protein Mlab_0341 [Methanocorpusculum labreanum Z]
 gi|124362709|gb|ABN06517.1| Cobyrinic acid a,c-diamide synthase [Methanocorpusculum labreanum
           Z]
          Length = 293

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  E C  C    C+E C        +    I+P  C  C VC   CP DA+  
Sbjct: 62  AVIDPELCTEC--GACLEHCRFHAVEMDDGAYLINPSRCEGCAVCTIVCPADAVSM 115


>gi|88602769|ref|YP_502947.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
          JF-1]
 gi|88188231|gb|ABD41228.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
          hungatei JF-1]
          Length = 57

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +  + C  C+   CV+ CP            ++ + C+DCG C   CP +AI  +
Sbjct: 5  IDKDKCTGCE--TCVDECPATAITMENEKAVVNNELCVDCGSCVDVCPAEAITME 57


>gi|74317168|ref|YP_314908.1| NADH dehydrogenase subunit I [Thiobacillus denitrificans ATCC
           25259]
 gi|115502546|sp|Q3SJP9|NUOI_THIDA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|74056663|gb|AAZ97103.1| NADH-quinone oxidoreductase chain I [Thiobacillus denitrificans
           ATCC 25259]
          Length = 162

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIDSEQRADGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|77920137|ref|YP_357952.1| putative ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77546220|gb|ABA89782.1| putative ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 59

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + +TE+CI C    C + CP+    E  +   I  D C DCG C   CPVDAIK D
Sbjct: 5  AHTITEDCINC--GACDDSCPLGAIEEKGDARVIDADACTDCGACVDSCPVDAIKAD 59


>gi|262368735|ref|ZP_06062064.1| electron transport complex protein [Acinetobacter johnsonii SH046]
 gi|262316413|gb|EEY97451.1| electron transport complex protein [Acinetobacter johnsonii SH046]
          Length = 264

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            + CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I
Sbjct: 89  EDECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCI 137


>gi|288941460|ref|YP_003443700.1| cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
 gi|288896832|gb|ADC62668.1| Cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
          Length = 301

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  + C  C    C   C  +   + +    + P  C  CG C   CP +A+
Sbjct: 66  AVIDRDTCSDC--GACEAACRYEALAQIDGRWQVDPIACEGCGACLDRCPSEAL 117


>gi|239831225|ref|ZP_04679554.1| cytochrome c oxidase accessory protein CcoG [Ochrobactrum
           intermedium LMG 3301]
 gi|239823492|gb|EEQ95060.1| cytochrome c oxidase accessory protein CcoG [Ochrobactrum
           intermedium LMG 3301]
          Length = 527

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV  CP+         L     ECI C +C   C     K D   GL  +  
Sbjct: 285 CVDCN--ACVAACPMGIDIRDGQQL-----ECITCALCIDACNTVMDKIDKPRGLISYAT 337

Query: 69  I---NSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +   N+  A    N T   +        +    K +  
Sbjct: 338 LADYNANMALATNNGTAPIDPARVYKAPNSFSDKVQNL 375


>gi|257792518|ref|YP_003183124.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476415|gb|ACV56735.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 211

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
            Y V+  C  C    C+  CP     +      + I+ ++C   G C   CP +    D
Sbjct: 60  AYHVSLGCQHCAMPACMAKCPQGAIEKDTKTGLVHINQEKCTGVGACVETCPYNVPIVD 118


>gi|227497690|ref|ZP_03927899.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832867|gb|EEH65250.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 232

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 79  ERCIGCEL--CAWACPADAIYVEAASNAPGAQYSPGERYGRVYQINYLRCIFCGMCIEAC 136

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 137 PTRALTM 143


>gi|254431184|ref|ZP_05044887.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanobium sp. PCC
           7001]
 gi|197625637|gb|EDY38196.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanobium sp. PCC
           7001]
          Length = 207

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKTTKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|119872287|ref|YP_930294.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673695|gb|ABL87951.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum islandicum DSM 4184]
          Length = 592

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C  C    C  +  C        +    + P  C+ CGVC   CP +A K   E 
Sbjct: 526 VDLEKCKSC--GLCYNLLKCSAISKRP-DGKAYVDPALCVGCGVCAEVCPFNAFK--LEG 580

Query: 62  GLELWLKI 69
             E+WL+I
Sbjct: 581 RKEIWLEI 588



 Score = 35.3 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF 32
            YV    C+ C    C EVCP + F      
Sbjct: 554 AYVDPALCVGC--GVCAEVCPFNAFKLEGRK 582


>gi|87123593|ref|ZP_01079444.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. RS9917]
 gi|86169313|gb|EAQ70569.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. RS9917]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKDLRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|323701420|ref|ZP_08113094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533679|gb|EGB23544.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 259

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C   C      + ++   I +P  C+ C  C   CP +  K + +
Sbjct: 72  CLHCLEPACASACFAKALQKTKDGPVIYYPHLCVGCRYCMIACPFNIPKYEWD 124


>gi|302864909|ref|YP_003833546.1| NADH-quinone oxidoreductase subunit I [Micromonospora aurantiaca
           ATCC 27029]
 gi|315501194|ref|YP_004080081.1| NADH-quinone oxidoreductase, chain i [Micromonospora sp. L5]
 gi|302567768|gb|ADL43970.1| NADH-quinone oxidoreductase, chain I [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407813|gb|ADU05930.1| NADH-quinone oxidoreductase, chain I [Micromonospora sp. L5]
          Length = 215

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 18/72 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                   +   I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGGDNTEEQRFSPGERYASTYQINYARCIFCGLCIEAC 109

Query: 51  PVDAIKPDTEPG 62
           P  ++    E  
Sbjct: 110 PTRSLTMSNEYE 121


>gi|156975236|ref|YP_001446143.1| electron transport complex protein RnfB [Vibrio harveyi ATCC
           BAA-1116]
 gi|166225088|sp|A7MVC6|RNFB_VIBHB RecName: Full=Electron transport complex protein rnfB
 gi|156526830|gb|ABU71916.1| hypothetical protein VIBHAR_02965 [Vibrio harveyi ATCC BAA-1116]
          Length = 197

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
           +T      W K+N+
Sbjct: 165 ETTTESWKW-KLNA 177


>gi|109946837|ref|YP_664065.1| NADH dehydrogenase subunit I [Helicobacter acinonychis str. Sheeba]
 gi|123066349|sp|Q17Z60|NUOI_HELAH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|109714058|emb|CAJ99066.1| NADH dehydrogenase I chain I [Helicobacter acinonychis str. Sheeba]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +             I+   CI CG+C   CP  AI
Sbjct: 79  SERCIGC--GLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAI 136

Query: 56  KP 57
             
Sbjct: 137 VM 138


>gi|78485379|ref|YP_391304.1| electron transport complex, RnfABCDGE type, B subunit
           [Thiomicrospira crunogena XCL-2]
 gi|78363665|gb|ABB41630.1| NADH oxidoreductase, RnfABCDGE type, B subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 190

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  + CI C H  C++ CPVD      +    +   EC  C  C P CPVD I    + 
Sbjct: 108 IDEDICIGCVH--CIKACPVDAILGATKMMHTVIESECTGCEKCIPVCPVDCIDMIPQE 164


>gi|46581545|ref|YP_012353.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450967|gb|AAS97613.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235189|gb|ADP88043.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 529

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C +  C  +CP        +    I    C+    C   CP  
Sbjct: 137 RCLHCANPPCANLCPWGSARRETSGAVSIEASTCLGGAKCRTVCPWH 183


>gi|94310165|ref|YP_583375.1| benzoyl-CoA oxygenase subunit A [Cupriavidus metallidurans CH34]
 gi|93354017|gb|ABF08106.1| Benzoyl-CoA oxygenase component A [Cupriavidus metallidurans
          CH34]
          Length = 415

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C + CP+D     +    +  D C  C  C   CP  AI  
Sbjct: 12 IDPEICIRCN--TCEDTCPIDAITHDDRNYVVKADVCNACNACLSPCPTGAIDN 63


>gi|332653228|ref|ZP_08418973.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Ruminococcaceae
           bacterium D16]
 gi|332518374|gb|EGJ47977.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Ruminococcaceae
           bacterium D16]
          Length = 254

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T+ C+ C    CV+ CPV    + +    +    CI C  C   CP +A
Sbjct: 180 TKECVRC--GVCVQACPVQAIDKEDPK-KVDDKACISCMRCISVCPHNA 225


>gi|331002311|ref|ZP_08325829.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330410127|gb|EGG89561.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 280

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CI C   DCV  CP +        +  +P++CI C  C   C   A
Sbjct: 45 CINC--MDCVPGCPTNALKNNNGKVEFYPEKCIGCDNCINICKYGA 88


>gi|291543751|emb|CBL16860.1| Iron only hydrogenase large subunit, C-terminal domain
          [Ruminococcus sp. 18P13]
          Length = 556

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV       N   I  +ECI CG C   CP +A
Sbjct: 11 NCKNCYK--CIRHCPVKSIRFSGNQAHIVGNECILCGQCFVVCPQNA 55


>gi|253681487|ref|ZP_04862284.1| nucleotide binding, CobQ/CobB/MinD/ParA family [Clostridium
           botulinum D str. 1873]
 gi|253561199|gb|EES90651.1| nucleotide binding, CobQ/CobB/MinD/ParA family [Clostridium
           botulinum D str. 1873]
          Length = 282

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C    C +VC  D     +    I    C  CG C   CP +AIK   E    +++
Sbjct: 67  CISC--GKCEKVCRFDAISNNK----IDSYSCEGCGTCIIVCPNNAIKLKEEKSANMYI 119


>gi|160933254|ref|ZP_02080643.1| hypothetical protein CLOLEP_02100 [Clostridium leptum DSM 753]
 gi|156868328|gb|EDO61700.1| hypothetical protein CLOLEP_02100 [Clostridium leptum DSM 753]
          Length = 603

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V +  C  CK   C++   CP   +    +   I P  C  C +C   CP  AI
Sbjct: 547 VNSHKCTGCK--RCIKELGCPAISYS--GHKAVIEPSMCYGCTICAQVCPFGAI 596


>gi|153940128|ref|YP_001392535.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum F str. Langeland]
 gi|152936024|gb|ABS41522.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum F str. Langeland]
 gi|295320521|gb|ADG00899.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum F str. 230613]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  C    CV+ CP        N   +   +C  CG C   CP +A
Sbjct: 52 EERCTAC--GICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTNFCPNNA 98


>gi|114329801|ref|YP_740619.1| NADH-plastoquinone oxidoreductase subunit I [Platanus occidentalis]
 gi|122165989|sp|Q09FZ2|NDHI_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|114054439|gb|ABI49833.1| NADH-plastoquinone oxidoreductase subunit I [Platanus occidentalis]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVNWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 590

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           Y++  + C+ C    CV  CP DC   GE      I  + C  CG C   CP
Sbjct: 530 YIIDPDRCMGC--GLCVYACPADCIKGGENNQPYYIEQENCSKCGACLDICP 579



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
            + CP     E      I PD C+ CG+C   CP D IK   E     +++
Sbjct: 516 EKKCPAKQCQE-LLQYIIDPDRCMGCGLCVYACPADCIKGG-ENNQPYYIE 564


>gi|332295738|ref|YP_004437661.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM
          14796]
 gi|332178841|gb|AEE14530.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM
          14796]
          Length = 504

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V  E CI C    CV+ C      + ++       ++C+ C  C   CP  AI+    PG
Sbjct: 15 VDRELCIKC--GQCVKNCGFSALMQDKDKNVKPIHEKCVACQRCMYVCPTKAIQVINFPG 72

Query: 63 LELWLKINSEY 73
           +     N+EY
Sbjct: 73 TQK----NNEY 79


>gi|325661153|ref|ZP_08149780.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472660|gb|EGC75871.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 263

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  V +  CI C+   C +VCP D      N   I P++C +CG C  +CP   I
Sbjct: 211 MA-VCSTGCIGCRM--CQKVCPADAIVVENNLAWIDPEKCTNCGACAEKCPKKII 262



 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C    CV+ CP D  +  +    +  + C  CG C   CP + I
Sbjct: 145 CGFGTCVKACPFDAIHIVDGVAVVDKEACKACGKCIKACPKNLI 188


>gi|315923859|ref|ZP_07920087.1| iron-sulfur cluster-binding protein CooF [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622699|gb|EFV02652.1| iron-sulfur cluster-binding protein CooF [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 154

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C  C+   CV+ C        +  + I  D C+ C  C   CP   +
Sbjct: 68  SCRHCEVPYCVKGCITGALSVEDGVVKIDRDRCVGCRTCIAMCPYGCL 115


>gi|303242581|ref|ZP_07329058.1| putative PAS/PAC sensor protein [Acetivibrio cellulolyticus CD2]
 gi|302589885|gb|EFL59656.1| putative PAS/PAC sensor protein [Acetivibrio cellulolyticus CD2]
          Length = 556

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 1  MT-YVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--I 55
          MT Y+VT+N  C  C    C+  CPV      +    I  DEC+ CG C   CP +A  I
Sbjct: 1  MTEYLVTKNSNCKNCYK--CIRHCPVKSLKFTDGQAHIVKDECVLCGECYVVCPQNAKQI 58

Query: 56 KPDTEPGLE 64
          + D E   +
Sbjct: 59 RQDVEKAKQ 67


>gi|297545475|ref|YP_003677777.1| putative PAS/PAC sensor protein [Thermoanaerobacter mathranii
          subsp. mathranii str. A3]
 gi|296843250|gb|ADH61766.1| putative PAS/PAC sensor protein [Thermoanaerobacter mathranii
          subsp. mathranii str. A3]
          Length = 578

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  CPV           +    CI CG C  ECP +A
Sbjct: 10 NCKNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCVIECPQNA 54


>gi|163733951|ref|ZP_02141393.1| RdxB protein [Roseobacter litoralis Och 149]
 gi|161393062|gb|EDQ17389.1| RdxB protein [Roseobacter litoralis Och 149]
          Length = 478

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCPV               ECI C +C   C     K     GL  +L 
Sbjct: 261 CIDC--MACVNVCPVGIDIRDGQ-----QMECITCALCIDACDDVMAKIGKPRGLIDYLA 313

Query: 69  INSE 72
           ++ E
Sbjct: 314 LSDE 317


>gi|115718576|ref|XP_001203141.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115774766|ref|XP_001182876.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 586

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V  + C    C+  +C + CPV                  I    CI CG+C  +CP +A
Sbjct: 13 VNADKCKPKKCR-QECRKSCPVVRMGKLCIEVTPASKIAYISEQLCIGCGICVKKCPFEA 71

Query: 55 IK 56
          I 
Sbjct: 72 IH 73



 Score = 35.3 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE 28
           Y+  + CI C    CV+ CP +  + 
Sbjct: 50 AYISEQLCIGC--GICVKKCPFEAIHI 74


>gi|18978324|ref|NP_579681.1| hypothetical protein PF1952 [Pyrococcus furiosus DSM 3638]
 gi|18894154|gb|AAL82076.1| iron-sulfur protein [Pyrococcus furiosus DSM 3638]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    CV  CP       E    + ++P++CI C  C   CP+  IK   E   
Sbjct: 586 CVGC--GVCVTKCPKRAIEIDEKRKKIIVNPEKCIHCRECMEVCPLVVIKGIEEGSQ 640


>gi|45358921|ref|NP_988478.1| ferredoxin [Methanococcus maripaludis S2]
 gi|45047787|emb|CAF30914.1| ferredoxin [Methanococcus maripaludis S2]
          Length = 132

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           E CI C    CV  CPV      E   + +  DECI C  C   CPV+AI
Sbjct: 80  EKCIDC--GACVVHCPVGALSVDEEFKILLDEDECIGCKNCAKICPVNAI 127


>gi|134298507|ref|YP_001112003.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051207|gb|ABO49178.1| putative adenylylsulfate reductase-associated electron transfer
           protein QmoA [Desulfotomaculum reducens MI-1]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 22/71 (30%)

Query: 5   VTENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECID--CG 44
           VT+NC  C    C EVCPV+                    +       I    C    CG
Sbjct: 101 VTDNCTGC--GKCSEVCPVERANAFNLGMDKTKAVYLPQPFAYPMKYVIDNTACTGASCG 158

Query: 45  VCEPECPVDAI 55
            C   C V AI
Sbjct: 159 KCVEVCDVKAI 169


>gi|318040629|ref|ZP_07972585.1| NADH dehydrogenase subunit I [Synechococcus sp. CB0101]
          Length = 200

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|302342304|ref|YP_003806833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301638917|gb|ADK84239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 352

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             E C++C    C + C +D F  G++ + ++ D CI CG+C   CP +A+K    P  
Sbjct: 273 DAEACVMC--GLCEDRCQMDVFSPGDDAMILNMDRCIGCGLCVTTCPSEALKLVRRPDD 329


>gi|301059322|ref|ZP_07200249.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446551|gb|EFK10389.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 395

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
             V  E C  C    C   C VD     E      +  D CI CG+C  +CP  +I
Sbjct: 289 AVVNEEACEGC--GKCERSCQVDAVKVVEKGKSAVVSLDRCIGCGICVSKCPTGSI 342


>gi|261601243|gb|ACX90846.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus solfataricus 98/2]
          Length = 87

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V    CI CK   C   CP          + +  + C  CGVC   CPV AI   +E
Sbjct: 30 PVVDYSKCIGCK--ACFMFCPESTIVPSNGKVRVDYEYCKGCGVCANVCPVKAISMVSE 86


>gi|229821701|ref|YP_002883227.1| NADH-quinone oxidoreductase, chain I [Beutenbergia cavernae DSM
           12333]
 gi|229567614|gb|ACQ81465.1| NADH-quinone oxidoreductase, chain I [Beutenbergia cavernae DSM
           12333]
          Length = 254

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 99  EKCIGCEL--CAWACPADAIYVEGADNSPDAQFSPGERYGRVYQINYLRCIFCGLCIEAC 156

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 157 PTRALTM 163


>gi|254491636|ref|ZP_05104815.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463114|gb|EEF79384.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Methylophaga thiooxydans DMS010]
          Length = 172

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C  T C++ CPVD      ++   +  DEC  C +C   CPVD I  
Sbjct: 92  AVIDEDRCIGC--TLCIQACPVDAILGAAKHMHTVIADECTGCELCVEPCPVDCIDM 146


>gi|170091616|ref|XP_001877030.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648523|gb|EDR12766.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 143

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 41 EERCIACKL--CEAICPAQAITIESEARLDGSRKTTKYDIDMTKCIYCGFCQEACPVDAI 98


>gi|85860375|ref|YP_462577.1| iron-sulfur cluster and nucleotide-binding protein [Syntrophus
           aciditrophicus SB]
 gi|85723466|gb|ABC78409.1| iron-sulfur cluster and nucleotide-binding protein [Syntrophus
           aciditrophicus SB]
          Length = 297

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVD 53
           +  E CI C    C+ +C        +N             ++P  C  C +C   CP  
Sbjct: 63  IDPERCIGC--GLCMGLCRFGAISSSKNEAGRDAGELEKPCVNPLLCEGCKLCVRACPEQ 120

Query: 54  AIKPDTEPGLELWL 67
           AI  +      +++
Sbjct: 121 AIDFEPHIDGRMFI 134


>gi|15679728|ref|NP_276846.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622867|gb|AAB86206.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 143

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C  +   C+ +CP D   E +  + I  D CI CG+C   CPV AI
Sbjct: 36 CMHCSPERAPCLNICPEDAIVEVDGAVVILEDRCIGCGLCRDACPVGAI 84



 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG--VCEPECPVDAIKPDTEP 61
           ++ + CI C    C + CPV      E  +A+  D CID    +C   CP  A+   +E 
Sbjct: 64  ILEDRCIGC--GLCRDACPVGAITLNERGVAVKCDLCIDRDKPLCVMVCPKGALSESSED 121

Query: 62  GL 63
            +
Sbjct: 122 MM 123


>gi|319943103|ref|ZP_08017386.1| cytochrome c oxidase accessory protein CcoG [Lautropia mirabilis
           ATCC 51599]
 gi|319743645|gb|EFV96049.1| cytochrome c oxidase accessory protein CcoG [Lautropia mirabilis
           ATCC 51599]
          Length = 504

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CVEVCP                +CI C  C   C     K     GL  + 
Sbjct: 289 SCIDC--GLCVEVCPTGIDIRDGLQY-----QCISCAACVDVCNDVMDKMSYPRGLIRYT 341

Query: 68  KINS 71
             N+
Sbjct: 342 TENA 345


>gi|307945312|ref|ZP_07660648.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseibium sp. TrichSKD4]
 gi|307771185|gb|EFO30410.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseibium sp. TrichSKD4]
          Length = 682

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C +  C++ CP          +A+    C  CG C   CP  AI        +
Sbjct: 286 GCSN--CLDACPAGALTSEAGKIAVDHGICGGCGSCSANCPTGAISYQYPSRPD 337



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           +E C LC    CV  CPV    +  +   +   E  C+ CG+C+  CP   I
Sbjct: 522 SEGCTLCL--SCVSACPVGALADNPDQPQVSFTEAACVQCGLCQTTCPESVI 571


>gi|325679784|ref|ZP_08159358.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324108599|gb|EGC02841.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 255

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + VT++C+ C    C EVCP       +       ++C  C  C   CP  AI+ 
Sbjct: 183 FRVTDSCVGC--GKCAEVCPYKSIRLVDGRPV-WGEKCTHCMSCINGCPTAAIEY 234


>gi|295675947|ref|YP_003604471.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1002]
 gi|295435790|gb|ADG14960.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1002]
          Length = 301

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C  T C++ CPVD           +  + C  C +C P CPVD I  
Sbjct: 80  AVIDEQVCIGC--TLCMQACPVDAIVGAPKQMHTVIAELCTGCDLCVPPCPVDCIAM 134


>gi|269103785|ref|ZP_06156482.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163683|gb|EEZ42179.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 445

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     K      L  +
Sbjct: 246 CIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMAKMSYPKRLISY 296


>gi|253991863|ref|YP_003043219.1| formate dehydrogenase-o, iron-sulfur subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783313|emb|CAQ86478.1| formate dehydrogenase-o, iron-sulfur subunit (formate
           dehydrogenase-beta subunit) (fdh-z beta subunit)
           (aerobic formate dehydrogenas iron-sulfur subunit)
           [Photorhabdus asymbiotica]
          Length = 309

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +      CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINKEDN 155


>gi|194033200|ref|YP_002000539.1| NADH dehydrogenase subunit I [Brachypodium distachyon]
 gi|193075608|gb|ACF08691.1| NADH dehydrogenase 18kDa subunit [Brachypodium distachyon]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP   +
Sbjct: 62  DKCIACE--VCVRVCPIDLPIVDWRFEKAVKRKQLLNYSIDFGVCIFCGNCVEYCPTSCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|167031549|ref|YP_001666780.1| formate dehydrogenase subunit beta [Pseudomonas putida GB-1]
 gi|166858037|gb|ABY96444.1| formate dehydrogenase, beta subunit [Pseudomonas putida GB-1]
          Length = 316

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 93  KDGCMHCADPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|78213919|ref|YP_382698.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9605]
 gi|110287713|sp|Q3AGY9|NDHI_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|78198378|gb|ABB36143.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp.
           CC9605]
          Length = 215

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|118581499|ref|YP_902749.1| hypothetical protein Ppro_3096 [Pelobacter propionicus DSM 2379]
 gi|118504209|gb|ABL00692.1| protein of unknown function DUF362 [Pelobacter propionicus DSM
           2379]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             V  + C+LC    C + CP        + L+I    CI C  C   CP DA++  
Sbjct: 367 PVVDKKRCVLC--GICRDACPPRVIRIKNSALSIDEGRCIRCWCCRELCPRDAMEVH 421


>gi|307298219|ref|ZP_07578023.1| BFD domain protein (2Fe-2S)-binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916305|gb|EFN46688.1| BFD domain protein (2Fe-2S)-binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 605

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 16  DCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKP 57
            C   CP      G+N      I   +C  CG+C   CP  AI  
Sbjct: 393 PCETSCPAGAISIGDNINSRPIIDYSKCTGCGICATTCPGLAIFM 437


>gi|302534962|ref|ZP_07287304.1| cytochrome c nitrite reductase, Fe-S protein [Streptomyces sp. C]
 gi|302443857|gb|EFL15673.1| cytochrome c nitrite reductase, Fe-S protein [Streptomyces sp. C]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 9   CILCKHT--DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +        CI C  C   CP    K D +  L+
Sbjct: 63  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCANCVNACPFGVPKIDLQAKLQ 122


>gi|319762960|ref|YP_004126897.1| electron transport complex, rnfabcdge type, b subunit
           [Alicycliphilus denitrificans BC]
 gi|330825040|ref|YP_004388343.1| RnfABCDGE type electron transport complex subunit B [Alicycliphilus
           denitrificans K601]
 gi|317117521|gb|ADV00010.1| electron transport complex, RnfABCDGE type, B subunit
           [Alicycliphilus denitrificans BC]
 gi|329310412|gb|AEB84827.1| electron transport complex, RnfABCDGE type, B subunit
           [Alicycliphilus denitrificans K601]
          Length = 227

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +    CI C  T C++ CP D      +    +    C  C +C P CPVD I+ +
Sbjct: 90  AVIDENWCIGC--TLCIKACPTDAILGLNKRMHTVIAPHCTGCELCLPACPVDCIRME 145


>gi|295097941|emb|CBK87031.1| hypothetical protein ENC_37430 [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENC-----ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT  C            C +VCPV  F   ++ +++    CI+CG C   CP +AI   T
Sbjct: 12 VTHACVRRRFRHASCLACADVCPVQAFSFTDSSVSVDDSRCIECGDCLFVCPAEAITGIT 71

Query: 60 E 60
           
Sbjct: 72 P 72



 Score = 41.5 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            TE+C+LC    C   C  +        L +    C  CG CE  C   AI 
Sbjct: 189 DTESCVLC--GACWRSCTENAIRFENAELVVETGRCTGCGGCEAVCQHAAIN 238


>gi|255527128|ref|ZP_05394015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296186584|ref|ZP_06854987.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509179|gb|EET85532.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296049031|gb|EFG88462.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 271

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C  C    C ++CP+    +      I  ++C+ C  C   CP  A K   +P
Sbjct: 194 PFVDMSKCSHCN--VCAKLCPMSAIDKETLK--IDEEQCLRCFCCVKRCPKKARKIIYKP 249

Query: 62  GL 63
             
Sbjct: 250 KF 251


>gi|237796639|ref|YP_002864191.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum Ba4 str. 657]
 gi|229263902|gb|ACQ54935.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum Ba4 str. 657]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  C    CV+ CP        N   +   +C  CG C   CP +A
Sbjct: 52 EERCTAC--GICVKRCPQKVITMKNNIPVVDEGKCNFCGKCTNFCPNNA 98


>gi|226306206|ref|YP_002766166.1| NADH-quinone oxidoreductase chain I [Rhodococcus erythropolis PR4]
 gi|259514779|sp|C0ZYJ2|NUOI_RHOE4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226185323|dbj|BAH33427.1| NADH-quinone oxidoreductase chain I [Rhodococcus erythropolis PR4]
          Length = 195

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEEERFSPGERYGQVYQINYLRCIGCGLCVEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|209809816|ref|YP_002265355.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Aliivibrio
           salmonicida LFI1238]
 gi|208011379|emb|CAQ81838.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Aliivibrio
           salmonicida LFI1238]
          Length = 303

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + +  +C  C   DCVE CP       +     +  +   C  C  C   CP  +    
Sbjct: 53  PHTIN-HCDHC--GDCVEPCPTGALTFDDSPSRKVIWNEALCTQCDKCIDVCPSKSNPKI 109

Query: 59  TEPGLELWLKINSEYATQWPNIT 81
           T   +E  L++  +YA     +T
Sbjct: 110 TTYSVEKLLELTKKYAPFLSGVT 132


>gi|154484943|ref|ZP_02027391.1| hypothetical protein EUBVEN_02661 [Eubacterium ventriosum ATCC
          27560]
 gi|149733896|gb|EDM50015.1| hypothetical protein EUBVEN_02661 [Eubacterium ventriosum ATCC
          27560]
          Length = 130

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          Y + E CI C    C   CP +C         I  + C+ CG C   CP +A+
Sbjct: 21 YRINEKCIGC--GLCTSKCPQNCIDTLSIPFRIRENNCLHCGNCMEVCPNNAV 71


>gi|147921367|ref|YP_684819.1| 4Fe-4S ferredoxin-domain-containing protein [uncultured
          methanogenic archaeon RC-I]
 gi|110620215|emb|CAJ35493.1| 4Fe-4S ferredoxin-domain protein [uncultured methanogenic
          archaeon RC-I]
          Length = 286

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK---PDT 59
          +  + C  C    CV  CP       +     I    C   G C   CP  AI     + 
Sbjct: 8  IDEDKCTGC--GQCVPDCPEGAIQIIDGKARLISDLFCDGLGACIGTCPEGAICVVEREA 65

Query: 60 EPGLELWLKIN 70
           P  E  +  N
Sbjct: 66 APYDEKKVMEN 76


>gi|110678599|ref|YP_681606.1| RdxB protein [Roseobacter denitrificans OCh 114]
 gi|109454715|gb|ABG30920.1| RdxB protein [Roseobacter denitrificans OCh 114]
          Length = 478

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCPV               ECI C +C   C     K     GL  +L 
Sbjct: 261 CIDC--MACVNVCPVGIDIRDGQ-----QMECITCALCIDACDDVMAKIGKPRGLIDYLA 313

Query: 69  INSE 72
           ++ E
Sbjct: 314 LSDE 317


>gi|33864284|ref|NP_895844.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9313]
 gi|81711995|sp|Q7TUL5|NDHI_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|33641064|emb|CAE22193.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9313]
          Length = 218

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAY 130


>gi|15641031|ref|NP_230662.1| electron transport complex protein RnfB [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587394|ref|ZP_01677164.1| RnfB-related protein [Vibrio cholerae 2740-80]
 gi|121729983|ref|ZP_01682400.1| RnfB-related protein [Vibrio cholerae V52]
 gi|147674952|ref|YP_001216488.1| electron transport complex protein RnfB [Vibrio cholerae O395]
 gi|153215075|ref|ZP_01949792.1| RnfB-related protein [Vibrio cholerae 1587]
 gi|153800913|ref|ZP_01955499.1| RnfB-related protein [Vibrio cholerae MZO-3]
 gi|153819293|ref|ZP_01971960.1| RnfB-related protein [Vibrio cholerae NCTC 8457]
 gi|153823433|ref|ZP_01976100.1| RnfB-related protein [Vibrio cholerae B33]
 gi|153824911|ref|ZP_01977578.1| RnfB-related protein [Vibrio cholerae MZO-2]
 gi|153829521|ref|ZP_01982188.1| RnfB-related protein [Vibrio cholerae 623-39]
 gi|227081190|ref|YP_002809741.1| RnfB-related protein [Vibrio cholerae M66-2]
 gi|229505385|ref|ZP_04394895.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286]
 gi|229510945|ref|ZP_04400424.1| electron transport complex protein RnfB [Vibrio cholerae B33]
 gi|229515402|ref|ZP_04404861.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21]
 gi|229518066|ref|ZP_04407510.1| electron transport complex protein RnfB [Vibrio cholerae RC9]
 gi|229529891|ref|ZP_04419281.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)]
 gi|229608404|ref|YP_002879052.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236]
 gi|254291761|ref|ZP_04962547.1| RnfB-related protein [Vibrio cholerae AM-19226]
 gi|254848146|ref|ZP_05237496.1| electron transport complex protein rnfB [Vibrio cholerae MO10]
 gi|255745441|ref|ZP_05419389.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101]
 gi|262151307|ref|ZP_06028442.1| electron transport complex protein RnfB [Vibrio cholerae INDRE
           91/1]
 gi|262167227|ref|ZP_06034939.1| electron transport complex protein RnfB [Vibrio cholerae RC27]
 gi|262191541|ref|ZP_06049724.1| electron transport complex protein RnfB [Vibrio cholerae CT
           5369-93]
 gi|298498871|ref|ZP_07008678.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|17369129|sp|Q9KT87|RNFB_VIBCH RecName: Full=Electron transport complex protein rnfB
 gi|172047411|sp|A5F2R3|RNFB_VIBC3 RecName: Full=Electron transport complex protein rnfB
 gi|254807927|sp|C3LTR4|RNFB_VIBCM RecName: Full=Electron transport complex protein rnfB
 gi|9655480|gb|AAF94177.1| RnfB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548397|gb|EAX58459.1| RnfB-related protein [Vibrio cholerae 2740-80]
 gi|121628269|gb|EAX60782.1| RnfB-related protein [Vibrio cholerae V52]
 gi|124114938|gb|EAY33758.1| RnfB-related protein [Vibrio cholerae 1587]
 gi|124123504|gb|EAY42247.1| RnfB-related protein [Vibrio cholerae MZO-3]
 gi|126510153|gb|EAZ72747.1| RnfB-related protein [Vibrio cholerae NCTC 8457]
 gi|126519042|gb|EAZ76265.1| RnfB-related protein [Vibrio cholerae B33]
 gi|146316835|gb|ABQ21374.1| RnfB-related protein [Vibrio cholerae O395]
 gi|148874981|gb|EDL73116.1| RnfB-related protein [Vibrio cholerae 623-39]
 gi|149741423|gb|EDM55453.1| RnfB-related protein [Vibrio cholerae MZO-2]
 gi|150422354|gb|EDN14315.1| RnfB-related protein [Vibrio cholerae AM-19226]
 gi|227009078|gb|ACP05290.1| RnfB-related protein [Vibrio cholerae M66-2]
 gi|227012833|gb|ACP09043.1| RnfB-related protein [Vibrio cholerae O395]
 gi|229333665|gb|EEN99151.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)]
 gi|229344781|gb|EEO09755.1| electron transport complex protein RnfB [Vibrio cholerae RC9]
 gi|229347171|gb|EEO12131.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21]
 gi|229350910|gb|EEO15851.1| electron transport complex protein RnfB [Vibrio cholerae B33]
 gi|229357608|gb|EEO22525.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286]
 gi|229371059|gb|ACQ61482.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236]
 gi|254843851|gb|EET22265.1| electron transport complex protein rnfB [Vibrio cholerae MO10]
 gi|255736516|gb|EET91913.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101]
 gi|262024371|gb|EEY43060.1| electron transport complex protein RnfB [Vibrio cholerae RC27]
 gi|262030923|gb|EEY49552.1| electron transport complex protein RnfB [Vibrio cholerae INDRE
           91/1]
 gi|262032595|gb|EEY51150.1| electron transport complex protein RnfB [Vibrio cholerae CT
           5369-93]
 gi|297543204|gb|EFH79254.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327483732|gb|AEA78139.1| Electron transport complex protein RnfB [Vibrio cholerae LMA3894-4]
          Length = 195

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G      +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|291523262|emb|CBK81555.1| hypothetical protein CC1_29750 [Coprococcus catus GD/7]
          Length = 243

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
          + TE C  C    CV  C        +    +   D C   G C P CP DAI  +   
Sbjct: 8  IDTEKCTGC--ALCVNACHEGAIGLRDGKAVLLREDYCDGLGDCLPACPADAIHFEERE 64


>gi|145299425|ref|YP_001142266.1| electron transport complex protein RnfB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|166225079|sp|A4SNP6|RNFB_AERS4 RecName: Full=Electron transport complex protein rnfB
 gi|142852197|gb|ABO90518.1| electron transport complex protein RnfB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 187

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    +  DEC  C +C   CP D I+ 
Sbjct: 108 AFIHEDQCIGC--TKCIQACPVDAIVGATKAMHTVITDECTGCDLCVDPCPTDCIEM 162



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           M  V+T+ C  C    CV+ CP DC         +   +
Sbjct: 137 MHTVITDECTGCDL--CVDPCPTDCIEMIPVPTTVDNWK 173


>gi|139439361|ref|ZP_01772802.1| Hypothetical protein COLAER_01821 [Collinsella aerofaciens ATCC
           25986]
 gi|133775140|gb|EBA38960.1| Hypothetical protein COLAER_01821 [Collinsella aerofaciens ATCC
           25986]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 19/97 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--------------LAIHPDECIDCGVCEPE 49
           V TE+C+ C    C ++C  +                       AI  D C+ CG C   
Sbjct: 198 VATEHCVGC--HACEKICAHNAISFDGTRERELASGATRTVHVAAIDHDRCVGCGRCIAA 255

Query: 50  CPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKES 86
           C  D IKP  +   ++   +N + A     +   + S
Sbjct: 256 CNQDCIKPGYDAAADV---LNCKIAEYTKAVVDGRPS 289


>gi|146309206|ref|YP_001189671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas mendocina ymp]
 gi|330505428|ref|YP_004382297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas mendocina NK-01]
 gi|145577407|gb|ABP86939.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pseudomonas mendocina ymp]
 gi|328919714|gb|AEB60545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas mendocina NK-01]
          Length = 83

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCD--VCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E  +E   ++  +Y
Sbjct: 59 IPLD-ENNVESKDELMQKY 76


>gi|78358565|ref|YP_390014.1| heterodisulfide reductase subunit A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220970|gb|ABB40319.1| heterodisulfide reductase, A subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 652

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C E CP        + G    ++    C  CG+C   CP  AI+       
Sbjct: 583 RCVGC--GKCRETCPFGAIEMTEFRGMPKASVVETVCQGCGICAVTCPQGAIQLQHFTDN 640

Query: 64  ELWLKINS 71
           ++  ++N+
Sbjct: 641 QILAEVNA 648



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 25/84 (29%), Gaps = 26/84 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-------------------ENFLAIHPDECID 42
            YV    C  C    C E CP    Y+                         I P+ CI 
Sbjct: 235 AYVDWSLCTGC--GACEEKCPARKTYDKFNEGIGRTTAIKIAFPQAIPKKAVITPETCIM 292

Query: 43  -----CGVCEPECPVDAIKPDTEP 61
                CG C   CP  AI+ D + 
Sbjct: 293 LTKGKCGNCAKVCPAGAIQFDQKD 316


>gi|323148958|ref|YP_004222512.1| NADH-plastoquinone oxidoreductase subunit I [Smilax china]
 gi|308742649|gb|ADO33500.1| NADH-plastoquinone oxidoreductase subunit I [Smilax china]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFEKDIKKKQLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|313681772|ref|YP_004059510.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154632|gb|ADR33310.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
           kujiense DSM 16994]
          Length = 365

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C    C  VCP          + +   P  C+ C +C   C  DAI   T   L  
Sbjct: 257 KCTAC--QMCYRVCPTAALTSDMRNSKIDFDPFLCVKCHLCHDVCESDAISVSTSYNLTE 314

Query: 66  WLK 68
           W +
Sbjct: 315 WFE 317



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C +VCP +         +I+   C+ C  C   CP +A+  D     E +
Sbjct: 24 CADVCPTNAINLSARLPSINQSLCVGCAGCVAVCPSEALGLDDFNPTEFF 73


>gi|313888764|ref|ZP_07822426.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845241|gb|EFR32640.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 294

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V ++CI C    C  VC +D           +  ECI CG C   CP  AI
Sbjct: 232 YHVDDSCISC--GKCKRVCKMDVDMSKNQ----NALECIRCGDCLRACPTSAI 278


>gi|303240920|ref|ZP_07327431.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302591506|gb|EFL61243.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V ENC  C    CV+ CP   +        I  D C+ C  C   CP  AI         
Sbjct: 197 VNENCSGC--GWCVKNCPQQNWEMENGRP-ISTDRCVGCFRCIYGCPNRAIYFQNGDKTI 253

Query: 65  LWLKINSE 72
           L    N E
Sbjct: 254 LKDGFNIE 261


>gi|300088267|ref|YP_003758789.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528000|gb|ADJ26468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 87

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + +TE CI C    C   CP +   EGE    I P  C +C        C   CPVD 
Sbjct: 1  MAFKITEECISC--GACEPECPNNAITEGETIYVIDPTRCTECVGAFSTKQCADICPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKKES 86
            PD             E   +W  +   +E 
Sbjct: 59 CVPDDANQETH-----EELLEKWRGLHPGEEP 85


>gi|288559913|ref|YP_003423399.1| indolepyruvate ferredoxin oxidoreductase alpha subunit IorA
           [Methanobrevibacter ruminantium M1]
 gi|288542623|gb|ADC46507.1| indolepyruvate ferredoxin oxidoreductase alpha subunit IorA
           [Methanobrevibacter ruminantium M1]
          Length = 663

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 5   VTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++C+ C H  CVE   CP   +   ++ + +    C  C VC   CP  AI
Sbjct: 609 IKDSCVKCLH--CVEKLACPAISYL--DDKVTVDEALCKGCTVCIQICPNKAI 657


>gi|159905593|ref|YP_001549255.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887086|gb|ABX02023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 393

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 17/84 (20%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGV 45
           M    T +CI C   +CVE CP +    G                  L I  + C+ CG 
Sbjct: 76  MPVFDTGSCINC--GNCVESCPTNVLEMGTLRKEANELLWNVPKLVNLVIDEEVCVSCGS 133

Query: 46  CEPECPVDAIKPDTEPGLELWLKI 69
           CE  CPV+AI  ++    E+ + +
Sbjct: 134 CENACPVNAISHNSNGLYEIDVNL 157



 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP-VDAIKPDTEP 61
           +  E C+ C    C   CPV+      N L  I  + C+ C  C   CP  +AI    EP
Sbjct: 123 IDEEVCVSC--GSCENACPVNAISHNSNGLYEIDVNLCVSCKNCVEACPVENAIVTYDEP 180

Query: 62  GLELWLKI 69
            L   ++I
Sbjct: 181 KLSEQIEI 188



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG------ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            E CI C    C E CP D           +N        CI+CG C   CP + ++ 
Sbjct: 46  PEKCISCS--ACAESCPSDAITIEYNEEFKKNMPVFDTGSCINCGNCVESCPTNVLEM 101



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 31/79 (39%)

Query: 4   VVTENCILC----------------------KHTDCVEVCPVDCFYEG---------ENF 32
           +V   CI C                      K   C+EVCP      G          + 
Sbjct: 216 IVPSLCIGCGNCVDVCPGSIDLERLEVNLCVKSGKCLEVCPTTAIRIGIPEKITKRTSDC 275

Query: 33  LAIHPDECIDCGVCEPECP 51
             I  ++CI C +C   C 
Sbjct: 276 YIIDEEKCIGCRICYRACN 294


>gi|187927353|ref|YP_001897840.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Ralstonia pickettii 12J]
 gi|309779946|ref|ZP_07674700.1| ferredoxin [Ralstonia sp. 5_7_47FAA]
 gi|187724243|gb|ACD25408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
          pickettii 12J]
 gi|308921305|gb|EFP66948.1| ferredoxin [Ralstonia sp. 5_7_47FAA]
          Length = 87

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPVD 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPGKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPKD-PAHEETHDQLMQKY 76


>gi|91772370|ref|YP_565062.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91711385|gb|ABE51312.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanococcoides
           burtonii DSM 6242]
          Length = 128

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
             E C+ C    C+ VCPV  F +  +  L +  D+CI CG C   CP +A+
Sbjct: 75  DEEECVEC--GACISVCPVGVFSFADDWSLEVDTDKCIQCGTCLTMCPHNAL 124


>gi|91781709|ref|YP_556915.1| ferredoxin [Burkholderia xenovorans LB400]
 gi|91685663|gb|ABE28863.1| Ferredoxin [Burkholderia xenovorans LB400]
          Length = 85

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D    LE   ++ ++Y
Sbjct: 59 IPRD-PEHLETPGELMAKY 76


>gi|83721382|ref|YP_441028.1| ferredoxin [Burkholderia thailandensis E264]
 gi|167579757|ref|ZP_02372631.1| ferredoxin [Burkholderia thailandensis TXDOH]
 gi|167617833|ref|ZP_02386464.1| ferredoxin [Burkholderia thailandensis Bt4]
 gi|257140319|ref|ZP_05588581.1| ferredoxin [Burkholderia thailandensis E264]
 gi|83655207|gb|ABC39270.1| ferredoxin [Burkholderia thailandensis E264]
          Length = 87

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ ++Y
Sbjct: 59 IPQD-PGRPETKDQLMAKY 76


>gi|330506430|ref|YP_004382858.1| 4Fe-4S binding domain-containing protein [Methanosaeta concilii
          GP-6]
 gi|328927238|gb|AEB67040.1| 4Fe-4S binding domain protein [Methanosaeta concilii GP-6]
          Length = 145

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C+   C  VC     ++  +  A   D+C  CG+C+  CP   ++ D
Sbjct: 45 CHHCEDACCTMVCSTGALHKEGDKTAFDVDKCTGCGLCQLACPFGVVRTD 94


>gi|326390997|ref|ZP_08212546.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992942|gb|EGD51385.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 149

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV+ C      +  +   +    D+C+ C  C   C   AI  D
Sbjct: 60  CRHCNDAPCVKSCITGAMQKDPSTGVVICDTDKCVGCWTCVLVCEFGAIIRD 111


>gi|302389092|ref|YP_003824913.1| aldo/keto reductase [Thermosediminibacter oceani DSM 16646]
 gi|302199720|gb|ADL07290.1| aldo/keto reductase [Thermosediminibacter oceani DSM 16646]
          Length = 318

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV   C  CK   C+  CP       E  N   I+ ++C+ CG C   CP  AI
Sbjct: 264 VVDSLCKGCK--TCLSACPNYAMEFAEERNKAYINREKCLTCGYCTASCPEFAI 315


>gi|256810025|ref|YP_003127394.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793225|gb|ACV23894.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-------------FYEGENFLAIHPDECIDCGVCEPEC 50
           V+ E CI C+   C  VCP                 Y  +    I+P+ CI C  C   C
Sbjct: 61  VIEELCIGCEG--CANVCPTKAIEMIPTEPVKITENYVKDKIPKINPERCIYCLYCHDFC 118

Query: 51  PVDAIKPDTEPGL 63
           PV ++  +  P  
Sbjct: 119 PVFSVFNEISPIH 131


>gi|255692014|ref|ZP_05415689.1| putative ferredoxin [Bacteroides finegoldii DSM 17565]
 gi|260622260|gb|EEX45131.1| putative ferredoxin [Bacteroides finegoldii DSM 17565]
          Length = 256

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + VT+ CI C+   C + CP++     E         C  C  C   CP  A++ 
Sbjct: 188 FYVTDGCIGCR--RCEKNCPMENITMSEGKPV-WGMNCTSCLACYHVCPRQAVQY 239


>gi|167856055|ref|ZP_02478798.1| electron transport complex protein RnfB [Haemophilus parasuis
           29755]
 gi|167852804|gb|EDS24075.1| electron transport complex protein RnfB [Haemophilus parasuis
           29755]
          Length = 199

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+  E CI C  T C+  CPVD      +    +  D C  C +C   CP D I+ 
Sbjct: 108 AYIHEELCIGC--TKCIAACPVDAIVGTNKAMHTVIADFCTGCELCVAPCPTDCIEM 162


>gi|52548852|gb|AAU82701.1| ferredoxin oxidoreductase [uncultured archaeon GZfos19A5]
          Length = 415

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-------I 55
           Y   + C+ C   D  + CP + F + + F       C +CG C   CP DA       I
Sbjct: 314 YFNADKCVECDVCDVEKYCPTNAFSKSKGF---DEHRCFNCGACIYLCPEDAFKGNLGRI 370

Query: 56  KPDTEPGLELWLKINS----EYATQWPNITTKKE 85
           K   +       + N     E A +  N   +KE
Sbjct: 371 KIYDKEVPITLRQSNRSKANELAKKLKNQIVEKE 404


>gi|78046995|ref|YP_363170.1| ferredoxin [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035425|emb|CAJ23070.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 98  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 150


>gi|88703573|ref|ZP_01101289.1| FixG-related protein [Congregibacter litoralis KT71]
 gi|88702287|gb|EAQ99390.1| FixG-related protein [Congregibacter litoralis KT71]
          Length = 469

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C+   CV+VCP                ECI C +C   C     K   +PGL  +
Sbjct: 269 CIDCEL--CVQVCPTGIDIRDGLQY-----ECIGCALCIDACNSVMRKMGYDPGLVRY 319


>gi|114319379|ref|YP_741062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225773|gb|ABI55572.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 428

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ C  C H  C  +CP         E  + L   P  CI CG+C+  CP  AI
Sbjct: 287 ISDAC--CNHRICAALCPTGALQPVEDEDGSGLDYDPLFCIRCGLCQQVCPEKAI 339


>gi|114321111|ref|YP_742794.1| NADH dehydrogenase subunit I [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311310|sp|Q0A783|NUOI_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114227505|gb|ABI57304.1| NADH dehydrogenase subunit I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 163

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 15/76 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----------GENFLAIHPDECIDCGVCEPECPVDA 54
            E CI CK   C  VCP                       I   +CI CG CE  CPVD+
Sbjct: 60  EERCIACKL--CEAVCPALAITIEAGPREDDGTRRTTLYEIDMFKCIYCGFCEESCPVDS 117

Query: 55  I--KPDTEPGLELWLK 68
           I    + E  +E   +
Sbjct: 118 IVETREHEYHMEHREE 133


>gi|94309960|ref|YP_583170.1| ferredoxin [Cupriavidus metallidurans CH34]
 gi|93353812|gb|ABF07901.1| electron transport complex, RnfABCDGE type, B subunit [Cupriavidus
           metallidurans CH34]
          Length = 279

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C  T C++ CPVD           + PD C  C +C   CPVD I+ 
Sbjct: 91  CIGC--TLCIQACPVDAIVGAPKQMHTVLPDWCTGCDLCVTPCPVDCIEM 138


>gi|283852407|ref|ZP_06369676.1| Electron-transferring-flavoprotein dehydrogenase [Desulfovibrio sp.
           FW1012B]
 gi|283572145|gb|EFC20136.1| Electron-transferring-flavoprotein dehydrogenase [Desulfovibrio sp.
           FW1012B]
          Length = 616

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           T+   + C  C+   C+E C          +       ++C+ CG C   C 
Sbjct: 539 TFEDPDTCRACREKTCIEACSGQAITTNPDDGVPLFDREKCVHCGACLWNCS 590


>gi|260434445|ref|ZP_05788415.1| NADH-plastoquinone oxidoreductase, i subunit [Synechococcus sp. WH
           8109]
 gi|260412319|gb|EEX05615.1| NADH-plastoquinone oxidoreductase, i subunit [Synechococcus sp. WH
           8109]
          Length = 215

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|238020501|ref|ZP_04600927.1| hypothetical protein GCWU000324_00383 [Kingella oralis ATCC 51147]
 gi|237867481|gb|EEP68487.1| hypothetical protein GCWU000324_00383 [Kingella oralis ATCC 51147]
          Length = 304

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP      + EN +   H + CI CG C   CP +  + D +  
Sbjct: 96  KDGCMHCADPGCLKACPSPGAIIQYENGIVDFHQENCIGCGYCIAGCPFNIPRMDKKEN 154


>gi|168232096|ref|ZP_02657154.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|194472499|ref|ZP_03078483.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194458863|gb|EDX47702.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|205333575|gb|EDZ20339.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
          Length = 287

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C +VCP   F   +  ++I    CI CG C   CPVDAI     
Sbjct: 28 ACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKP 72



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C +C    C   CP +     +N L I    C  CG C   CP  A+
Sbjct: 190 PQECRMC--GACWRSCPENVIQFDDNTLTIVAARCTGCGGCAAVCPHQAL 237


>gi|167762191|ref|ZP_02434318.1| hypothetical protein BACSTE_00543 [Bacteroides stercoris ATCC
           43183]
 gi|167699834|gb|EDS16413.1| hypothetical protein BACSTE_00543 [Bacteroides stercoris ATCC
           43183]
          Length = 509

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             + TE C  C    C   C             I    C+ C  C  +C   AI  
Sbjct: 221 PVIDTEKCNGC--GLCARNC--KASCINSKTHEIDYSRCVACMDCLDKCRQGAITY 272



 Score = 38.0 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 18/71 (25%)

Query: 5   VTENCILC-----KHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPEC 50
           + ENCI C     +  +C   CPV                    ++ + CI CG CE  C
Sbjct: 432 IKENCI-CITDKVECGNCARHCPVGAIQMVASDSGNPQSPKIPVVNTERCIGCGACENLC 490

Query: 51  ---PVDAIKPD 58
              P  AI  +
Sbjct: 491 PARPFSAIYVE 501


>gi|218781711|ref|YP_002433029.1| nitroreductase [Desulfatibacillum alkenivorans AK-01]
 gi|218763095|gb|ACL05561.1| nitroreductase [Desulfatibacillum alkenivorans AK-01]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 7  ENCILCKHTDCVEVCPVD----CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + C  C    CV+ CP+        +           CI C  C   CP +AI    +  
Sbjct: 24 DKCNGC--GRCVKACPIQLLELYGKKSRPNQRYDHFRCITCQNCAASCPQNAITIKGDYR 81

Query: 63 LELWLKINSEYAT 75
          ++     N+    
Sbjct: 82 VDKGFWKNAHLFR 94


>gi|149912051|ref|ZP_01900643.1| FixG-related protein [Moritella sp. PE36]
 gi|149804879|gb|EDM64915.1| FixG-related protein [Moritella sp. PE36]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     + +   GL  +  
Sbjct: 268 CIDCNL--CVQVCPAGIDIRDGLQY-----ECINCGACIDACDQTMERMNYPKGLISYTS 320

Query: 69  IN 70
            N
Sbjct: 321 EN 322


>gi|94987506|ref|YP_595439.1| Fe-S-cluster-containing hydrogenase components 1 [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731755|emb|CAJ55118.1| Fe-S-cluster-containing hydrogenase components 1 [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 158

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C H  CV  CP         +  + +  D+C  CG+C   CP D +  D
Sbjct: 55  ACPQCNHAKCVSACPTGALIMRDLDGIVYVDVDKCTGCGLCLIACPHDLLWKD 107


>gi|73669582|ref|YP_305597.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
 gi|72396744|gb|AAZ71017.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
          Length = 128

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           +   E CI C    C+ VCP++ +   +   + +   +CI CGVC   CP  A+
Sbjct: 73  HRDEEECIEC--GACISVCPMNVYSFDDSWNVLVDEKKCIQCGVCIKMCPHGAL 124


>gi|307130992|ref|YP_003883008.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
 gi|306528521|gb|ADM98451.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
          Length = 196

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            +V  +NCI C  T C++ CPVD           +  D C  C +C P CP D I
Sbjct: 109 AWVDEDNCIGC--TKCIQACPVDAIVGTTRAVHTVIRDLCTGCNLCVPPCPTDCI 161


>gi|294340543|emb|CAZ88928.1| Putative Electron transport complex, RnfABCDGE type, B subunit
           (RnfB) [Thiomonas sp. 3As]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +    CI C  T C++ CPVD      +    +  D C  C +C P CPVD I+ +
Sbjct: 81  AVIDPALCIGC--TLCIQACPVDAIAGVSKRMHTVIEDWCTGCALCLPPCPVDCIRME 136


>gi|206942068|gb|ACI22631.1| NADH-plastoquinone oxidoreductase subunit I [Aneura pinguis]
          Length = 177

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 58  DKCIACE--VCVRVCPMNLPVVDWELRRTMRRKRLRSYSIDFGICIFCGNCVEYCPTNCL 115

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 116 SMTEEYELSTHDRHELN 132


>gi|149390497|ref|YP_001294325.1| NADH-plastoquinone oxidoreductase subunit I [Illicium oligandrum]
 gi|156632614|sp|A6MMZ9|NDHI_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|147917450|gb|ABQ52574.1| NADH-plastoquinone oxidoreductase subunit I [Illicium oligandrum]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|121720668|ref|YP_001001588.1| NADH-plastoquinone oxidoreductase subunit I [Nuphar advena]
 gi|156632618|sp|A1XG09|NDHI_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|84682259|gb|ABC60513.1| NADH-plastoquinone oxidoreductase subunit I [Nuphar advena]
          Length = 179

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|113867168|ref|YP_725657.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525944|emb|CAJ92289.1| Predicted NADH:ubiquinone oxidoreductase,subunit RnfB [Ralstonia
           eutropha H16]
          Length = 269

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C++ CPVD      +    + PD C  C +C   CPVD I  
Sbjct: 83  IDESLCIGC--TLCIQACPVDAIAGAAKQMHTVIPDWCTGCDLCVAPCPVDCIDM 135


>gi|92109354|ref|YP_571642.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91802436|gb|ABE64810.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
          Length = 947

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
            C+ C++  C  VCPV         L A   + C+    CE  CP  
Sbjct: 768 PCMQCENAPCEPVCPVAASVHDSEGLNAQVYNRCVGTRFCEANCPYK 814


>gi|46581201|ref|YP_012009.1| ferredoxin [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601567|ref|YP_965967.1| ferredoxin [Desulfovibrio vulgaris DP4]
 gi|46450622|gb|AAS97269.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561796|gb|ABM27540.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio vulgaris DP4]
 gi|311234870|gb|ADP87724.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio vulgaris RCH1]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           +C+     DCVEVCP D  +       +   +C  CGVC   CP +
Sbjct: 139 SCLG--LGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRN 182



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECPVDAIKPD 58
           CI C    CV+ CP     +    + I   +C+  G      C   CP + ++  
Sbjct: 214 CINC--GKCVKACPAHAISQETGRIEIDQKKCLSYGPDCNEACVTACPRNIMRHM 266



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 18/74 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
           T+V    C  C    C+  CP              V C  + +    +   E  CI+CG 
Sbjct: 162 THVDLAKCTGC--GVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGK 219

Query: 46  CEPECPVDAIKPDT 59
           C   CP  AI  +T
Sbjct: 220 CVKACPAHAISQET 233


>gi|21231826|ref|NP_637743.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC
          33913]
 gi|66768048|ref|YP_242810.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991179|ref|YP_001903189.1| Putative ferredoxin [Xanthomonas campestris pv. campestris str.
          B100]
 gi|21113541|gb|AAM41667.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC
          33913]
 gi|66573380|gb|AAY48790.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|167732939|emb|CAP51135.1| Putative ferredoxin [Xanthomonas campestris pv. campestris]
          Length = 94

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  + E C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINELCVNCD--VCEPACPNQAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 58

Query: 55 IKPDT--EPGLELWLKINSEYATQWPNITTKKESLP 88
          I PD       +  L    +     P +  ++   P
Sbjct: 59 IDPDPAIPETHDQLLAKLIQLQRDHPELYEQEPPAP 94


>gi|329118908|ref|ZP_08247603.1| NADH-quinone oxidoreductase subunit I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464936|gb|EGF11226.1| NADH-quinone oxidoreductase subunit I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 114


>gi|311697015|gb|ADP99888.1| protein containing 4Fe-4S ferredoxin, iron-sulfur binding, subgroup
           domains [marine bacterium HP15]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE--LWLK 68
            C  T C++VCP +  +   + + I  D C  CG C   CP  A+  +  P       ++
Sbjct: 268 GC--TRCLDVCPTEAIFSFGDHIQIDSDICAGCGSCAAVCPTSAVTMNETPFEAITKAVE 325

Query: 69  INSE 72
           + ++
Sbjct: 326 VMAK 329



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++ C LC    CV +CP      +     +    + C+ CG+CE  CP  AI
Sbjct: 488 IDSDKCTLCL--ACVSLCPTGALGDHPDRPEVQFTENACVQCGICESTCPETAI 539


>gi|306819722|ref|ZP_07453382.1| iron-sulfur cluster-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552220|gb|EFM40151.1| iron-sulfur cluster-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 288

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKP 57
           +    CI+C    CV VCPV+ F   ++ +     P  CI C  C   CP  A+K 
Sbjct: 209 IDATKCIVC--GQCVSVCPVNMFVNLDSKVQMVRDPKHCILCAECYHHCPAKAVKH 262


>gi|229580474|ref|YP_002838874.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus Y.G.57.14]
 gi|228011190|gb|ACP46952.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus Y.G.57.14]
          Length = 94

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V    CI CK   C   CP          + +  + C  CGVC   CPV AI    E
Sbjct: 37 PVVDYNKCIGCK--VCFMFCPESTIVPSNGKVRVDYEYCKGCGVCANVCPVKAISMVNE 93


>gi|227824514|ref|ZP_03989346.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21]
 gi|226905013|gb|EEH90931.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21]
          Length = 57

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +  + CI C    C   CPV    E      +    CIDC  C   CPV AI  +
Sbjct: 1  MAHKIDQDACIGC--GSCAGTCPVGAISEDNGKYKVDEASCIDCDACTGACPVGAIAAE 57


>gi|254491908|ref|ZP_05105087.1| NADH-quinone oxidoreductase, chain I subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463386|gb|EEF79656.1| NADH-quinone oxidoreductase, chain I subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 162

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIGCKL--CEAVCPALAITIDTEPRDDGTRRTTRYDIDLFKCIYCGFCEESCPVDSI 117


>gi|253700654|ref|YP_003021843.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sp. M21]
 gi|251775504|gb|ACT18085.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sp. M21]
          Length = 584

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIK 56
           VV ++C  C+   C+++ CP   +           I P  C  C VC   C   AI+
Sbjct: 527 VVEDSCTGCR--ACLKIGCPAIEWVPSSGKKGQAKIDPLLCNGCDVCRQLCKFSAIQ 581


>gi|21242137|ref|NP_641719.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107549|gb|AAM36255.1| ferredoxin II [Xanthomonas axonopodis pv. citri str. 306]
          Length = 168

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 110 AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 162


>gi|119716585|ref|YP_923550.1| putative glutamate synthase (NADPH) small subunit [Nocardioides sp.
           JS614]
 gi|119537246|gb|ABL81863.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 544

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 8   NCILCKHT----DCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C+ C +     +C  VCP +   +    +    I  D C  CG+C  ECP  AI+   E
Sbjct: 483 RCMSCGNCFSCDNCFGVCPDNAITKTGDPDTPYLIDLDYCKGCGLCAAECPAGAIRMAPE 542

Query: 61  P 61
            
Sbjct: 543 E 543


>gi|331085092|ref|ZP_08334178.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407875|gb|EGG87365.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 263

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  V +  CI C+   C +VCP D      N   I P++C +CG C  +CP   I
Sbjct: 211 MA-VCSTGCIGCRM--CQKVCPADAIVVENNLAWIDPEKCTNCGACAEKCPKKII 262



 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C    CV+ CP D  +  +    +  + C  CG C   CP + I
Sbjct: 145 CGFGTCVKACPFDAIHIVDGVAVVDKEACKACGKCIKACPKNLI 188


>gi|307262756|ref|ZP_07544383.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871901|gb|EFN03618.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 196

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD           + PD C  C +C   CP + I+ 
Sbjct: 106 EDMCIGC--TKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIEM 156


>gi|296242973|ref|YP_003650460.1| ABC transporter-like protein [Thermosphaera aggregans DSM 11486]
 gi|296095557|gb|ADG91508.1| ABC transporter related protein [Thermosphaera aggregans DSM
          11486]
          Length = 602

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 2  TYVVTENCI--LCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECP 51
            V  + C    C   +C+  CPV+           E +    I  D+CI CG+C  +CP
Sbjct: 5  AVVDRDYCKPDKCTL-ECIRFCPVNRTKKVKAIDLSEDKTHSVIFEDKCIGCGICVKKCP 63

Query: 52 VDAI 55
           +AI
Sbjct: 64 FNAI 67


>gi|226950218|ref|YP_002805309.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842634|gb|ACO85300.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ +C+ CK   C   CP+           I   +CI CG C   CP ++I
Sbjct: 164 VSSSCVSCKL--CKTACPMGIVPYDYKGNLIDHPDCIQCGKCINICPKNSI 212


>gi|182412302|ref|YP_001817368.1| NADH-quinone oxidoreductase, chain I [Opitutus terrae PB90-1]
 gi|177839516|gb|ACB73768.1| NADH-quinone oxidoreductase, chain I [Opitutus terrae PB90-1]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 21/108 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----------------GENFLAIHPDECIDCGVCEPEC 50
           E C+ C    C  VCP                            I    CI CG+C+  C
Sbjct: 67  EKCVSC--QLCEFVCPPKAIRIWPGEIAADAPTAHVERAPREFEIDMLRCIYCGMCQEVC 124

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA-KMDGVK 97
           P +AI    +  +  +    +E       +     +LP    K D  K
Sbjct: 125 PEEAIFLQQQYTMTGYT--RAEMVNNKQRLYELGGTLPDQHFKWDKKK 170


>gi|153813652|ref|ZP_01966320.1| hypothetical protein RUMOBE_04075 [Ruminococcus obeum ATCC 29174]
 gi|149830268|gb|EDM85361.1| hypothetical protein RUMOBE_04075 [Ruminococcus obeum ATCC 29174]
          Length = 290

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    C + C  +     ++ L I  ++C  CG C   CPVDA
Sbjct: 166 EDTCIHC--GVCEKACREEAISFQDDKLIIDNEKCNYCGRCAKSCPVDA 212



 Score = 33.8 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA 34
           +  E C  C    C + CPVD +   E FL 
Sbjct: 193 IDNEKCNYC--GRCAKSCPVDAWDVNEAFLV 221


>gi|139438604|ref|ZP_01772120.1| Hypothetical protein COLAER_01118 [Collinsella aerofaciens ATCC
           25986]
 gi|133776143|gb|EBA39963.1| Hypothetical protein COLAER_01118 [Collinsella aerofaciens ATCC
           25986]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +CI C    C + CP       +N   I   +C+ CG+C   CP  AI 
Sbjct: 104 SCIGC--GMCAKKCPAGAIRIEDNCAHIDGVDCLSCGMCAVVCPHGAIH 150



 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +E CI C    CV  CP       +    +   +C  CG+C   CP   I
Sbjct: 28 SEGCIGC--GACVTACPHGAIALVDGIARVDRSKCTGCGLCGMACPQRVI 75


>gi|123965423|ref|YP_001010504.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9515]
 gi|156632625|sp|A2BUD6|NDHI_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|123199789|gb|ABM71397.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9515]
          Length = 208

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELWLKINSEY 73
               E  L  + + N  +
Sbjct: 120 SMTEEYELATFDRHNLNF 137


>gi|116073963|ref|ZP_01471225.1| NADH dehydrogenase subunit I [Synechococcus sp. RS9916]
 gi|116069268|gb|EAU75020.1| NADH dehydrogenase subunit I [Synechococcus sp. RS9916]
          Length = 214

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|160877599|ref|YP_001556915.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS195]
 gi|160863121|gb|ABX51655.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS195]
 gi|315269797|gb|ADT96650.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS678]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMDRMGYEKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|94498903|ref|ZP_01305441.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oceanobacter sp. RED65]
 gi|94428535|gb|EAT13507.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oceanobacter sp. RED65]
          Length = 195

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I  
Sbjct: 110 AVIREDECIGC--TKCIQACPVDAILGAAKQMHTVIEDECTGCDLCLDPCPVDCIDM 164


>gi|18977851|ref|NP_579208.1| putative oxidoreductase, Fe-S subunit [Pyrococcus furiosus DSM
           3638]
 gi|18893607|gb|AAL81603.1| putative oxidoreductase, Fe-S subunit [Pyrococcus furiosus DSM
           3638]
          Length = 173

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           V   C+ C    CV  CP +     E    + ++ ++CI CG C   CP
Sbjct: 54  VPHTCVQCPDYPCVNACPTNALSVDEKTGAVVVNEEKCITCGACVLACP 102


>gi|87119910|ref|ZP_01075806.1| probable ferredoxin [Marinomonas sp. MED121]
 gi|86164612|gb|EAQ65881.1| probable ferredoxin [Marinomonas sp. MED121]
          Length = 470

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCP          +     +CI C +C   C     K D   GL  +  
Sbjct: 268 CIDCN--QCVHVCPAGIDIRDGLQI-----QCIGCALCIDACDSVMEKMDYPKGLISYTT 320

Query: 69  IN 70
            N
Sbjct: 321 EN 322


>gi|148545776|ref|YP_001265878.1| formate dehydrogenase subunit beta [Pseudomonas putida F1]
 gi|148509834|gb|ABQ76694.1| formate dehydrogenase beta subunit [Pseudomonas putida F1]
          Length = 316

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 93  KDGCMHCADPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|323701335|ref|ZP_08113009.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533594|gb|EGB23459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 257

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV+ CPV     +   + + + P+ C  CG C   CP  +I    
Sbjct: 162 CRQCGNARCVQACPVGALERHPETHAVQLKPEICQGCGACAEACPFGSIHFKD 214



 Score = 34.6 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            E C  C    C E CP    +  +    I  D C     C   C   A++ 
Sbjct: 192 PEICQGC--GACAEACPFGSIHFKDGKPLIC-DLCGGDPKCVDRCATGALRF 240


>gi|291543742|emb|CBL16851.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus sp. 18P13]
          Length = 593

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V    C+ CK       CP            I PD C  C +C   C   AI+ + 
Sbjct: 538 VDESRCVGCKQCIRELGCP--AISLKGQKAYIEPDLCFGCTICAQVCKPGAIREED 591


>gi|294670125|ref|ZP_06735050.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291308052|gb|EFE49295.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 170

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++    CI C  T C+  CPVD      +    +  +EC  CG+C    P        E
Sbjct: 74  AWIDESACIGC--TACIRACPVDAIMGASKLMHTVIAEECTGCGLCVAPLPRRLHPHAAE 131


>gi|268611863|ref|ZP_06145590.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 268

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP +         +I  ++C +CG C   CPV  I 
Sbjct: 214 CIGCK--ICEKKCPSEAIKVENFHASIDYEKCTNCGSCMAACPVKVIH 259


>gi|269140680|ref|YP_003297381.1| formate dehydrogenase-N beta subunit [Edwardsiella tarda EIB202]
 gi|267986341|gb|ACY86170.1| formate dehydrogenase-N beta subunit [Edwardsiella tarda EIB202]
 gi|304560465|gb|ADM43129.1| Formate dehydrogenase N beta subunit [Edwardsiella tarda FL6-60]
          Length = 317

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCADPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRMNPEDK 155


>gi|225630646|ref|YP_002727437.1| NADH dehydrogenase I, I subunit [Wolbachia sp. wRi]
 gi|225592627|gb|ACN95646.1| NADH dehydrogenase I, I subunit [Wolbachia sp. wRi]
          Length = 169

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 20/100 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 67  EERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 124

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                P  E   +   E       +  K++ L +    + 
Sbjct: 125 V--EGPNFEFATETREEL------MYNKEKLLRNGEVWED 156


>gi|254282045|ref|ZP_04957013.1| cytochrome c oxidase accessory protein CcoG [gamma proteobacterium
           NOR51-B]
 gi|219678248|gb|EED34597.1| cytochrome c oxidase accessory protein CcoG [gamma proteobacterium
           NOR51-B]
          Length = 470

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                +CI C +C   C     K +   GL  +  
Sbjct: 270 CIDC--QLCVQVCPTGIDIRDGLQY-----QCIGCALCIDACNSIMDKMNYPRGLVSYTS 322

Query: 69  INS 71
            N+
Sbjct: 323 ENA 325


>gi|218960429|ref|YP_001740204.1| ferredoxin, 4Fe-4S [Candidatus Cloacamonas acidaminovorans]
 gi|167729086|emb|CAO79997.1| ferredoxin, 4Fe-4S [Candidatus Cloacamonas acidaminovorans]
          Length = 56

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  E CI C    C++VCPV       +        CIDCG C   CPV AI
Sbjct: 5  IDKETCIGC--GACIDVCPVSALKLVNDKAECDESLCIDCGACIDTCPVQAI 54


>gi|158520765|ref|YP_001528635.1| proto-chlorophyllide reductase 57 kD subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158509591|gb|ABW66558.1| Proto-chlorophyllide reductase 57 kD subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 263

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 5   VTEN-CILCKHTDCVEVC--PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+  C LC    CV  C  P  C  E      I P  C+ CG C   CP   I
Sbjct: 142 ITDADCTLC--GACVAACRDPAVCLDEANTRPVIDPGLCLACGACAKACPTGTI 193


>gi|73540672|ref|YP_295192.1| NADH dehydrogenase subunit I [Ralstonia eutropha JMP134]
 gi|115502538|sp|Q473T5|NUOI_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|72118085|gb|AAZ60348.1| NADH-quinone oxidoreductase, chain I [Ralstonia eutropha JMP134]
          Length = 163

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDA+
Sbjct: 61  EERCIACKL--CEAVCPALAITIESDVRADGTRRTTRYDIDLTKCIFCGFCEEACPVDAV 118


>gi|320449682|ref|YP_004201778.1| NADH-quinone oxidoreductase subunit I [Thermus scotoductus SA-01]
 gi|320149851|gb|ADW21229.1| NADH-quinone oxidoreductase, subunit I [Thermus scotoductus SA-01]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 26/99 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C    C   CP    Y                       I+   CI CG+CE  C
Sbjct: 51  EKCIGCSL--CAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPS 89
           P  AI    +  +  +     EY+     I  K++ L  
Sbjct: 109 PTGAIVLGYDFEMADY-----EYSDL---IYGKEDMLVD 139


>gi|316962582|gb|EFV48695.1| NADH dehydrogenase I, I subunit [Trichinella spiralis]
          Length = 114

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 50  EERCIACKL--CEAICPAQAITIEAEERPDGSRRTTRYDIDMCKCIYCGLCQEACPVDAI 107


>gi|297619557|ref|YP_003707662.1| NIL domain-containing protein [Methanococcus voltae A3]
 gi|297378534|gb|ADI36689.1| NIL domain protein [Methanococcus voltae A3]
          Length = 132

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            E CI C    C+  CPV      E+F      DECI C  C   CP  AI    
Sbjct: 79  EEKCIDC--GACIVHCPVGAIKFEEDFSVAFDIDECIGCKTCAKICPTKAIIVHD 131


>gi|295137002|ref|YP_003587549.1| NADH dehydrogenase subunit I [Pisum sativum]
 gi|293338574|gb|ADE43547.1| NADH dehydrogenase subunit I [Pisum sativum]
          Length = 166

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKMETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|268609516|ref|ZP_06143243.1| hypothetical protein RflaF_08470 [Ruminococcus flavefaciens FD-1]
          Length = 205

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++CI C    C+  CP     E +    I  + C+ CG C   CPV A+
Sbjct: 153 YFVTDDCIRC--GSCLSDCP-QSCIELKEKALIRQENCLHCGNCAAVCPVGAV 202


>gi|291286150|ref|YP_003502966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883310|gb|ADD67010.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 204

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +C  C +  C   CPV   Y+ E    + ++ D C D   C   CP  A +   +   
Sbjct: 58  SCNHCANPACTAACPVGAIYKREEDGIVIVNRDLCQDIKACAVACPYGAPQFGDDDSE 115


>gi|182416954|ref|ZP_02948338.1| anaerobic sulfite reductase subunit C [Clostridium butyricum 5521]
 gi|237668518|ref|ZP_04528502.1| nitrite/sulfite reductase 4Fe-4S family protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182379252|gb|EDT76753.1| anaerobic sulfite reductase subunit C [Clostridium butyricum 5521]
 gi|237656866|gb|EEP54422.1| nitrite/sulfite reductase 4Fe-4S family protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 285

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C        +  +  + D C++CG C   C + A
Sbjct: 165 DKCVGC--GLCVKSCRQKALEVVDGKIVHNKDLCVNCGGCVRACNLKA 210


>gi|281357881|ref|ZP_06244366.1| glycyl-radical enzyme activating protein family [Victivallis
          vadensis ATCC BAA-548]
 gi|281315539|gb|EFA99567.1| glycyl-radical enzyme activating protein family [Victivallis
          vadensis ATCC BAA-548]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C +C    CV  CP  C    +     + + C+ CG C   C  DA+
Sbjct: 54 KCTVC--GRCVPACPHGCHKIEQGRHVFNREFCVGCGKCVKHCLSDAL 99


>gi|221066934|ref|ZP_03543039.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni KF-1]
 gi|220711957|gb|EED67325.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni KF-1]
          Length = 224

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E  CI C  T C++ CP D      +    +  D C  C +C P CPVD I
Sbjct: 88  VIDEAWCIGC--TLCIKACPTDAILGANKRMHTVIADHCTGCELCIPVCPVDCI 139


>gi|167039314|ref|YP_001662299.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X514]
 gi|166853554|gb|ABY91963.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X514]
          Length = 580

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          NC  C    CV  CPV           +    CI CG C  ECP +A K   +       
Sbjct: 12 NCKNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCVIECPQNAKKIRNDLHAVK-E 68

Query: 68 KINS 71
           IN+
Sbjct: 69 FINA 72


>gi|328948664|ref|YP_004366001.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema succinifaciens DSM 2489]
 gi|328448988|gb|AEB14704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema succinifaciens DSM 2489]
          Length = 56

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++ +CI C    C   CP +   E  +   I+ D C+ CG C   CPV AI  +
Sbjct: 1  MAYKISSDCINC--GACEGECPSEAISEVNDKRQINADNCVSCGSCASVCPVGAISEE 56


>gi|326796922|ref|YP_004314742.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinomonas mediterranea MMB-1]
 gi|326547686|gb|ADZ92906.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinomonas mediterranea MMB-1]
          Length = 83

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GVCEPECPVDAIKPDT 59
          M+ ++T+ CI C    C   CP +   +GE    I P +C +C G  +    V     D 
Sbjct: 1  MSLIITDECINCD--VCEPECPNEAISQGEEIYVIDPAKCTECVGHYDEPQCVQVCPVDC 58

Query: 60 EPGLELWLKINSEYATQWPNITTK 83
           P  + +++   E   ++  +T +
Sbjct: 59 IPKDKDYVETEEELMEKYLVLTGQ 82


>gi|323701313|ref|ZP_08112988.1| nitrite and sulphite reductase 4Fe-4S region [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533915|gb|EGB23779.1| nitrite and sulphite reductase 4Fe-4S region [Desulfotomaculum
           nigrificans DSM 574]
          Length = 232

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C +C    CV  CP DC   GE    I    C++CG C  +CP  AI
Sbjct: 98  CTMC--GLCVAACPDDCIVLGEAGPIIDRQVCLNCGKCAAKCPTGAI 142


>gi|308049383|ref|YP_003912949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307631573|gb|ADN75875.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 236

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    Y  E    + +   +C  C  C   CP +
Sbjct: 106 SCQQCQKAPCVMVCPTGAAYRDEKTGIVTMDGSKCAGCKYCIGACPYN 153


>gi|302343180|ref|YP_003807709.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfarculus baarsii DSM 2075]
 gi|301639793|gb|ADK85115.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 454

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 12/55 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF-----YEGENFLA-----IHPDECIDCGVCEPECP 51
           E CI C    CV+VCPV+          +              CI+CG C   CP
Sbjct: 380 EPCIHC--GRCVQVCPVNLIPAELGKMCQYGHYEEAADKDLMHCIECGCCAYVCP 432


>gi|291278693|ref|YP_003495528.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
 gi|290753395|dbj|BAI79772.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
          Length = 353

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE C  C    C + C  D      +  A   ++C  C  C   CP  AI  + +   
Sbjct: 189 VHTEKCTAC--GLCKDACASDAITI--SKYAEITEKCTGCARCIAVCPQGAIGINWDETA 244

Query: 64  ELWLKINSEYA 74
           E      +EYA
Sbjct: 245 ENTSLKMAEYA 255


>gi|283853033|ref|ZP_06370290.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283571570|gb|EFC19573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 652

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C+ C    C+  CP     E    G+    +    C  CG+C   CP  AI+   
Sbjct: 579 VDIKRCVGC--GKCIITCPFKAIKEVEFRGQKKAEVIETVCQGCGLCTSTCPQGAIQLSH 636

Query: 60  EPGLELWLKINS 71
               ++  ++N+
Sbjct: 637 FTDNQILAEVNA 648



 Score = 38.4 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 23/85 (27%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD-------------------CFYEGENFLAIHPDECID 42
           TYV  E C  C    C E CP                               I P  C  
Sbjct: 235 TYVDWELCTGC--GACTEKCPSKKNPDAFNEKIGPTTSINIPFPQAIPKKAVIDPTTCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AI+ D    
Sbjct: 293 FVKGKCGVCAKVCPTGAIRYDMTDE 317


>gi|209921878|ref|YP_002295957.1| anaerobic sulfite reductase subunit C [Escherichia coli SE11]
 gi|209915371|dbj|BAG80442.1| anaerobic sulfite reductase subunit C [Escherichia coli SE11]
          Length = 337

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CI C    CV+ C    V C        A     CI CG C   CP  A +   +   
Sbjct: 178 ERCIGC--GACVKACAHHAVGCLSLKNGKAAKEESLCIGCGECVLACPTLAWQRQPQEFW 235

Query: 64  E 64
           +
Sbjct: 236 Q 236


>gi|206891147|ref|YP_002248826.1| NAD(P)H-quinone oxidoreductase chain I, (NAD(P)H dehydrogenase,
          chain I) [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743085|gb|ACI22142.1| NAD(P)H-quinone oxidoreductase chain I, (NAD(P)H dehydrogenase,
          chain I) [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 162

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 4  VVTENCILCKHTDCVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V    CI C   +CV  CP        Y+ E  +      CI CG C   CP  AI 
Sbjct: 39 VDPNKCIGC--GNCVRTCPSRLITIENYKDERIVMFSSGRCIYCGRCAAACPEKAIC 93


>gi|194289253|ref|YP_002005160.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193223088|emb|CAQ69093.1| FERREDOXIN [4FE-4S] PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 273

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +    CI C  T C++ CPVD      +    + PD C  C +C P CPVD I  
Sbjct: 83  IDESLCIGC--TLCIQACPVDAIAGAAKQMHTVIPDLCTGCDLCVPPCPVDCIDM 135


>gi|187776896|ref|ZP_02993369.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
          15579]
 gi|187775555|gb|EDU39357.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
          15579]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  C    CV+ CP        N   +   +C  CG C   CP +A
Sbjct: 52 EERCTAC--GICVKRCPQKVITMKNNIPVVDEGKCNFCGKCTNFCPNNA 98


>gi|153931596|ref|YP_001385507.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153934810|ref|YP_001388913.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum A str. Hall]
 gi|152927640|gb|ABS33140.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|152930724|gb|ABS36223.1| glycyl-radical enzyme activating family protein [Clostridium
          botulinum A str. Hall]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  C    CV+ CP        N   +   +C  CG C   CP +A
Sbjct: 52 EERCTAC--GICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTNFCPNNA 98


>gi|134298641|ref|YP_001112137.1| aldo/keto reductase [Desulfotomaculum reducens MI-1]
 gi|134051341|gb|ABO49312.1| aldo/keto reductase [Desulfotomaculum reducens MI-1]
          Length = 315

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + E C  C    CVE C     +     + + P+ C  CG C   CP+ AI
Sbjct: 264 IDEWCEGC--GACVEKCGAAALFLDGGKVKVKPELCRLCGYCGAVCPLFAI 312


>gi|302343604|ref|YP_003808133.1| Cobyrinic acid ac-diamide synthase [Desulfarculus baarsii DSM 2075]
 gi|301640217|gb|ADK85539.1| Cobyrinic acid ac-diamide synthase [Desulfarculus baarsii DSM 2075]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    C E+C        E     I    C  C +C   CP  AI  
Sbjct: 68  CTGC--GLCAELCAFGAARLDEGGLAVIDESACEGCKLCVAMCPAQAIDF 115


>gi|295065783|ref|YP_003587723.1| NADH dehydrogenase subunit I [Anomochloa marantoidea]
 gi|251765307|gb|ACT15461.1| NADH dehydrogenase subunit I [Anomochloa marantoidea]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|291279484|ref|YP_003496319.1| hypothetical protein DEFDS_1094 [Deferribacter desulfuricans SSM1]
 gi|290754186|dbj|BAI80563.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 360

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C    C + CPV+      + F  ++ ++CI+C  C   C  DAI+        L++
Sbjct: 302 CIKCYL--CYKSCPVEAISLDNDKFPVVNKNDCIECYCCYEVCESDAIRLKRSLLHRLYV 359


>gi|269962089|ref|ZP_06176443.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3]
 gi|269833173|gb|EEZ87278.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3]
          Length = 197

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
           +T      W K+N+
Sbjct: 165 ETTTESWKW-KLNA 177


>gi|219855628|ref|YP_002472750.1| hypothetical protein CKR_2285 [Clostridium kluyveri NBRC 12016]
 gi|219569352|dbj|BAH07336.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 272

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V ++CI C    C + CP                +C  C  C   CP  AI+ 
Sbjct: 203 FSVEDSCIAC--GLCAKKCPDSAIRMQSGRPMWVKTKCTLCLGCLHRCPKFAIQY 255


>gi|153002852|ref|YP_001368533.1| cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           baltica OS185]
 gi|151367470|gb|ABS10470.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           baltica OS185]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMDRMGYEKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|157960268|ref|YP_001500302.1| formate dehydrogenase subunit beta [Shewanella pealeana ATCC
           700345]
 gi|157845268|gb|ABV85767.1| formate dehydrogenase, beta subunit [Shewanella pealeana ATCC
           700345]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C+ C    C+  C       +  N +     D+C  CG C   CP D  + D    
Sbjct: 97  ACMHCDDPACLTACSTKGAIVQRANGVVDFDSDKCTGCGYCVSACPFDVPRLDPIDQ 153


>gi|90408833|ref|ZP_01216975.1| iron-sulfur cluster-binding protein [Psychromonas sp. CNPT3]
 gi|90310060|gb|EAS38203.1| iron-sulfur cluster-binding protein [Psychromonas sp. CNPT3]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI+CG C   C    +K     GL  +  
Sbjct: 267 CVDCDL--CVQVCPTGIDIREGLQY-----ECINCGACIDACDATMLKMGYPKGLISYTS 319

Query: 69  INS 71
            N 
Sbjct: 320 ENK 322


>gi|78221904|ref|YP_383651.1| electron transfer flavoprotein subunit alpha [Geobacter
          metallireducens GS-15]
 gi|78193159|gb|ABB30926.1| Electron transfer flavoprotein, alpha subunit [Geobacter
          metallireducens GS-15]
          Length = 443

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          +   CI C    C   CPVD     +     I  ++CI C  C   CP DA++ 
Sbjct: 17 IPGKCIAC-GARCQSACPVDAIEMSDAGEPIILSEKCIGCLKCVKVCPADALEM 69



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDC 25
          +++E CI C    CV+VCP D 
Sbjct: 47 ILSEKCIGCLK--CVKVCPADA 66


>gi|73670945|ref|YP_306960.1| putative ATPase RIL [Methanosarcina barkeri str. Fusaro]
 gi|72398107|gb|AAZ72380.1| RNase L inhibitor [Methanosarcina barkeri str. Fusaro]
          Length = 588

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 9/59 (15%)

Query: 6  TENC--ILCKHTDCVEVCPV------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C    C   +C + CP          +E +    I  + C+ CG+C  +CP  AI 
Sbjct: 8  KDKCQPRQCSK-ECEKYCPRVRTGDETIVFEEDGKPVISEELCVGCGICVHKCPFKAIM 65


>gi|26987230|ref|NP_742655.1| formate dehydrogenase, beta subunit [Pseudomonas putida KT2440]
 gi|24981870|gb|AAN66119.1|AE016240_4 formate dehydrogenase, iron-sulfur subunit [Pseudomonas putida
           KT2440]
 gi|313496856|gb|ADR58222.1| Formate dehydrogenase, beta subunit [Pseudomonas putida BIRD-1]
          Length = 316

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 93  KDGCMHCADPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|148262705|ref|YP_001229411.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396205|gb|ABQ24838.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  CK   C  VCP    +     L      CI C  C   CP  A   D     +   +
Sbjct: 195 CTRCKK--CTSVCPTAAIHADAPTLT-DKSSCIRCCACVKCCPAGAKSMDDPRIKQAAEQ 251

Query: 69  INSEYATQWPNITTKKES 86
           +         N + +KE 
Sbjct: 252 L-------TVNCSHRKEP 262


>gi|327401481|ref|YP_004342320.1| cobyrinic acid ac-diamide synthase [Archaeoglobus veneficus SNP6]
 gi|327316989|gb|AEA47605.1| Cobyrinic acid ac-diamide synthase [Archaeoglobus veneficus SNP6]
          Length = 270

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V +  C LC    C EVC  +     ++ + I P+ C  CG C   CP +AI
Sbjct: 58  PVVDSAKCTLC--GKCREVCQYNAIVVLKDSVVIFPEICHSCGACSYFCPEEAI 109


>gi|323148879|ref|YP_004221971.1| NADH-plastoquinone oxidoreductase subunit I [Erodium carvifolium]
 gi|316926343|gb|ADU58196.1| NADH-plastoquinone oxidoreductase subunit I [Erodium carvifolium]
          Length = 171

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECP--VD 53
           + CI C+   CV VCP+D       F            +I    CI CG C   CP    
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKFQTNIRKKRLFNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 54  AIKPDTEPGLELWLKIN 70
           A+  + E       ++N
Sbjct: 120 AMTEEYELSTYDRHELN 136


>gi|291563209|emb|CBL42025.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [butyrate-producing bacterium SS3/4]
          Length = 279

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V++ C+ C    C E CPV      +  +  + + CI C  C   CP  A   + E    
Sbjct: 205 VSDECMGC--GSCAESCPVGAISFEDPKMT-NGEACISCMRCVEICPQSARSGNPEKVQM 261

Query: 65  LWLKI 69
           +  K+
Sbjct: 262 ISEKL 266


>gi|229523193|ref|ZP_04412600.1| electron transport complex protein RnfB [Vibrio cholerae TM
           11079-80]
 gi|229525629|ref|ZP_04415034.1| electron transport complex protein RnfB [Vibrio cholerae bv.
           albensis VL426]
 gi|229339210|gb|EEO04227.1| electron transport complex protein RnfB [Vibrio cholerae bv.
           albensis VL426]
 gi|229339556|gb|EEO04571.1| electron transport complex protein RnfB [Vibrio cholerae TM
           11079-80]
          Length = 195

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G      +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|256828090|ref|YP_003156818.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfomicrobium baculatum DSM 4028]
 gi|256577266|gb|ACU88402.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfomicrobium baculatum DSM 4028]
          Length = 62

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
          V ++ CI C   +CV+VCPV+ +         ++ +EC+ C  C   C  +AI  + 
Sbjct: 7  VDSDKCIGC--GECVDVCPVEVYELQNGKAVPVNEEECLGCESCIEVCEQNAITIEE 61


>gi|257387610|ref|YP_003177383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257169917|gb|ACV47676.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPV 52
            C  C    C   CP       E +  +    D CI C  CE  CP 
Sbjct: 57  PCQHCSEPSCASACPTSARFKREEDGIVLTDYDRCIGCRYCEIGCPY 103


>gi|170691508|ref|ZP_02882673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia graminis C4D1M]
 gi|170143713|gb|EDT11876.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia graminis C4D1M]
          Length = 85

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTE 60
          I  D E
Sbjct: 59 IPRDPE 64


>gi|94968068|ref|YP_590116.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
          versatilis Ellin345]
 gi|94550118|gb|ABF40042.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
          Koribacter versatilis Ellin345]
          Length = 84

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M +V+ + C   K   C++ CP +  +        E  + L I+P+EC+DCG C   CP 
Sbjct: 1  MAHVIVDTCE--KDMLCIDSCPSNAIHPLKEETEWEAASQLYINPEECMDCGACISTCPT 58

Query: 53 DAIK--PDTEPGLELWLKINSEY 73
          ++I    +       ++  N+ Y
Sbjct: 59 NSIYLAEEVPADKAEFVAKNAAY 81


>gi|297578622|ref|ZP_06940550.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536216|gb|EFH75049.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 195

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G      +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|126176519|ref|YP_001052668.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999724|gb|ABN63799.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMDRMGYEKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|332968212|gb|EGK07289.1| ferredoxin [Kingella kingae ATCC 23330]
          Length = 83

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          MT  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MTLFITDECINCD--VCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E        +N  Y
Sbjct: 59 ILIDEEHPETHDELMNKYY 77


>gi|330823669|ref|YP_004386972.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|329309041|gb|AEB83456.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
          Length = 687

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPG 62
           +  + C  C    CV  CP            I    C     C   C V  AI+ D E  
Sbjct: 180 IDLDLCTRCN--ACVAACPEGAIGLD---YQIDMAACTGHRDCVKACAVAGAIRFDREAE 234

Query: 63  LE 64
            +
Sbjct: 235 PQ 236



 Score = 41.1 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV  CP     +      L      C+ CG+CE  CP  AI
Sbjct: 553 VDKDRCTLC--MSCVSACPASALQDNPQAPQLRFIERNCVQCGLCERTCPEGAI 604



 Score = 41.1 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 10  ILCKHTDCVEVCPV--DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           + C    CV++C             + ++P  C+ CG C   CP  A+        ++  
Sbjct: 306 VGCS--ACVDICSAEAIASDPARQQVVVNPHLCVGCGACTTVCPTGAMGYAYPSAQDMGA 363

Query: 68  KINSEYATQ 76
           +I +  AT 
Sbjct: 364 RIRTLLATY 372


>gi|330812393|ref|YP_004356855.1| ferredoxin [Pseudomonas brassicacearum subsp. brassicacearum
          NFM421]
 gi|327380501|gb|AEA71851.1| putative ferredoxin [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 83

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCD--VCEPECPNEAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 IPLD-EAHPETEEQLMAKY 76


>gi|309389694|gb|ADO77574.1| cobyrinic acid ac-diamide synthase [Halanaerobium praevalens DSM
           2228]
          Length = 292

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE C  C+   CV+ C  +      N L +  + C  CG C+  CP +AI    +   
Sbjct: 67  VNTEKCTACRK--CVDFCQYNALALMLNNLLVFEEVCHSCGGCKLVCPENAISEKEKELG 124

Query: 64  ELWLKINSEYATQWPNI--TTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           +++     +    W     T +++++P   K+     K +K    +P G
Sbjct: 125 KIYHDRLEKI-DFWQGELNTGEEKAVPIIRKLKTKINKNKKVIIDSPPG 172


>gi|308746031|ref|YP_003934613.1| NADH-plastoquinone oxidoreductase subunit I [Cheilanthes
           lindheimeri]
 gi|302375464|gb|ADL29838.1| NADH-plastoquinone oxidoreductase subunit I [Cheilanthes
           lindheimeri]
          Length = 175

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 15/79 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++       F             I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWIFMKEVKKKKLRSYTIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKINSE 72
               + E       ++N +
Sbjct: 120 SMTEEFELSSYDRHELNRD 138


>gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 616

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C  C    C + C       E +   AI P++C+ CG+C  +C   A+
Sbjct: 563 IDPEKCTGC--GLCKKNCAFGAISGEKKAPHAIDPEKCVKCGMCLTKCKFGAV 613



 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + CP     +     AI P++C  CG+C+  C   AI  + +   
Sbjct: 547 EKRCPAGVC-KQLIVYAIDPEKCTGCGLCKKNCAFGAISGEKKAPH 591


>gi|295136963|ref|YP_003587797.1| NADH dehydrogenase subunit I [Lathyrus sativus]
 gi|293338685|gb|ADE43657.1| NADH dehydrogenase subunit I [Lathyrus sativus]
          Length = 166

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKMETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|262274542|ref|ZP_06052353.1| electron transport complex protein RnfB [Grimontia hollisae CIP
           101886]
 gi|262221105|gb|EEY72419.1| electron transport complex protein RnfB [Grimontia hollisae CIP
           101886]
          Length = 194

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  ++CI C  T C++ CPVD      +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDDCIGC--TKCIQACPVDAIVGSTKAMHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|253996091|ref|YP_003048155.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
 gi|253982770|gb|ACT47628.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP                ECI CG C   C     K     GL  + 
Sbjct: 270 SCIDCSM--CVQVCPTGIDIRKGLQY-----ECIGCGACADVCDTVMDKMGYARGLIKYS 322

Query: 68  KINS 71
             N+
Sbjct: 323 TQNA 326


>gi|254462535|ref|ZP_05075951.1| cytochrome c oxidase accessory protein CcoG [Rhodobacterales
           bacterium HTCC2083]
 gi|206679124|gb|EDZ43611.1| cytochrome c oxidase accessory protein CcoG [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C  VCPV               ECI C +C   C     K     GL  +L 
Sbjct: 259 CIDC--MACANVCPVGIDIRDGQ-----QMECITCALCIDACDDVMAKIGKPRGLIDYLA 311

Query: 69  INSEYATQ 76
           ++ E A +
Sbjct: 312 LSDEEAER 319


>gi|217975439|ref|YP_002360190.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS223]
 gi|217500574|gb|ACK48767.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS223]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMDRMGYEKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|42520793|ref|NP_966708.1| NADH dehydrogenase subunit I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034611|ref|ZP_01314569.1| hypothetical protein Wendoof_01000619 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|81652312|sp|Q73GH4|NUOI_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|42410533|gb|AAS14642.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 169

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 20/100 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 67  EERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMIKCIYCGLCQEACPVDAI 124

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                P  E   +   E       +  K++ L +    + 
Sbjct: 125 V--EGPNFEFATETREEL------MYNKEKLLRNGEVWED 156


>gi|34556907|ref|NP_906722.1| NADH dehydrogenase subunit I [Wolinella succinogenes DSM 1740]
 gi|81707394|sp|Q7MA42|NUOI_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|34482622|emb|CAE09622.1| NADH DEHYDROGENASE I CHAIN I [Wolinella succinogenes]
          Length = 205

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 12/62 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     ++            I+   CI CG C   CP  AI
Sbjct: 81  NERCIGC--GLCEKICISNCIRMETSYGEDGRKKVHEYTINFGRCIFCGFCAEVCPELAI 138

Query: 56  KP 57
             
Sbjct: 139 VH 140


>gi|16082238|ref|NP_394689.1| hypothetical protein Ta1233 [Thermoplasma acidophilum DSM 1728]
 gi|10640579|emb|CAC12357.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 257

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C+   CV  C V        F+        +C+  G C   CP D I    
Sbjct: 189 CVKCETKACVTACEVGAGDLAGQFIKQGYFKSSKCVGSGSCVLACPYDNIYFYD 242


>gi|187733280|ref|YP_001882231.1| 4Fe-4S binding domain-containing protein [Shigella boydii CDC
           3083-94]
 gi|187430272|gb|ACD09546.1| 4Fe-4S binding domain protein [Shigella boydii CDC 3083-94]
          Length = 157

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C  VC VD        + +    CI C  C   CP  A+
Sbjct: 57  ACHQCEDAPCANVCHVDAISREHGHIFVEQTRCIGCKSCMLACPFGAM 104


>gi|332999463|gb|EGK19048.1| formate hydrogenlyase subunit 6 [Shigella flexneri VA-6]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVDAIKPDT 59
            + CI C    CV  CP +      +          +   CI CG CE  CP  AIK   
Sbjct: 37  PQQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQ 94

Query: 60  EPGLELWLKIN 70
           E  L +W K N
Sbjct: 95  EYELAVWKKEN 105


>gi|323483796|ref|ZP_08089175.1| hypothetical protein HMPREF9474_00924 [Clostridium symbiosum
          WAL-14163]
 gi|323402881|gb|EGA95200.1| hypothetical protein HMPREF9474_00924 [Clostridium symbiosum
          WAL-14163]
          Length = 387

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            + C  C    C   CPV+        EG  +      +CI CG+C   CP        
Sbjct: 8  DNKKCSGCS--ACYNKCPVEAIEMLPDKEGFLYPEADKGKCIGCGLCVDVCPYYKKNIVE 65

Query: 60 EPGLELWLKINS 71
          E     +   N 
Sbjct: 66 EDKQLCFAAFNK 77


>gi|304412678|ref|ZP_07394281.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS183]
 gi|307305857|ref|ZP_07585603.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           BA175]
 gi|304348888|gb|EFM13303.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS183]
 gi|306911350|gb|EFN41776.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           BA175]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMDRMGYEKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|294626911|ref|ZP_06705502.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665011|ref|ZP_06730320.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292598771|gb|EFF42917.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605230|gb|EFF48572.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 142

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 84  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 136


>gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
 gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    C  C    C + CP     +  +    I  ++C+ C  C   CP D I
Sbjct: 561 VDESRCRKC--GLCHKACPAGAVIWAKKQTARIDREKCVRCLACFSACPFDCI 611


>gi|225572231|ref|ZP_03781095.1| hypothetical protein RUMHYD_00525 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040293|gb|EEG50539.1| hypothetical protein RUMHYD_00525 [Blautia hydrogenotrophica DSM
           10507]
          Length = 263

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP +          I  ++C +CG C+  CP   I 
Sbjct: 218 CIGCKK--CEKTCPSEAIKVDNFCAHIDYEKCTNCGACKEVCPRHIIF 263



 Score = 38.8 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  +  CV+ CP D  +       +  + C  CG C  +CP   I
Sbjct: 143 GCLGYGSCVKACPFDAIHIVNGVAVVDKEACKACGKCVAKCPKHLI 188


>gi|167759297|ref|ZP_02431424.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC
          35704]
 gi|167663171|gb|EDS07301.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC
          35704]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          M Y   E C  C++  C   CP       E  +      C  CG C   C  +
Sbjct: 46 MLY-DAERCTGCRN--CEPACPNRAIRGEEGKVFTDMRLCDGCGTCVDFCNQN 95


>gi|157737965|ref|YP_001490649.1| hypothetical protein Abu_1732 [Arcobacter butzleri RM4018]
 gi|157699819|gb|ABV67979.1| hypothetical protein Abu_1732 [Arcobacter butzleri RM4018]
          Length = 289

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-TEP 61
           +   E+CI C    CV+VCP+D       F       C+ CG+CE  C    +K +    
Sbjct: 182 FFDKESCIDCNK--CVKVCPIDELDIKAGF----DIRCVQCGLCEVACEKVMLKFNKLSL 235

Query: 62  GLELWLKIN 70
             + +   N
Sbjct: 236 IKKKFEDRN 244


>gi|85860374|ref|YP_462576.1| iron-sulfur cluster and nucleotide-binding protein [Syntrophus
           aciditrophicus SB]
 gi|85723465|gb|ABC78408.1| iron-sulfur cluster and nucleotide-binding protein [Syntrophus
           aciditrophicus SB]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C+   C EVC           + + P+ C  CG C   CP +AI
Sbjct: 65  VDEEKCTGCR--VCAEVCEYHALAVLGKNVLVFPELCHACGACVRFCPEEAI 114


>gi|37528694|ref|NP_932039.1| formate dehydrogenase-O, iron-sulfur subunit (formate
           dehydrogenase-O beta subunit) (FDH-Z beta subunit)
           (aerobic formate dehydrogenase iron-sulfur subunit)
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36788133|emb|CAE17260.1| formate dehydrogenase-O, iron-sulfur subunit (formate
           dehydrogenase-O beta subunit) (FDH-Z beta subunit)
           (aerobic formate dehydrogenase iron-sulfur subunit)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 309

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +      CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINKEDN 155


>gi|167038500|ref|YP_001666078.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167038757|ref|YP_001661742.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter sp. X514]
 gi|256751369|ref|ZP_05492248.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913657|ref|ZP_07130974.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X561]
 gi|307723328|ref|YP_003903079.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter sp. X513]
 gi|320116895|ref|YP_004187054.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166852997|gb|ABY91406.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X514]
 gi|166857334|gb|ABY95742.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749751|gb|EEU62776.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890342|gb|EFK85487.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X561]
 gi|307580389|gb|ADN53788.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X513]
 gi|319929986|gb|ADV80671.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 271

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    CV+ CP +          I+ ++C +CG+C  +CP   I    E   + 
Sbjct: 215 CIGC--QICVKSCPENAITFENYLAKINYEKCTNCGICAEKCPTGTIFSSLEQVRKK 269



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    CV+VC             I  ++C+ C  C   CP   I
Sbjct: 141 CLGC--GTCVDVCDYGAIQIINGVAVIDKEKCVACKACIEVCPKGII 185



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 23/98 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDE---------------CIDCGV 45
             +  E C+ CK   C+EVCP             I   +               CI C +
Sbjct: 163 AVIDKEKCVACK--ACIEVCPKGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQI 220

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTK 83
           C   CP +AI  +         KIN E  T       K
Sbjct: 221 CVKSCPENAITFE-----NYLAKINYEKCTNCGICAEK 253


>gi|320667607|gb|EFX34522.1| putative polyferredoxin [Escherichia coli O157:H7 str. LSU-61]
          Length = 284

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            CVE CP       E  +A+  ++CIDC VC+  CP +AI+    P
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIRGVNSP 69



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             + C LC    C   C    F   E  L I+   C  C  C   C   A+  +
Sbjct: 185 DPQKCQLC--GACWRACEQQVFSLNEGHLQINDALCNGCQNCIAVCFHQAMTVE 236


>gi|309379794|emb|CBX21570.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 162

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 60  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 117


>gi|290489794|gb|ADD31304.1| NADH-plastoquinone oxidoreductase subunit I protein [Trochodendron
           aralioides]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|237756589|ref|ZP_04585108.1| respiratory nitrate reductase 1 beta chain [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691246|gb|EEP60335.1| respiratory nitrate reductase 1 beta chain [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 287

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           + +   C  C +  C+  CP +  ++ E    + +  + C     C   CP   I  
Sbjct: 124 FYIPRICNHCSNPGCLAACPREAIFKREQDGIVLVDLERCQGYRYCIAGCPYKKIYF 180


>gi|261379572|ref|ZP_05984145.1| NADH dehydrogenase, I subunit [Neisseria subflava NJ9703]
 gi|269214461|ref|ZP_05986605.2| NADH dehydrogenase, I subunit [Neisseria lactamica ATCC 23970]
 gi|296313738|ref|ZP_06863679.1| NADH dehydrogenase, I subunit [Neisseria polysaccharea ATCC 43768]
 gi|313669276|ref|YP_004049560.1| NADH dehydrogenase I chain I [Neisseria lactamica ST-640]
 gi|261391783|emb|CAX49238.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I;
           NDH-1, chain I) [Neisseria meningitidis 8013]
 gi|269209739|gb|EEZ76194.1| NADH dehydrogenase, I subunit [Neisseria lactamica ATCC 23970]
 gi|284798046|gb|EFC53393.1| NADH dehydrogenase, I subunit [Neisseria subflava NJ9703]
 gi|296839661|gb|EFH23599.1| NADH dehydrogenase, I subunit [Neisseria polysaccharea ATCC 43768]
 gi|308388470|gb|ADO30790.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha710]
 gi|313006738|emb|CBN88208.1| NADH dehydrogenase I chain I [Neisseria lactamica 020-06]
 gi|325130978|gb|EGC53705.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           OX99.30304]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 114


>gi|254491482|ref|ZP_05104661.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224462960|gb|EEF79230.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 517

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V  + C LC    CV VCPV    +G +   ++  E  C+ CG+C+  CP DAI
Sbjct: 390 VDKQACTLC--MSCVSVCPVGAVVDGVDKPQLNFIEDLCVQCGICDTACPEDAI 441



 Score = 40.7 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 10  ILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
             C  T+C++ CP       G + + ++P  C  CG C   CP  AI           + 
Sbjct: 158 KGC--TNCIDACPAGAVESSGWDLINVNPSLCQGCGSCTVVCPSGAISYALPTLD---IS 212

Query: 69  INS 71
           IN 
Sbjct: 213 INR 215


>gi|170289901|ref|YP_001736717.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173981|gb|ACB07034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 171

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C+E CP       +   + I  + C  CG C   CP  AI+  
Sbjct: 58  CRFCEPAPCMEACPTGSIRRNDIGAIVIFEETCSSCGNCINSCPYGAIRMH 108


>gi|52424976|ref|YP_088113.1| electron transport complex protein RnfB [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307028|gb|AAU37528.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 196

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      ++   + PD C  C +C   CP D IK 
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIIGTNKSLHTVIPDLCTGCELCVAPCPTDCIKM 160


>gi|53718157|ref|YP_107143.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|53724088|ref|YP_104608.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76809059|ref|YP_332163.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121599810|ref|YP_991443.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124384667|ref|YP_001027481.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126439656|ref|YP_001057618.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 668]
 gi|126450276|ref|YP_001082447.1| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|126453640|ref|YP_001064864.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1106a]
 gi|134279445|ref|ZP_01766157.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 305]
 gi|167718011|ref|ZP_02401247.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei DM98]
 gi|167737028|ref|ZP_02409802.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 14]
 gi|167814137|ref|ZP_02445817.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 91]
 gi|167822662|ref|ZP_02454133.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 9]
 gi|167844233|ref|ZP_02469741.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei B7210]
 gi|167892743|ref|ZP_02480145.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 7894]
 gi|167901239|ref|ZP_02488444.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei NCTC 13177]
 gi|167909457|ref|ZP_02496548.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 112]
 gi|167917485|ref|ZP_02504576.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei BCC215]
 gi|217419688|ref|ZP_03451194.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 576]
 gi|226199554|ref|ZP_03795111.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei Pakistan 9]
 gi|238561330|ref|ZP_00442188.2| iron-sulfur cluster-binding protein [Burkholderia mallei GB8
          horse 4]
 gi|242316665|ref|ZP_04815681.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1106b]
 gi|254174705|ref|ZP_04881366.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|254181869|ref|ZP_04888466.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1655]
 gi|254187803|ref|ZP_04894315.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei Pasteur 52237]
 gi|254196729|ref|ZP_04903153.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei S13]
 gi|254201695|ref|ZP_04908059.1| ferredoxin [Burkholderia mallei FMH]
 gi|254207029|ref|ZP_04913380.1| ferredoxin [Burkholderia mallei JHU]
 gi|254260260|ref|ZP_04951314.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1710a]
 gi|254296079|ref|ZP_04963536.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 406e]
 gi|254357508|ref|ZP_04973782.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|52208571|emb|CAH34507.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|52427511|gb|AAU48104.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76578512|gb|ABA47987.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121228620|gb|ABM51138.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124292687|gb|ABN01956.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126219149|gb|ABN82655.1| ferredoxin [Burkholderia pseudomallei 668]
 gi|126227282|gb|ABN90822.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1106a]
 gi|126243146|gb|ABO06239.1| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|134248645|gb|EBA48727.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 305]
 gi|147747589|gb|EDK54665.1| ferredoxin [Burkholderia mallei FMH]
 gi|147752571|gb|EDK59637.1| ferredoxin [Burkholderia mallei JHU]
 gi|148026572|gb|EDK84657.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|157805773|gb|EDO82943.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 406e]
 gi|157935483|gb|EDO91153.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei Pasteur 52237]
 gi|160695750|gb|EDP85720.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|169653472|gb|EDS86165.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei S13]
 gi|184212407|gb|EDU09450.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1655]
 gi|217396992|gb|EEC37008.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 576]
 gi|225928435|gb|EEH24465.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei Pakistan 9]
 gi|238524794|gb|EEP88225.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8
          horse 4]
 gi|242139904|gb|EES26306.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1106b]
 gi|254218949|gb|EET08333.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1710a]
          Length = 88

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ ++Y
Sbjct: 59 IPQD-PGRPETKDQLMAKY 76


>gi|309775696|ref|ZP_07670694.1| CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916535|gb|EFP62277.1| CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 57

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV VCPV       E         CIDCG C   CPV AI
Sbjct: 5  VDVDTCIGC--GACVGVCPVGALSMNDEGKSVCDEGTCIDCGSCVSACPVSAI 55


>gi|302387729|ref|YP_003823551.1| PAS/PAC sensor protein [Clostridium saccharolyticum WM1]
 gi|302198357|gb|ADL05928.1| putative PAS/PAC sensor protein [Clostridium saccharolyticum WM1]
          Length = 577

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C+  C V      +    I PD+C+ CG C   CP  A
Sbjct: 10 KCKHCYK--CIRNCEVKAVMIKDERAEIMPDKCVLCGKCMQVCPQSA 54


>gi|297568097|ref|YP_003689441.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924012|gb|ADH84822.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 606

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 17/72 (23%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFY--------------EGENFLAIHPDECIDCGVCE 47
           + VTENC  C  T C+ + CP   +               + + +  I+ D CI CG C 
Sbjct: 534 HSVTENCTGC--TMCLRLGCPAINWQPLTPEEAKAMGKKEKQKGYALINEDMCIGCGQCY 591

Query: 48  PECPVDAIKPDT 59
             C  +AI  + 
Sbjct: 592 ELCKFEAISKEE 603


>gi|145589581|ref|YP_001156178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047987|gb|ABP34614.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 696

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPDTEPG 62
           +  E C  C    CVEVCP            I+ D+C     C   C  + AI  D    
Sbjct: 185 IDPEMCTRC--GACVEVCPEGAIDLSFQ---INLDKCKSHRSCVTACASIGAISFDRADR 239

Query: 63  LELWLKINSEY 73
                K NSE+
Sbjct: 240 -----KRNSEF 245



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--- 58
           +  + C LC    CV  CP         E  L+    +C+ CG+C   CP  A+  D   
Sbjct: 569 INKDACTLC--MSCVSSCPEGALLDNPDEPILSFIEKQCVQCGICVQTCPEHALTLDPRL 626

Query: 59  -TEPGLELWLKINSEYATQW 77
            T    +    +N   A   
Sbjct: 627 QTIEERKKKTALNEAQAFHC 646



 Score = 38.0 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 10  ILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C    C++VC        F  G+  + ++P+ C+ CG C   CP  A++ +  
Sbjct: 311 VGCN--ACIDVCSTGAISSLFKGGQGSVEVNPNLCMGCGACSTVCPSGAMRYNYP 363


>gi|56476886|ref|YP_158475.1| electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
 gi|56312929|emb|CAI07574.1| Electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT-EPGL 63
            E CI C  T C++VCP D    G   +  +  D C  CG C   CP +A+        L
Sbjct: 107 EEICIGC--TRCIKVCPTDAILGGPKQIHNVLRDACTGCGSCIERCPTEAMAMQPLPVTL 164

Query: 64  ELWL 67
           + W+
Sbjct: 165 QQWV 168


>gi|332968226|gb|EGK07303.1| NADH-quinone oxidoreductase subunit I [Kingella kingae ATCC 23330]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEQREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 114


>gi|332374474|gb|AEE62378.1| unknown [Dendroctonus ponderosae]
          Length = 609

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V  + C    C+  +C + CPV                  I  + CI CG+C  +CP DA
Sbjct: 20 VNADKCKPKRCR-QECKKSCPVVRMGKLCIEVSPNSKIAVISEELCIGCGICVKKCPFDA 78

Query: 55 IK 56
          I 
Sbjct: 79 IN 80


>gi|310828880|ref|YP_003961237.1| hypothetical protein ELI_3312 [Eubacterium limosum KIST612]
 gi|308740614|gb|ADO38274.1| hypothetical protein ELI_3312 [Eubacterium limosum KIST612]
          Length = 383

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCP------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             ++ E C+ C    CV  CP                   +  +CI C  C+  CP  AI
Sbjct: 312 PVIIEERCVRC--GICVASCPLEDKALTWKETRNGRVPHYNYHKCIRCYCCQEMCPKKAI 369

Query: 56  KPDTE 60
              T 
Sbjct: 370 TVKTP 374


>gi|284999078|ref|YP_003420846.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus L.D.8.5]
 gi|284446974|gb|ADB88476.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus L.D.8.5]
          Length = 94

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V    CI CK   C   CP        + + +  + C  CGVC   CPV AI    E
Sbjct: 37 PVVDYNKCIGCK--VCFMFCPESTIVPSNDKVRVDYEYCKGCGVCANVCPVKAISMVNE 93


>gi|300913954|ref|ZP_07131271.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X561]
 gi|307725361|ref|YP_003905112.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X513]
 gi|300890639|gb|EFK85784.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X561]
 gi|307582422|gb|ADN55821.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X513]
          Length = 578

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          NC  C    CV  CPV           +    CI CG C  ECP +A K   +       
Sbjct: 10 NCKNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCVIECPQNAKKIRNDLHAVK-E 66

Query: 68 KINS 71
           IN+
Sbjct: 67 FINA 70


>gi|269861875|ref|XP_002650615.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220065879|gb|EED43441.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 379

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 6  TENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C      +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 14 PDKC----AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 63


>gi|161502296|ref|YP_001569408.1| hypothetical protein SARI_00327 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863643|gb|ABX20266.1| hypothetical protein SARI_00327 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 344

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CI C    C++ C    V C              CI CG C   CP  A +   E   
Sbjct: 185 ERCIGC--GACMKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLAWQRKPEQLW 242

Query: 64  E 64
           +
Sbjct: 243 Q 243


>gi|156937202|ref|YP_001434998.1| ferredoxin-dependent glutamate synthase [Ignicoccus hospitalis
           KIN4/I]
 gi|156566186|gb|ABU81591.1| ferredoxin-dependent glutamate synthase [Ignicoccus hospitalis
           KIN4/I]
          Length = 717

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 1   MT-YVVT---ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           M  Y V    + CI C    C  VCP +               +CI C  C   CP DA+
Sbjct: 231 MPKYRVEFKYDICIGC--GTCAMVCPENVIKMKGYKPVAAREADCIGCYACVNYCPTDAV 288

Query: 56  KPD 58
           K +
Sbjct: 289 KVE 291


>gi|56698344|ref|YP_168717.1| iron-sulfur-binding protein RdxA/RdxB/FixG family [Ruegeria
           pomeroyi DSS-3]
 gi|56680081|gb|AAV96747.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Ruegeria
           pomeroyi DSS-3]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCPV         L     ECI C +C   C     K     GL  ++ 
Sbjct: 260 CIDC--MACVNVCPVGIDIRDGQQL-----ECITCALCIDACDDMMEKIGKPRGLIDYMA 312

Query: 69  INSEYATQ 76
           +  E A +
Sbjct: 313 LKDEEAER 320


>gi|34496625|ref|NP_900840.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Chromobacterium violaceum ATCC 12472]
 gi|34102480|gb|AAQ58845.1| probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Chromobacterium violaceum ATCC 12472]
          Length = 477

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCPV               ECI C  C   C     K     GL  + 
Sbjct: 270 SCINCS--ICVQVCPVGIDIRNGLQY-----ECIGCAACIDACDEVMDKMGYPRGLIRYT 322

Query: 68  KINS 71
             N+
Sbjct: 323 TENA 326


>gi|294678804|ref|YP_003579419.1| electron transport complex protein RnfB [Rhodobacter capsulatus SB
           1003]
 gi|17380288|sp|Q07394|RNFB_RHOCA RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|216928|dbj|BAA02787.1| ORFU3 product, potential iron-sulfur protein [Rhodobacter
           capsulatus]
 gi|435526|emb|CAA51400.1| rnfB [Rhodobacter capsulatus]
 gi|1905809|emb|CAA72669.1| RnfB protein [Rhodobacter capsulatus]
 gi|294477624|gb|ADE87012.1| electron transport complex protein RnfB [Rhodobacter capsulatus SB
           1003]
 gi|742356|prf||2009377C rnfB protein
          Length = 187

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  ++C  C    C + CP D    G +    +  D CI C  C   CP +AI    +
Sbjct: 105 AFVFEDHCTGC--QKCFKRCPTDAIVGGAKQIHTVVMDACIGCDACIEVCPTEAIVSRVK 162

Query: 61  PGLEL 65
           P    
Sbjct: 163 PKTLK 167


>gi|117927484|ref|YP_872035.1| NADH dehydrogenase subunit I [Acidothermus cellulolyticus 11B]
 gi|156632698|sp|A0LRI9|NUOI_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|117647947|gb|ABK52049.1| NADH dehydrogenase subunit I [Acidothermus cellulolyticus 11B]
          Length = 199

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 18/75 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG C   C
Sbjct: 53  EKCIGCEL--CAWACPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIFCGYCIEAC 110

Query: 51  PVDAIKPDTEPGLEL 65
           P  A+    E  L  
Sbjct: 111 PTRALTMSNEYELAD 125


>gi|320646306|gb|EFX15233.1| putative polyferredoxin [Escherichia coli O157:H- str. 493-89]
 gi|320651811|gb|EFX20191.1| putative polyferredoxin [Escherichia coli O157:H- str. H 2687]
          Length = 284

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            CVE CP       E  +A+  ++CIDC VC+  CP +AI+    P
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIRGVNSP 69



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             + C LC    C   C    F   E  L I+   C  C  C   C   A+  +
Sbjct: 185 DPQKCQLC--GACWRACEQQVFSLNEGHLQINDALCNGCQNCIAVCFHQAMTVE 236


>gi|320640863|gb|EFX10351.1| putative polyferredoxin [Escherichia coli O157:H7 str. G5101]
          Length = 284

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            CVE CP       E  +A+  ++CIDC VC+  CP +AI+    P
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIRGVNSP 69



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             + C LC    C   C    F   E  L I+   C  C  C   C   A+  +
Sbjct: 185 DPQKCQLC--GACWRACEQQVFSLNEGHLQINDALCNGCQNCIAVCFHQAMTAE 236


>gi|312793683|ref|YP_004026606.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180823|gb|ADQ40993.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 578

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YV  E C  CK   C+ + CP     E      I  + C+ CG+CE  C   AI    E
Sbjct: 524 YVDFEKCKNCK--VCLSLGCPAISIKE---KPTIDENLCLACGMCEDVCKFGAISSQKE 577


>gi|301058977|ref|ZP_07199946.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446973|gb|EFK10769.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 181

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    C+  CP D  +    +  + +  + C  C  C   CP    +   +  ++ 
Sbjct: 56  ACLHCTTPACMAACPADAIFRNAEDGRVLVDTERCTGCRTCARACPFGVPQFGEDKTMQK 115


>gi|238921563|ref|YP_002935078.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Edwardsiella ictaluri 93-146]
 gi|238871132|gb|ACR70843.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Edwardsiella ictaluri 93-146]
          Length = 317

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCADPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRMNPEDK 155


>gi|167761283|ref|ZP_02433410.1| hypothetical protein CLOSCI_03688 [Clostridium scindens ATCC 35704]
 gi|167660949|gb|EDS05079.1| hypothetical protein CLOSCI_03688 [Clostridium scindens ATCC 35704]
          Length = 604

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +V  ++C  C+       CP       +   AI P  C  CG+C   C  +AI+      
Sbjct: 547 HVAADSCTFCRQCIRELGCP--AIVIEDGKAAIEPSLCSGCGICAQVCKFNAIQEVDHDE 604


>gi|153808048|ref|ZP_01960716.1| hypothetical protein BACCAC_02334 [Bacteroides caccae ATCC 43185]
 gi|149129657|gb|EDM20871.1| hypothetical protein BACCAC_02334 [Bacteroides caccae ATCC 43185]
          Length = 258

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T++CI CK   C +VCPVD     +         C  C  C   CP  A++ 
Sbjct: 188 FYATDSCISCK--RCEKVCPVDNVKLQKGRPV-WGKNCTSCLACYHVCPQQAVQY 239


>gi|150399527|ref|YP_001323294.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012230|gb|ABR54682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 253

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C+ C    C E+CPV         + +    CI CG CE  CPV AI  +
Sbjct: 195 FLDNEKCVDC--MVCSEICPVSAITYENGKMVVSKPVCIFCGKCEKNCPVTAISIE 248



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  ++CI C    C + CP D    E +N + I+ + C+ C  CE  CP  +IK + E G
Sbjct: 129 IDMDSCIKC--GICEKFCPTDAITVERKNSIDINLNLCMGCTACEKVCPKKSIKVENEMG 186

Query: 63  LELWLK 68
              + K
Sbjct: 187 KIDFKK 192



 Score = 33.8 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
          YV +  CI C    C E CPV    +        I P+ C+ C +C   CPV AI 
Sbjct: 42 YVESSKCIRCNL--CFEECPVSAIKKPSVKNPAEIIPENCVKCEICAKTCPVSAIN 95


>gi|117617460|ref|YP_857144.1| electron transport complex protein RnfB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|166225078|sp|A0KLJ3|RNFB_AERHH RecName: Full=Electron transport complex protein rnfB
 gi|117558867|gb|ABK35815.1| electron transport complex, RnfABCDGE type, B subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 187

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    +  DEC  C +C   CP D I+ 
Sbjct: 108 AFIHEDQCIGC--TKCIQACPVDAIVGATKAMHTVIADECTGCDLCVDPCPTDCIEM 162



 Score = 34.2 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
           M  V+ + C  C    CV+ CP DC         +   +
Sbjct: 137 MHTVIADECTGCDL--CVDPCPTDCIEMIPVPTTVDNWK 173


>gi|118580088|ref|YP_901338.1| thiamine pyrophosphate binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118502798|gb|ABK99280.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Pelobacter propionicus DSM 2379]
          Length = 594

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAI 55
           V  + C  C+   C+++ CP   +  G+  +    I+P  C  C VC   C  DAI
Sbjct: 537 VDEQACSGCR--ACLKLGCPAIEWRPGDGKIGKAYINPQLCTGCDVCRQLCSFDAI 590


>gi|328952814|ref|YP_004370148.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453138|gb|AEB08967.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1029

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 8    NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
            NC  C    C+ +CP      GE     IH + C  CG+C  +CP  AI  
Sbjct: 956  NCRRCL--SCLAICPFGAVSLGEKGRPTIHVELCRGCGLCAAQCPAQAISM 1004



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 25/87 (28%), Gaps = 27/87 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID-- 42
           YV    C  C   +C  VCPV                             I+P  C    
Sbjct: 116 YVNISACTGC--GECTRVCPVKMPDPYNQGLNQTKAIHLPFPQAVPLAAIINPQVCRFFQ 173

Query: 43  ---CGVCEPECPVDAIKPDTEPGLELW 66
              CG C   CP  AI    +P  E W
Sbjct: 174 GKKCGACIKVCPAGAINLQEQP--EEW 198


>gi|326560090|gb|EGE10480.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 46P47B1]
 gi|326564196|gb|EGE14432.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 12P80B1]
          Length = 275

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ E  CI C  T C+  CPVD      ++  +I  D C  C +C   CPVD I
Sbjct: 112 IIQEADCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163


>gi|322835430|ref|YP_004215456.1| polyferredoxin [Rahnella sp. Y9602]
 gi|321170631|gb|ADW76329.1| putative polyferredoxin [Rahnella sp. Y9602]
          Length = 293

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 3   YVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V  +   C+LC    C  VCP          L + P +C  CG CE  C   AI     
Sbjct: 189 HVDLDKHRCVLC--GACSRVCPEQAIRLDNLALTLDPVKCTGCGNCEAVCFDGAISVSAR 246

Query: 61  PGLE 64
              E
Sbjct: 247 ENSE 250



 Score = 41.5 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 16 DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C +VCP       E   + + P  CI CG C   CP  A +    P 
Sbjct: 31 ACADVCPTGAVTLNEEGMIEMDPQACIGCGYCLFNCPTGAPEGIAPPQ 78


>gi|312136376|ref|YP_004003713.1| methanogenesis marker 16 metalloprotein [Methanothermus fervidus
           DSM 2088]
 gi|311224095|gb|ADP76951.1| methanogenesis marker 16 metalloprotein [Methanothermus fervidus
           DSM 2088]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            + C+ CK     ++CP D F   E    I   +C  C VC   C 
Sbjct: 320 KDKCLKCKECKIEKICPTDAFKPKEG---IDFKKCFGCSVCAHHCK 362


>gi|294494959|ref|YP_003541452.1| cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
 gi|292665958|gb|ADE35807.1| Cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
          Length = 274

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  + C  C    C + C  +        + + PD C  CG C   CP DAI
Sbjct: 59  PVIDEQKCDHC--GKCADFCNYNALAALPQKVMVFPDLCHGCGGCSLVCPHDAI 110


>gi|283956943|ref|ZP_06374415.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791444|gb|EFC30241.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICISNCIRMETSLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 56  KPDTEPG 62
              TE  
Sbjct: 138 VHGTEYE 144


>gi|256831152|ref|YP_003159880.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256580328|gb|ACU91464.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 256

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    C  VCPV    + E    +      CI C  C   CP  A   +    +  
Sbjct: 73  PCMQCGRPSCSTVCPVVATLKDEEGGIVSQVYPRCIGCRYCMAACPYHARYFNWFDPIWP 132


>gi|309322123|ref|YP_003933939.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum]
 gi|197131380|gb|ACH47208.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum]
 gi|300069216|gb|ADJ66338.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum]
          Length = 171

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECP--VD 53
           + CI C+   CV VCP            D   +     +I    CI CG C   CP    
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKFQTDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 54  AIKPDTEPGLELWLKIN 70
           A+  + E       ++N
Sbjct: 120 AMTEEYELSTYDRHELN 136


>gi|167918137|ref|ZP_02505228.1| ferredoxin [Burkholderia pseudomallei BCC215]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|153956245|ref|YP_001397010.1| ATP-binding protein [Clostridium kluyveri DSM 555]
 gi|219856567|ref|YP_002473689.1| hypothetical protein CKR_3224 [Clostridium kluyveri NBRC 12016]
 gi|146349103|gb|EDK35639.1| Predicted ATP-binding protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219570291|dbj|BAH08275.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  E CI C    CVEVC  +   + +  + +    C  CG C+  C  +A+  
Sbjct: 58  PFIDDEKCISC--GLCVEVCEFNALAKVKGDIILFQKLCHGCGACKIICKQNALSY 111


>gi|332305199|ref|YP_004433050.1| cytochrome c oxidase accessory protein CcoG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172528|gb|AEE21782.1| cytochrome c oxidase accessory protein CcoG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 457

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCPV               ECI+CG+C   C     K +   GL  +  
Sbjct: 261 CVDC--GLCVDVCPVGIDIRQGLQY-----ECINCGLCADACNDVMQKFNYPQGLIKYTA 313

Query: 69  ---INSEYATQ 76
              I  +++  
Sbjct: 314 KHVIKRQWSAH 324


>gi|310777922|ref|YP_003966255.1| 6-hydroxynicotinate reductase [Ilyobacter polytropus DSM 2926]
 gi|309747245|gb|ADO81907.1| 6-hydroxynicotinate reductase [Ilyobacter polytropus DSM 2926]
          Length = 505

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  +  + C  CK   C   CP+      +    I  D C+ CG+C   CP  AI+  TE
Sbjct: 1  MIKIDLKKCKGCK--ICANNCPISAIDMLDKKALI-KDNCVSCGICLRVCPFAAIEKTTE 57

Query: 61 PGLELWLKINS 71
                   N 
Sbjct: 58 ENNNSMKCTNC 68


>gi|317055672|ref|YP_004104139.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Ruminococcus albus 7]
 gi|315447941|gb|ADU21505.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ruminococcus albus 7]
          Length = 257

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T+ C  C    C +VCP               ++C+ C  C   CP  AI+         
Sbjct: 186 TDKCTGC--GRCADVCPYGSISIVGGRPV-WGEKCMHCMSCICGCPTGAIEYGRSTVGRD 242

Query: 66  WLKINSEYATQWPNIT 81
                     + PNIT
Sbjct: 243 -----RYLCRKKPNIT 253


>gi|293401520|ref|ZP_06645663.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305158|gb|EFE46404.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    C + CP    +  +         C  C  C   C  DA++   E     
Sbjct: 52  KCVSC--HTCEQSCPQKAIHFQKGRFHHDAQRCNGCQSCVEMCLQDALQLRGEDMESK 107


>gi|257790263|ref|YP_003180869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Eggerthella lenta DSM 2243]
 gi|325830362|ref|ZP_08163819.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257474160|gb|ACV54480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
          lenta DSM 2243]
 gi|325487829|gb|EGC90267.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 394

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C +VC   C    +N L I P+ CI CG C   CP  A++       E
Sbjct: 37 MKCADVCTSGCISYDDNELVIEPERCIGCGTCATVCPTCALEAHRPNDAE 86



 Score = 34.2 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 12/101 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C   CP     +     G   +   P +C+ C  C   CP  A++  
Sbjct: 290 IDPEKCSSC--QMCATFCPTGAIAKYAGEDGSIGVTHRPVDCVKCRCCTDICPEGALELS 347

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAK-MDGVKQ 98
            E      L    E     P     K    +  +    +K 
Sbjct: 348 DEVFAVDLLSGAQERYPMKPL----KNPPGNPHQIWHSMKD 384


>gi|225568763|ref|ZP_03777788.1| hypothetical protein CLOHYLEM_04842 [Clostridium hylemonae DSM
           15053]
 gi|225162262|gb|EEG74881.1| hypothetical protein CLOHYLEM_04842 [Clostridium hylemonae DSM
           15053]
          Length = 203

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ C  C    C  +CP  C  +G     I  + C+ CG+C   CPV A+
Sbjct: 149 YRITDQCTGC--GVCQNICPQQCIRKGTP-CEIAQEHCLHCGLCYENCPVRAV 198


>gi|219853264|ref|YP_002467696.1| glutamate synthase (NADPH) [Methanosphaerula palustris E1-9c]
 gi|219547523|gb|ACL17973.1| Glutamate synthase (NADPH) [Methanosphaerula palustris E1-9c]
          Length = 502

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
          + ++ C+LC    CV+ C    F + E  +AI +P  C  C  C   CP DAI    +P 
Sbjct: 13 IDSDQCMLC--GRCVDNCSYGVFQKEEERIAIVNPRNCTACHRCIAMCPRDAISLKEKPL 70

Query: 63 L 63
           
Sbjct: 71 D 71


>gi|126179962|ref|YP_001047927.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanoculleus marisnigri JR1]
 gi|125862756|gb|ABN57945.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanoculleus marisnigri JR1]
          Length = 57

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +  E C  C+   CV  CP       +    I    CIDCG C  ECP  A++ +
Sbjct: 5  IDPELCTGCE--TCVGACPAGAIRMEDVKPKIDTGLCIDCGTCVDECPTGAVRLE 57


>gi|121533411|ref|ZP_01665239.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Thermosinus carboxydivorans Nor1]
 gi|121307970|gb|EAX48884.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Thermosinus carboxydivorans Nor1]
          Length = 604

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C  C    CV    CP       +    I    C  CGVC   C   A+
Sbjct: 554 VDTDICNGCSL--CVRTFGCP--AITIVDGKAVIEASACNGCGVCTYVCKRGAL 603


>gi|118467785|ref|YP_886416.1| NADH dehydrogenase subunit I [Mycobacterium smegmatis str. MC2 155]
 gi|156633527|sp|A0QU28|NUOI_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118169072|gb|ABK69968.1| NADH-quinone oxidoreductase, I subunit [Mycobacterium smegmatis
           str. MC2 155]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTADERYSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|91200370|emb|CAJ73416.1| strongly similar to NADH dehydrogenase I chain I [Candidatus
           Kuenenia stuttgartiensis]
          Length = 171

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC                F  I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVGCYL--CAAVCPVDCISLQATEDEYGRRYPEFFRINFSRCIFCGFCEDACPTYAIQ 106


>gi|323702415|ref|ZP_08114079.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574]
 gi|323532554|gb|EGB22429.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574]
          Length = 328

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            CI C    CV+ C              +   P  CI CG C  +CP  A
Sbjct: 175 RCIGC--QACVKNCKKVSTGALTFENYKVKRDPLRCIGCGECVLKCPTAA 222


>gi|301308715|ref|ZP_07214667.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300833239|gb|EFK63857.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 258

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI C    C +VCP        +      D C+ C  C   CPV AI+ 
Sbjct: 190 FYATDTCISC--GICAKVCPTGTISLSGDGKPEWADTCVQCVACIHRCPVRAIEY 242


>gi|269217236|ref|ZP_06161090.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269129373|gb|EEZ60458.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 205

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           Y V+  C  C    CV+ CP     + E    +    + CI C  CE  CP +
Sbjct: 61  YYVSMTCGQCADPQCVKNCPTGAMAKDEETGIVNNDKEICIGCMTCEQVCPYN 113


>gi|238023170|ref|ZP_04603596.1| hypothetical protein GCWU000324_03096 [Kingella oralis ATCC 51147]
 gi|237865553|gb|EEP66693.1| hypothetical protein GCWU000324_03096 [Kingella oralis ATCC 51147]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 114


>gi|226329954|ref|ZP_03805472.1| hypothetical protein PROPEN_03867 [Proteus penneri ATCC 35198]
 gi|225200749|gb|EEG83103.1| hypothetical protein PROPEN_03867 [Proteus penneri ATCC 35198]
          Length = 294

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 4  VVTENCIL-------CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++ + C+        C    C +VCPV         + I  + C  CG C   CPVDAI+
Sbjct: 14 IINDKCVRKRLKQSLCD--SCSKVCPVGAITFAHLDVKIDNERCFQCGNCLFTCPVDAIE 71

Query: 57 PDTE---PGLELWLKINSE 72
                    + +L +N +
Sbjct: 72 NIAPHERTYQDNYLVVNHD 90



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            TE CILC    C +VC         N   +    C  C  CE  C   +I 
Sbjct: 195 DTETCILCS--ACAKVCDEGAIELENNIFTLDEKRCTGCMSCEVVCFPKSIH 244


>gi|167771609|ref|ZP_02443662.1| hypothetical protein ANACOL_02981 [Anaerotruncus colihominis DSM
           17241]
 gi|167666249|gb|EDS10379.1| hypothetical protein ANACOL_02981 [Anaerotruncus colihominis DSM
           17241]
          Length = 274

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    CI CK   C   C        +N  +I P++C++CG C   CP  AI
Sbjct: 211 VCKNGCIGCKK--CERTCEHGAITVTDNLASIDPEKCVNCGNCVTACPTGAI 260



 Score = 39.6 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  + DC+  C        +    I    C+ CG+C   CP   I
Sbjct: 141 GCLGYGDCINACQYGAISIVDGIAVIDKAACVGCGMCAKACPNQLI 186


>gi|126207654|ref|YP_001052879.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae L20]
 gi|307256192|ref|ZP_07537979.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|126096446|gb|ABN73274.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|306865373|gb|EFM97269.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 196

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD      +    + PD C  C +C   CP + I+ 
Sbjct: 106 EDMCIGC--TKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIEM 156


>gi|150399419|ref|YP_001323186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012122|gb|ABR54574.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 132

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV  CPV       +  + +  DECI C  C   CPV+AI
Sbjct: 82  CIDC--GSCVVHCPVGALSVDSDYKILLDEDECIGCKNCAKVCPVNAI 127


>gi|257076190|ref|ZP_05570551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroplasma
          acidarmanus fer1]
          Length = 88

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V TE C +C    C++VCP   + E  EN +++H + C++CG     CP  A++      
Sbjct: 22 VNTEMCKICVDKPCIKVCPAGTYEEDKENGISVHYERCLECGAALYACPFGALQFKYPEK 81

Query: 63 LELWL 67
             ++
Sbjct: 82 GVSYI 86


>gi|121603741|ref|YP_981070.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120592710|gb|ABM36149.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 710

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 10  ILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           I C    C++VC        +    + ++P+ C+ CG C   CP  AI        E   
Sbjct: 314 IGCS--ACIDVCSASAISSDKSRQQIKVNPNLCVGCGACTTVCPSGAISYAYPRPAEQGA 371

Query: 68  KINSEYATQ 76
           KI +  +T 
Sbjct: 372 KIKTLLSTY 380



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C LC    CV  CP            L      C+ CG+C   CP +A+
Sbjct: 575 IDKDACTLCL--SCVNACPASALQDNPDSLQLKFIEKNCVQCGLCVKTCPENAL 626


>gi|317487064|ref|ZP_07945872.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316921746|gb|EFV43024.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 767

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 10/63 (15%)

Query: 7   ENCILCKHTD----CVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C+ C        C+E CP           G       PD CI CG+C   CP   I  
Sbjct: 701 DRCVSCGTCRDCRMCLESCPEGAISRETLAGGAYRYVSDPDRCIGCGICSGVCPCG-IWT 759

Query: 58  DTE 60
              
Sbjct: 760 MHP 762


>gi|307266841|ref|ZP_07548363.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918129|gb|EFN48381.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 577

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C+ + CP     + +   +I PD+C  C VC   CP DAI
Sbjct: 525 IDQDKCKKC--GLCLRIGCP--AISKKDGIFSIDPDQCTGCTVCMQVCPFDAI 573


>gi|304397719|ref|ZP_07379596.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           aB]
 gi|304354891|gb|EFM19261.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           aB]
          Length = 192

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIEM 164


>gi|300691730|ref|YP_003752725.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299078790|emb|CBJ51450.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein [Ralstonia
           solanacearum PSI07]
          Length = 487

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+VCP                ECI CG C   C     K     GL  +
Sbjct: 275 ACVDCS--ICVQVCPTGIDIRQGLQY-----ECIGCGACIDACDQVMDKMHYPRGLIRY 326


>gi|229490857|ref|ZP_04384692.1| NADH-quinone oxidoreductase subunit i [Rhodococcus erythropolis
           SK121]
 gi|229322247|gb|EEN88033.1| NADH-quinone oxidoreductase subunit i [Rhodococcus erythropolis
           SK121]
          Length = 185

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCVEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|94265660|ref|ZP_01289401.1| Nitroreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta
          proteobacterium MLMS-1]
 gi|93453831|gb|EAT04197.1| Nitroreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta
          proteobacterium MLMS-1]
          Length = 273

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V  E CI C   +C + CP       +     +   CI C  C   CP  A+    +   
Sbjct: 6  VDQERCIQC--GECAQDCPTGVITLDDYPQISNEAGCIQCQHCLAICPTAALSILDKDPD 63


>gi|320353960|ref|YP_004195299.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122462|gb|ADW18008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 167

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C  C+   CV+ CP       +    + +    C+ C  C   CP    + + E
Sbjct: 57  SCFHCEKPWCVDACPTGAMRRRDKDGIVYVEEKACVGCKACITACPWTVPQWNPE 111


>gi|298506822|gb|ADI85545.1| electron transfer flavoprotein, alpha subunit [Geobacter
          sulfurreducens KN400]
          Length = 447

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          +   CI C    C   CPV+C    +     I  ++CI C  C   CP +A++ 
Sbjct: 17 IEGKCIAC-GARCQSACPVNCIDMNDAGEPIILSEKCIGCVKCVKVCPAEALEM 69



 Score = 33.4 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDC 25
          +++E CI C    CV+VCP + 
Sbjct: 47 ILSEKCIGCVK--CVKVCPAEA 66


>gi|298674804|ref|YP_003726554.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanohalobium evestigatum Z-7303]
 gi|298287792|gb|ADI73758.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanohalobium evestigatum Z-7303]
          Length = 605

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 2   TYVV-TENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y +  E C  CK   CV   CP   F        I+   C  CGVC   C  DAI
Sbjct: 548 PYTIDEEKCTGCK--QCVYFGCPAIEFDASLKKARINSM-CTGCGVCAQLCKFDAI 600


>gi|294788408|ref|ZP_06753651.1| cytochrome c oxidase accessory protein CcoG [Simonsiella muelleri
           ATCC 29453]
 gi|294483839|gb|EFG31523.1| cytochrome c oxidase accessory protein CcoG [Simonsiella muelleri
           ATCC 29453]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCP                +CI C  C   C     K +   GL  +  
Sbjct: 265 CINC--TMCVQVCPTGIDIRDGLQY-----QCIGCAACIDACNEVMDKMNYPRGLIRYTT 317

Query: 69  ---INSEYAT 75
              +N EY  
Sbjct: 318 EAVLNKEYTD 327


>gi|251778561|ref|ZP_04821481.1| sulfite reductase, subunit C [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082876|gb|EES48766.1| sulfite reductase, subunit C [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 320

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 5   VTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + C+ C    CV  C    VD        +  + ++CI CG C   CP  A       
Sbjct: 168 DKDRCVSC--GACVRACKKKSVDSLKAVNYKVVRNEEKCIGCGECVINCPTGA----WTR 221

Query: 62  GLELWLKI 69
             E + K+
Sbjct: 222 SKEKYYKL 229


>gi|212703399|ref|ZP_03311527.1| hypothetical protein DESPIG_01442 [Desulfovibrio piger ATCC 29098]
 gi|212673144|gb|EEB33627.1| hypothetical protein DESPIG_01442 [Desulfovibrio piger ATCC 29098]
          Length = 373

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C   C   CF +  +  +     +C+ C  C   CP      + +   +  +
Sbjct: 108 CFHCNDPACASACFAKCFQKQPDGSVTYDGTQCVGCRYCMIACPFYVPGFEYDEAWDPLV 167

Query: 68  K 68
           +
Sbjct: 168 Q 168


>gi|210623816|ref|ZP_03294065.1| hypothetical protein CLOHIR_02016 [Clostridium hiranonis DSM 13275]
 gi|210153311|gb|EEA84317.1| hypothetical protein CLOHIR_02016 [Clostridium hiranonis DSM 13275]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C    C  VCPV    +      +   +CI C  C   CP +A
Sbjct: 194 ACNGC--GVCATVCPVGAISKENPK-KVDKSKCISCMRCIKACPSNA 237


>gi|160901866|ref|YP_001567447.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Petrotoga mobilis SJ95]
 gi|160359510|gb|ABX31124.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Petrotoga
           mobilis SJ95]
          Length = 162

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
            V   C+ C+   C EVCP     +      +  + ++CI C  C   CP  +IK D
Sbjct: 47  FVPSVCLQCERAYCEEVCPTSALTKNPETGVVELNKEKCIGCKQCIVACPWGSIKLD 103



 Score = 33.8 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 3/55 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDT 59
            E CI CK   C+  CP            +     C     C   C   A+  + 
Sbjct: 82  KEKCIGCK--QCIVACPWGSIKLDHTGKEVIKCDNCGGDPACIKVCYPGALSYEE 134


>gi|147920959|ref|YP_685232.1| 4(4Fe-4S) polyferredoxin [uncultured methanogenic archaeon RC-I]
 gi|110620628|emb|CAJ35906.1| 4(4Fe-4S) polyferredoxin [uncultured methanogenic archaeon RC-I]
          Length = 158

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECP 51
          C  C+   CV  CP     +     F+ I    C+ C  C   CP
Sbjct: 52 CHHCRDPMCVAACPTGACKKNGQTGFVTIDQMLCVGCKSCMYACP 96


>gi|119775967|ref|YP_928707.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella amazonensis
           SB2B]
 gi|119768467|gb|ABM01038.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella amazonensis
           SB2B]
          Length = 512

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C+ C    CVEVCP                ECI+CG C   C         +P L  +
Sbjct: 307 CVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNQTMANFGYKPDLIAF 357


>gi|266619188|ref|ZP_06112123.1| iron-sulfur cluster-binding protein [Clostridium hathewayi DSM
          13479]
 gi|288869279|gb|EFD01578.1| iron-sulfur cluster-binding protein [Clostridium hathewayi DSM
          13479]
          Length = 236

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          ++ T+ C  C    C E C        +    +   D C   G C P CP  AI
Sbjct: 7  HIDTDACTGC--GLCAEACHEGAIQMTDGKAVLTREDYCDGLGDCLPACPAGAI 58


>gi|225390043|ref|ZP_03759767.1| hypothetical protein CLOSTASPAR_03793 [Clostridium asparagiforme
           DSM 15981]
 gi|225043920|gb|EEG54166.1| hypothetical protein CLOSTASPAR_03793 [Clostridium asparagiforme
           DSM 15981]
          Length = 212

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           Y +TE+C  C    C+  CP +C         I  + C+ CG C   CP  A
Sbjct: 157 YHITEDCDGC--GLCLSQCPQNCIDSSRTPFKIQAEHCLHCGNCVEICPQKA 206


>gi|222053855|ref|YP_002536217.1| protein of unknown function DUF362 [Geobacter sp. FRC-32]
 gi|221563144|gb|ACM19116.1| protein of unknown function DUF362 [Geobacter sp. FRC-32]
          Length = 375

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V E C LC    C + CP       E  L+     CI C  C   CP  A+
Sbjct: 312 VEERCRLC--GVCKDACPPHAIDIKEGRLSFDYHACIRCFCCRELCPEGAL 360


>gi|167910108|ref|ZP_02497199.1| ferredoxin [Burkholderia pseudomallei 112]
          Length = 170

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|167844880|ref|ZP_02470388.1| ferredoxin [Burkholderia pseudomallei B7210]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|218780736|ref|YP_002432054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762120|gb|ACL04586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+E C  C    C ++CP +      + + +  D CI C  C   CP +A         E
Sbjct: 191 VSEACTQC--GICEDLCPTNAIDYEND-VMVDVDSCIRCCACIKGCPENARSMKASKVKE 247

Query: 65  --LWLKINSE 72
              WL  N +
Sbjct: 248 IAKWLADNCK 257


>gi|167039777|ref|YP_001662762.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514]
 gi|300914979|ref|ZP_07132294.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561]
 gi|307724899|ref|YP_003904650.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513]
 gi|166854017|gb|ABY92426.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514]
 gi|300888703|gb|EFK83850.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561]
 gi|307581960|gb|ADN55359.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C    C  +C  D     E    ++P  C  CG+C  +CPV+AIK   E
Sbjct: 61  AVIDKDKCIEC--GLCERLCRFDAISNFE----VNPYYCEGCGLCMYKCPVEAIKLVEE 113


>gi|116749229|ref|YP_845916.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698293|gb|ABK17481.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 576

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C  C    CV++CP       E          +      C  CGVC   CP   I 
Sbjct: 495 VTDRCDGC--ALCVDLCPYLALKIEEVEEEGRKRKRIKTDNILCKGCGVCAATCPKGGIL 552

Query: 57  PDTEPGLELWLKINSEYATQWPNI 80
                  +L  ++++  A+    I
Sbjct: 553 VHGFTLQQLKAQVDAALASVRAEI 576


>gi|312135305|ref|YP_004002643.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Caldicellulosiruptor owensensis OL]
 gi|311775356|gb|ADQ04843.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor owensensis OL]
          Length = 577

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+ ++ C  CK   C+ + CP     E    + I+ + C+ CG+CE  C   AI
Sbjct: 524 YIDSQKCKNCKM--CLNLGCPAISIKER---VFINENLCLGCGMCETICKFGAI 572


>gi|296133903|ref|YP_003641150.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermincola sp. JR]
 gi|296032481|gb|ADG83249.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermincola potens JR]
          Length = 597

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 5   VTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+ C+ CK   C+    CP       +    I    C  CGVC   CP DAI
Sbjct: 545 VTDKCVGCK--VCMNKLGCPALVPAGEK---VIIGATCTGCGVCRQVCPADAI 592


>gi|302879566|ref|YP_003848130.1| electron transport complex, RnfABCDGE type, B subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582355|gb|ADL56366.1| electron transport complex, RnfABCDGE type, B subunit [Gallionella
           capsiferriformans ES-2]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +    CI C  T C++ CPVD      +    I   EC  C +C   CPVD I  +  P 
Sbjct: 107 IDESTCIGC--TLCIQACPVDAIVGAAKQMHTIIAAECTGCELCLAPCPVDCISMEPIPD 164


>gi|254512090|ref|ZP_05124157.1| cytochrome c oxidase accessory protein CcoG [Rhodobacteraceae
           bacterium KLH11]
 gi|221535801|gb|EEE38789.1| cytochrome c oxidase accessory protein CcoG [Rhodobacteraceae
           bacterium KLH11]
          Length = 454

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCPV         L     ECI C +C   C     K     GL  ++ 
Sbjct: 239 CIDC--MACVNVCPVGIDIRDGQQL-----ECITCALCIDACDDMMAKIGKPRGLIDYMA 291

Query: 69  INSE 72
           ++ E
Sbjct: 292 LSDE 295


>gi|207727832|ref|YP_002256226.1| ferredoxin protein [Ralstonia solanacearum MolK2]
 gi|206591073|emb|CAQ56685.1| ferredoxin protein [Ralstonia solanacearum MolK2]
          Length = 82

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPKD-PAHAETHEQLMQKY 76


>gi|254447723|ref|ZP_05061188.1| cytochrome c oxidase accessory protein CcoG [gamma proteobacterium
           HTCC5015]
 gi|198262503|gb|EDY86783.1| cytochrome c oxidase accessory protein CcoG [gamma proteobacterium
           HTCC5015]
          Length = 473

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL- 67
           C+ C    CV+VCP                ECI C  C   C     + D   GL  +  
Sbjct: 268 CVDCNM--CVQVCPTGIDIRDGLQY-----ECITCAACIDICDDVMERHDKPKGLIRYTT 320

Query: 68  --KINSEYATQWPNIT 81
              +N + +  W   T
Sbjct: 321 ENALNHKPSKIWRPRT 336


>gi|167737726|ref|ZP_02410500.1| ferredoxin [Burkholderia pseudomallei 14]
          Length = 173

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      +    I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|68164858|ref|YP_247654.1| NADH dehydrogenase subunit I [Cucumis sativus]
 gi|67511453|emb|CAJ00813.1| NADH dehydrogenase subunit I [Cucumis sativus]
          Length = 160

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--ACVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|167036651|ref|YP_001664229.1| hydrogenase with PAS/PAC sensor [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|166855485|gb|ABY93893.1| hydrogenase with PAS/PAC sensor [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
          Length = 577

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  CPV           +    CI CG C  ECP +A
Sbjct: 12 NCKNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCVIECPQNA 56


>gi|325283907|ref|YP_004256448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
 gi|324315716|gb|ADY26831.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 11 LCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           C    C   CP +    G     + I PD C  CG+C   CP  A++ D
Sbjct: 32 GCDL--CARACPHEAVILGPLGASVQIDPDRCTGCGLCVQACPSGALEYD 79



 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           V E C+ C    C  VCP +         G   L +    C  C  C   CP  A+ 
Sbjct: 259 VDEKCMDC--PVCSNVCPTEAITRTHDAAGTLHLTLDLSACTGCMACVDSCPPQAMH 313


>gi|325264740|ref|ZP_08131469.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium sp. D5]
 gi|324030032|gb|EGB91318.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium sp. D5]
          Length = 602

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V  ++C  CK       CP     +G   + + P  C  CG+C   CP  AI      
Sbjct: 544 YKVKQDSCTKCKVCISQLGCPAIAVNDGA--VVVEPSLCYGCGLCSQVCPSGAIGEVESD 601

Query: 62  G 62
            
Sbjct: 602 E 602


>gi|323498080|ref|ZP_08103085.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM
           21326]
 gi|323316860|gb|EGA69866.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM
           21326]
          Length = 193

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 160


>gi|310779383|ref|YP_003967716.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926]
 gi|309748706|gb|ADO83368.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926]
          Length = 285

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C LC    C + C  +     ++ + I  + C +CG CE  CP +AI+ +     
Sbjct: 61  VDMEKCNLC--GKCGDFCRYNAILPAKDKVLIFKEICHNCGGCEIVCPTNAIQYEKREIG 118

Query: 64  ELW 66
           +++
Sbjct: 119 KIY 121


>gi|308186747|ref|YP_003930878.1| Electron transport complex protein rnfB [Pantoea vagans C9-1]
 gi|308057257|gb|ADO09429.1| Electron transport complex protein rnfB [Pantoea vagans C9-1]
          Length = 192

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIEM 164


>gi|302543436|ref|ZP_07295778.1| NADH-quinone oxidoreductase, I subunit [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461054|gb|EFL24147.1| NADH-quinone oxidoreductase, I subunit [Streptomyces himastatinicus
           ATCC 53653]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 66  EKCIGCEL--CAWACPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGLCVEAC 123

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 124 PTRALTM 130


>gi|294788068|ref|ZP_06753312.1| NADH dehydrogenase (ubiquinone), I subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484361|gb|EFG32044.1| NADH dehydrogenase (ubiquinone), I subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 114


>gi|294102533|ref|YP_003554391.1| protein of unknown function DUF362 [Aminobacterium colombiense DSM
           12261]
 gi|293617513|gb|ADE57667.1| protein of unknown function DUF362 [Aminobacterium colombiense DSM
           12261]
          Length = 377

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C+   C E+C            L  + ++CI C  C+  CP +AI+ 
Sbjct: 313 PDLCIRCRK--CEEICAAHAVILDSNGKLHFNYNKCIRCFCCQEVCPNNAIEF 363


>gi|260893063|ref|YP_003239160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260865204|gb|ACX52310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 263

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C++  C   C    FY+      + H   C+ C  C   CP    K         
Sbjct: 76  SCFHCQYPACESACFAHAFYKTPEGPVLYHAYRCVGCRYCMLACPFGIPKYQWNEVFPE 134


>gi|237722132|ref|ZP_04552613.1| 4Fe-4S ferredoxin [Bacteroides sp. 2_2_4]
 gi|229447942|gb|EEO53733.1| 4Fe-4S ferredoxin [Bacteroides sp. 2_2_4]
          Length = 253

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI C+   C + CPV               +C  C  C   CP  A++ 
Sbjct: 188 FYTTDACIGCR--RCEKSCPVGNIMMMGRKPV-WGMDCTSCLACYHVCPQHAVQY 239


>gi|255656212|ref|ZP_05401621.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-23m63]
 gi|296450352|ref|ZP_06892110.1| sulfite reductase [Clostridium difficile NAP08]
 gi|296878764|ref|ZP_06902766.1| sulfite reductase [Clostridium difficile NAP07]
 gi|296260802|gb|EFH07639.1| sulfite reductase [Clostridium difficile NAP08]
 gi|296430232|gb|EFH16077.1| sulfite reductase [Clostridium difficile NAP07]
          Length = 323

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    CV+ C    V       N +    D+CI CG C   CP +A   D +  
Sbjct: 171 KDRCVNC--GACVKKCSKISVGALKTENNKVVRDGDKCIGCGECVLNCPTNAWTRDEKKY 228

Query: 63  LE 64
             
Sbjct: 229 YR 230


>gi|255505858|ref|ZP_05348533.3| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255265431|gb|EET58636.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 4   VVTENCILCKHTDCVEVCPV-----DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + CI C    CVE CPV     +     +        +CI C  C+  CP  AI
Sbjct: 362 IDKKLCIRC--GVCVEHCPVPGKAVNFKNGRKEPPVYDYKKCIRCYCCQEMCPRHAI 416


>gi|138895374|ref|YP_001125827.1| subunit gamma of pyruvate oxidoreductase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196249178|ref|ZP_03147877.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Geobacillus
           sp. G11MC16]
 gi|134266887|gb|ABO67082.1| Gamma subunit of pyruvate oxidoreductase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211407|gb|EDY06167.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Geobacillus
           sp. G11MC16]
          Length = 336

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 12/64 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C  VCP  CF           +      I    C  C  C   CP  A+ 
Sbjct: 250 DKCIHCV--ACDNVCPDLCFVWEERVDKKGRKQMFLAGIDYQYCKGCLKCVEACPTAALV 307

Query: 57  PDTE 60
            + E
Sbjct: 308 AERE 311


>gi|124027636|ref|YP_001012956.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456]
 gi|123978330|gb|ABM80611.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456]
          Length = 494

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    C + CP       E      L    D CI CG C   CP DAI
Sbjct: 344 VDQERCTLC--GACAKECPTGALKLREEAEGSALLFLHDRCIACGWCREVCPEDAI 397


>gi|124024377|ref|YP_001018684.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9303]
 gi|156632624|sp|A2CD59|NDHI_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|123964663|gb|ABM79419.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9303]
          Length = 218

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAY 130


>gi|119509218|ref|ZP_01628368.1| transcriptional regulator [Nodularia spumigena CCY9414]
 gi|119466060|gb|EAW46947.1| transcriptional regulator [Nodularia spumigena CCY9414]
          Length = 538

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVD 53
          M Y +   NC+ C +  C   CP        +   I P+ C +C        C   CP +
Sbjct: 1  MPYTIPNNNCVGCDN--CRPQCPTGAIKIENDEYWIDPNLCNNCEGYYPEPQCVIVCPTN 58


>gi|21229145|ref|NP_635067.1| coenzyme F420 hydrogenase subunit gamma [Methanosarcina mazei Go1]
 gi|20907707|gb|AAM32739.1| Coenzyme F420 hydrogenase, gamma subunit [Methanosarcina mazei Go1]
          Length = 287

 Score = 43.1 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           MT V+ +  C+ C    C   CPV              D CI CG C   CP      + 
Sbjct: 214 MTEVINQGLCMGC--GTCAAACPVRAITHEFGKPQGERDLCIKCGSCYGACPRSFFNFEV 271

Query: 60  EPGLELWLKINSE 72
               E   +I +E
Sbjct: 272 IDEFEDISEIIAE 284


>gi|328883086|emb|CCA56325.1| putative hydrogenase [Streptomyces venezuelae ATCC 10712]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 9   CILCKHT--DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +        CI C  C   CP    K D +  L+
Sbjct: 53  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCANCVNACPFGVPKIDLQAKLQ 112


>gi|300855551|ref|YP_003780535.1| anaerobic sulfite reductase subunit C [Clostridium ljungdahlii DSM
           13528]
 gi|300435666|gb|ADK15433.1| anaerobic sulfite reductase subunit C [Clostridium ljungdahlii DSM
           13528]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 19/95 (20%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C+ CK   CV+ C     D        +     +CI CG C  +CP+ A          
Sbjct: 171 RCVGCK--ACVKNCKLRSADALKFENFKVLRDDKKCIGCGECVDKCPMGA---------- 218

Query: 65  LWLKINSEYATQW-PNITTKKESLPSAA--KMDGV 96
            W + N +Y        T KK         K    
Sbjct: 219 -WTRSNKKYFKLTILGRTGKKNPRLGQDFIKWVDE 252


>gi|257063297|ref|YP_003142969.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790950|gb|ACV21620.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKP 57
           Y +   C  C++  C+ VCP    Y  E      I+ +ECI C  C   CP      
Sbjct: 52  YWLPMQCQQCENPGCIAVCPTGASYRDEETGVVLINEEECIGCQSCMTGCPYGVRWY 108


>gi|212224628|ref|YP_002307864.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermococcus onnurineus NA1]
 gi|212009585|gb|ACJ16967.1| 2-oxoisovalerate:ferredoxin oxidoreductase, delta subunit
           [Thermococcus onnurineus NA1]
          Length = 102

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V    C+ C    C + CP    Y  E+    I  D C  CG+C  ECP  AI  + E
Sbjct: 43  PVVDDNKCVKCY--ICWKFCPEPAIYIREDGYVGIDYDYCKGCGICANECPTKAITMEKE 100

Query: 61  PG 62
             
Sbjct: 101 EK 102


>gi|159039967|ref|YP_001539220.1| NADH dehydrogenase subunit I [Salinispora arenicola CNS-205]
 gi|157918802|gb|ABW00230.1| NADH-quinone oxidoreductase, chain I [Salinispora arenicola
           CNS-205]
          Length = 211

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 18/72 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                   +   I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGGDNTEEQRFSPGERYASVYQINYARCIFCGLCIEAC 109

Query: 51  PVDAIKPDTEPG 62
           P  ++    E  
Sbjct: 110 PTRSLTMSNEYE 121


>gi|114330024|ref|YP_740705.1| NADH-plastoquinone oxidoreductase subunit I [Nandina domestica]
 gi|122165913|sp|Q09FQ6|NDHI_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|114054526|gb|ABI49919.1| NADH-plastoquinone oxidoreductase subunit I [Nandina domestica]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|78183863|ref|YP_376297.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9902]
 gi|110287712|sp|Q3B074|NDHI_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|78168157|gb|ABB25254.1| NADH-plastoquinone oxidoreductase, subunit I [Synechococcus sp.
           CC9902]
          Length = 210

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|50346839|ref|YP_053210.1| NADH dehydrogenase subunit I [Nymphaea alba]
 gi|75290268|sp|Q6EVZ6|NDHI_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|50250384|emb|CAF28650.1| NADH dehydrogenase 18kD subunit [Nymphaea alba]
          Length = 179

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|332560639|ref|ZP_08414957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides WS8N]
 gi|332274437|gb|EGJ19753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides WS8N]
          Length = 469

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 16/96 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCP+                CI CG+C   C     +     GL  +L 
Sbjct: 251 CIDC--MACVNVCPMGIDIREGQ-----QMACITCGLCIDACDDTMDRIGRPRGLIGYLA 303

Query: 69  INSEY--------ATQWPNITTKKESLPSAAKMDGV 96
           ++ E+        A  W  +   + SL  AA   GV
Sbjct: 304 LSDEHLERAGDAPAPAWKRLFRLRTSL-YAALWAGV 338


>gi|332526264|ref|ZP_08402393.1| cytochrome c oxidase accessory protein CcoG [Rubrivivax
           benzoatilyticus JA2]
 gi|332110098|gb|EGJ10726.1| cytochrome c oxidase accessory protein CcoG [Rubrivivax
           benzoatilyticus JA2]
          Length = 496

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C  C   C     K     GL  +  
Sbjct: 283 CIDC--GLCVQVCPTGIDIRDGLQY-----ECIGCTACIDVCNGVMDKMKYPRGLIRYAT 335

Query: 69  IN 70
            N
Sbjct: 336 QN 337


>gi|332158425|ref|YP_004423704.1| hypothetical protein PNA2_0784 [Pyrococcus sp. NA2]
 gi|331033888|gb|AEC51700.1| hypothetical protein PNA2_0784 [Pyrococcus sp. NA2]
          Length = 649

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C+ C    CV  CP +     +    + + P++C  C  C   CP+  IK   +  + + 
Sbjct: 577 CVGC--GVCVTTCPEEAISIDDKRKKIVVFPEKCTHCRECMSVCPLVVIKGVDKIIIIIH 634

Query: 67  LKIN 70
           L  N
Sbjct: 635 LSKN 638


>gi|317492085|ref|ZP_07950516.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919968|gb|EFV41296.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
             +  ENCI C  T C++ CPVD           +  D C  C +C   CP D I
Sbjct: 110 ALIDEENCIGC--TKCIQACPVDAIVGATRAMHTVVSDLCTGCNLCVAPCPTDCI 162


>gi|295669682|ref|XP_002795389.1| translation initiation factor RLI1 [Paracoccidioides brasiliensis
          Pb01]
 gi|226285323|gb|EEH40889.1| translation initiation factor RLI1 [Paracoccidioides brasiliensis
          Pb01]
          Length = 623

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV                  I    CI CG+C  +CP  A
Sbjct: 11 VNSDKCKPKKCR-QECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGA 69

Query: 55 IK 56
          I 
Sbjct: 70 IH 71


>gi|229917628|ref|YP_002886274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Exiguobacterium sp. AT1b]
 gi|229469057|gb|ACQ70829.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Exiguobacterium sp. AT1b]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           C+ CK+  C +VCP +        + +    ++CI C  C   CP    K D E
Sbjct: 52  CMQCKNPACAQVCPANAIQITPEGVVLSASEEKCIGCRNCTFACPFGIPKFDFE 105


>gi|167748945|ref|ZP_02421072.1| hypothetical protein ANACAC_03726 [Anaerostipes caccae DSM 14662]
 gi|167651567|gb|EDR95696.1| hypothetical protein ANACAC_03726 [Anaerostipes caccae DSM 14662]
          Length = 307

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C  C    C+E CP    Y  ++ +  H + CI C  C   C   A+  
Sbjct: 56  KCTGC--GHCLEHCPKQALYADDHHIKYHENCCIHCNKCVFGCLQSALSW 103


>gi|122894039|ref|YP_001004235.1| NADH-plastoquinone oxidoreductase subunit I [Ranunculus macranthus]
 gi|156632627|sp|A1XGT7|NDHI_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|85540853|gb|ABC70805.1| NADH-plastoquinone oxidoreductase subunit I [Ranunculus macranthus]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSAYDRHELN 136


>gi|152989151|ref|YP_001347023.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PA7]
 gi|166991043|sp|A6V1T8|RNFB_PSEA7 RecName: Full=Electron transport complex protein rnfB
 gi|150964309|gb|ABR86334.1| probable ferredoxin [Pseudomonas aeruginosa PA7]
          Length = 188

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI-KPDT 59
            Y+    CI C  T C++ CPVD           +  DEC  C +C   CPVD I   + 
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMREI 163

Query: 60  EPGLELW 66
            P +  W
Sbjct: 164 APDVRHW 170


>gi|320536159|ref|ZP_08036209.1| 4Fe-4S binding domain protein [Treponema phagedenis F0421]
 gi|320146995|gb|EFW38561.1| 4Fe-4S binding domain protein [Treponema phagedenis F0421]
          Length = 273

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 5   VTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +T+   C  C    C++VCP+      +         CI C  C   C   A   D    
Sbjct: 197 ITDMTKCDRC--GVCIKVCPMGSIAADDPANVF--GICIKCQACLVYCHTGAKSFDDPAF 252

Query: 63  LELWLKINSEY 73
           L   + +   Y
Sbjct: 253 LSHKVMLEKNY 263


>gi|303258379|ref|ZP_07344382.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302858825|gb|EFL81913.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPV 52
           ++ C  C+ + C E CP       E   +    D C+ CG+C   CP 
Sbjct: 145 SDQCKHCRTSPCHEACPTGAIVRNEFGGVYYQTDICMGCGMCVAACPF 192


>gi|288917191|ref|ZP_06411560.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EUN1f]
 gi|288351382|gb|EFC85590.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EUN1f]
          Length = 223

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 18/75 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 51  EKCVGCEL--CAWACPADAIYVEGADNTDEERYSPGERYGRVYQINYLRCILCGLCIEAC 108

Query: 51  PVDAIKPDTEPGLEL 65
           P  A+    E  L  
Sbjct: 109 PTRALTMSNEYELAD 123


>gi|307728378|ref|YP_003905602.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1003]
 gi|323524668|ref|YP_004226821.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1001]
 gi|307582913|gb|ADN56311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1003]
 gi|323381670|gb|ADX53761.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1001]
          Length = 85

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTE 60
          I  D E
Sbjct: 59 IPRDPE 64


>gi|255526495|ref|ZP_05393405.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296185864|ref|ZP_06854270.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255509814|gb|EET86144.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296049532|gb|EFG88960.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 278

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA----IKPDTEPGL 63
           +CI C   +CV+ CP       E  +  +P++C DCG+C   C           DTE  L
Sbjct: 44  SCIQC--GECVDNCPYGAISLVEKSVIWNPEKCEDCGLCVKICKNKCGPKFRSMDTEDIL 101

Query: 64  EL 65
           E 
Sbjct: 102 EQ 103


>gi|255655141|ref|ZP_05400550.1| electron transport complex protein [Clostridium difficile
           QCD-23m63]
 gi|296451129|ref|ZP_06892870.1| electron transport complex protein RnfB [Clostridium difficile
           NAP08]
 gi|296880519|ref|ZP_06904481.1| electron transport complex protein RnfB [Clostridium difficile
           NAP07]
 gi|296259950|gb|EFH06804.1| electron transport complex protein RnfB [Clostridium difficile
           NAP08]
 gi|296428473|gb|EFH14358.1| electron transport complex protein RnfB [Clostridium difficile
           NAP07]
          Length = 323

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  CI C    CV+ C  D     +    I P++C+ C  C  +CP   I  D
Sbjct: 211 TAGCIGC--GMCVKACKFDAIIFEDKIAKIDPNKCVGCMQCVAKCPTKVISGD 261



 Score = 38.4 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +    C+ C    CV  CP          +  + I  + C+ C VC+ +C  DAI+ + +
Sbjct: 238 IDPNKCVGC--MQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELK 295

Query: 61  PGLE 64
              +
Sbjct: 296 EKHK 299



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 18/75 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
             +  E C+ C    C EVCP              V+C  +             CI CG+
Sbjct: 162 AVIDEEKCVNC--GKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGM 219

Query: 46  CEPECPVDAIKPDTE 60
           C   C  DAI  + +
Sbjct: 220 CVKACKFDAIIFEDK 234



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C     C + C  D     +    I  ++C++CG C+  CP   I        E+ ++ 
Sbjct: 139 GCLGLGTCKDACKFDAISIVDGVAVIDEEKCVNCGKCKEVCPKGIIIT-KPESQEVVVEC 197

Query: 70  NSE 72
           NS+
Sbjct: 198 NSK 200


>gi|167561482|ref|ZP_02354398.1| ferredoxin [Burkholderia oklahomensis EO147]
 gi|167568712|ref|ZP_02361586.1| ferredoxin [Burkholderia oklahomensis C6786]
          Length = 87

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ ++Y
Sbjct: 59 IPQD-PSRPETKDQLMAKY 76


>gi|157376826|ref|YP_001475426.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319200|gb|ABV38298.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 481

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     K   +P L  +  
Sbjct: 274 CIDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDACNETMGKFGYQPNLIGYFS 326

Query: 69  INSEYATQWPNITTKK 84
            N+      P   + K
Sbjct: 327 ENALKDKAKPVYRSTK 342


>gi|114107100|ref|YP_740256.1| NADH-plastoquinone oxidoreductase subunit I [Liriodendron
           tulipifera]
 gi|122233809|sp|Q0G9G5|NDHI_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|113201048|gb|ABI32563.1| NADH-plastoquinone oxidoreductase subunit I [Liriodendron
           tulipifera]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|91786836|ref|YP_547788.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91696061|gb|ABE42890.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 695

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 10  ILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C    C+++C        +    + ++P+ CI CG C   CP  A+        E 
Sbjct: 307 VGCN--ACIDICSAGAVSSQKERQQIVVNPNLCIGCGACTTVCPTGALTYAYPRASEQ 362



 Score = 40.4 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV  CP     +      L      C+ CG+C   CP DAI
Sbjct: 560 VNTDTCTLCL--SCVSACPASALQDNPERPQLKFIEKNCVQCGLCAVTCPEDAI 611



 Score = 38.4 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPG 62
           +  + C  C    CV VCP       +    +   +C     C   C V  AI  + E  
Sbjct: 177 IDLDLCTRCN--ACVAVCPEGAI---DLSYQVDSSKCTSHRDCVAVCKVAGAIDFNREAQ 231


>gi|90418463|ref|ZP_01226375.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1]
 gi|90338135|gb|EAS51786.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1]
          Length = 680

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           V  E C LC    CV  CP D   +      +   E  C+ CG+C   CP  AI  D
Sbjct: 517 VDKERCTLC--MACVSACPADALRDTPGKPELRFVEAACVQCGICAATCPETAITLD 571



 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             C  T C++ CP        + + I    C  CG C   CP  A+  D     +
Sbjct: 283 TGC--TKCIDNCPPSAISPDGDNILIDTAICGGCGNCAAHCPTGAVSYDYPARAQ 335


>gi|57640225|ref|YP_182703.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
           KOD1]
 gi|57158549|dbj|BAD84479.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
           KOD1]
          Length = 306

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            CI C    CV VCP+      EN +  I  ++C  CGVC   CP  A+
Sbjct: 57  KCIHC--HTCVNVCPLRAITFDENEVQHIDREKCDVCGVCAEFCPTSAL 103


>gi|86152969|ref|ZP_01071174.1| nadh dehydrogenase i chain i [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843854|gb|EAQ61064.1| nadh dehydrogenase i chain i [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICISNCIRMETSLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 56  KPDTEPG 62
              TE  
Sbjct: 138 VHGTEYE 144


>gi|331268845|ref|YP_004395337.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum
           BKT015925]
 gi|329125395|gb|AEB75340.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum
           BKT015925]
          Length = 277

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++  + CI C    C +VC  +   + +  + +    C  CG CE  C  +A+     P
Sbjct: 58  PFIDDDKCINC--GKCGKVCQFNALVKTKRDMILFERLCHSCGACEIVCENNALTYRKRP 115


>gi|304315500|ref|YP_003850647.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588959|gb|ADL59334.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 231

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C+       CP D    G   + I   +C  CG+C+  CP  A+
Sbjct: 146 ELCRRCEQCLAAAACPGDAIVPG---VEIRLLKCRGCGLCQSACPYGAV 191


>gi|298481236|ref|ZP_06999430.1| ferredoxin-type protein [Bacteroides sp. D22]
 gi|298272810|gb|EFI14377.1| ferredoxin-type protein [Bacteroides sp. D22]
          Length = 515

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 1   MTYVV--TENCI----LCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPE 49
           M YVV   ENCI          C E CP        + +G     ++ + C+ CG CE  
Sbjct: 418 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 477

Query: 50  C---PVDAIKPDTEPGLEL 65
           C   P  AI  +  P  + 
Sbjct: 478 CPARPFRAIYIEGNPVQKE 496



 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + T  C  C    C   C   C    E   AI    C+DC  C   C   A+  +     
Sbjct: 221 IDTAKCNGC--GLCATKCKASCINSKE--HAIDYSRCVDCFDCLGACKQKALVYNPSLKK 276

Query: 64  EL 65
           + 
Sbjct: 277 QQ 278


>gi|294670450|ref|ZP_06735332.1| hypothetical protein NEIELOOT_02169 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307914|gb|EFE49157.1| hypothetical protein NEIELOOT_02169 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTIRYDIDLTKCIFCGFCEEACPTDAI 114


>gi|290489754|gb|ADD31284.1| NADH-plastoquinone oxidoreductase subunit I protein [Dillenia
           indica]
          Length = 169

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|290489750|gb|ADD31282.1| NADH-plastoquinone oxidoreductase subunit I protein [Antirrhinum
           majus]
          Length = 171

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETSIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|296109957|ref|YP_003616906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434771|gb|ADG13942.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 252

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C+ C    CVE CP+DC Y+    + I  D+C+ C +CE  CP  AIK  +    
Sbjct: 190 VDKELCVGC--MVCVEECPIDCIYDIGGVVEIDNDKCVLCRICEEVCPTKAIKMISYDQE 247

Query: 64  EL 65
             
Sbjct: 248 GE 249



 Score = 33.8 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C  C    C  VCP            +++ D CI CG CE +CP  A+K + E
Sbjct: 126 EKCGKC--GICAMVCPTKAIKVVRKKSFSVNLDLCIGCGACEEQCPKKAVKVERE 178


>gi|242006426|ref|XP_002424051.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus
          corporis]
 gi|212507357|gb|EEB11313.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus
          corporis]
          Length = 608

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    CK  +C + CPV             +    I  + CI CG+C  +CP +A
Sbjct: 19 VNSDKCKPKRCK-QECKKSCPVVRMGKLCIEVVPNDKIATISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|156598455|gb|ABU85487.1| NADH-plastoquinone oxidoreductase subunit I [Passiflora biflora]
          Length = 163

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYSRHELN 136


>gi|150006892|ref|YP_001301635.1| hypothetical protein BDI_0228 [Parabacteroides distasonis ATCC
           8503]
 gi|262384359|ref|ZP_06077494.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|149935316|gb|ABR42013.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|262294062|gb|EEY81995.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 258

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI C    C +VCP        +      D C+ C  C   CPV AI+ 
Sbjct: 190 FYATDTCISC--GICAKVCPTGTISLSGDGKPEWADTCVQCVACIHRCPVRAIEY 242


>gi|254974676|ref|ZP_05271148.1| electron transport complex protein [Clostridium difficile
           QCD-66c26]
 gi|255092064|ref|ZP_05321542.1| electron transport complex protein [Clostridium difficile CIP
           107932]
 gi|255100156|ref|ZP_05329133.1| electron transport complex protein [Clostridium difficile
           QCD-63q42]
 gi|255306046|ref|ZP_05350218.1| electron transport complex protein [Clostridium difficile ATCC
           43255]
 gi|255313801|ref|ZP_05355384.1| electron transport complex protein [Clostridium difficile
           QCD-76w55]
 gi|255516482|ref|ZP_05384158.1| electron transport complex protein [Clostridium difficile
           QCD-97b34]
 gi|255649582|ref|ZP_05396484.1| electron transport complex protein [Clostridium difficile
           QCD-37x79]
 gi|260682746|ref|YP_003214031.1| electron transport complex protein [Clostridium difficile CD196]
 gi|260686344|ref|YP_003217477.1| electron transport complex protein [Clostridium difficile R20291]
 gi|306519708|ref|ZP_07406055.1| electron transport complex protein [Clostridium difficile
           QCD-32g58]
 gi|260208909|emb|CBA61897.1| electron transport complex protein [Clostridium difficile CD196]
 gi|260212360|emb|CBE03172.1| electron transport complex protein [Clostridium difficile R20291]
          Length = 323

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  CI C    CV+ C  D     +    I P++C+ C  C  +CP   I  D
Sbjct: 211 TAGCIGC--GMCVKACKFDAIIFEDKIAKIDPNKCVGCMQCVAKCPTKVISGD 261



 Score = 38.4 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +    C+ C    CV  CP          +  + I  + C+ C VC+ +C  DAI+ + +
Sbjct: 238 IDPNKCVGC--MQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELK 295

Query: 61  PGLE 64
              +
Sbjct: 296 EKHK 299



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C     C + C  D     +    I  ++C++CG C+  CP   I        E+ ++ 
Sbjct: 139 GCLGLGTCKDACKFDAISIVDGIAVIDEEKCVNCGKCKEVCPKGIIIT-KPESQEVVVEC 197

Query: 70  NSE 72
           NS+
Sbjct: 198 NSK 200



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 18/75 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
             +  E C+ C    C EVCP              V+C  +             CI CG+
Sbjct: 162 AVIDEEKCVNC--GKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGM 219

Query: 46  CEPECPVDAIKPDTE 60
           C   C  DAI  + +
Sbjct: 220 CVKACKFDAIIFEDK 234


>gi|92118585|ref|YP_578314.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801479|gb|ABE63854.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 674

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C    C+++CP        + +AI+ + C  CG C   CP  A      P  
Sbjct: 282 VGC--HRCLDLCPTSAITPDGDHVAINAEICAGCGQCAAACPTGAASYALPPAD 333



 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V  E C LC    CV  CP    Y+      +   E  C+ CG+C+  CP   I
Sbjct: 516 VDVEGCTLCL--SCVSACPTGALYDDPERPVLRFTEDACVQCGLCQATCPEKVI 567


>gi|53802986|ref|YP_115287.1| electron transport complex protein RnfB [Methylococcus capsulatus
           str. Bath]
 gi|53756747|gb|AAU91038.1| electron transport complex, B subunit [Methylococcus capsulatus
           str. Bath]
          Length = 178

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +    CI C  T C++ CPVD      +    +   EC  C +C   CPVD I  +
Sbjct: 105 AVIDETKCIGC--TLCIQACPVDAILGAAKLMHTVIASECTGCELCIAPCPVDCIAME 160


>gi|41406193|ref|NP_959029.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81700783|sp|Q744Z4|NUOI1_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|41394541|gb|AAS02412.1| NuoI_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 175

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 18/75 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  +                       I+   CI CG C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIFVESADNTEAERFSPGERYGRVYQINYLRCIGCGFCIEAC 109

Query: 51  PVDAIKPDTEPGLEL 65
           P  A+    +  +  
Sbjct: 110 PTRALTMINDYEMAD 124


>gi|39997194|ref|NP_953145.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|39984084|gb|AAR35472.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|298506208|gb|ADI84931.1| carbon monoxide dehydrogenase-associated iron-sulfur
           cluster-binding oxidoreductase CooF [Geobacter
           sulfurreducens KN400]
          Length = 197

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           +C  C   +C++ CP      + EN   I  P  C  C +C   CP DAI
Sbjct: 57  SCRHCDPAECLDACPSGALGRDPENGAVILDPARCKACAMCAMVCPFDAI 106


>gi|11498296|ref|NP_069522.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649926|gb|AAB90550.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 368

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
             V T  CI C    C+  CP+            ++  ++C+ CGVC P CP++AI
Sbjct: 282 ATVDTSRCIAC--GICMLRCPMKAIKAKINREPASVDAEKCLGCGVCVPTCPMEAI 335


>gi|303248577|ref|ZP_07334833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490018|gb|EFL49940.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPV 52
            C+ C    C++ C        E +  + +    CI C  C   CP 
Sbjct: 61  ACLHCVAPACLDACAAGAISKSEEDGRVVVDAARCIGCKACARACPY 107



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV------CEPECPVDAIKP 57
           V    CI CK   C   CP      G + + +  D C+D  +      C   CP  A+  
Sbjct: 90  VDAARCIGCK--ACARACPYGVPQFGPDKVMVKCDLCLDQQLGGLEPPCVATCPDRALVW 147

Query: 58  DTEPGLELWLK 68
           +         +
Sbjct: 148 EETTPAGKKAE 158


>gi|289548732|ref|YP_003473720.1| formate dehydrogenase subunit beta [Thermocrinis albus DSM 14484]
 gi|289182349|gb|ADC89593.1| formate dehydrogenase, beta subunit [Thermocrinis albus DSM 14484]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    C++ CP      +  N +      +CI C  C   CP D  + D+      
Sbjct: 106 CMHCGDPGCLKACPSPGAIVQYANGVVDFDHSKCIGCKFCLSGCPFDVPRYDSNNKPWK 164


>gi|257452069|ref|ZP_05617368.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 3_1_5R]
 gi|257466132|ref|ZP_05630443.1| anaerobic sulfite reductase subunit C [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917290|ref|ZP_07913530.1| anaerobic sulfite reductase subunit C [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317058617|ref|ZP_07923102.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 3_1_5R]
 gi|313684293|gb|EFS21128.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 3_1_5R]
 gi|313691165|gb|EFS28000.1| anaerobic sulfite reductase subunit C [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V    E  N +  + ++CI CG C   CP+ A     +   
Sbjct: 172 DRCVNC--GACVKKCKRMSVGALREENNKIIRNEEKCIGCGECVLNCPMSAWTRSPKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
           +L L     K N   A  W
Sbjct: 230 KLMLLGRTGKKNPRLAEDW 248


>gi|256752192|ref|ZP_05493057.1| putative PAS/PAC sensor protein [Thermoanaerobacter ethanolicus
          CCSD1]
 gi|256748920|gb|EEU61959.1| putative PAS/PAC sensor protein [Thermoanaerobacter ethanolicus
          CCSD1]
          Length = 575

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  CPV           +    CI CG C  ECP +A
Sbjct: 10 NCKNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCVIECPQNA 54


>gi|237796373|ref|YP_002863925.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4
          str. 657]
 gi|229260995|gb|ACQ52028.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4
          str. 657]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  E C  C    CV  C        +     I  + C   G C PECP  AIK      
Sbjct: 8  IDKEKCNGC--GLCVTACHEGAIELIDGKAVLISDEYCDGLGDCLPECPTGAIKIVEREA 65

Query: 63 LELWLKINSEYATQWPNITTKKESLP 88
           E   ++  +       +   KE +P
Sbjct: 66 AEYNEELVEKRMAMKKPVEENKEKMP 91


>gi|239627359|ref|ZP_04670390.1| electron transport protein hydN [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517505|gb|EEQ57371.1| electron transport protein hydN [Clostridiales bacterium 1_7_47FAA]
          Length = 158

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V+   C  C+   C+EVCP            + I  + C  C +C   CP   I  D E
Sbjct: 47  FVMPMTCFHCEEAWCMEVCPAHAISRNARTGAVEIREERCAGCKMCMLACPYGNIHFDHE 106


>gi|218782860|ref|YP_002434178.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764244|gb|ACL06710.1| Indolepyruvate ferredoxin oxidoreductase, alpha/beta subunit
           [Desulfatibacillum alkenivorans AK-01]
          Length = 617

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C    H  CV+   CP    Y   N +AI+ ++CI C VC   CP  AI
Sbjct: 563 IDMEKCK--DHRLCVDALGCP--AMYVENNKVAINAEQCIGCAVCAQVCPEHAI 612


>gi|168181604|ref|ZP_02616268.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|182675121|gb|EDT87082.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  E C  C    CV  C        +     I  + C   G C PECP  AIK      
Sbjct: 8  IDKEKCNGC--GLCVTACHEGAIELIDGKAVLISDEYCDGLGDCLPECPTGAIKIVEREA 65

Query: 63 LELWLKINSEYATQWPNITTKKESLP 88
           E   ++  +       +   KE +P
Sbjct: 66 AEYNEELVEKRMAMKKPVEENKEKMP 91


>gi|154249015|ref|YP_001409840.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Fervidobacterium nodosum Rt17-B1]
 gi|154152951|gb|ABS60183.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Fervidobacterium nodosum Rt17-B1]
          Length = 550

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 3  YVVTENCILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          Y+++     CK+   C+  CPV       +   +  DECI CG C   CP +A     +
Sbjct: 6  YIISNR-ANCKYCYKCLRNCPVKAISFQNDVSFVIEDECILCGTCVNVCPQNAKNYRDD 63



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF 32
          ++V+ + CILC    CV VCP +     ++ 
Sbjct: 36 SFVIEDECILC--GTCVNVCPQNAKNYRDDI 64


>gi|329904696|ref|ZP_08273910.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in
           Cu oxidation [Oxalobacteraceae bacterium IMCC9480]
 gi|327547868|gb|EGF32625.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in
           Cu oxidation [Oxalobacteraceae bacterium IMCC9480]
          Length = 481

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI C  C   C     K D   GL  +
Sbjct: 259 CIDCSM--CVQVCPTGIDIRDGLQY-----ECIGCAACIDACNSVMAKIDLPAGLIRY 309


>gi|298377317|ref|ZP_06987270.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298265731|gb|EFI07391.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 256

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T+ CI C    C +VCP        +      D C+ C  C   CPV AI+ 
Sbjct: 188 FYATDTCISC--GICAKVCPTGTISLSGDGKPEWADTCVQCVACIHRCPVRAIEY 240


>gi|296113097|ref|YP_003627035.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis RH4]
 gi|295920791|gb|ADG61142.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis RH4]
 gi|326560473|gb|EGE10855.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 7169]
 gi|326565795|gb|EGE15957.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC1]
 gi|326570448|gb|EGE20488.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC8]
 gi|326571131|gb|EGE21155.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC7]
 gi|326577145|gb|EGE27039.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis O35E]
          Length = 275

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ E  CI C  T C+  CPVD      ++  +I  D C  C +C   CPVD I
Sbjct: 112 IIQEADCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163


>gi|291544447|emb|CBL17556.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           sp. 18P13]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + C        +   +I   +C  CGVC   CPV AI
Sbjct: 217 CIGCK--ICEKKCISGAITVTDFHASIDYAKCTGCGVCYEACPVGAI 261


>gi|320010259|gb|ADW05109.1| putative 4Fe-4S cluster-binding protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 9   CILCKHT--DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +        CI C  C   CP    K D +  L+
Sbjct: 53  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCANCVNACPFGVPKIDLQAKLQ 112


>gi|269863568|ref|XP_002651269.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220064840|gb|EED42787.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 6  TENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C      +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 23 PDKC----AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 72


>gi|254442137|ref|ZP_05055613.1| NADH-quinone oxidoreductase, chain I subfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198256445|gb|EDY80753.1| NADH-quinone oxidoreductase, chain I subfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 21/109 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCEPEC 50
           E C+ C    C  VCP                     +G     I    CI CG+C+  C
Sbjct: 67  EKCVSC--QLCEFVCPPKAIRITPGEIPEDSEYAHVEKGPKEFDIDMLRCIYCGMCQEVC 124

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA-KMDGVKQ 98
           P +AI    +  +  +    +E       +     +LP    K +  K+
Sbjct: 125 PEEAIWLQNQYSMSGYS--RAEMVNDKTKLYELGGTLPDEHFKWNKKKE 171


>gi|153955196|ref|YP_001395961.1| hypothetical protein CKL_2578 [Clostridium kluyveri DSM 555]
 gi|146348054|gb|EDK34590.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
          Length = 255

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V ++CI C    C + CP                +C  C  C   CP  AI+ 
Sbjct: 186 FSVEDSCIAC--GLCAKKCPDSAIRMQSGRPMWVKTKCTLCLGCLHRCPKFAIQY 238


>gi|20091781|ref|NP_617856.1| iron-sulfur cluster binding protein [Methanosarcina acetivorans
           C2A]
 gi|19916965|gb|AAM06336.1| iron-sulfur cluster binding protein [Methanosarcina acetivorans
           C2A]
          Length = 172

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C+  CP+    + +   + ++ + C  CG C   C V AI  D E
Sbjct: 55  CHACVDPPCMRACPLGALTKRKGGGVTLNKEICDGCGNCIEACIVGAIHLDAE 107


>gi|323700091|ref|ZP_08112003.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323460023|gb|EGB15888.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 323

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
             + C+ C    C   CP     E ++ +     ECI CG C   CP
Sbjct: 222 DKDACVHC--GKCSASCPSGIAVEKKDRVL--TPECIGCGQCIGACP 264


>gi|312883748|ref|ZP_07743468.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368598|gb|EFP96130.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 196

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|297568801|ref|YP_003690145.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio
            alkaliphilus AHT2]
 gi|296924716|gb|ADH85526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio
            alkaliphilus AHT2]
          Length = 1019

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            V  + CI C    C  +CP            +         C  CG+C   CPV AI  
Sbjct: 945  VDKDGCIGC--GLCESLCPYQAIRIYKDDNNKRKAETITASCKGCGICASHCPVFAISM 1001



 Score = 38.4 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLA-----IHPDECID-- 42
           Y+  + C  C    C + CP                 +            I P  C+   
Sbjct: 106 YIDADKCTAC--GMCTQYCPRHLVDGYNEGLAVTRPIHIDYPQAVPATYFIDPKACLHLQ 163

Query: 43  ---CGVCEPECPVDAIKPDTEPGL 63
              C +C P C   AI  D +P  
Sbjct: 164 HGTCKICVPVCQTKAIDFDQQPEE 187


>gi|296161524|ref|ZP_06844329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. Ch1-1]
 gi|295888168|gb|EFG67981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. Ch1-1]
          Length = 85

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP +    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNNAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D    LE   ++ ++Y
Sbjct: 59 IPRD-PEHLETPGELMAKY 76


>gi|317152579|ref|YP_004120627.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316942830|gb|ADU61881.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 354

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C+ C    C   C V  F +  +         C+ C  C   CP +
Sbjct: 107 CMHCLEPSCASACFVAAFSKDPSGAVTYDESVCVGCRYCMVACPFE 152


>gi|256829783|ref|YP_003158511.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578959|gb|ACU90095.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 173

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           V   C  C + DC+  CP       E+    +H D+C  CG C   CP   I+ 
Sbjct: 49  VPSVCFQCANPDCLAACPEGAIRHDESGTVLVHTDKCTGCGGCVDACPWGQIRM 102



 Score = 37.3 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T+ C  C    CV+ CP      G   +AI  D C     C  EC  +A+        
Sbjct: 80  VHTDKCTGC--GGCVDACPWGQIRMGAKNVAIKCDLCGGEPSCVAECSAEALVFTEPDKD 137


>gi|320115078|ref|YP_004185237.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii
          Ako-1]
 gi|319928169|gb|ADV78854.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii
          Ako-1]
          Length = 575

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  CPV           +    CI CG C  ECP +A
Sbjct: 10 NCKNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCVIECPQNA 54


>gi|238919983|ref|YP_002933498.1| hypothetical protein NT01EI_2087 [Edwardsiella ictaluri 93-146]
 gi|259646560|sp|C5BDE6|RNFB_EDWI9 RecName: Full=Electron transport complex protein rnfB
 gi|238869552|gb|ACR69263.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 191

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
             +   NCI C  T C++ CPVD           +  D+C  CG+C P CP   I+
Sbjct: 109 ALIDEANCIGC--TKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCIQ 162


>gi|225568913|ref|ZP_03777938.1| hypothetical protein CLOHYLEM_04992 [Clostridium hylemonae DSM
          15053]
 gi|225162412|gb|EEG75031.1| hypothetical protein CLOHYLEM_04992 [Clostridium hylemonae DSM
          15053]
          Length = 571

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +C  C    CV  C V           I  D CI+CG C   CP +A
Sbjct: 10 SCRHCYK--CVRNCEVKAISVQNEQAHIMKDHCINCGHCLEVCPQNA 54


>gi|156537914|ref|XP_001608142.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Nasonia
          vitripennis]
          Length = 608

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C   CPV                 +I  + CI CG+C  +CP +A
Sbjct: 19 VNTDKCKPKRCR-QECKRSCPVVRMGKLCIEVTPNSKIASISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|89893347|ref|YP_516834.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332795|dbj|BAE82390.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 190

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           + ++  C  C + +C+ VCP   + +  + + +H PD+C  C  C   CP  A
Sbjct: 60  FFLSTACNHCANPECLRVCPYGAYAKRRDGIVLHFPDKCGSCKSCVASCPFGA 112


>gi|83746832|ref|ZP_00943879.1| Ferredoxin [Ralstonia solanacearum UW551]
 gi|207742236|ref|YP_002258628.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|300705255|ref|YP_003746858.1| 4fe-4S ferredoxin-type protein [Ralstonia solanacearum CFBP2957]
 gi|83726417|gb|EAP73548.1| Ferredoxin [Ralstonia solanacearum UW551]
 gi|206593624|emb|CAQ60551.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|299072919|emb|CBJ44275.1| 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum CFBP2957]
          Length = 82

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPKD-PAHAETHEQLMQKY 76


>gi|125974087|ref|YP_001037997.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|281418232|ref|ZP_06249252.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
          thermocellum JW20]
 gi|125714312|gb|ABN52804.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|281409634|gb|EFB39892.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
          thermocellum JW20]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C    CV  CP       +  +  +  +C+ C  C   CP D
Sbjct: 43 KCMHC--GACVNSCPTGALSFEDEKVRYNCAKCVHCDSCIKACPHD 86


>gi|300120025|emb|CBK19579.2| subunit NuoI (NDUFS8) [Blastocystis hominis]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C+   C  +CP                      I    CI CG C+  CPVDAI
Sbjct: 102 EERCIACRL--CEAICPAQVINIEAEMRPDGLRRTTRYDIDLSRCIFCGYCQEACPVDAI 159

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
               E  L  + K + E       +  K + L +    + +
Sbjct: 160 ---VENPLLEFAKESRE-----ELMYDKAKLLHNGDMWEPI 192


>gi|289523003|ref|ZP_06439857.1| putative iron-sulfur cluster-binding protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503546|gb|EFD24710.1| putative iron-sulfur cluster-binding protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 382

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            E C+ C    C +VCP            I+   C+ C  C   CP  A++   E  L  
Sbjct: 323 EEKCVKC--GICADVCPRKAIRMDP-LPRINRAMCVKCLCCHEMCPTGAMEVH-ENMLMK 378

Query: 66  WL 67
           +L
Sbjct: 379 FL 380


>gi|255528388|ref|ZP_05395190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255507925|gb|EET84363.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T++  + CI C    C +VCP                 C  C  C   CP  +I+
Sbjct: 188 TFIADDTCIGC--GRCEKVCPAKVISMHNGKPK-WSSNCESCQRCINTCPQKSIQ 239


>gi|269792087|ref|YP_003316991.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099722|gb|ACZ18709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 158

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           V   C  C    C + C     ++G + L     D+CI C +C   CP   +  D
Sbjct: 48  VPMMCFQCDEAPCAKACKPQALHKGTSGLVEFDKDKCIGCRMCVMACPFGNVSYD 102


>gi|197131392|gb|ACH47214.1| NADH-plastoquinone oxidoreductase subunit I [Pelargonium
           cotyledonis]
          Length = 173

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|167751145|ref|ZP_02423272.1| hypothetical protein EUBSIR_02130 [Eubacterium siraeum DSM 15702]
 gi|167655860|gb|EDR99989.1| hypothetical protein EUBSIR_02130 [Eubacterium siraeum DSM 15702]
          Length = 144

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV+ C      + +  ++     C+ C  C   CP   I    +
Sbjct: 59  CRHCETPLCVKSCITGALSQKDGIISCDESRCVGCYTCVLACPYGCIVTIED 110


>gi|160932075|ref|ZP_02079466.1| hypothetical protein CLOLEP_00909 [Clostridium leptum DSM 753]
 gi|156868677|gb|EDO62049.1| hypothetical protein CLOLEP_00909 [Clostridium leptum DSM 753]
          Length = 142

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  CK   CV+ C        +  + ++ D+C+ C  C   CP   + P     ++ 
Sbjct: 57  SCRHCKEPLCVKSCITGALSVEDGVITVNRDKCVGCYTCILSCPYGCVMPSENGVIQK 114


>gi|149920260|ref|ZP_01908731.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
 gi|149818847|gb|EDM78287.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
          Length = 96

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC------IDCGVCEPECPVDA 54
          M   +TE CI C    C   CP +   EGE    I P+ C       +   C+  CPV+ 
Sbjct: 1  MATHITEECINC--GACEPECPNEAISEGEEIYVIDPNLCTECVGFHEYEACQAVCPVEC 58

Query: 55 IKPDTE 60
            PD E
Sbjct: 59 CLPDPE 64


>gi|91204283|emb|CAJ71936.1| hypothetical protein kustc1191 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 308

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V  E  CI C    CVE C  D     +  + I  ++C++CG+C   CPV  I
Sbjct: 187 FVDAECECIEC--MKCVEACREDAITVKDAQVTIDKEKCVECGICAKVCPVGTI 238


>gi|332877880|ref|ZP_08445618.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684175|gb|EGJ57034.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV +NC  C   +CV+ CP       +   A   D C  C  C   CPV     DT    
Sbjct: 207 VVNDNCYGC--GECVDWCPTGAITIADGRSATRVDLCTKCCACVKFCPVGGRTFDTPYTA 264

Query: 64  E 64
            
Sbjct: 265 M 265


>gi|326390414|ref|ZP_08211972.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993532|gb|EGD51966.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 577

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C+ + CP     + +   +I PD+C  C VC   CP DAI
Sbjct: 525 IDQDKCKKC--GLCLRIGCP--AISKKDGIFSIDPDQCTGCTVCMQVCPFDAI 573


>gi|282865521|ref|ZP_06274572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
 gi|282559565|gb|EFB65116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 9   CILCKHT--DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +        CI C  C   CP    K D +  L+
Sbjct: 53  CMHCEDPVAPCAEVCPADAILVTADGVVQEADTTRCIGCANCVNACPFGVPKIDLQAKLQ 112


>gi|229577808|ref|YP_002836144.1| NADH-plastoquinone oxidoreductase subunit I [Megaleranthis
           saniculifolia]
 gi|226933936|gb|ACO92069.1| NADH-plastoquinone oxidoreductase subunit I [Megaleranthis
           saniculifolia]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|237808740|ref|YP_002893180.1| putative glutamate synthase (NADPH) small subunit [Tolumonas
           auensis DSM 9187]
 gi|237501001|gb|ACQ93594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tolumonas
           auensis DSM 9187]
          Length = 544

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 8   NCILCKHTD-CVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +C  C   D C   CP +   +    +   I  D+C  C  C  +CP  AI+  +E   +
Sbjct: 485 SCGNCFECDGCYGACPEEAIIKLGKGSGYRIDYDKCTGCSACYNQCPCHAIEMVSEEVQK 544


>gi|218283186|ref|ZP_03489264.1| hypothetical protein EUBIFOR_01852 [Eubacterium biforme DSM 3989]
 gi|218216064|gb|EEC89602.1| hypothetical protein EUBIFOR_01852 [Eubacterium biforme DSM 3989]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             + CI C H  C+E CP +     +  + I+  +C  C  C  ECP +A+    E
Sbjct: 57  DPKKCINCHH--CIETCPKNAMKTIDKSIKINHSQCSGCEKCVYECPKNALSAQGE 110


>gi|192289828|ref|YP_001990433.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Rhodopseudomonas
           palustris TIE-1]
 gi|192283577|gb|ACE99957.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Rhodopseudomonas
           palustris TIE-1]
          Length = 314

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +T+  C  C+   CV++CP  C     + +   + P++C  C +CE  CP  AI+   + 
Sbjct: 248 ITDAWCKSCE--ICVKLCPERCLKLNADRVVELVAPEKCTGCRLCEWLCPDFAIRVHLDT 305

Query: 62  GLELW 66
                
Sbjct: 306 EAPAM 310


>gi|253700753|ref|YP_003021942.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251775603|gb|ACT18184.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 436

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          V+   CI C    C  VCP++     E     I  ++CI C  C   CP  A++ 
Sbjct: 16 VIAGKCIAC-GARCQSVCPINGVEMSEQGEPLIETEKCIGCVKCVKACPAGALEM 69



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             + TE CI C    CV+ CP      FY  E    I   E       + E      K  
Sbjct: 45  PLIETEKCIGCVK--CVKACPAGALEMFYTPEELAIIASFEKHGGEEIDEEELERRRKVA 102

Query: 59  TEPGLELWLKIN 70
              G+ ++++ N
Sbjct: 103 AYKGVWVFVEQN 114


>gi|156598257|gb|ABU85392.1| NADH-plastoquinone oxidoreductase subunit I [Ginkgo biloba]
          Length = 183

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWKFGEDIGKKRLENYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|162452620|ref|YP_001614987.1| thioredoxin reductase [Sorangium cellulosum 'So ce 56']
 gi|161163202|emb|CAN94507.1| hypothetical protein, similar to thioredoxin reductase [Sorangium
           cellulosum 'So ce 56']
          Length = 773

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           + T  C+ C    CV+ CP D     +    +  P+ C    +CE  CP  ++  +
Sbjct: 339 IDTTTCLGCY--ACVDACPYDVLAIEKYVAVVARPEACCGLTLCEQRCPNGSLTIE 392


>gi|157964034|ref|YP_001504068.1| cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           pealeana ATCC 700345]
 gi|157849034|gb|ABV89533.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           pealeana ATCC 700345]
          Length = 473

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDTTMERMGYEKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|126698736|ref|YP_001087633.1| electron transport complex protein [Clostridium difficile 630]
 gi|115250173|emb|CAJ67994.1| Electron transport complex protein [Clostridium difficile]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  CI C    CV+ C  D     +    I P++C+ C  C  +CP   I  D
Sbjct: 213 TAGCIGC--GMCVKACKFDAIIFEDKIAKIDPNKCVGCMQCVAKCPTKVISGD 263



 Score = 38.4 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +    C+ C    CV  CP          +  + I  + C+ C VC+ +C  DAI+ + +
Sbjct: 240 IDPNKCVGC--MQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELK 297

Query: 61  PGLE 64
              +
Sbjct: 298 EKHK 301



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C     C + C  D     +    I  ++C++CG C+  CP   I        E+ ++ 
Sbjct: 141 GCLGLGTCKDACKFDAISIVDGIAVIDEEKCVNCGKCKEVCPKGIIIT-KPESQEVVVEC 199

Query: 70  NSE 72
           NS+
Sbjct: 200 NSK 202



 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 18/75 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
             +  E C+ C    C EVCP              V+C  +             CI CG+
Sbjct: 164 AVIDEEKCVNC--GKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGM 221

Query: 46  CEPECPVDAIKPDTE 60
           C   C  DAI  + +
Sbjct: 222 CVKACKFDAIIFEDK 236


>gi|34500968|ref|NP_904153.1| NADH dehydrogenase subunit I [Amborella trichopoda]
 gi|75294671|sp|Q70XW0|NDHI_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|34481683|emb|CAD45160.1| NADH dehydrogenase 18kD subunit [Amborella trichopoda]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|27380595|ref|NP_772124.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gi|27353760|dbj|BAC50749.1| blr5484 [Bradyrhizobium japonicum USDA 110]
          Length = 656

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             C    C+++CP        + +A++ D C  CG C   CP  A      P       +
Sbjct: 266 TGC--HRCLDLCPTGAITPDGDHVAVNADVCAGCGQCAAACPTGAASYALPPADTQLQML 323

Query: 70  NSEY 73
            +  
Sbjct: 324 RAML 327



 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V T  C LC    CV  CP            +   E  C+ CG+C+  CP   I
Sbjct: 500 VDTGGCTLCL--SCVSACPTGALRADPERPVLKFVEDACVQCGLCQSTCPEKVI 551


>gi|15616781|ref|NP_239993.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133970|sp|P57259|NUOI_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|25282723|pir||G84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain I [imported] -
           Buchnera sp. (strain APS)
 gi|10038844|dbj|BAB12879.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC                F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVDCISLQKSEKTDGRWYPKFFRINFSRCIFCGLCEEACPTAAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LMPDFELSDF 125


>gi|159115416|ref|XP_001707931.1| Nitroreductase Fd-NR2 [Giardia lamblia ATCC 50803]
 gi|157436039|gb|EDO80257.1| Nitroreductase Fd-NR2 [Giardia lamblia ATCC 50803]
          Length = 264

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKP 57
          T+ C  C    CVEVCP            +   + D CI CG C   CP ++I  
Sbjct: 10 TDTCTGCNM--CVEVCPTAVLKVDPETKVVAYANRDNCIFCGHCGAICPTESISM 62


>gi|326575679|gb|EGE25602.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis CO72]
          Length = 275

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ E  CI C  T C+  CPVD      ++  +I  D C  C +C   CPVD I
Sbjct: 112 IIQEADCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163


>gi|300681098|sp|P0CG28|RPOD_METAC RecName: Full=DNA-directed RNA polymerase subunit D
          Length = 266

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKP 57
           M  +  ENC  C    C   CP       E    I      +C  C +CE  C ++AIK 
Sbjct: 165 MPVITIENCDAC--GHCAAECPKGIISVEEAGAKIAEEDIMKCSICRLCEQVCDINAIKV 222

Query: 58  DTEPGLELW 66
           D      ++
Sbjct: 223 DFYENSFVF 231


>gi|289662868|ref|ZP_06484449.1| ferredoxin [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 139

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 81  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 133


>gi|304316606|ref|YP_003851751.1| hypothetical protein Tthe_1147 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778108|gb|ADL68667.1| protein of unknown function DUF362 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 378

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    CV  CP       +    +    CI C  C+  CP  A+        +L+
Sbjct: 319 DVCKSC--GICVSNCPPKALKMIDKKPTVDLKTCIRCFCCQELCPHKAVSIKKPHIAKLF 376

Query: 67  L 67
            
Sbjct: 377 Y 377


>gi|253583402|ref|ZP_04860600.1| nitroreductase [Fusobacterium varium ATCC 27725]
 gi|251833974|gb|EES62537.1| nitroreductase [Fusobacterium varium ATCC 27725]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
          M  +  E CI C    CV+ C  +  +       I    C+ CG C   CPVDA  I   
Sbjct: 1  MVSIDKEKCIGC--GACVKDCFPENLFLENGKAEI-KGRCMQCGHCIAVCPVDAVSITNY 57

Query: 59 TEPGLELW 66
           + G+E +
Sbjct: 58 PQEGIEEY 65


>gi|268678788|ref|YP_003303219.1| NADH-quinone oxidoreductase, chain I [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616819|gb|ACZ11184.1| NADH-quinone oxidoreductase, chain I [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C   C                  +I+   CI CG C   CP  AI
Sbjct: 89  SERCIGC--GLCEKICIAKCIRMETRIDEKSRKEVSQYSINFGRCIFCGYCAEVCPELAI 146

Query: 56  KPDTEPG 62
               E  
Sbjct: 147 VHGAEYE 153


>gi|237740309|ref|ZP_04570790.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 2_1_31]
 gi|294782599|ref|ZP_06747925.1| sulfite reductase, subunit C [Fusobacterium sp. 1_1_41FAA]
 gi|229422326|gb|EEO37373.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 2_1_31]
 gi|294481240|gb|EFG29015.1| sulfite reductase, subunit C [Fusobacterium sp. 1_1_41FAA]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A     +   
Sbjct: 172 DRCVTC--GACVKKCKKVSVEALRIENNKIVRDENKCIGCGECVINCPMSAWTRSPKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
           +L +     K N   A  W
Sbjct: 230 KLMIMGRTGKQNPRLAEDW 248


>gi|256422828|ref|YP_003123481.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
 gi|256037736|gb|ACU61280.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
          Length = 171

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC                F  I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVGCYL--CAAACPVDCIALQATEDENGRRYPEFFRINFSRCIFCGYCEEACPTYAIQ 106


>gi|227873972|ref|ZP_03992188.1| iron-sulfur protein [Oribacterium sinus F0268]
 gi|227840180|gb|EEJ50594.1| iron-sulfur protein [Oribacterium sinus F0268]
          Length = 253

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++++CI C    C  +CP+            + ++C  C  C   CP  AI
Sbjct: 189 ISDDCIGC--GLCASICPMGNLRIQNGKAV-NLEKCTMCYRCISSCPKKAI 236


>gi|157415787|ref|YP_001483043.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni
           81116]
 gi|172047188|sp|A8FNM9|NUOI_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157386751|gb|ABV53066.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748426|gb|ADN91696.1| NADH-quinone oxidoreductase subunit I [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931251|gb|EFV10221.1| NADH-quinone oxidoreductase, chain I family protein [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICISNCIRMETSLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 56  KPDTEPG 62
              TE  
Sbjct: 138 VHGTEYE 144


>gi|326391290|ref|ZP_08212831.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992685|gb|EGD51136.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 291

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C    C  +C  D     E    ++P  C  CG+C  +CPV+AIK   E
Sbjct: 61  AVIDKDKCIEC--GLCERLCRFDAISNFE----VNPYYCEGCGLCMYKCPVEAIKLVEE 113


>gi|321455606|gb|EFX66734.1| hypothetical protein DAPPUDRAFT_189585 [Daphnia pulex]
          Length = 610

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVDCFYE-------GENFLAIHPDECIDCGVCEPECPVDA 54
          +  + C    C+  +C + CPV    +        +    I    CI CG+C  +CP +A
Sbjct: 21 INADKCKPKRCR-QECKKSCPVVRMGKLCIEVAPTDRIAVISETLCIGCGICVKKCPFEA 79

Query: 55 I 55
          I
Sbjct: 80 I 80


>gi|319941590|ref|ZP_08015916.1| electron transport complex protein rnfB [Sutterella wadsworthensis
           3_1_45B]
 gi|319804960|gb|EFW01802.1| electron transport complex protein rnfB [Sutterella wadsworthensis
           3_1_45B]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 1   MTY----VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           M +    +  E CI C    CV  CP D      ++  A+    C  C +C P CP+D I
Sbjct: 88  MPFARAQIRAEECIGCSW--CVRACPTDAIGGSPKHLHAVLEARCTGCSLCAPACPMDCI 145

Query: 56  KPDTEPGLELWLKINSEYATQW 77
             D       W + ++  A   
Sbjct: 146 --DFVEVGREWTREDARKAKLH 165


>gi|315637706|ref|ZP_07892909.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315477985|gb|EFU68715.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 289

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-TEP 61
           +   E+CI C    CV+VCP+D       F       C+ CG+CE  C    +K +    
Sbjct: 182 FFDKESCIDCNK--CVKVCPIDELDIKAGF----DIRCVQCGLCEVACEKVMLKFNKLSL 235

Query: 62  GLELWLKIN 70
             + +   N
Sbjct: 236 IKKKFDDRN 244


>gi|289670256|ref|ZP_06491331.1| ferredoxin [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 139

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C++ CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 81  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 133


>gi|256752102|ref|ZP_05492969.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749011|gb|EEU62048.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 291

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C    C E+C  D     E    ++P  C  CG+C  +CPV+AIK   E
Sbjct: 61  AVIDKDKCIEC--GLCEELCRFDAISNFE----VNPYYCEGCGLCMYKCPVEAIKLIEE 113


>gi|256004437|ref|ZP_05429417.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
          thermocellum DSM 2360]
 gi|255991578|gb|EEU01680.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
          thermocellum DSM 2360]
 gi|316941332|gb|ADU75366.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
          thermocellum DSM 1313]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C    CV  CP       +  +  +  +C+ C  C   CP D
Sbjct: 43 KCMHC--GACVNSCPTGALSFEDEKVRYNCAKCVHCDSCIKACPHD 86


>gi|311232771|gb|ADP85625.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio
           vulgaris RCH1]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 36/91 (39%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY----------------------------------EGE 30
             + C  C    CV  CPVD  +                                  +  
Sbjct: 290 DADACTGC--GLCVRACPVDALHVVRKDGQRTASNETVDARGDVPDDEAASSTARRGKAR 347

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             L +    C+ CGVC   CP  A++ +  P
Sbjct: 348 RRLEVDTSVCLGCGVCALRCPTGALRLEERP 378


>gi|237751588|ref|ZP_04582068.1| NADH-ubiquinone oxidoreductase [Helicobacter bilis ATCC 43879]
 gi|229372954|gb|EEO23345.1| NADH-ubiquinone oxidoreductase [Helicobacter bilis ATCC 43879]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 6   TENCILCKHT--DCVEVCPVDCFYEGENF------LAIHPDECIDCGVCEPECPVDAIKP 57
           +E CI C      C   C     +EGE+         I+   CI CG+C   CP  AI  
Sbjct: 91  SERCIGCGLCEKICTSNCIRILTHEGEDGRKKIDSYTINLGRCIYCGLCAEVCPELAIVM 150


>gi|226195339|ref|ZP_03790928.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|225932541|gb|EEH28539.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei Pakistan 9]
          Length = 189

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|167901877|ref|ZP_02489082.1| ferredoxin [Burkholderia pseudomallei NCTC 13177]
          Length = 177

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|167899013|ref|ZP_02486414.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           7894]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|325578318|ref|ZP_08148453.1| electron transport complex protein RnfB [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160054|gb|EGC72183.1| electron transport complex protein RnfB [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 194

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C  T C++ CPVD      +    I  D C  C +C   CP D I  
Sbjct: 102 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIADLCTGCELCVAPCPTDCISM 156


>gi|307328629|ref|ZP_07607802.1| NADH-quinone oxidoreductase, chain I [Streptomyces violaceusniger
           Tu 4113]
 gi|306885741|gb|EFN16754.1| NADH-quinone oxidoreductase, chain I [Streptomyces violaceusniger
           Tu 4113]
          Length = 207

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTDEERYSPGERYGRVYQINYLRCILCGLCVEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|297618254|ref|YP_003703413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297146091|gb|ADI02848.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + V   C+ C +  C++VCPV   Y       + +    CI C +C   CP      D E
Sbjct: 47  FSVPMMCLQCSNAACMQVCPVGAVYRDFATGAVMVDHSRCIRCKMCTNACPFGNNTFDLE 106


>gi|268597677|ref|ZP_06131844.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae FA19]
 gi|268599929|ref|ZP_06134096.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae MS11]
 gi|268602263|ref|ZP_06136430.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID18]
 gi|268604529|ref|ZP_06138696.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae PID1]
 gi|268682984|ref|ZP_06149846.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           PID332]
 gi|268687412|ref|ZP_06154274.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291042886|ref|ZP_06568627.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae DGI2]
 gi|293398104|ref|ZP_06642309.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae F62]
 gi|304389075|ref|ZP_07371119.1| NADH-quinone oxidoreductase subunit I [Neisseria meningitidis ATCC
           13091]
 gi|268551465|gb|EEZ46484.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae FA19]
 gi|268584060|gb|EEZ48736.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae MS11]
 gi|268586394|gb|EEZ51070.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID18]
 gi|268588660|gb|EEZ53336.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae PID1]
 gi|268623268|gb|EEZ55668.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           PID332]
 gi|268627696|gb|EEZ60096.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291013320|gb|EFE05286.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae DGI2]
 gi|291611367|gb|EFF40437.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae F62]
 gi|304336948|gb|EFM03138.1| NADH-quinone oxidoreductase subunit I [Neisseria meningitidis ATCC
           13091]
          Length = 164

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 62  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 119


>gi|218295768|ref|ZP_03496564.1| NADH-quinone oxidoreductase, chain I [Thermus aquaticus Y51MC23]
 gi|218243927|gb|EED10454.1| NADH-quinone oxidoreductase, chain I [Thermus aquaticus Y51MC23]
          Length = 182

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 18/65 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C    C   CP    Y                       I+   CI CG+CE  C
Sbjct: 51  EKCIGCSL--CAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAI 55
           P  AI
Sbjct: 109 PTGAI 113


>gi|166032538|ref|ZP_02235367.1| hypothetical protein DORFOR_02253 [Dorea formicigenerans ATCC
           27755]
 gi|166026895|gb|EDR45652.1| hypothetical protein DORFOR_02253 [Dorea formicigenerans ATCC
           27755]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +   ++CI C    CV+ CP++  +  +       ++C  C  C   CP +AI+ 
Sbjct: 182 AFQANDSCIGC--GQCVKKCPLNNIHLEQERPV-WGEKCTHCMACICYCPTEAIEY 234


>gi|40846358|gb|AAR92469.1| nitrite oxidoreductase beta subunit [Nitrobacter winogradskyi]
          Length = 513

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|91772823|ref|YP_565515.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91711838|gb|ABE51765.1| conserved methanogen protein with ferredoxin domains
           [Methanococcoides burtonii DSM 6242]
          Length = 535

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID--CGVCEPECPVDAIKPD 58
           +  E CI CK   CV+VCP D   + +  + I  D C    C  C   CP + +   
Sbjct: 476 IDMEGCIDCKK--CVDVCPNDALEQEDRSVRIRTDLCDGAHCQKCIHSCPENVLDWH 530


>gi|57238584|ref|YP_179715.1| NADH dehydrogenase subunit I [Campylobacter jejuni RM1221]
 gi|81675543|sp|Q5HSM0|NUOI_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|57167388|gb|AAW36167.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni
           RM1221]
 gi|315059021|gb|ADT73350.1| NADH-ubiquinone oxidoreductase chain I [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICISNCIRMETSLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 56  KPDTEPG 62
              TE  
Sbjct: 138 VHGTEYE 144


>gi|73541017|ref|YP_295537.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134]
 gi|72118430|gb|AAZ60693.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134]
          Length = 417

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +  E CI C    C + CP+D     E    +  D C  C  C   CP  AI  
Sbjct: 12 IDPEICIRCN--TCEDTCPIDAITHDERNYVVKADVCNACNACLSPCPTGAIDN 63


>gi|117920534|ref|YP_869726.1| formate dehydrogenase subunit beta [Shewanella sp. ANA-3]
 gi|117612866|gb|ABK48320.1| formate dehydrogenase beta subunit [Shewanella sp. ANA-3]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C    C++ C       +  N       ++CI CG C   CP +
Sbjct: 98  ACMHCADPACLKACSTSGAIVQHANGTVDFDSNKCIGCGYCASACPFN 145


>gi|331000330|ref|ZP_08324011.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329572126|gb|EGG53791.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPV 52
           ++ C  C+ + C E CP       E   +    D C+ CG+C   CP 
Sbjct: 145 SDQCKHCRTSPCHEACPTGAIVRNEFGGVYYQTDICMGCGMCVAACPF 192


>gi|325610505|gb|ADZ36453.1| NADH dehydrogenase 18 kDa subunit [Schima khasiana]
 gi|325610513|gb|ADZ36460.1| NADH dehydrogenase 18 kDa subunit [Gordonia lasianthus]
 gi|325610521|gb|ADZ36467.1| NADH dehydrogenase 18 kDa subunit [Franklinia alatamaha]
          Length = 167

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSAYDRHELN 136


>gi|297570904|ref|YP_003696678.1| NADH-quinone oxidoreductase, chain I [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931251|gb|ADH92059.1| NADH-quinone oxidoreductase, chain I [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 227

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 18/72 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI C  C   C
Sbjct: 77  EKCIGCEL--CAWACPADAIYVEAASNKPGEQYSPGERYGRVYQINYLRCIFCSYCIQAC 134

Query: 51  PVDAIKPDTEPG 62
           P  A+   TE  
Sbjct: 135 PTRALTMSTEYE 146


>gi|258514518|ref|YP_003190740.1| Cobyrinic acid ac-diamide synthase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778223|gb|ACV62117.1| Cobyrinic acid ac-diamide synthase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 286

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  + C  C    C E+C  D   EG     ++P  C  C  C   CP  AI      
Sbjct: 61  ATIDKDKCTGCNL--CQELCHFDAISEGM----VNPFLCEGCAFCFYICPEQAISLRDNV 114

Query: 62  GLELWLKINSEY 73
               ++  N+ Y
Sbjct: 115 CGHWFIS-NTRY 125


>gi|253744485|gb|EET00691.1| Nitroreductase Fd-NR2 [Giardia intestinalis ATCC 50581]
          Length = 264

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKP 57
          T+ C+ C    CVEVCP            +   + D CI CG C   CP   I  
Sbjct: 10 TDTCVGCNM--CVEVCPTMTLKVDPQTKVVAYANRDNCIFCGHCAAICPSSTISM 62


>gi|253729608|ref|YP_003029793.1| Ndhl [Bambusa oldhamii]
 gi|246367118|gb|ACS94729.1| Ndhl [Bambusa oldhamii]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP   +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|255308108|ref|ZP_05352279.1| putative flavodoxin [Clostridium difficile ATCC 43255]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  T+ CI C    CVE+CP++             + C  C  C   CP +AI+   +  
Sbjct: 185 FHYTDKCIGC--GKCVELCPLNNINLKNKKPV-WKNNCTHCMACICGCPTEAIEYKNKTQ 241

Query: 63  LEL 65
              
Sbjct: 242 NRE 244


>gi|224369370|ref|YP_002603534.1| HdrA4 [Desulfobacterium autotrophicum HRM2]
 gi|223692087|gb|ACN15370.1| HdrA4 [Desulfobacterium autotrophicum HRM2]
          Length = 1161

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 20/70 (28%)

Query: 4   VVTENCILCKHTDCVEVCPVD------------------CFYEGENFLAIHPDECIDCGV 45
           V    C  C    C +VCPV                     +   N   I  + C  CG 
Sbjct: 113 VDPNRCTGCNL--CAQVCPVSIDDPFNHGLSRTKAIYLPVPHAVPNIYTIDMNHCTLCGE 170

Query: 46  CEPECPVDAI 55
           CE  CP DAI
Sbjct: 171 CEQTCPFDAI 180



 Score = 40.7 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 9    CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C +C    C++ C           N + I P  C  CG C   C   A   +     +++
Sbjct: 1097 CSVC--GRCIDACAFGARTLDPDTNRIKIDPIICQGCGACASVCTNSAAYVNNFLDQQMF 1154

Query: 67   LKINS 71
              I++
Sbjct: 1155 EIIDA 1159


>gi|167908424|ref|ZP_02495629.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei NCTC
           13177]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|139437985|ref|ZP_01771538.1| Hypothetical protein COLAER_00525 [Collinsella aerofaciens ATCC
          25986]
 gi|133776182|gb|EBA40002.1| Hypothetical protein COLAER_00525 [Collinsella aerofaciens ATCC
          25986]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + +E CI C    CV  C  D      E  N  A   D CI CG C   CPV+AI  + +
Sbjct: 6  IDSEACIGC--GRCVRACASDGIVVKGERPNRCARVTDGCILCGGCVDACPVNAISIERD 63

Query: 61 P 61
           
Sbjct: 64 E 64


>gi|145588644|ref|YP_001155241.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047050|gb|ABP33677.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 485

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C+ C    CV+VCP                 CI CG C   C     K D   GL  +
Sbjct: 269 CVDCS--ICVQVCPTGIDIRDGLQY-----MCIGCGACIDACNQVMEKVDYPKGLIRY 319


>gi|167039598|ref|YP_001662583.1| thiamine pyrophosphate binding domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|256751499|ref|ZP_05492376.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300915152|ref|ZP_07132467.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter sp. X561]
 gi|307725076|ref|YP_003904827.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermoanaerobacter sp. X513]
 gi|166853838|gb|ABY92247.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Thermoanaerobacter sp. X514]
 gi|256749583|gb|EEU62610.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300888876|gb|EFK84023.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter sp. X561]
 gi|307582137|gb|ADN55536.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter sp. X513]
          Length = 577

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C  C    C+ + CP     + +   +I PD+C  C VC   CP DAI
Sbjct: 525 IDQDKCKKC--GLCLRIGCP--AISKKDGIFSIDPDQCTGCTVCMQVCPFDAI 573


>gi|59711541|ref|YP_204317.1| electron transport complex protein RnfB [Vibrio fischeri ES114]
 gi|197334877|ref|YP_002155697.1| electron transport complex protein RnfB [Vibrio fischeri MJ11]
 gi|75507049|sp|Q5E6B7|RNFB_VIBF1 RecName: Full=Electron transport complex protein rnfB
 gi|226735435|sp|B5FCN4|RNFB_VIBFM RecName: Full=Electron transport complex protein rnfB
 gi|59479642|gb|AAW85429.1| predicted iron-sulfur protein (Rnf/Rsx reducing system) [Vibrio
           fischeri ES114]
 gi|197316367|gb|ACH65814.1| electron transport complex protein RnfB [Vibrio fischeri MJ11]
          Length = 194

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +   EC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIESECTGCDLCVAPCPTDCIEM 161


>gi|85857985|ref|YP_460187.1| ferredoxin [Syntrophus aciditrophicus SB]
 gi|85721076|gb|ABC76019.1| sodium-translocating NADH-quinone reductase, subunit [Syntrophus
           aciditrophicus SB]
          Length = 287

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+     DCV  CP        +F  I  ++C+ CG C   CP + I
Sbjct: 146 ACLG--FGDCVAACPFGAITLDNSFPVIDVEKCVGCGSCVRTCPKNVI 191



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-CEPECPVDA 54
           CI CK   C++ CP        + + I   +C D GV C+  C    
Sbjct: 221 CITCKM--CIKACPAGAVRVEGDLIRIDHKKCADYGVECKEICVEKC 265


>gi|83590433|ref|YP_430442.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
           39073]
 gi|83573347|gb|ABC19899.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
           39073]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  E C  C    C   CP  C    E     +   C  CG+C   CP  A+    E   
Sbjct: 256 IDREACTECY--TCWIYCPDSCITRTEEGPVFNMKYCKGCGLCTAVCPSGALTNVPELDF 313

Query: 64  EL 65
           + 
Sbjct: 314 KD 315


>gi|15679708|ref|NP_276826.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622846|gb|AAB86186.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 160

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 9   CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C  +   C  +CPV    E +  L +  + CI C +C   CP   I  +TE     
Sbjct: 46  CLQCHPEKAPCARICPVGAIREVDGALVVDEESCILCKLCMVACPAGMIVMNTEKKSAE 104


>gi|51244627|ref|YP_064511.1| ferredoxin [Desulfotalea psychrophila LSv54]
 gi|50875664|emb|CAG35504.1| related to polyferredoxin [Desulfotalea psychrophila LSv54]
          Length = 291

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECPVDAIKPDTEP 61
           CI CK   CV+VCP D     +  + I    CI  G     +C  +CP    +    P
Sbjct: 221 CIGCK--ICVKVCPADAVSYIDGNVVIDHVACIAYGPSCEEICVAKCPRKIFRNYDSP 276



 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI     +C + CP D     ENF  +  ++C+ CGVC   CP + I
Sbjct: 146 ACIG--LGECADACPFDAITMVENFPVVDSNKCVSCGVCVRTCPKNII 191


>gi|110634782|ref|YP_674990.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110285766|gb|ABG63825.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 680

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             C  T C+++CP        N +AI  + C  CG C   CP  A       
Sbjct: 285 TGC--TRCLDLCPTGAITPAGNHVAIDAEICAGCGNCAAVCPTGAAAYAIPD 334



 Score = 38.8 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV  CP       E    L      C+ CG+C   CP   I    + 
Sbjct: 519 VDVEGCTLCL--SCVSACPTGALSDSEDRPALYFSESACVQCGLCAATCPEQVITLVPQV 576

Query: 62  GLELW 66
             + W
Sbjct: 577 DFQAW 581


>gi|317489724|ref|ZP_07948227.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316911190|gb|EFV32796.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 394

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C +VC   C    +N L I P+ CI CG C   CP  A++       E
Sbjct: 37 MKCADVCTSGCISYDDNELVIEPERCIGCGTCATVCPTCALEAHRPNDAE 86



 Score = 33.8 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 12/101 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  E C  C    C   CP     +     G   +   P +C+ C  C   CP  A++  
Sbjct: 290 IDPEKCSSC--QMCATFCPTGAIAKYADEDGSIGVTHRPVDCVKCRCCTDICPEGALELS 347

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAK-MDGVKQ 98
            E      L    E     P     K    +  +    +K 
Sbjct: 348 DEVFAVDLLSGAQERYPMKPL----KNPPGNPHQIWHSMKD 384


>gi|311694181|gb|ADP97054.1| electron transport complex, RnfABCDGE type, B subunit [marine
           bacterium HP15]
          Length = 140

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
             +  + CI C  T C++ CPVD      ++   +   EC  C +C   CPVD I   T 
Sbjct: 57  AVIREDECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVDPCPVDCIDMVTV 114

Query: 60  EPGLELW 66
           EP +  W
Sbjct: 115 EPDIRTW 121


>gi|300855794|ref|YP_003780778.1| nitroreductase family protein fused to ferredoxin
          domain-containing protein [Clostridium ljungdahlii DSM
          13528]
 gi|300435909|gb|ADK15676.1| nitroreductase family protein fused to ferredoxin domain protein
          [Clostridium ljungdahlii DSM 13528]
          Length = 303

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAI 55
          +    C  C    CV+VC     +  +  + +       CI CG C   CP  AI
Sbjct: 16 IDKNKCTTC--GLCVKVCKGAPLFIEDKIVKVDHSRVFGCIACGQCMAVCPNKAI 68


>gi|325680765|ref|ZP_08160303.1| iron-sulfur protein [Ruminococcus albus 8]
 gi|324107545|gb|EGC01823.1| iron-sulfur protein [Ruminococcus albus 8]
          Length = 142

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           TY V  +C  CK   CV  C        +  + I  ++C+ C  C   CP 
Sbjct: 53  TYAV--SCRHCKDPLCVRSCIAGAISIEDGAVKIDREKCVGCLTCVLVCPY 101


>gi|316935521|ref|YP_004110503.1| Indolepyruvate ferredoxin oxidoreductase [Rhodopseudomonas
           palustris DX-1]
 gi|315603235|gb|ADU45770.1| Indolepyruvate ferredoxin oxidoreductase [Rhodopseudomonas
           palustris DX-1]
          Length = 314

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +T+  C  C+   CV++CP  C     + +A  + P++C  C +CE  CP  AI+   +P
Sbjct: 248 ITDAWCKSCE--ICVKLCPERCLTLNADRIATLVAPEKCTGCRLCEWLCPDFAIRVHLDP 305

Query: 62  GLELW 66
                
Sbjct: 306 EAPAM 310


>gi|262068251|ref|ZP_06027863.1| sulfite reductase, subunit C [Fusobacterium periodonticum ATCC
           33693]
 gi|291378038|gb|EFE85556.1| sulfite reductase, subunit C [Fusobacterium periodonticum ATCC
           33693]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A     +   
Sbjct: 172 DRCVTC--GACVKKCKKVSVEALRIENNKIVRDENKCIGCGECVINCPMSAWTRSPKKYY 229

Query: 64  ELWL-----KINSEYATQW 77
           +L +     K N   A  W
Sbjct: 230 KLMIMGRTGKQNPRLAEDW 248


>gi|260655742|ref|ZP_05861211.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
 gi|260629358|gb|EEX47552.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
          Length = 56

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  VV  + C+ C+   CV  CPV+     ++   ++P+ C++CG C   CP +AI
Sbjct: 1  MAAVVNKDMCVGCE--TCVGTCPVEAISMADDKAVVNPEVCVECGACVSACPSEAI 54


>gi|255961435|ref|YP_003097630.1| NADH-plastoquinone oxidoreductase subunit I [Dendrocalamus
           latiflorus]
 gi|255040312|gb|ACT99972.1| NADH-plastoquinone oxidoreductase subunit I [Dendrocalamus
           latiflorus]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP   +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|291286138|ref|YP_003502954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883298|gb|ADD66998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +C  C +  C   CPV   Y+ E    + ++ D C +   C   CP  A +   +   
Sbjct: 58  SCNHCANPACTAACPVGAIYKREEDGIVIVNRDLCQNIKACAVACPYGAPQFGDDDSE 115


>gi|225174715|ref|ZP_03728713.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169842|gb|EEG78638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 276

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C+   C ++C  +          I+  +C  CGVC   C  DAI    +   + 
Sbjct: 210 ACTGCR--RCQKLCQFEAIDMAHGCCKINEQKCYGCGVCRQVCDTDAITLQEKSYAQE 265


>gi|219681536|ref|YP_002467921.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682092|ref|YP_002468476.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471217|ref|ZP_05635216.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621825|gb|ACL29981.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624379|gb|ACL30534.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085903|gb|ADP65985.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086476|gb|ADP66557.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087057|gb|ADP67137.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087614|gb|ADP67693.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC                F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVDCISLQKSEKTDGRWYPKFFRINFSRCIFCGLCEEACPTAAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LMPDFELSDF 125


>gi|218887758|ref|YP_002437079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758712|gb|ACL09611.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 180

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C   CP   + + +   + ++ D CI CG C   CPVDAI  D E
Sbjct: 54  CLACNPAPCALACPTGAYVQRKGGGVKVNRDLCIRCGNCAAACPVDAIHLDGE 106



 Score = 38.4 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI C   +C   CPVD  +         P  CI CG C P CP   I
Sbjct: 81  VNRDLCIRC--GNCAAACPVDAIHLDGETGL--PYVCIHCGRCVPFCPHACI 128


>gi|242278771|ref|YP_002990900.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio salexigens DSM 2638]
 gi|242121665|gb|ACS79361.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio salexigens DSM 2638]
          Length = 62

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 1  MTYVVT---ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
          M+YV+T   + C      +CV+VCP + +   +     ++ DEC+ C  C   C  DAI 
Sbjct: 1  MSYVITIDNDKCNG--DGECVDVCPTEVYELQDGKAVAVNEDECLGCESCIEVCEQDAIT 58

Query: 57 PDT 59
           + 
Sbjct: 59 IEE 61


>gi|218176295|ref|YP_002364552.1| NADH-plastoquinone oxidoreductase subunit I [Festuca arundinacea]
 gi|215882379|gb|ACJ70809.1| NADH-plastoquinone oxidoreductase subunit I [Festuca arundinacea]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFKKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|58198979|gb|AAW66136.1| ferredoxin [Rubrivivax gelatinosus]
          Length = 496

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI C  C   C     K     GL  +  
Sbjct: 283 CIDC--GLCVQVCPTGIDIRDGLQY-----ECIGCTACIDVCNGVMDKMKYPRGLIRYAT 335

Query: 69  IN 70
            N
Sbjct: 336 QN 337


>gi|78044002|ref|YP_359727.1| putative pyruvate formate-lyase activating enzyme
          [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996117|gb|ABB15016.1| putative pyruvate formate-lyase activating enzyme
          [Carboxydothermus hydrogenoformans Z-2901]
          Length = 281

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          C  C    CVE CP       +  +      C  C  C   CP 
Sbjct: 44 CQNC--GRCVEQCPAGALTNLDGKVTWDKAICQGCDRCLEVCPH 85


>gi|15676175|ref|NP_273307.1| NADH dehydrogenase subunit I [Neisseria meningitidis MC58]
 gi|59802064|ref|YP_208776.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA 1090]
 gi|121634122|ref|YP_974367.1| NADH dehydrogenase subunit I [Neisseria meningitidis FAM18]
 gi|161870814|ref|YP_001599987.1| NADH dehydrogenase subunit I [Neisseria meningitidis 053442]
 gi|194099639|ref|YP_002002770.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae NCCP11945]
 gi|218767059|ref|YP_002341571.1| NADH dehydrogenase subunit I [Neisseria meningitidis Z2491]
 gi|225077027|ref|ZP_03720226.1| hypothetical protein NEIFLAOT_02079 [Neisseria flavescens
           NRL30031/H210]
 gi|240014994|ref|ZP_04721907.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae DGI18]
 gi|240017442|ref|ZP_04723982.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA6140]
 gi|240081581|ref|ZP_04726124.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA19]
 gi|240113863|ref|ZP_04728353.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae MS11]
 gi|240116594|ref|ZP_04730656.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID18]
 gi|240118818|ref|ZP_04732880.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID1]
 gi|240122063|ref|ZP_04735025.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID24-1]
 gi|240124357|ref|ZP_04737313.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID332]
 gi|240126569|ref|ZP_04739455.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae SK-92-679]
 gi|240129034|ref|ZP_04741695.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae SK-93-1035]
 gi|241760745|ref|ZP_04758837.1| NADH-quinone oxidoreductase, i subunit [Neisseria flavescens SK114]
 gi|254494618|ref|ZP_05107789.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 1291]
 gi|254805706|ref|YP_003083927.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha14]
 gi|255067292|ref|ZP_05319147.1| NADH dehydrogenase, I subunit [Neisseria sicca ATCC 29256]
 gi|260439645|ref|ZP_05793461.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae DGI2]
 gi|261364357|ref|ZP_05977240.1| NADH dehydrogenase, I subunit [Neisseria mucosa ATCC 25996]
 gi|261378531|ref|ZP_05983104.1| NADH dehydrogenase, I subunit [Neisseria cinerea ATCC 14685]
 gi|268685149|ref|ZP_06152011.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-92-679]
 gi|298370371|ref|ZP_06981687.1| NADH dehydrogenase (ubiquinone), I subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|75355482|sp|Q5F623|NUOI_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81542192|sp|Q9JQM2|NUOI_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81832764|sp|Q7DDS1|NUOI_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633533|sp|A1KRT1|NUOI_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|7225474|gb|AAF40705.1| NADH dehydrogenase I, I subunit [Neisseria meningitidis MC58]
 gi|59718959|gb|AAW90364.1| putative NADH dehydrogenase I chain I [Neisseria gonorrhoeae FA
           1090]
 gi|120865828|emb|CAM09560.1| NADH dehydrogenase I chain I [Neisseria meningitidis FAM18]
 gi|121051067|emb|CAM07337.1| NADH dehydrogenase I chain I [Neisseria meningitidis Z2491]
 gi|161596367|gb|ABX74027.1| NADH dehydrogenase I chain I [Neisseria meningitidis 053442]
 gi|193934929|gb|ACF30753.1| NADH dehydrogenase I chain I [Neisseria gonorrhoeae NCCP11945]
 gi|224951584|gb|EEG32793.1| hypothetical protein NEIFLAOT_02079 [Neisseria flavescens
           NRL30031/H210]
 gi|226513658|gb|EEH63003.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 1291]
 gi|241318926|gb|EER55452.1| NADH-quinone oxidoreductase, i subunit [Neisseria flavescens SK114]
 gi|254669248|emb|CBA08124.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha14]
 gi|254670964|emb|CBA07648.1| NADH-ubiquinone oxidoreductase, chain I [Neisseria meningitidis
           alpha153]
 gi|254674112|emb|CBA09896.1| NADH-ubiquinone oxidoreductase, chain I [Neisseria meningitidis
           alpha275]
 gi|255048443|gb|EET43907.1| NADH dehydrogenase, I subunit [Neisseria sicca ATCC 29256]
 gi|268625433|gb|EEZ57833.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-92-679]
 gi|269145081|gb|EEZ71499.1| NADH dehydrogenase, I subunit [Neisseria cinerea ATCC 14685]
 gi|288567621|gb|EFC89181.1| NADH dehydrogenase, I subunit [Neisseria mucosa ATCC 25996]
 gi|298281831|gb|EFI23320.1| NADH dehydrogenase (ubiquinone), I subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|316985179|gb|EFV64131.1| NADH-quinone oxidoreductase subunit 9 [Neisseria meningitidis
           H44/76]
 gi|319411266|emb|CBY91673.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I;
           NDH-1, chain I) [Neisseria meningitidis WUE 2594]
 gi|325129047|gb|EGC51897.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           N1568]
 gi|325131604|gb|EGC54311.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M6190]
 gi|325135054|gb|EGC57682.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M13399]
 gi|325137077|gb|EGC59673.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M0579]
 gi|325139141|gb|EGC61687.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           ES14902]
 gi|325141087|gb|EGC63590.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           CU385]
 gi|325143091|gb|EGC65438.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           961-5945]
 gi|325143161|gb|EGC65507.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           961-5945]
 gi|325145244|gb|EGC67523.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240013]
 gi|325145315|gb|EGC67593.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240013]
 gi|325197536|gb|ADY92992.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           G2136]
 gi|325199454|gb|ADY94909.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           H44/76]
 gi|325202921|gb|ADY98375.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240149]
 gi|325203367|gb|ADY98820.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240355]
 gi|325205336|gb|ADZ00789.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M04-240196]
 gi|325207280|gb|ADZ02732.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 114


>gi|146294999|ref|YP_001185423.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145566689|gb|ABP77624.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 475

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +     GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMERMGYPLGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|118580371|ref|YP_901621.1| cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM
           2379]
 gi|118503081|gb|ABK99563.1| Cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM
           2379]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    C  C   +C   C             I P+ C  CG C   CP  AI
Sbjct: 62  VDEALCDGC--GECGRFCQYHAIVSFGTKPVIFPEMCHGCGGCMAVCPRRAI 111


>gi|125972723|ref|YP_001036633.1| 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium thermocellum
           ATCC 27405]
 gi|125712948|gb|ABN51440.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           thermocellum ATCC 27405]
          Length = 151

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   CV+ C        +  +++  ++C+ C  C   CP  A+ P  +  ++ 
Sbjct: 66  SCRHCEEPLCVKGCITGALSVKDGVISVDQNKCVGCFTCILCCPYGAVSPGEKSVIQK 123


>gi|323492347|ref|ZP_08097500.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG
           20546]
 gi|323313394|gb|EGA66505.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG
           20546]
          Length = 194

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|293396259|ref|ZP_06640538.1| electron transport complex protein RnfB [Serratia odorifera DSM
           4582]
 gi|291421239|gb|EFE94489.1| electron transport complex protein RnfB [Serratia odorifera DSM
           4582]
          Length = 191

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP D I+ 
Sbjct: 109 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVITDLCTGCDLCVAPCPTDCIEM 163


>gi|317050948|ref|YP_004112064.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurispirillum indicum S5]
 gi|316946032|gb|ADU65508.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurispirillum indicum S5]
          Length = 779

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 7   ENCILCKHTD----CVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAIKP 57
           + C+ C +      C ++CP       EN           ++CI CG+C   CP      
Sbjct: 710 DRCMSCGYCRDCHFCEDICPEQAIVRRENGDGTFEYCSLDEKCIGCGICAGVCPCG--IW 767

Query: 58  DTEPGLELWLK 68
             E  LE +L+
Sbjct: 768 VMEDNLEKYLE 778


>gi|254509402|ref|ZP_05121485.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           16]
 gi|219547676|gb|EED24718.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           16]
          Length = 193

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 160


>gi|212691689|ref|ZP_03299817.1| hypothetical protein BACDOR_01184 [Bacteroides dorei DSM 17855]
 gi|212665878|gb|EEB26450.1| hypothetical protein BACDOR_01184 [Bacteroides dorei DSM 17855]
          Length = 510

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + T  C  C    C   C   C         I    C+ C  C  +C  DAIK  +  
Sbjct: 219 PVIDTSKCNGC--GLCARNCKSSC--INPKAHEIDYSRCVACMDCLGKCRQDAIKYVSGA 274

Query: 62  GLELWLKINSE 72
            ++    +  E
Sbjct: 275 IIQKKQVLRRE 285



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 16/76 (21%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPEC- 50
           + +NCI         +C   CP                     ++ + CI CG CE  C 
Sbjct: 433 IAQNCIVNTDKVSCGNCARHCPTGAIQMIPKDENDESSPKIPVVNTERCIGCGACENLCP 492

Query: 51  --PVDAIKPDTEPGLE 64
             P  AI  +      
Sbjct: 493 ARPFSAIYVEGHEMHR 508



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 17  CVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  +CPV                I   +C  CG+C   C    I P      
Sbjct: 198 CNTICPVGTVLGLLSRYSYFKPVIDTSKCNGCGLCARNCKSSCINPKAHEID 249


>gi|197303568|ref|ZP_03168607.1| hypothetical protein RUMLAC_02290 [Ruminococcus lactaris ATCC
           29176]
 gi|197297566|gb|EDY32127.1| hypothetical protein RUMLAC_02290 [Ruminococcus lactaris ATCC
           29176]
          Length = 264

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP            I  ++C +CG+C  +CP  +I
Sbjct: 218 CIGCKL--CEKNCPSGAVTVTNFLAHIDAEKCTNCGICAEKCPRKSI 262



 Score = 41.5 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 8   NCI-LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C   C     CV+ CP D  +  +    +  + C  CG C   CP   I+       + 
Sbjct: 139 SCNAGCLGFGSCVKACPFDAIHVVDGIATVDKEVCRACGKCIAACPKHLIELI-PYSQKT 197

Query: 66  WLKIN 70
           ++K N
Sbjct: 198 FVKCN 202


>gi|281357174|ref|ZP_06243663.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
 gi|281316205|gb|EFB00230.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
          Length = 393

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 8/51 (15%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEG------ENFLAIHPDECIDCGVCEPECP 51
          + C  C    C+  CP                  +    CI CG+C   CP
Sbjct: 14 DKCTGC--GACIAKCPRQAVRLKFDPERLSRRTVVDDKLCIQCGMCRQACP 62


>gi|90418565|ref|ZP_01226477.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90338237|gb|EAS51888.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 576

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V T+ C LC    CV  CP       E    L+     C+ CG+CE  CP   I  +  
Sbjct: 416 HVQTDGCTLC--HACVTACPTGALSASEDRPLLSFSHGACVQCGLCESTCPEQVITLEPT 473

Query: 61  PGLELW 66
                W
Sbjct: 474 LDFAAW 479



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
             C  T C++ C +         + I    C  CG C   CP  A
Sbjct: 186 TGC--TRCLDACAMQAIAPAGEHVTIDAYVCAGCGNCAAVCPTGA 228


>gi|91775091|ref|YP_544847.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus
          flagellatus KT]
 gi|91709078|gb|ABE49006.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
          flagellatus KT]
          Length = 85

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y+GE    I+P+ C +C        C+  CPV  
Sbjct: 1  MALMITDECINCD--VCEPECPNGAIYQGEEIYEINPNLCTECVGHFSNPQCQDVCPVGC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   +++ +Y
Sbjct: 59 IPHD-PDHAETHEQLHQKY 76


>gi|78355633|ref|YP_387082.1| ferredoxin [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218038|gb|ABB37387.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 289

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           +CI   + DCV  CP D  Y     + I  ++C  CG C   CP +
Sbjct: 139 SCIG--YGDCVRGCPFDAMYIENGLVHIDEEKCTSCGACIRICPRN 182



 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 18/72 (25%)

Query: 3   YVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGVC 46
           ++  E C  C    C+ +CP              V C  + +    ++  E  CI+C  C
Sbjct: 163 HIDEEKCTSC--GACIRICPRNILELIPRRARVMVYCSTQDKMKAVMNVCEAGCINCAKC 220

Query: 47  EPECPVDAIKPD 58
             +CP +AI  +
Sbjct: 221 VKKCPANAITQE 232



 Score = 35.3 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECPVDAIKP 57
           CI C    CV+ CP +   +    + I    C+  G      C   CP + ++ 
Sbjct: 214 CINC--AKCVKKCPANAITQEGGKIMIDQKACLAFGPECGEACVEACPRNILRH 265


>gi|24375408|ref|NP_719451.1| periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis
          MR-1]
 gi|24350246|gb|AAN56895.1|AE015824_6 periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis
          MR-1]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C  C    C + CP          +  I  D+C+ CG C   CP  AI
Sbjct: 21 KCKGCD--ACKQFCPTHAINGASGAVHSIDEDKCLSCGQCLINCPFSAI 67


>gi|21227069|ref|NP_632991.1| glutamate synthase, large chain [Methanosarcina mazei Go1]
 gi|20905394|gb|AAM30663.1| glutamate synthase, large chain [Methanosarcina mazei Go1]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  + C+ C    C+E C    +    + + I   +C  C  C   CP DAI
Sbjct: 14 IDRDQCMDC--GRCIENCSYGVYRREGDKILIESRKCTACLRCVSMCPRDAI 63


>gi|56478184|ref|YP_159773.1| NADH dehydrogenase subunit I [Aromatoleum aromaticum EbN1]
 gi|81356980|sp|Q5P1E2|NUOI_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56314227|emb|CAI08872.1| NADH dehydrogenase I , chain I [Aromatoleum aromaticum EbN1]
          Length = 161

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVDA+
Sbjct: 59  EERCIACKL--CEAVCPALAITIESEQRDDGSRRTKRYDIDLTKCIFCGFCEEACPVDAV 116


>gi|120599773|ref|YP_964347.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146292291|ref|YP_001182715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120559866|gb|ABM25793.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563981|gb|ABP74916.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319425591|gb|ADV53665.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens 200]
          Length = 214

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           VV   C  C+   C EVCP       +      I  + C+ CG C  +CP   I
Sbjct: 110 VVPSTCRHCE--VCTEVCPQQAISTNQQTGAKVIDEERCVGCGYCADKCPQQVI 161


>gi|118578917|ref|YP_900167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118501627|gb|ABK98109.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 435

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCF---------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C + CP++            + +    I    C+ CGVC  +CP  A 
Sbjct: 290 EKCSGC--GLCAQACPINAIAMVAADTRSPKRKQDAVIDTAICLGCGVCALKCPSGAC 345


>gi|219666619|ref|YP_002457054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219536879|gb|ACL18618.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 185

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           + ++  C  C + +C+ VCP   + +  + + +H PD+C  C  C   CP  A
Sbjct: 55  FFLSTACNHCANPECLRVCPYGAYAKRRDGIVLHFPDKCGSCKSCVASCPFGA 107


>gi|53722687|ref|YP_111672.1| formate dehydrogenase-O, iron-sulfur subunit [Burkholderia
           pseudomallei K96243]
 gi|76819106|ref|YP_335888.1| formate dehydrogenase subunit beta [Burkholderia pseudomallei
           1710b]
 gi|126444663|ref|YP_001063389.1| formate dehydrogenase subunit beta [Burkholderia pseudomallei 668]
 gi|134278605|ref|ZP_01765319.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305]
 gi|167724435|ref|ZP_02407671.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           DM98]
 gi|167743399|ref|ZP_02416173.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 14]
 gi|167820584|ref|ZP_02452264.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 91]
 gi|167915699|ref|ZP_02502790.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 112]
 gi|167923540|ref|ZP_02510631.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           BCC215]
 gi|254265045|ref|ZP_04955910.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1710a]
 gi|52213101|emb|CAH39140.1| formate dehydrogenase-O, iron-sulfur subunit [Burkholderia
           pseudomallei K96243]
 gi|76583579|gb|ABA53053.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1710b]
 gi|126224154|gb|ABN87659.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 668]
 gi|134250389|gb|EBA50469.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305]
 gi|254216047|gb|EET05432.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1710a]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|261253562|ref|ZP_05946135.1| electron transport complex protein RnfB [Vibrio orientalis CIP
           102891]
 gi|260936953|gb|EEX92942.1| electron transport complex protein RnfB [Vibrio orientalis CIP
           102891]
          Length = 194

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|240102569|ref|YP_002958878.1| hypothetical protein TGAM_0512 [Thermococcus gammatolerans EJ3]
 gi|239910123|gb|ACS33014.1| 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS
           reductase), containing one PUA domain and 2 4Fe-4S
           binding domains [Thermococcus gammatolerans EJ3]
          Length = 634

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    CV  CP +     E    + +  + C  C  C   CP+  I
Sbjct: 579 CVGC--GVCVGKCPEEALSIDEKSKKIVVDWNRCTHCRECMEVCPLLKI 625


>gi|269792006|ref|YP_003316910.1| Cobyrinic acid ac-diamide synthase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099641|gb|ACZ18628.1| Cobyrinic acid ac-diamide synthase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C   C  D  +  +  + +    C  CG C   CP  AI
Sbjct: 71  CEGC--GRCAAACRFDAIWLEDGEVRLDRRRCEGCGACAVVCPTGAI 115


>gi|255102246|ref|ZP_05331223.1| putative flavodoxin [Clostridium difficile QCD-63q42]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  T+ CI C    CVE+CP++             + C  C  C   CP +AI+   +  
Sbjct: 185 FHYTDKCIGC--GKCVELCPLNNINLKNKKPV-WKNNCTHCMACICGCPTEAIEYKNKTQ 241

Query: 63  LEL 65
              
Sbjct: 242 NRE 244


>gi|183217791|ref|YP_001837411.1| NADH dehydrogenase subunit I [Guizotia abyssinica]
 gi|179366306|gb|ACB86577.1| NADH-plastoquinone oxidoreductase subunit I [Guizotia abyssinica]
          Length = 166

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTFDRHELN 136


>gi|126700739|ref|YP_001089636.1| putative flavodoxin [Clostridium difficile 630]
 gi|115252176|emb|CAJ70014.1| putative flavodoxin/nitric oxide synthase [Clostridium difficile]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  T+ CI C    CVE+CP++             + C  C  C   CP +AI+   +  
Sbjct: 185 FHYTDKCIGC--GKCVELCPLNNINLKNKKPV-WKNNCTHCMACICGCPTEAIEYKNKTQ 241

Query: 63  LEL 65
              
Sbjct: 242 NRE 244


>gi|90022063|ref|YP_527890.1| putative ferredoxin [Saccharophagus degradans 2-40]
 gi|89951663|gb|ABD81678.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 484

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCPVD              ECI+CG+C   C     K +   GL  +
Sbjct: 280 CIDCSW--CVQVCPVDIDIRDGL-----QFECINCGLCVDACNAVMDKMEYPRGLIRF 330


>gi|56460895|ref|YP_156176.1| electron transport complex protein RnfB [Idiomarina loihiensis
           L2TR]
 gi|56179905|gb|AAV82627.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Idiomarina
           loihiensis L2TR]
          Length = 193

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I  
Sbjct: 107 AVIREDECIGC--TKCIQACPVDAILGAAKQMHTVIEHECTGCDLCVEPCPVDCIDM 161


>gi|148264481|ref|YP_001231187.1| nitroreductase [Geobacter uraniireducens Rf4]
 gi|146397981|gb|ABQ26614.1| nitroreductase [Geobacter uraniireducens Rf4]
          Length = 303

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH---PDECIDCGVCEPECPVDAI 55
            +   +C  C    C  +CP++   +    +AI       CI CG C   CP   I
Sbjct: 14 PVIDRNSCTAC--GACAAICPLEVLTQTATGIAIDNAAMFGCIACGQCMMVCPAHCI 68


>gi|53716344|ref|YP_106249.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|67640777|ref|ZP_00439572.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei GB8
           horse 4]
 gi|121597338|ref|YP_991287.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1]
 gi|124381274|ref|YP_001025697.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126447842|ref|YP_001077773.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|126457799|ref|YP_001076291.1| formate dehydrogenase subunit beta [Burkholderia pseudomallei
           1106a]
 gi|166999433|ref|ZP_02265272.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei PRL-20]
 gi|167828947|ref|ZP_02460418.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9]
 gi|167850419|ref|ZP_02475927.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           B7210]
 gi|217422403|ref|ZP_03453906.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 576]
 gi|226200065|ref|ZP_03795614.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510552|ref|ZP_04523267.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|242312971|ref|ZP_04811988.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|254176258|ref|ZP_04882916.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|254185039|ref|ZP_04891628.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1655]
 gi|254186271|ref|ZP_04892789.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194033|ref|ZP_04900465.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13]
 gi|254201131|ref|ZP_04907496.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH]
 gi|254205101|ref|ZP_04911454.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU]
 gi|254301322|ref|ZP_04968766.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           406e]
 gi|254359225|ref|ZP_04975497.1| formate dehydrogenase, beta subunit [Burkholderia mallei
           2002721280]
 gi|52422314|gb|AAU45884.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|121225136|gb|ABM48667.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1]
 gi|126231567|gb|ABN94980.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|126240696|gb|ABO03808.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|147748743|gb|EDK55818.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH]
 gi|147754687|gb|EDK61751.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU]
 gi|148028412|gb|EDK86372.1| formate dehydrogenase, beta subunit [Burkholderia mallei
           2002721280]
 gi|157810773|gb|EDO87943.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           406e]
 gi|157933957|gb|EDO89627.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697300|gb|EDP87270.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|169650784|gb|EDS83477.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13]
 gi|184215631|gb|EDU12612.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1655]
 gi|217394634|gb|EEC34653.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 576]
 gi|225927917|gb|EEH23955.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002757|gb|EEP52181.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238521562|gb|EEP85013.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei GB8
           horse 4]
 gi|242136210|gb|EES22613.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|243064499|gb|EES46685.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei PRL-20]
 gi|261826235|gb|ABM99453.2| formate dehydrogenase-O, beta subunit [Burkholderia mallei NCTC
           10229]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|124267483|ref|YP_001021487.1| putative electron transport-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260258|gb|ABM95252.1| putative electron transport-related protein [Methylibium
           petroleiphilum PM1]
          Length = 228

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    CI C  T C++ CPVDC     +    +   +C  C +C P CPVD I  +  
Sbjct: 91  AVIDETWCIGC--TLCIKACPVDCIVGAAKQMHTVVESQCTGCELCIPVCPVDCISLEDA 148

Query: 61  PGLELWLK 68
                W  
Sbjct: 149 TQTTGWAA 156


>gi|303256951|ref|ZP_07342965.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|302860442|gb|EFL83519.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C    C ++CP     + +     I    C     C   CP +
Sbjct: 130 RCMQCFDAPCRKLCPFGAIDQTKQGAVKIDDRVCFGGAKCRDVCPWN 176


>gi|265753219|ref|ZP_06088788.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236405|gb|EEZ21900.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 508

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + T  C  C    C   C   C         I    C+ C  C  +C  DAIK  +  
Sbjct: 217 PVIDTSKCNGC--GLCARNCKSSC--INPKAHEIDYSRCVACMDCLGKCRQDAIKYVSGA 272

Query: 62  GLELWLKINSE 72
            ++    +  E
Sbjct: 273 IIQKKQVLRRE 283



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 16/76 (21%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPEC- 50
           + +NCI         +C   CP                     ++ + CI CG CE  C 
Sbjct: 431 IAQNCIVNTDKVSCGNCARHCPTGAIQMIPKDENDESSPKIPVVNTERCIGCGACENLCP 490

Query: 51  --PVDAIKPDTEPGLE 64
             P  AI  +      
Sbjct: 491 ARPFSAIYVEGHEMHR 506



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 17  CVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  +CPV                I   +C  CG+C   C    I P      
Sbjct: 196 CNTICPVGTVLGLLSRYSYFKPVIDTSKCNGCGLCARNCKSSCINPKAHEID 247


>gi|257063357|ref|YP_003143029.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
          subunit [Slackia heliotrinireducens DSM 20476]
 gi|256791010|gb|ACV21680.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
          subunit [Slackia heliotrinireducens DSM 20476]
          Length = 425

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C   C   C    +N +AI  ++CI CG C   CP +AI P     LE
Sbjct: 38 RCAAACVSGCINTHDNRIAIDAEKCIGCGTCATVCPTEAIAPRNPDDLE 86


>gi|237725760|ref|ZP_04556241.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229435568|gb|EEO45645.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 508

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + T  C  C    C   C   C         I    C+ C  C  +C  DAIK  +  
Sbjct: 217 PVIDTSKCNGC--GLCARNCKSSC--INPKAHEIDYSRCVACMDCLGKCRQDAIKYVSGA 272

Query: 62  GLELWLKINSE 72
            ++    +  E
Sbjct: 273 IIQKKQVLRRE 283



 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 16/76 (21%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPEC- 50
           + +NCI         +C   CP                     ++ + CI CG CE  C 
Sbjct: 431 IAQNCIVNTDKVSCGNCARHCPTGAIQMIPKDENDESSPKIPVVNTERCIGCGACENLCP 490

Query: 51  --PVDAIKPDTEPGLE 64
             P  AI  +      
Sbjct: 491 ARPFSAIYVEGHEMHR 506



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 17  CVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  +CPV                I   +C  CG+C   C    I P      
Sbjct: 196 CNTICPVGTVLGLLSRYSYFKPVIDTSKCNGCGLCARNCKSSCINPKAHEID 247


>gi|291286142|ref|YP_003502958.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|291286146|ref|YP_003502962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883302|gb|ADD67002.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883306|gb|ADD67006.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +C  C +  C   CPV   Y+ E    + ++ D C +   C   CP  A +   +   
Sbjct: 58  SCNHCANPACTAACPVGAIYKREEDGIVIVNRDLCQNIKACAVACPYGAPQFGDDDSE 115


>gi|212696414|ref|ZP_03304542.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM
          7454]
 gi|256545289|ref|ZP_05472653.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|325849213|ref|ZP_08170664.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676586|gb|EEB36193.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM
          7454]
 gi|256398970|gb|EEU12583.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|325480213|gb|EGC83280.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 58

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI
Sbjct: 1  MAYRIDENTCISC--GSCEGECPVQAIEQGDAAYEIDEDACIDCGSCAAVCPVEAI 54


>gi|154500502|ref|ZP_02038540.1| hypothetical protein BACCAP_04175 [Bacteroides capillosus ATCC
           29799]
 gi|150270733|gb|EDM98029.1| hypothetical protein BACCAP_04175 [Bacteroides capillosus ATCC
           29799]
          Length = 294

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  + C  C    C + CP+D           +  ECI CG C+  CP  AI 
Sbjct: 234 IDAQKCTQC--GACQKACPMDIPVHTTP----NSLECIRCGKCKAACPHGAIC 280


>gi|158320076|ref|YP_001512583.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140275|gb|ABW18587.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
          Length = 605

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAI 55
           YV  E CI C+   C++  CP     +     +   +I PD C+ C +C   CPV+AI
Sbjct: 536 YVDPEICISCR--SCIKTNCPPLKMKKYEGIEKLKSSIDPDMCVGCSICAQVCPVNAI 591


>gi|75675158|ref|YP_317579.1| nitrate reductase, beta subunit [Nitrobacter winogradskyi Nb-255]
 gi|74420028|gb|ABA04227.1| respiratory nitrate reductase beta subunit [Nitrobacter
           winogradskyi Nb-255]
          Length = 513

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|288800744|ref|ZP_06406201.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
 gi|288332205|gb|EFC70686.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
          Length = 55

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++ +C+ C    C++ CPV+   EG    +I+PD C +CG C   CP ++I
Sbjct: 1  MAYVISNDCVAC--GTCIDECPVEAISEGS-IYSINPDACTECGSCAAVCPTESI 52


>gi|283953816|ref|ZP_06371347.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794857|gb|EFC33595.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICISNCIRMETSLDENGRKKVSNYSINLGRCIYCGFCAEVCPELAI 137

Query: 56  KPDTEPG 62
              TE  
Sbjct: 138 VHGTEYE 144


>gi|295675400|ref|YP_003603924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1002]
 gi|295435243|gb|ADG14413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1002]
          Length = 85

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E    + ++Y
Sbjct: 59 IPRD-PNHPETREGLMAKY 76


>gi|255657071|ref|ZP_05402480.1| putative flavodoxin [Clostridium difficile QCD-23m63]
 gi|296452097|ref|ZP_06893808.1| probable flavodoxin [Clostridium difficile NAP08]
 gi|296877453|ref|ZP_06901486.1| probable flavodoxin [Clostridium difficile NAP07]
 gi|296259047|gb|EFH05931.1| probable flavodoxin [Clostridium difficile NAP08]
 gi|296431465|gb|EFH17279.1| probable flavodoxin [Clostridium difficile NAP07]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  T+ CI C    CVE+CP++             + C  C  C   CP +AI+   +  
Sbjct: 185 FHYTDKCIGC--GKCVELCPLNNINLKNKKPV-WKNNCTHCMACICGCPTEAIEYKNKTQ 241

Query: 63  LEL 65
              
Sbjct: 242 NRE 244


>gi|225026911|ref|ZP_03716103.1| hypothetical protein EUBHAL_01167 [Eubacterium hallii DSM 3353]
 gi|224955756|gb|EEG36965.1| hypothetical protein EUBHAL_01167 [Eubacterium hallii DSM 3353]
          Length = 575

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  ENC+ CK   C+ + CP       +    I    C+ CGVC+  C  DA++
Sbjct: 525 VEKENCVGCK--SCMRLGCP--AISVKDKKAVIDTTLCVGCGVCQQLCKFDALQ 574


>gi|222054159|ref|YP_002536521.1| Indolepyruvate ferredoxin oxidoreductase [Geobacter sp. FRC-32]
 gi|221563448|gb|ACM19420.1| Indolepyruvate ferredoxin oxidoreductase [Geobacter sp. FRC-32]
          Length = 602

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V   C  C+       CP   + E    + +    C  C VC   CP  +I  + +P
Sbjct: 546 VEATCTGCRVCTSQFECPALIYDEATKKVRVDLLICSGCAVCLDVCPSRSITREEKP 602


>gi|149925754|ref|ZP_01914018.1| probable ferredoxin protein [Limnobacter sp. MED105]
 gi|149825871|gb|EDM85079.1| probable ferredoxin protein [Limnobacter sp. MED105]
          Length = 103

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      GE    I P +C +C        C   CPV+ 
Sbjct: 1  MALIITDECINCD--VCEPECPNGAISMGEEIYEIDPGKCTECVGHFDEPQCVVVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNIT 81
          I  D     +   ++  ++    P+ T
Sbjct: 59 IPKD-PAHPDTRQQLLGKFFKLHPDKT 84


>gi|126726681|ref|ZP_01742521.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Rhodobacterales
           bacterium HTCC2150]
 gi|126704010|gb|EBA03103.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Rhodobacterales
           bacterium HTCC2150]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCP+               ECI C +C   C     K D   GL  +L 
Sbjct: 255 CIDC--MACVNVCPMGIDIREGQ-----QMECITCALCIDACDEIMDKIDRPRGLIDYLA 307

Query: 69  INSE 72
           +  E
Sbjct: 308 LADE 311


>gi|117956074|gb|ABK58619.1| resorcinol hydroxylase small subunit [Azoarcus anaerobius]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 2/72 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG-LELW 66
           C  C    CV+       Y+  + +  I P +          CP + I  + E    + W
Sbjct: 69  CNHCDDAPCVKAAGDGSVYKRPDGIVIIDPQKARGRKDIVGACPYNVIFWNEELQLPQKW 128

Query: 67  LKINSEYATQWP 78
           +         W 
Sbjct: 129 IFDAHLLDQGWK 140


>gi|4150870|emb|CAA09813.1| ndhI protein [Hordeum vulgare subsp. vulgare]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP   +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|20808299|ref|NP_623470.1| MinD family protein [Thermoanaerobacter tengcongensis MB4]
 gi|20516902|gb|AAM25074.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C    C E+C  +     E    ++P  C  CG+C  +CPV+AIK   E
Sbjct: 61  AVIDKDKCIEC--GLCEELCRFNAISNFE----VNPYYCEGCGLCMYKCPVEAIKMVEE 113


>gi|325610555|gb|ADZ36496.1| NADH dehydrogenase 18 kDa subunit [Stewartia pseudocamellia]
 gi|325610590|gb|ADZ36526.1| NADH dehydrogenase 18 kDa subunit [Stewartia sinensis]
          Length = 167

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSAYDRHELN 136


>gi|317490478|ref|ZP_07948959.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831434|ref|ZP_08164688.1| thiosulfate reductase electron transport protein phsb family
           protein [Eggerthella sp. HGA1]
 gi|316910416|gb|EFV32044.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486688|gb|EGC89136.1| thiosulfate reductase electron transport protein phsb family
           protein [Eggerthella sp. HGA1]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVD 53
           Y +   C  C++  C+EVCP    Y  E      ++ +ECI C  C   CP +
Sbjct: 52  YWIPLQCQQCENPGCIEVCPTGASYRDEATGVVLVNAEECIGCESCLKGCPYN 104


>gi|288931228|ref|YP_003435288.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
 gi|288893476|gb|ADC65013.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
          Length = 262

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           +TE+C LC    CV+ CP +        + + +  EC  C  C   C  +AI  + 
Sbjct: 167 ITEDCNLC--MKCVDACPRNVLKNDNGKVVVENVLECSMCRDCVRVCEANAILIEE 220


>gi|304316330|ref|YP_003851475.1| electron transport complex, RnfABCDGE type subunit beta
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777832|gb|ADL68391.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 279

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T  CI CK   C   C  D  +  +N   I  ++C+ C  C  +CP D+I P
Sbjct: 216 VCTVGCIGCK--ACERACNYDAVHVIDNLAKIDYEKCVSCMACVEKCPTDSIYP 267



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 11  LCK-HTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C     C ++CP D  +  G+    +  D+C  CG+C   CP + I+   
Sbjct: 145 GCLGLGTCEKLCPFDAIHVIGDGVAVVDEDKCTGCGICVDACPKNIIELVD 195



 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 18/83 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLA--IHPDECIDCGV 45
             V  + C  C    CV+ CP              V C    +      +    CI C  
Sbjct: 169 AVVDEDKCTGC--GICVDACPKNIIELVDANTKTRVICSNTDKGKNVRPVCTVGCIGCKA 226

Query: 46  CEPECPVDAIKPDTEPGLELWLK 68
           CE  C  DA+          + K
Sbjct: 227 CERACNYDAVHVIDNLAKIDYEK 249


>gi|154492651|ref|ZP_02032277.1| hypothetical protein PARMER_02285 [Parabacteroides merdae ATCC
           43184]
 gi|154086956|gb|EDN86001.1| hypothetical protein PARMER_02285 [Parabacteroides merdae ATCC
           43184]
          Length = 501

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 25/121 (20%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP---- 57
             + T  C  C    C   C             I    C+DC  C  +C   AI+     
Sbjct: 217 PVIDTSKCNGC--GLCARNC--KAACINAKVHEIDYSRCVDCMDCIDKCRQGAIRYTRRK 272

Query: 58  ------------DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG----VKQKYE 101
                         +P    +  +++  AT       +K  LP   K+DG    ++ K +
Sbjct: 273 TNKAETQTNQPVVDKPDRRKFFTVSALLATSATLKAQEKVQLPD-KKVDGGLAIIEDKKK 331

Query: 102 K 102
            
Sbjct: 332 P 332



 Score = 37.3 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 16/79 (20%)

Query: 2   TYVVTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEP 48
             ++ ENCI         +C   CP                     ++ ++CI CG CE 
Sbjct: 421 AVLIQENCIVNRDGVTCGNCARHCPTQAILMVAKDPNDPDSPQLPVVNEEKCIGCGACEN 480

Query: 49  EC---PVDAIKPDTEPGLE 64
            C   P  AI  +      
Sbjct: 481 LCPSRPFSAIYVEGHEQHR 499



 Score = 34.2 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 17  CVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  +CPV  F             I   +C  CG+C   C    I        
Sbjct: 196 CNTICPVGTFLGLISRFSVFKPVIDTSKCNGCGLCARNCKAACINAKVHEID 247


>gi|124024945|ref|YP_001014061.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. NATL1A]
 gi|156632623|sp|A2BZY6|NDHI_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|123960013|gb|ABM74796.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 218

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGACIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELSAF 130


>gi|39934300|ref|NP_946576.1| pyruvate ferredoxin/flavodoxin oxidoreductase 4Fe-4S binding
           subunit [Rhodopseudomonas palustris CGA009]
 gi|39648148|emb|CAE26668.1| possible pyruvate ferredoxin/flavodoxin oxidoreductas 4Fe-4S
           binding domain [Rhodopseudomonas palustris CGA009]
          Length = 299

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +T+  C  C+   CV++CP  C     + +   + P++C  C +CE  CP  AI+   + 
Sbjct: 233 ITDAWCKSCE--ICVKLCPERCLKLNADRVVELVAPEKCTGCRLCEWLCPDFAIRVHLDT 290

Query: 62  GLELW 66
                
Sbjct: 291 EAPAM 295


>gi|120600826|ref|YP_965400.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560919|gb|ABM26846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|319428528|gb|ADV56602.1| cytochrome c oxidase accessory protein CcoG [Shewanella
           putrefaciens 200]
          Length = 475

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +     GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMERMGYPLGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|319764056|ref|YP_004127993.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans BC]
 gi|317118617|gb|ADV01106.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans BC]
          Length = 699

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPG 62
           +  + C  C    CV  CP            I    C     C   C V  AI+ D E  
Sbjct: 192 IDLDLCTRCN--ACVAACPEGAIGLD---YQIDMAACTGHRDCVKACAVAGAIRFDREAE 246

Query: 63  LE 64
            +
Sbjct: 247 PQ 248



 Score = 41.1 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV  CP     +      L      C+ CG+CE  CP  AI
Sbjct: 565 VDKDRCTLC--MSCVSACPASALQDNPQAPQLRFIERNCVQCGLCERTCPEGAI 616



 Score = 40.7 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 10  ILCKHTDCVEVCPV--DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           + C    CV++C             + ++P  C+ CG C   CP  A+        ++  
Sbjct: 318 VGCS--ACVDICSAEAIASDPARQQVVVNPHLCVGCGACTTVCPTGAMGYAYPSAQDMGA 375

Query: 68  KINSEYATQ 76
           +I +  AT 
Sbjct: 376 RIRTLLATY 384


>gi|305662634|ref|YP_003858922.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
 gi|304377203|gb|ADM27042.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
          Length = 281

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + C LCK   C+EVCP +     +N + +    ECI C  C   CP  AI  D      
Sbjct: 185 EDLCNLCKK--CIEVCPKNVLTVYQNRIQVKDKYECILCKQCMYACPTKAI--DVSYRDN 240

Query: 65  LWL 67
            ++
Sbjct: 241 EYI 243


>gi|290967991|ref|ZP_06559540.1| ferredoxin [Megasphaera genomosp. type_1 str. 28L]
 gi|290781897|gb|EFD94476.1| ferredoxin [Megasphaera genomosp. type_1 str. 28L]
          Length = 54

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +V+++ C++C    C   CP     EGE+   I  D CIDCG CE  CP  AI  +
Sbjct: 2  HVISDECVMC--GSCAATCPTGAIEEGESKYVI-TDSCIDCGACESVCPTGAISAE 54


>gi|238062219|ref|ZP_04606928.1| NADH-quinone oxidoreductase, I subunit [Micromonospora sp. ATCC
           39149]
 gi|237884030|gb|EEP72858.1| NADH-quinone oxidoreductase, I subunit [Micromonospora sp. ATCC
           39149]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 18/72 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                   +   I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGGDNTEENRLSPGERHASVYQINYARCIFCGLCIEAC 109

Query: 51  PVDAIKPDTEPG 62
           P  ++    E  
Sbjct: 110 PTRSLTMSNEYE 121


>gi|237711984|ref|ZP_04542465.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454679|gb|EEO60400.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 508

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + T  C  C    C   C   C         I    C+ C  C  +C  DAIK  +  
Sbjct: 217 PVIDTSKCNGC--GLCARNCKSSC--INPKAHEIDYSRCVACMDCLGKCRQDAIKYVSGA 272

Query: 62  GLELWLKINSE 72
            ++    +  E
Sbjct: 273 IIQKKQVLRRE 283



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 16/76 (21%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPEC- 50
           + +NCI         +C   CP                     ++ + CI CG CE  C 
Sbjct: 431 IAQNCIVNTDKVSCGNCARHCPTGAIQMIPEDENDESSPKIPVVNTERCIGCGACENLCP 490

Query: 51  --PVDAIKPDTEPGLE 64
             P  AI  +      
Sbjct: 491 ARPFSAIYVEGHEMHR 506



 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 17  CVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  +CPV                I   +C  CG+C   C    I P      
Sbjct: 196 CNTICPVGTVLGLLSRYSYFKPVIDTSKCNGCGLCARNCKSSCINPKAHEID 247



 Score = 35.0 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 20/68 (29%), Gaps = 15/68 (22%)

Query: 13  KHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPVDAIKP 57
           K   C EVCP D  +                     CI       CG C   CP  AI+ 
Sbjct: 399 KCAKCAEVCPTDAIHLTSLAEKSAIQIGHAVWIAQNCIVNTDKVSCGNCARHCPTGAIQM 458

Query: 58  DTEPGLEL 65
             E   + 
Sbjct: 459 IPEDENDE 466


>gi|237736717|ref|ZP_04567198.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420579|gb|EEO35626.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Fusobacterium mortiferum ATCC 9817]
          Length = 252

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++V ++CI C    C +VCP            I    C  C  C   CP +AI  
Sbjct: 177 FIVNDSCISC--GICKQVCPTKNIELQNGKP-IFNSNCTHCLACFHWCPKEAIYM 228


>gi|227357618|ref|ZP_03841971.1| possible [formate-C-acetyltransferase]-activating enzyme [Proteus
           mirabilis ATCC 29906]
 gi|227162328|gb|EEI47332.1| possible [formate-C-acetyltransferase]-activating enzyme [Proteus
           mirabilis ATCC 29906]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           + C+ C    CV+VCP    Y      G+    +    +CI C  CE  C  DA+    +
Sbjct: 58  DKCVDC--GKCVDVCPAGVHYMTTNEQGQQVHRVDRAVDCIGCRQCEEVCLSDALDIMGK 115

Query: 61  P 61
            
Sbjct: 116 D 116


>gi|153941079|ref|YP_001391521.1| iron-sulfur binding protein [Clostridium botulinum F str.
           Langeland]
 gi|152936975|gb|ABS42473.1| iron-sulfur binding protein [Clostridium botulinum F str.
           Langeland]
          Length = 288

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  + CI C  T+C  VC  D        L I P  C  CG C   CP +AIK + E   
Sbjct: 62  IDEDICIKC--TECELVCKFDAIKN----LKIDPFLCEWCGACTLICPQNAIKLEDEKTA 115

Query: 64  ELWL 67
           + ++
Sbjct: 116 KTFI 119


>gi|158523142|ref|YP_001531012.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511968|gb|ABW68935.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C LC    C  VCP D     ++ L      C+ C +C   CP +A+    +P 
Sbjct: 232 ACTLC--GACEAVCPFDAIKITDDRLVYDIGACMGCELCVENCPDNALTLYNDPD 284


>gi|158521751|ref|YP_001529621.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510577|gb|ABW67544.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 281

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    CVE CP       E  +      C+ C  C   C   AI     P +E  
Sbjct: 208 DACTQC--GLCVENCPTANITLEEGPVFAD--RCVVCFNCVRVCEPGAISSKVLPFIEAD 263

Query: 67  LKINSEYAT 75
           L    ++  
Sbjct: 264 LHKRLDFFR 272


>gi|150019920|ref|YP_001305274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermosipho melanesiensis BI429]
 gi|149792441|gb|ABR29889.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosipho melanesiensis BI429]
          Length = 97

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M ++   +CI CK   CV VCPV+     + + F  I+ + C  CG+C  +CP +AI+P+
Sbjct: 1  MPWIRESDCIKCKF--CVNVCPVEGAIIMKEDGFPYINNEICTRCGLCMEKCPKNAIRPN 58

Query: 59 TE 60
           E
Sbjct: 59 YE 60


>gi|115604989|ref|YP_784441.1| NADH-plastoquinone oxidoreductase subunit I [Drimys granadensis]
 gi|122164392|sp|Q06GU2|NDHI_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|112032717|gb|ABH88352.1| NADH-plastoquinone oxidoreductase subunit I [Drimys granadensis]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L ++   ++N
Sbjct: 120 SMTEEYELSIYDRHELN 136


>gi|78223034|ref|YP_384781.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78194289|gb|ABB32056.1| Indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           metallireducens GS-15]
          Length = 585

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 4   VVTENCILCKHTDCVEV-CPVD----CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  ++C  CK   C+++ CP           +    I P  C  C VC   C  +AI
Sbjct: 527 IDQDHCTGCK--ACLKIGCPAIEWQPAPDGKKGKAYIDPLLCNGCDVCRQLCKFNAI 581


>gi|20090579|ref|NP_616654.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Methanosarcina acetivorans C2A]
 gi|19915611|gb|AAM05134.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Methanosarcina acetivorans C2A]
          Length = 619

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + TE+C  C    C++   CP      GE    I  D C  CG+C   CP ++I  D
Sbjct: 562 IDTESCTGC--GFCIKQLGCPAIFLPPGEEKPFI-LDSCNGCGLCAQICPSESISED 615


>gi|20094339|ref|NP_614186.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19887398|gb|AAM02116.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 139

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             + C+ C  T C  VCP          + +  +ECI CG C   CPV A++  ++ G  
Sbjct: 81  DEDRCLHC--TACHSVCPTGAIELKGVEVELDDEECIVCGSCTEICPVGALRIASKEGER 138


>gi|167037063|ref|YP_001664641.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115478|ref|YP_004185637.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855897|gb|ABY94305.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928569|gb|ADV79254.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 291

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C    C E+C  D     E    ++P  C  CG+C  +CPV+AIK   E
Sbjct: 61  AVIDKDKCIEC--GLCEELCRFDAISNFE----VNPYYCEGCGLCMYKCPVEAIKLIEE 113


>gi|116750952|ref|YP_847639.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700016|gb|ABK19204.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 950

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 25/79 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECI--- 41
           YV  ++CI C   +C +VCPV+   E                        I    CI   
Sbjct: 31  YVDMDHCISC--GECAKVCPVEVKDEFNEKMSIRKAIYVKYPQAVPLKYQIDGRNCIRVR 88

Query: 42  --DCGVCEPECPVDAIKPD 58
             DCG CE  CP  A++ D
Sbjct: 89  GGDCGGCEKVCPSGAVRFD 107



 Score = 38.4 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 9   CILCKHTDCVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C    C++VCP             G     +    C  CG C+  CP + I      
Sbjct: 870 CDGC--ALCLDVCPYGALQLEEIPGSNGRQHAVVKAARCKGCGACQATCPKEGISVAGFT 927

Query: 62  GLELWLKINSEYAT 75
             ++  ++ +  + 
Sbjct: 928 YRQISAQVKAALSD 941


>gi|332982734|ref|YP_004464175.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Mahella
           australiensis 50-1 BON]
 gi|332700412|gb|AEE97353.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Mahella
           australiensis 50-1 BON]
          Length = 583

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C+ C+   C+ + CP       +    I   +C  CG+C   C  DAIK   
Sbjct: 530 VDMDKCMGCE--ICMHLGCP--AMENDDGAFVIDVTQCNGCGLCSNLCIFDAIKEAD 582


>gi|332701478|ref|ZP_08421566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332551627|gb|EGJ48671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 150

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI C    C E CPVD  Y        +P  CI CG C P CP   ++    P   
Sbjct: 84  ELCIQC--GKCAEACPVDAVYLDAGG---NPFVCIHCGRCVPFCPHTCLEMQDAPHAH 136



 Score = 41.5 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    CV  CP   F +     + +  + CI CG C   CPVDA+  D
Sbjct: 54  CLACDPAPCVLACPTGAFSQRRGGGVVVKRELCIQCGKCAEACPVDAVYLD 104


>gi|326573425|gb|EGE23393.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 101P30B1]
          Length = 275

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ E  CI C  T C+  CPVD      ++  +I  D C  C +C   CPVD I
Sbjct: 112 IIQEADCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163


>gi|326561676|gb|EGE12013.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 103P14B1]
          Length = 275

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ E  CI C  T C+  CPVD      ++  +I  D C  C +C   CPVD I
Sbjct: 112 IIQEADCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163


>gi|319794660|ref|YP_004156300.1| NADH-quinone oxidoreductase, chain i [Variovorax paradoxus EPS]
 gi|315597123|gb|ADU38189.1| NADH-quinone oxidoreductase, chain I [Variovorax paradoxus EPS]
          Length = 181

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 79  EERCIACKL--CEAVCPALAITIESDVRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 136


>gi|315638530|ref|ZP_07893706.1| periplasmic nitrate reductase inner membrane quinol dehydrogenase
           NapH [Campylobacter upsaliensis JV21]
 gi|315481374|gb|EFU72002.1| periplasmic nitrate reductase inner membrane quinol dehydrogenase
           NapH [Campylobacter upsaliensis JV21]
          Length = 263

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 8   NCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C H  CV VCP     +  G    +++  ECI CG C   C  DA+  +     + 
Sbjct: 203 KCTKCYH--CVSVCPEKQVLWMVGRESASVNSGECIRCGRCIDVCNDDALSFNIFDLRKK 260


>gi|306819989|ref|ZP_07453640.1| electron transport complex protein RnfB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552025|gb|EFM39965.1| electron transport complex protein RnfB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 340

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+VCP D      N   IH ++C  C  C  +CP   I
Sbjct: 216 CIGC--QMCVKVCPFDAITFENNLPTIHYEKCKQCNKCVEKCPTKTI 260



 Score = 38.4 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 18/83 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD--------------CFYEGENFLAIHPDE--CIDCGV 45
            +V  + C+ C    C+EVCP                C    +           CI C +
Sbjct: 164 AHVDRDKCVAC--GKCIEVCPKSIIEWIPYNQQVYIYCKSREKGKDVKDKCSVGCIGCQM 221

Query: 46  CEPECPVDAIKPDTEPGLELWLK 68
           C   CP DAI  +       + K
Sbjct: 222 CVKVCPFDAITFENNLPTIHYEK 244



 Score = 36.5 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
           C+      CV  C  D  Y G + +  +  D+C+ CG C   CP   I+ 
Sbjct: 141 CMG--FGTCVRACKFDAIYIGTDGVAHVDRDKCVACGKCIEVCPKSIIEW 188


>gi|290489760|gb|ADD31287.1| NADH-plastoquinone oxidoreductase subunit I protein [Lonicera
           japonica]
          Length = 165

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPIVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L ++   ++N
Sbjct: 120 SMTEEYELSVYDRHELN 136


>gi|284007516|emb|CBA73012.1| Electron transport complex protein rnfB [Arsenophonus nasoniae]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            ++   NCI C  T C++ CPVD           +  D C  C +C   CP D I
Sbjct: 108 AFIDEANCIGC--TKCIQACPVDAIVGTTRALHTVVEDLCTGCDLCVAPCPTDCI 160


>gi|282901490|ref|ZP_06309415.1| Ferredoxin-like protein in nif region protein, fdxN
          [Cylindrospermopsis raciborskii CS-505]
 gi|281193769|gb|EFA68741.1| Ferredoxin-like protein in nif region protein, fdxN
          [Cylindrospermopsis raciborskii CS-505]
          Length = 112

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          M Y +T  CI C    CV  CP     + E    I    C +C       P  
Sbjct: 1  MAYTITSQCISCNL--CVSACPNGAIEKVEGKHIIDAQRCTNCANTIYTVPQC 51


>gi|237741880|ref|ZP_04572361.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 4_1_13]
 gi|229429528|gb|EEO39740.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 4_1_13]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A         
Sbjct: 172 DRCVAC--GACVKKCKKVSVEALKMENNKIVRDANKCIGCGECVINCPMSA----WTRSP 225

Query: 64  ELWLKIN 70
           + + K+ 
Sbjct: 226 KKYYKLM 232


>gi|220933537|ref|YP_002512436.1| adenylylsulfate reductase, beta subunit [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219994847|gb|ACL71449.1| adenylylsulfate reductase, beta subunit [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 160

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
          T+V    C  C    CV++CP D  +          I P+ C +C  C   CP +AI
Sbjct: 3  TFVYMTRCDGC--GACVDICPSDIMHIDPTVRRAYNIEPNMCWECYSCVKACPHNAI 57


>gi|182438078|ref|YP_001825797.1| putative 4Fe-4S cluster-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326778723|ref|ZP_08237988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466594|dbj|BAG21114.1| putative 4Fe-4S cluster-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326659056|gb|EGE43902.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 9   CILCKHT--DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +        CI C  C   CP    K D +  L+
Sbjct: 53  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCSNCVNACPFGVPKIDLQAKLQ 112


>gi|169629228|ref|YP_001702877.1| NADH dehydrogenase subunit I [Mycobacterium abscessus ATCC 19977]
 gi|169241195|emb|CAM62223.1| NADH-quinone oxidoreductase, I subunit NuoI [Mycobacterium
           abscessus]
          Length = 178

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  +                       I+   CI CG+C   C
Sbjct: 56  EKCIGCEL--CAWACPADAIFVEGADNSEEERFSPGERYGRVYQINYLRCIGCGLCIEAC 113

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 114 PTRALTM 120


>gi|227828720|ref|YP_002830500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.14.25]
 gi|227831464|ref|YP_002833244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|229580391|ref|YP_002838791.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.G.57.14]
 gi|229580975|ref|YP_002839374.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.N.15.51]
 gi|229585938|ref|YP_002844440.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.27]
 gi|238620912|ref|YP_002915738.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.4]
 gi|284999004|ref|YP_003420772.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
          islandicus L.D.8.5]
 gi|227457912|gb|ACP36599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|227460516|gb|ACP39202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.14.25]
 gi|228011107|gb|ACP46869.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.G.57.14]
 gi|228011691|gb|ACP47452.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.N.15.51]
 gi|228020988|gb|ACP56395.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.27]
 gi|238381982|gb|ACR43070.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.4]
 gi|284446900|gb|ADB88402.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
          islandicus L.D.8.5]
 gi|323475902|gb|ADX86508.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus REY15A]
 gi|323478522|gb|ADX83760.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus HVE10/4]
          Length = 95

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 4  VVTENCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +    C+ C+        C+ VCP + +   +  + +  + C++CG C   CP   I   
Sbjct: 23 IDPNKCLKCEEVNGVPQPCIAVCPANVYSWIDKRIVVSYENCVECGACRIACPYSNISWK 82

Query: 59 TE 60
            
Sbjct: 83 YP 84


>gi|160899056|ref|YP_001564638.1| RnfABCDGE type electron transport complex subunit B [Delftia
           acidovorans SPH-1]
 gi|160364640|gb|ABX36253.1| electron transport complex, RnfABCDGE type, B subunit [Delftia
           acidovorans SPH-1]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E  CI C  T C++ CP D      +    +    C  C +C P CPVD I
Sbjct: 86  VIDEAWCIGC--TLCIKACPTDAILGANKFMHTVIAAHCTGCELCIPVCPVDCI 137


>gi|118430441|ref|YP_874706.1| NADH-plastoquinone oxidoreductase subunit I [Hordeum vulgare subsp.
           vulgare]
 gi|126302574|sp|O98692|NDHI_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|118201095|gb|ABK79466.1| NADH-plastoquinone oxidoreductase subunit I [Hordeum vulgare subsp.
           vulgare]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP   +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|91978473|ref|YP_571132.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Rhodopseudomonas
           palustris BisB5]
 gi|91684929|gb|ABE41231.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Rhodopseudomonas
           palustris BisB5]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           +T+  C  C+   CV++CP  C       +     P++C  C +CE  CP  AI+   + 
Sbjct: 249 ITDAWCKSCE--ICVKLCPERCLTLNAERIVEMTAPEKCTGCRLCEWLCPDFAIRVHLDA 306

Query: 62  GLELWLKI 69
                  +
Sbjct: 307 EQPAMEAV 314


>gi|91203927|emb|CAJ71580.1| strongly similar to NADH dehydrogenase I subunit I [Candidatus
           Kuenenia stuttgartiensis]
          Length = 139

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC----------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C +VCP  C          F    +   +    CI CG CE  CP  AI
Sbjct: 52  EKCVAC--GLCAKVCPSQCISIEGAEDEQFRRYPSMYELDSFRCIFCGFCEEACPERAI 108


>gi|15643162|ref|NP_228206.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|148269662|ref|YP_001244122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga petrophila RKU-1]
 gi|4980900|gb|AAD35481.1|AE001719_7 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|147735206|gb|ABQ46546.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga
           petrophila RKU-1]
          Length = 152

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C++ C     +       + ++ ++C+ C +C   CP   I+ +T+  
Sbjct: 64  CRNCDDPSCLKACMTGAMHRDPKTGAIRVNQEKCVGCWMCVMACPFGVIRRNTKEK 119


>gi|326202709|ref|ZP_08192577.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           [Clostridium papyrosolvens DSM 2782]
 gi|325987293|gb|EGD48121.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           [Clostridium papyrosolvens DSM 2782]
          Length = 414

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           Y+    C+ C    C++ CPVDC          I   +C  CG C   C   AI
Sbjct: 340 YINAAKCVGC--GICIKSCPVDCIEGLPGYIHMIEDIDCTKCGKCIEVCEAGAI 391


>gi|319638825|ref|ZP_07993583.1| NADH-quinone oxidoreductase subunit I [Neisseria mucosa C102]
 gi|317399729|gb|EFV80392.1| NADH-quinone oxidoreductase subunit I [Neisseria mucosa C102]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 57  EERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 114


>gi|291519334|emb|CBK74555.1| electron transport complex, RnfABCDGE type, B subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 263

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C +VC  D  +    F  I  D+C  CG C   CP   I
Sbjct: 218 CIGC--HKCEKVCESDAIHVDGFFAHIDQDKCTSCGKCAEACPRHII 262



 Score = 38.4 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+      CV+ CP D  +  +    +  + C  CG C   CP   I
Sbjct: 144 CMG--FGSCVKACPFDAIHIIDGVALVDKEACKACGKCVAVCPNHLI 188



 Score = 34.6 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 18/73 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP----------------VDCFYEGENFLAIHPDECIDCGV 45
             V  E C  C    CV VCP                     +G++ +A+    CI C  
Sbjct: 166 ALVDKEACKAC--GKCVAVCPNHLIELIPYDFGHAVRCHNNDKGKDVMAVCSVGCIGCHK 223

Query: 46  CEPECPVDAIKPD 58
           CE  C  DAI  D
Sbjct: 224 CEKVCESDAIHVD 236


>gi|289578863|ref|YP_003477490.1| cobyrinic acid ac-diamide synthase [Thermoanaerobacter italicus
           Ab9]
 gi|297545078|ref|YP_003677380.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528576|gb|ADD02928.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter italicus
           Ab9]
 gi|296842853|gb|ADH61369.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 291

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + CI C    C E+C        E    ++P  C  CG+C  +CPV+AIK   E
Sbjct: 61  AVIDKDKCIEC--GLCEELCRFGAISNFE----VNPYYCEGCGLCMYKCPVEAIKLVEE 113


>gi|229826705|ref|ZP_04452774.1| hypothetical protein GCWU000182_02081 [Abiotrophia defectiva ATCC
           49176]
 gi|229789575|gb|EEP25689.1| hypothetical protein GCWU000182_02081 [Abiotrophia defectiva ATCC
           49176]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 1   MTYV-------VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           M+Y          E CI C    C  VCP+D      +    +  ECI C  C+  CP D
Sbjct: 253 MSYFSIVRVKCDKEKCISC--GKCKRVCPMDVDMTDNSRKRKNGTECILCFECKKACPKD 310

Query: 54  AI 55
           A+
Sbjct: 311 AL 312


>gi|255280016|ref|ZP_05344571.1| electron transport complex, RnfABCDGE type, B subunit [Bryantella
           formatexigens DSM 14469]
 gi|255269107|gb|EET62312.1| electron transport complex, RnfABCDGE type, B subunit [Bryantella
           formatexigens DSM 14469]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 10  ILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             CK    CV VC  D  +       +   +C+ CG C   CP   I    E   
Sbjct: 142 KGCKGFGSCVSVCKFDAIHVVNGIAVVDSSKCMGCGKCAATCPNGLIVMIPEDAQ 196



 Score = 37.3 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C + C         N   I  ++C  CG C  +CP   I
Sbjct: 218 CIGC--TLCTKQCEFGAITMNGNVAVIDQEKCQACGKCAEKCPSKII 262


>gi|212692633|ref|ZP_03300761.1| hypothetical protein BACDOR_02130 [Bacteroides dorei DSM 17855]
 gi|237709058|ref|ZP_04539539.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724459|ref|ZP_04554940.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752581|ref|ZP_06088150.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212664918|gb|EEB25490.1| hypothetical protein BACDOR_02130 [Bacteroides dorei DSM 17855]
 gi|229437328|gb|EEO47405.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456754|gb|EEO62475.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263235767|gb|EEZ21262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V TE C  C   +C+EVCP        E  +     +CI C  C  ECP  A   DT   
Sbjct: 185 VCTEECFAC--GECIEVCPTHAIALSDEGKIETEITKCIKCCACVKECPNGARVFDTPYT 242

Query: 63  LE 64
             
Sbjct: 243 PM 244


>gi|167718713|ref|ZP_02401949.1| ferredoxin [Burkholderia pseudomallei DM98]
 gi|167814883|ref|ZP_02446563.1| ferredoxin [Burkholderia pseudomallei 91]
          Length = 165

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|167623339|ref|YP_001673633.1| hydrogenase, Fe-only [Shewanella halifaxensis HAW-EB4]
 gi|167353361|gb|ABZ75974.1| hydrogenase, Fe-only [Shewanella halifaxensis HAW-EB4]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C  C    C + CP +        +  I+ ++C+ CG C   CP  AI
Sbjct: 21 KCKGCD--ACQKFCPTNAIEGASGAVHSINKEKCLSCGQCLINCPFGAI 67


>gi|163858985|ref|YP_001633283.1| iron-sulfur cluster-binding protein [Bordetella petrii DSM 12804]
 gi|163262713|emb|CAP45016.1| iron-sulfur cluster-binding protein [Bordetella petrii]
          Length = 698

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           I C    CV+VC  +      +   + + P  C  CG C   CP  A+        +   
Sbjct: 314 IGCN--ACVDVCSAEAIRSDAHRQQIVVDPYLCAGCGACTTVCPSGAMAYTYPRSPDQGR 371

Query: 68  KINSEYATQ 76
           K+ +  +T 
Sbjct: 372 KLRTLLSTY 380



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C LC    CV  CP     +      L      C+ CG+CE  CP DAI+
Sbjct: 564 VDAQACTLC--MSCVSACPAHALQDNPQLPQLRFIEKNCVQCGLCEKTCPEDAIQ 616


>gi|218780381|ref|YP_002431699.1| NAD-dependent epimerase/dehydratase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761765|gb|ACL04231.1| NAD-dependent epimerase/dehydratase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 587

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           MT  +T++C  C    C++ C  D             D C  CG C   CP+ A+ 
Sbjct: 512 MT--ITDDCNGC--GVCLDTCGFDAIKIENGKAV-QTDACRGCGRCATYCPLGAVH 562


>gi|150003844|ref|YP_001298588.1| putative ferredoxin [Bacteroides vulgatus ATCC 8482]
 gi|254880931|ref|ZP_05253641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639939|ref|ZP_07994666.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_40A]
 gi|149932268|gb|ABR38966.1| putative ferredoxin [Bacteroides vulgatus ATCC 8482]
 gi|254833724|gb|EET14033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388217|gb|EFV69069.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_40A]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V TE C  C   +C+EVCP        E  +     +CI C  C  ECP  A   DT   
Sbjct: 185 VCTEECFAC--GECIEVCPTHAIALSDEGKIETEITKCIKCCACVKECPNGARVFDTPYT 242

Query: 63  LE 64
             
Sbjct: 243 PM 244


>gi|126179023|ref|YP_001046988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125861817|gb|ABN57006.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 263

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + VTE C  C    C  +CP +     +     +   C  C  C   CP  AI+
Sbjct: 188 FTVTEECTSC--GICASICPAENIEMVDGRPVWN-HRCELCCGCIHLCPAGAIQ 238


>gi|84623478|ref|YP_450850.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367418|dbj|BAE68576.1| ferredoxin II [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 142

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C+  CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 84  AWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 136


>gi|167893415|ref|ZP_02480817.1| ferredoxin [Burkholderia pseudomallei 7894]
          Length = 163

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|332701346|ref|ZP_08421434.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332551495|gb|EGJ48539.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 336

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            T+ C  C    C   CP+    +  +   ++  EC+ C  C   C    +         
Sbjct: 238 DTDTCAGC--GRCSRACPMAIRVQDTSR--VNSPECMGCLSCVQACKGGCLSMSLGRRRM 293

Query: 65  LWL 67
            W+
Sbjct: 294 PWI 296


>gi|323704596|ref|ZP_08116174.1| MinD family protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536058|gb|EGB25831.1| MinD family protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 281

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--------- 57
           + C LC   +C   C      +    + I    C  CG C   CP +AIK          
Sbjct: 66  DKCTLC--GECTRACRFGALTKLIKKILIFDHLCHSCGACYEICPYNAIKEIPKKIGTIR 123

Query: 58  --DTEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
              ++    +  K+N   A+  P I   K+ +    K
Sbjct: 124 VGHSDDIDFIDGKLNIGEASGVPIIKEIKDLIKDTDK 160


>gi|269139048|ref|YP_003295749.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|267984709|gb|ACY84538.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|304558980|gb|ADM41644.1| Electron transport complex protein RnfB [Edwardsiella tarda FL6-60]
          Length = 191

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
             +   NCI C  T C++ CPVD           +  D+C  CG+C P CP   I+
Sbjct: 109 ALIDEANCIGC--TKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCIQ 162


>gi|257064409|ref|YP_003144081.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792062|gb|ACV22732.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 516

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    CI C    C   CP+           +    C  CG C   CP +A K    P  
Sbjct: 420 VDANKCIAC--GTCAGRCPMGAISMDTGVPVVTSYLCRICGQCCYVCPQEARKLANRPID 477

Query: 64  ELWLKI 69
           + ++++
Sbjct: 478 D-FIEL 482


>gi|251789756|ref|YP_003004477.1| RnfABCDGE type electron transport complex subunit B [Dickeya zeae
           Ech1591]
 gi|247538377|gb|ACT06998.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya zeae
           Ech1591]
          Length = 196

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            ++  ENCI C  T C++ CPVD           +  D C  C +C   CP D I
Sbjct: 109 AWIDEENCIGC--TKCIQACPVDAIIGSTRAVHTVIRDLCTGCNLCVAPCPTDCI 161


>gi|239941995|ref|ZP_04693932.1| putative 4Fe-4S cluster-binding protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239988459|ref|ZP_04709123.1| putative 4Fe-4S cluster-binding protein [Streptomyces roseosporus
           NRRL 11379]
 gi|291445444|ref|ZP_06584834.1| 4Fe-4S ferredoxin [Streptomyces roseosporus NRRL 15998]
 gi|291348391|gb|EFE75295.1| 4Fe-4S ferredoxin [Streptomyces roseosporus NRRL 15998]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 9   CILCKHT--DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +        CI C  C   CP    K D +  L+
Sbjct: 52  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCSNCVNACPFGVPKIDLQAKLQ 111


>gi|256830113|ref|YP_003158841.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579289|gb|ACU90425.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 1143

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 24/81 (29%), Gaps = 20/81 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF------------------YEGENFLAIHPDECIDC 43
             V    C+ C    C EVCPV                     +   N   +  D CI C
Sbjct: 110 PLVDPHKCVSC--GKCSEVCPVKVPSEFNAGLTQRSAVYLPVPHAIPNHYVLDLDNCIRC 167

Query: 44  GVCEPECPVDAIKPDTEPGLE 64
             C   CP  AI    E   +
Sbjct: 168 WKCHEACPTGAIDLKFEERAQ 188



 Score = 41.9 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDA 54
            C LC    CV  CP            + +    C  CG C   CP  A
Sbjct: 1075 CSLC--QACVAACPYGARTVDLENELILVDEMLCQGCGACAAVCPNSA 1120


>gi|212702371|ref|ZP_03310499.1| hypothetical protein DESPIG_00384 [Desulfovibrio piger ATCC 29098]
 gi|212674249|gb|EEB34732.1| hypothetical protein DESPIG_00384 [Desulfovibrio piger ATCC 29098]
          Length = 289

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++CI C    C ++C  +     +    I    C  CGVC   CP  AI  
Sbjct: 66  DDCIRC--GQCADLCRFEAVRPHDGGFLIDDH-CEGCGVCVKLCPQQAIDF 113


>gi|254458174|ref|ZP_05071600.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207085010|gb|EDZ62296.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 272

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            ++C  C    C  +CP          + +   P  CI C +C   C  DAI   +   +
Sbjct: 160 EDSCTAC--QMCYRICPTGALTSDIKNSKIDFDPFLCIKCSICHDVCEPDAITLSSSYNV 217

Query: 64  ELWLK 68
           + + +
Sbjct: 218 KEFFE 222


>gi|152991558|ref|YP_001357280.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
 gi|151423419|dbj|BAF70923.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  C+  CP D     E +  + +  D C     C   CP   I  
Sbjct: 139 CNHCSNPGCLSACPRDAIFKREEDGVVLVDLDRCQGYRYCIAGCPYKKIYF 189


>gi|30061068|gb|AAP19908.1| nitrite reductase [Haemophilus influenzae]
 gi|30061076|gb|AAP19912.1| nitrite reductase [Haemophilus influenzae]
 gi|30061080|gb|AAP19914.1| nitrite reductase [Haemophilus influenzae]
 gi|30061082|gb|AAP19915.1| nitrite reductase [Haemophilus influenzae]
 gi|30061088|gb|AAP19918.1| nitrite reductase [Haemophilus influenzae]
 gi|30061092|gb|AAP19920.1| nitrite reductase [Haemophilus influenzae]
 gi|30061094|gb|AAP19921.1| nitrite reductase [Haemophilus influenzae]
 gi|30061098|gb|AAP19923.1| nitrite reductase [Haemophilus influenzae]
 gi|30061102|gb|AAP19925.1| nitrite reductase [Haemophilus influenzae]
          Length = 135

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
          ++C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 38 QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPYR 86


>gi|14017627|ref|NP_114312.1| NADH dehydrogenase subunit I [Triticum aestivum]
 gi|17380134|sp|P05312|NDHI_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|13928260|dbj|BAB47089.1| NADH dehydrogenase 18kDa subunit [Triticum aestivum]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP   +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|304314561|ref|YP_003849708.1| energy-converting hydrogenase A, subunit Q [Methanothermobacter
          marburgensis str. Marburg]
 gi|302588020|gb|ADL58395.1| energy-converting hydrogenase A, subunit Q [Methanothermobacter
          marburgensis str. Marburg]
          Length = 407

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + C  C    C E CP D             EN   I+P  C  CG C   C   AI 
Sbjct: 12 IDDRCFGCVL--CREACPYDAIRMKTILGEPVRENVPVINPRICRGCGACVSACRTGAIH 69



 Score = 38.8 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E CI C    CV  CPV              D C+ CG C   CPVDA+
Sbjct: 269 VLEERCIGC--GLCVTECPVGVIEPVTPAPVEIKDGCVFCGRCRGVCPVDAV 318



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  C     +     +      I  D+C+ CG C   CP +AIK 
Sbjct: 53  CRGC--GACVSACRTGAIHLTSSGKTGVHSEIDEDKCVRCGYCARACPTEAIKY 104



 Score = 38.0 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECP 51
           +  + C+ C +  C   CP +    GE           + ++  +CI C  C   CP
Sbjct: 82  IDEDKCVRCGY--CARACPTEAIKYGEILPRSVVGGKAVVVNQRDCIGCMTCTRVCP 136



 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CPVD        + +  D CI CG C+  CPV A+K + E  
Sbjct: 354 CQRC--GVCVNHCPVDAMAMDGE-VEVDDDTCILCGECQDICPVTAVKLNLEDD 404



 Score = 36.5 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 2   TYVVTEN-CILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             VV +  CI C    C  VCP        +      I P  C  C  C   CP  AIK 
Sbjct: 117 AVVVNQRDCIGC--MTCTRVCPSRGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAIKY 174

Query: 58  DT-EPGLELWLKIN 70
            + +   E + K+N
Sbjct: 175 SSRKRAYENFSKLN 188


>gi|298370606|ref|ZP_06981921.1| ferredoxin [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281216|gb|EFI22706.1| ferredoxin [Neisseria sp. oral taxon 014 str. F0314]
          Length = 83

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCD--VCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 ILID-EEHPETHEELMAKY 76


>gi|307729066|ref|YP_003906290.1| electron transport complex, RnfABCDGE type subunit B [Burkholderia
           sp. CCGE1003]
 gi|307583601|gb|ADN56999.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1003]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +  + CI C  T C++ CPVD      ++   +  + C  C +C P CPVD I  
Sbjct: 82  AVIDEQICIGC--TLCMQACPVDAIVGAPKHMHTVVAELCTGCDLCVPPCPVDCISM 136


>gi|260170367|ref|ZP_05756779.1| flavodoxin [Bacteroides sp. D2]
 gi|315918726|ref|ZP_07914966.1| flavodoxin [Bacteroides sp. D2]
 gi|313692601|gb|EFS29436.1| flavodoxin [Bacteroides sp. D2]
          Length = 267

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  CI C    C++ CP++ F   +N    L +    CI CG CE ECP DA+  + 
Sbjct: 188 TSRCIAC--GKCMKSCPMNVFTLKDNAKTPLPVDEMNCIMCGKCEKECPADAVFINE 242


>gi|239908592|ref|YP_002955334.1| ferredoxin [Desulfovibrio magneticus RS-1]
 gi|239798459|dbj|BAH77448.1| ferredoxin [Desulfovibrio magneticus RS-1]
          Length = 62

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
          V T+ CI     +CV+VCPV+ +   +     ++ +EC+ C  C   C   AI  + 
Sbjct: 7  VDTQKCIG--DGECVDVCPVEVYEMRDGKAVAVNMEECLGCESCVEVCDQKAIIVEE 61


>gi|297565434|ref|YP_003684406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849883|gb|ADH62898.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 11 LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C    C +VCP          + I    C  CG+C   CP  A++ 
Sbjct: 35 GCD--RCQQVCPHGAIRLENFTVEIDEALCTGCGLCTQVCPGVALEF 79



 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 11/73 (15%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA---------IHPDECIDCGVCEPECPVDAI 55
           V E C LC    C  VCP          +          ++   C  CG C   CP   I
Sbjct: 240 VAEGCTLC--PVCTNVCPTGAVERIREGVEGLSEEYVLKLNVSACTGCGACVNSCPPQVI 297

Query: 56  KPDTEPGLELWLK 68
             +     E++ +
Sbjct: 298 TLEEAGPAEIFGE 310


>gi|227831526|ref|YP_002833306.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus L.S.2.15]
 gi|227457974|gb|ACP36661.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus L.S.2.15]
          Length = 94

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V    CI CK   C   CP          + +  + C  CGVC   CPV AI    E
Sbjct: 37 PVVDYNKCIGCK--VCFIFCPESTIVPSNGKVRVDYEYCKGCGVCANVCPVKAISMVNE 93


>gi|167752846|ref|ZP_02424973.1| hypothetical protein ALIPUT_01107 [Alistipes putredinis DSM
          17216]
 gi|167659915|gb|EDS04045.1| hypothetical protein ALIPUT_01107 [Alistipes putredinis DSM
          17216]
          Length = 56

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +  + C+ C    C++ CPV+    G+    I PD+CIDCG C   CP +AIKP+
Sbjct: 1  MAYKISPDLCVAC--GTCIDECPVEAISAGDV-YVIDPDKCIDCGTCAGVCPSEAIKPE 56


>gi|123471862|ref|XP_001319128.1| dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121901904|gb|EAY06905.1| dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
          Length = 365

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  E C+ C    CV  C  +     +        +C  CG+C   CP  AI
Sbjct: 312 IAAEKCVGC--GTCVTSCLYEALQLEDGIAKCDGAKCFRCGLCYTRCPTCAI 361


>gi|116071525|ref|ZP_01468793.1| NADH dehydrogenase subunit I [Synechococcus sp. BL107]
 gi|116065148|gb|EAU70906.1| NADH dehydrogenase subunit I [Synechococcus sp. BL107]
          Length = 210

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|92115052|ref|YP_574980.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter
          salexigens DSM 3043]
 gi|91798142|gb|ABE60281.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
          salexigens DSM 3043]
          Length = 82

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISPGEEIYVIDPNLCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPDTE 60
          I  D E
Sbjct: 59 IPLDPE 64


>gi|34498747|ref|NP_902962.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34104598|gb|AAQ60956.1| Electron transport complex protein [Chromobacterium violaceum ATCC
           12472]
          Length = 257

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  ++CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I
Sbjct: 79  AVIREDSCIGC--TLCIQACPVDAIVGAAKQMHTVIADECTGCELCLAPCPVDCI 131


>gi|51244101|ref|YP_063985.1| iron-sulfur proteins [Desulfotalea psychrophila LSv54]
 gi|50875138|emb|CAG34978.1| related to iron-sulfur proteins [Desulfotalea psychrophila LSv54]
          Length = 261

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V +  C  C+   C  VCP       E  +     +CI C  C   CP  AI        
Sbjct: 184 VDSTLCNFCE--TCTSVCPAGIISAVEGKILFEAGDCIRCCACIKSCPTSAISFAVPALA 241

Query: 64  ELWLKINSEYATQWPNITTKKES 86
           EL LK+         N  T+KE 
Sbjct: 242 ELALKL-------HNNCRTRKEP 257


>gi|308048640|ref|YP_003912206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307630830|gb|ADN75132.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 214

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +V + C  C    C+ VCP       E      +    C+ CG C   CP   I  D
Sbjct: 111 IVPQTCRQCD--VCMTVCPQQAISVNETTGARVVDESLCVGCGYCADHCPQQVITID 165


>gi|304382390|ref|ZP_07364890.1| ferredoxin [Prevotella marshii DSM 16973]
 gi|304336452|gb|EFM02688.1| ferredoxin [Prevotella marshii DSM 16973]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E CI C    C  VCP+      +GE  +  H D+CI C  C   CPV AI  
Sbjct: 190 VNNERCIRC--GRCATVCPMQNITGGKGEKPIWHHTDDCISCFACYHGCPVHAIDY 243


>gi|284006928|emb|CBA72199.1| hydrogenase-4 component H [Arsenophonus nasoniae]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            + CI C    CV  CP +         +G+ F  ++   CI CG CE  CP  AI+   
Sbjct: 37  PQQCIGC--GACVNACPSNALTAEIDLPKGQLFWQLNLGRCIFCGRCEEVCPTAAIRLSQ 94

Query: 60  EPGLELWLK 68
           E  L +W K
Sbjct: 95  EYELAVWRK 103


>gi|260910260|ref|ZP_05916937.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260635764|gb|EEX53777.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 55

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C+  CPV+   EG+    I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIAC--GTCLPECPVEAISEGD-IYKIDADACTECGTCASVCPSEAI 52


>gi|150005462|ref|YP_001300206.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|149933886|gb|ABR40584.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482]
          Length = 427

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 5  VTEN--CILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECP 51
          +T+   C  C    CV+ CP  C       EG  +  +   +CIDCG+CE  CP
Sbjct: 4  ITDKQSCCGCS--SCVQKCPRQCISLHEDTEGFLYPVVDKGDCIDCGLCEKVCP 55


>gi|114706714|ref|ZP_01439614.1| putative ferredoxin [Fulvimarina pelagi HTCC2506]
 gi|114537662|gb|EAU40786.1| putative ferredoxin [Fulvimarina pelagi HTCC2506]
          Length = 679

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           +V    C LC    CV  CPVD      +   +   E  C+ CG+C   CP +AI  +
Sbjct: 515 HVDKNACTLC--MACVSACPVDALRANPDKPQLRFVESACVQCGICSATCPENAITLE 570



 Score = 41.1 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             C  T C++VCP        + + I    C  CG C   CP  A+  
Sbjct: 283 TGC--TKCIDVCPPGAITPAGDEVLIDTAICGGCGNCAAHCPTGAVSY 328


>gi|24376209|ref|NP_720253.1| iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
 gi|24351266|gb|AAN57696.1|AE015906_3 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 475

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +     GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMERMGYPLGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|30248970|ref|NP_841040.1| 3Fe-4S ferredoxin [Nitrosomonas europaea ATCC 19718]
 gi|30138587|emb|CAD84878.1| 3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
          [Nitrosomonas europaea ATCC 19718]
          Length = 89

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE    I  D C +C        C   CPV  
Sbjct: 1  MALIITDECINCD--VCEPECPNRAISQGEEIYEIDSDLCTECVGHYNTPQCVEVCPVSC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D    +E   ++  +Y
Sbjct: 59 IVGD-PDRVENREQLMEKY 76


>gi|150018760|ref|YP_001311014.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149905225|gb|ABR36058.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 271

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C+ C    C  VCP       EN  +AIHPD CI CG C   CP  +I     P
Sbjct: 11 CVKC--GLCSNVCPSGVLSMNENGPIAIHPDNCISCGHCVAICPSSSIDNIKTP 62


>gi|113971582|ref|YP_735375.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
 gi|113886266|gb|ABI40318.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C  C    C + CP          +  I  D+C+ CG C   CP  AI
Sbjct: 21 KCKGCD--ACKQFCPTHAINGASGAVHSIDEDKCLSCGQCLINCPFSAI 67


>gi|116619629|ref|YP_821785.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116222791|gb|ABJ81500.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 999

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
            C+ C++  C  VCPV         L  +  + C+    C   CP  
Sbjct: 829 PCMQCENAPCELVCPVQATSHSSEGLNDMVYNRCVGTKYCSNNCPYK 875


>gi|317484168|ref|ZP_07943097.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316924517|gb|EFV45674.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 562

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 8   NCILCKHT----DCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C+ C H      CVE CP       ++     +P +C  CG C   CP  +I     
Sbjct: 500 RCMHCGHCMECGSCVESCPGHILEMTDDGPAVAYPSQCWHCGCCRIACPTGSIAYRFP 557


>gi|312879036|ref|ZP_07738836.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310782327|gb|EFQ22725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 450

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V + CI C    C   CPV     G   +     EC+ CG C   CP
Sbjct: 213 VPDRCIRC--GACDRACPVGLEPLGTERVR--SGECLACGRCVCACP 255


>gi|304390114|ref|ZP_07372068.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326596|gb|EFL93840.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 18/75 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 98  EKCVGCEL--CAWACPADAIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEAC 155

Query: 51  PVDAIKPDTEPGLEL 65
           P  A+    +  +  
Sbjct: 156 PTRALTMSNDYEIWD 170


>gi|300813869|ref|ZP_07094174.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512056|gb|EFK39251.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 310

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI CK   C + C +D     +     + +ECI CGVC   CPV+AI+ 
Sbjct: 242 DKCIGCKK--CYKACKMDVDVCKDP----NHNECIRCGVCINVCPVEAIEF 286


>gi|296133441|ref|YP_003640688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296032019|gb|ADG82787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 166

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C+   CV+ C      +      +    D C+ C +C   CP  A+  D
Sbjct: 59  CRHCEEPACVQACMAGALKKDAGTGVVIHDADRCVGCWMCVMTCPFGALGQD 110


>gi|288961336|ref|YP_003451675.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510]
 gi|288913644|dbj|BAI75131.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510]
          Length = 158

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  CK   CV VC     +       + +  D+CI C +C   CP      D
Sbjct: 47  FSVPMMCQQCKDAACVTVCMPRAMHRNPANGQVELDADKCIGCKMCVQACPFGCASWD 104



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTE 60
             + CI CK   CV+ CP  C       L I     C     C   CP  A++   +
Sbjct: 82  DADKCIGCKM--CVQACPFGCASWDFQGLQILKCDTCDGSPSCAAICPTHALEWVED 136


>gi|269215453|ref|ZP_06159307.1| putative polyferredoxin [Slackia exigua ATCC 700122]
 gi|269130940|gb|EEZ62015.1| putative polyferredoxin [Slackia exigua ATCC 700122]
          Length = 349

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            CI  ++ DCV+VC             L   P  CI CG C   C + AI  +T
Sbjct: 281 ACI--ENHDCVKVCATGARSISPETGDLDFDPKYCIGCGACVNACAMGAISLET 332


>gi|255528469|ref|ZP_05395260.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255507835|gb|EET84284.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V   CI C    C E CP     + EN + I  ++C DC  C   CP  AI  ++    +
Sbjct: 190 VNNFCIGC--GICEETCPA-ANIKLENSIPIWSNKCEDCMACVQHCPKKAIYFNSRTINK 246

Query: 65  L-WLKINSEY 73
             ++  N + 
Sbjct: 247 KRYINPNIKL 256


>gi|212703947|ref|ZP_03312075.1| hypothetical protein DESPIG_02000 [Desulfovibrio piger ATCC 29098]
 gi|212672650|gb|EEB33133.1| hypothetical protein DESPIG_02000 [Desulfovibrio piger ATCC 29098]
          Length = 310

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           +C+     DCV+VCP D     +  + +    C  CG+C   CP
Sbjct: 139 SCMG--FGDCVQVCPFDAMQVKDGVVRVDMSRCTGCGMCVSACP 180



 Score = 36.5 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 7/50 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECPVD 53
           CI C    C + CP          + +   +C+  G      C   C   
Sbjct: 214 CINC--GRCAKACPAKAVSNVAGRMVVDQIKCVSYGPDCGEACVEACARH 261


>gi|139389152|ref|YP_001123869.1| NADH dehydrogenase subunit I [Nasturtium officinale]
 gi|156632617|sp|A4QLY9|NDHI_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134287075|dbj|BAF50694.1| NADH dehydrogenase subunit [Nasturtium officinale]
          Length = 167

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small
          subunit (chain G) [Candidatus Kuenenia stuttgartiensis]
          Length = 262

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAI 55
          + +E C  C    CVE CP + +      G+ +L +   +C+ CG+CE  CP  AI
Sbjct: 35 IDSEKCKACN--VCVETCPTNAYTWIEEQGKRYLQLSHAKCVFCGMCEEVCPYKAI 88


>gi|40846364|gb|AAR92472.1| nitrite oxidoreductase beta subunit [Nitrobacter sp. NRB5220]
          Length = 513

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+   ++ + +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDSVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|91208952|ref|YP_538986.1| NADH dehydrogenase subunit I [Gossypium hirsutum]
 gi|119368553|ref|YP_913240.1| NADH dehydrogenase 18kD subunit [Gossypium barbadense]
 gi|110287698|sp|Q2L959|NDHI_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|125952732|sp|A0ZZ89|NDHI_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|85687466|gb|ABC73678.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium hirsutum]
 gi|119224915|dbj|BAF41301.1| NADH dehydrogenase 18kD subunit [Gossypium barbadense]
          Length = 167

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|48477627|ref|YP_023333.1| putative ATPase RIL [Picrophilus torridus DSM 9790]
 gi|48430275|gb|AAT43140.1| RNase L inhibitor homolog, predicted ATPase [Picrophilus torridus
          DSM 9790]
          Length = 588

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 7  ENC--ILCKHTDCVEVCP-------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C    C H +C   CP          F + +    I  + CI CG+C   CP +AIK 
Sbjct: 9  DRCHPKKCNH-ECRYYCPPVRSGSKTIEFPDVDAQPVITENLCIGCGICVRRCPFNAIKI 67

Query: 58 DTEPGLELWLKINSE 72
           T P      ++N +
Sbjct: 68 VTIPD-----ELNKK 77



 Score = 35.7 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 4  VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          V+TEN CI C    CV  CP +          ++       G+      
Sbjct: 44 VITENLCIGC--GICVRRCPFNAIKIVTIPDELNKKILHQYGLDTFRLY 90


>gi|86152229|ref|ZP_01070440.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88596340|ref|ZP_01099577.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|315124982|ref|YP_004066986.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840718|gb|EAQ57969.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88191181|gb|EAQ95153.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284926766|gb|ADC29118.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315018704|gb|ADT66797.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICISNCIRMETSLDENGRKKVENYSINLGRCIYCGFCAEVCPELAI 137

Query: 56  KPDTEPG 62
              TE  
Sbjct: 138 VHGTEYE 144


>gi|317154953|ref|YP_004123001.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316945204|gb|ADU64255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 144

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CPVD  +       ++P  CI CG C   CP D ++ +  P  + 
Sbjct: 86  CIRC--GQCAKACPVDAIFLD---HMVNPYVCIHCGRCVEFCPHDCLEMEDLPRADK 137



 Score = 40.4 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPD 58
           C+ C    C   CP     +  +   I   + CI CG C   CPVDAI  D
Sbjct: 54  CLACNPAPCAGACPTGSLTQRRDGGVIQKKNLCIRCGQCAKACPVDAIFLD 104


>gi|296136307|ref|YP_003643549.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas
           intermedia K12]
 gi|295796429|gb|ADG31219.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas
           intermedia K12]
          Length = 210

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +    CI C  T C++ CPVD      +    +  D C  C +C P CPVD I+ +
Sbjct: 81  AVIDPALCIGC--TLCIQACPVDAIAGVSKRMHTVIDDWCTGCALCLPPCPVDCIRME 136


>gi|227825043|ref|ZP_03989875.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21]
 gi|226905542|gb|EEH91460.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    C+ C    CV +CPV     G +        C  C  C   CP  AI
Sbjct: 176 VDAARCVKC--GLCVRLCPVGNLSLGMD-AVHMGKTCTYCLACLHACPKQAI 224


>gi|188577211|ref|YP_001914140.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521663|gb|ACD59608.1| ferredoxin II [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 142

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C+  CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 84  AWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 136


>gi|170288337|ref|YP_001738575.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga sp. RQ2]
 gi|281411628|ref|YP_003345707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
 gi|170175840|gb|ACB08892.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           sp. RQ2]
 gi|281372731|gb|ADA66293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
          Length = 151

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C++ C     +       + ++ ++C+ C +C   CP   I+ +T+  
Sbjct: 63  CRNCDDPSCLKACMTGAMHRDPKTGAIRVNQEKCVGCWMCVMACPFGVIRRNTKEK 118


>gi|168179353|ref|ZP_02614017.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
          2916]
 gi|226950350|ref|YP_002805441.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2
          str. Kyoto]
 gi|182669757|gb|EDT81733.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
          2916]
 gi|226843185|gb|ACO85851.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2
          str. Kyoto]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  E C  C    CV  C        +     I  + C   G C PECP  AIK      
Sbjct: 8  IDKEKCNGC--GLCVTACHEGAIELIDGKAVLISDEYCDGLGDCLPECPTGAIKIVEREA 65

Query: 63 LELWLKINSEYATQWPNITTKKESLP 88
           E   ++  +       +   KE +P
Sbjct: 66 AEYNEELVEKRMAMKKPVEENKEKMP 91


>gi|139387309|ref|YP_001123429.1| NADH dehydrogenase subunit I [Capsella bursa-pastoris]
 gi|156632608|sp|A4QKP9|NDHI_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286630|dbj|BAF50254.1| NADH dehydrogenase subunit [Capsella bursa-pastoris]
          Length = 172

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|119899390|ref|YP_934603.1| putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Azoarcus sp. BH72]
 gi|119671803|emb|CAL95717.1| putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Azoarcus sp. BH72]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP          L     ECI C  C   C     K +   GL  +  
Sbjct: 263 CIDCSM--CVQVCPTGIDIRNGLQL-----ECIGCAACIDACDQVMDKMNYPRGLIRYST 315

Query: 69  INS 71
            N+
Sbjct: 316 ENA 318


>gi|78224233|ref|YP_385980.1| hypothetical protein Gmet_3040 [Geobacter metallireducens GS-15]
 gi|78195488|gb|ABB33255.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 376

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E C LC    C + CP       +  LA     CI C  C   CP  A+
Sbjct: 314 PEACTLC--GICRDACPPGAITIQDGKLAFDYHACIRCFCCRELCPEGAL 361


>gi|116749279|ref|YP_845966.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans
          MPOB]
 gi|116698343|gb|ABK17531.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans
          MPOB]
          Length = 572

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELW 66
          C  C    C+  CPV          A+ P  C+ CG C   CP  A  ++ D E   +L 
Sbjct: 15 CQDCFK--CIRECPVKAIKVENACAAVIPQLCVLCGHCVEVCPNGAKHVRDDLEQARQLL 72

Query: 67 LKINSEYATQWPN-ITTKKESLPSA 90
           + +  +A+  P+ ++   +  PSA
Sbjct: 73 KEKDQVFASLAPSFVSEFPDIPPSA 97


>gi|116748056|ref|YP_844743.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697120|gb|ABK16308.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 252

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 8   NCILCKHT---DCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C+ C       C  VCPV+     E    +      CI C  C   CP  A   + 
Sbjct: 76  PCMHCDAPHHSPCTFVCPVNATTRDERNGLVTHIYPRCIGCRYCMVACPYHARDFNW 132


>gi|269468926|gb|EEZ80510.1| electron transport complex protein RnfB [uncultured SUP05 cluster
           bacterium]
          Length = 147

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V  + CI C  T C++ CPVD F    +    +  DEC  C +C P CPVD I 
Sbjct: 74  FVDEQICIGC--TLCIQACPVDAFVGASKVMTTVIADECTGCDLCIPVCPVDCIH 126



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           MT V+ + C  C    C+ VCPVDC +  E    ++  
Sbjct: 102 MTTVIADECTGCDL--CIPVCPVDCIHVLEVQPTLNTY 137


>gi|257464067|ref|ZP_05628451.1| hypothetical protein FuD12_09476 [Fusobacterium sp. D12]
 gi|317061588|ref|ZP_07926073.1| iron-sulfur cluster-binding protein [Fusobacterium sp. D12]
 gi|313687264|gb|EFS24099.1| iron-sulfur cluster-binding protein [Fusobacterium sp. D12]
          Length = 271

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            E C  CK   C +VCP+         +   P  CI C  C  +CP DA   + E  L  
Sbjct: 198 NERCTDCK--ICAKVCPMGSISFEN--VREIPGICIKCCACIKKCPEDAKYYEDEGYLYH 253

Query: 66  WLKINSEY 73
             ++  EY
Sbjct: 254 QHELEEEY 261


>gi|261366842|ref|ZP_05979725.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
 gi|282570942|gb|EFB76477.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
          Length = 258

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T+ C  C    C   CPV   ++ +    +    CI C  C   CP  A
Sbjct: 184 TKACNRC--GVCAAECPVQAIHKEDPT-KVDEKACISCMRCVAVCPQGA 229


>gi|222873278|gb|EEF10409.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E  CI C  T C++ CP D      +    +    C  C +C P CPVD I
Sbjct: 86  VIDEAWCIGC--TLCIKACPTDAILGANKFMHTVIAAHCTGCELCIPVCPVDCI 137


>gi|113868895|ref|YP_727384.1| ferredoxin [Ralstonia eutropha H16]
 gi|113527671|emb|CAJ94016.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           V T  C +C    CV  CP     +             C+ CG+CE  CP DAI
Sbjct: 585 VDTGKCTMC--MACVGACPSQALRDNPERPVLSFIERNCVQCGLCEKTCPEDAI 636



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPDTE 60
           +  + C  C    C++ CP D     +    I    C     C   C    AI  D  
Sbjct: 215 IDLDLCTRCN--ACIDACPEDAI---DFSYQIDLSRCRSHRACVRACGAAAAIDFDRP 267



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 10  ILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             C  T C+++C  +     +++G+  + + P+ C+ CG C   CP  AI     
Sbjct: 341 TGC--TACIDICSTEAIGSRWHDGKGRIEVTPNLCMGCGACTTVCPSGAISYGYP 393


>gi|91788043|ref|YP_548995.1| RnfABCDGE type electron transport complex subunit B [Polaromonas
           sp. JS666]
 gi|91697268|gb|ABE44097.1| electron transport complex, RnfABCDGE type, B subunit [Polaromonas
           sp. JS666]
          Length = 221

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ E  CI C  T C++ CP D      +    +    C  C +C P CPVD I  +
Sbjct: 78  IIDEAWCIGC--TLCIKACPTDAIVGSNKMMHTVIEPYCTGCELCIPVCPVDCISLE 132


>gi|44991|emb|CAA46867.1| nitrite oxidoreductase (beta-subunit) [Nitrobacter hamburgensis
           X14]
 gi|744580|prf||2015201C nitrite oxidoreductase:SUBUNIT=beta
          Length = 513

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGAIYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|325210979|ref|YP_004286057.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium thurberi]
 gi|290775841|gb|ADD62337.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium thurberi]
          Length = 167

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|320352154|ref|YP_004193493.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
 gi|320120656|gb|ADW16202.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
          Length = 669

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E C  C    CV +CP                I    C  CGVC   CP  AI       
Sbjct: 600 EICSGC--GICVPLCPYHAISMQPSDNGPRARIEMSACKGCGVCTSACPSGAIVLHGYEE 657

Query: 63  LELWLKINS 71
            +++ +I +
Sbjct: 658 AQIFAQIEA 666


>gi|319787435|ref|YP_004146910.1| NADH-quinone oxidoreductase, chain I [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465947|gb|ADV27679.1| NADH-quinone oxidoreductase, chain I [Pseudoxanthomonas suwonensis
           11-1]
          Length = 162

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIDSARREDGTRRTTRYDIDLFKCIYCGFCEESCPVDSI 117


>gi|303244234|ref|ZP_07330571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
 gi|302485361|gb|EFL48288.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
          Length = 140

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +   C+ C+   C+  CP +        + +   +C+ CG+C   CP  AI+ D 
Sbjct: 31 IPIKCMHCEDAPCMNACPENALIRLNGKVVVDKKKCVGCGLCIEACPFGAIRMDY 85


>gi|259416891|ref|ZP_05740811.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
 gi|259348330|gb|EEW60107.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 3   YV-VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           YV ++E C LC    C+  CP D  + GE    L I    C  CG+C   CP
Sbjct: 127 YVTISEGCTLC--QHCIWSCPSDAIHLGEQGDTLEIRDRHCTGCGLCASACP 176


>gi|253682278|ref|ZP_04863075.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|253561990|gb|EES91442.1| ferredoxin [Clostridium botulinum D str. 1873]
          Length = 277

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++    CI C    C +VC  +   + +  + +    C  CG CE  C   A+     P
Sbjct: 58  PFIDDNKCINC--GKCAKVCQFNALVKTKRDIILFERLCHSCGACELVCESKALTYKKRP 115


>gi|226365388|ref|YP_002783171.1| NADH dehydrogenase subunit I [Rhodococcus opacus B4]
 gi|254772596|sp|C1AZF5|NUOI_RHOOB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226243878|dbj|BAH54226.1| NADH-quinone oxidoreductase chain I [Rhodococcus opacus B4]
          Length = 188

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  +                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIFVEGADNTDEERYSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|225075481|ref|ZP_03718680.1| hypothetical protein NEIFLAOT_00486 [Neisseria flavescens
          NRL30031/H210]
 gi|241760438|ref|ZP_04758532.1| ferredoxin [Neisseria flavescens SK114]
 gi|261364710|ref|ZP_05977593.1| ferredoxin [Neisseria mucosa ATCC 25996]
 gi|261380556|ref|ZP_05985129.1| hypothetical protein NEISUBOT_04575 [Neisseria subflava NJ9703]
 gi|224953200|gb|EEG34409.1| hypothetical protein NEIFLAOT_00486 [Neisseria flavescens
          NRL30031/H210]
 gi|241319107|gb|EER55600.1| ferredoxin [Neisseria flavescens SK114]
 gi|284796524|gb|EFC51871.1| ferredoxin [Neisseria subflava NJ9703]
 gi|288567006|gb|EFC88566.1| ferredoxin [Neisseria mucosa ATCC 25996]
          Length = 83

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCD--VCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 ILID-EEHPETHEELMAKY 76


>gi|209884301|ref|YP_002288158.1| beta subunit of formate dehydrogenase [Oligotropha carboxidovorans
           OM5]
 gi|209872497|gb|ACI92293.1| beta subunit of formate dehydrogenase [Oligotropha carboxidovorans
           OM5]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +     D+CI CG C   CP +
Sbjct: 109 KDGCMHCEDPGCLKACPAPGAIVQYSNGIVDFVHDKCIGCGYCVKGCPFN 158



 Score = 37.3 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVDAIK 56
            V + CI C +  CV+ CP +     +         L +          C+  CP  AI 
Sbjct: 140 FVHDKCIGCGY--CVKGCPFNIPRLSKADSKAYKCTLCVDRVAVGQGPACQKACPTQAIV 197

Query: 57  PDTEPGLELWLK 68
             T+  ++ W  
Sbjct: 198 FGTKDEMKQWAD 209


>gi|150389563|ref|YP_001319612.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149949425|gb|ABR47953.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 121

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y+V E C  C    CV+VCP               D C  C  C    P +AI    E  
Sbjct: 43  YIVNEQCKQC--GTCVKVCPTQNIEVANK--VQFSDHCTSCYGCLHLUPQNAIHLKNEIS 98

Query: 63  LELWL 67
            + WL
Sbjct: 99  SKRWL 103


>gi|18977342|ref|NP_578699.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus furiosus DSM 3638]
 gi|6686104|sp|Q51800|VORD_PYRFU RecName: Full=Ketoisovalerate oxidoreductase subunit vorD;
           Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin
           reductase subunit delta; AltName: Full=2-oxoisovalerate
           oxidoreductase delta chain
 gi|1197359|emb|CAA59501.1| 2-ketovalerate ferredoxin oxidoreductase delta-2 [Pyrococcus
           furiosus DSM 3638]
 gi|18893019|gb|AAL81094.1| 2-ketovalerate ferredoxin oxidoreductase subunit delta-2
           [Pyrococcus furiosus DSM 3638]
          Length = 105

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  E C+ C    C + CP    Y   +    I  D C  CG+C  ECP  AI    E
Sbjct: 46  PVVNEEKCVKCY--ICWKYCPEPAIYIKPDGYVAIDYDYCKGCGICANECPTKAITMIKE 103

Query: 61  PG 62
             
Sbjct: 104 EK 105


>gi|148263505|ref|YP_001230211.1| aldo/keto reductase [Geobacter uraniireducens Rf4]
 gi|146397005|gb|ABQ25638.1| aldo/keto reductase [Geobacter uraniireducens Rf4]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C++ C        +    +  + CI CG C   CP   I
Sbjct: 269 CKGC--GKCLDACASSALSVVDGHAQVDEEACILCGYCAASCPEFII 313


>gi|238018929|ref|ZP_04599355.1| hypothetical protein VEIDISOL_00789 [Veillonella dispar ATCC
          17748]
 gi|313892975|ref|ZP_07826552.1| ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
 gi|237864413|gb|EEP65703.1| hypothetical protein VEIDISOL_00789 [Veillonella dispar ATCC
          17748]
 gi|313442328|gb|EFR60743.1| ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
          Length = 54

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    C  VCPV    EGE    I+ D CIDCG CE  CPV  I  +
Sbjct: 3  VIADGCIKC--GSCASVCPVSAISEGETKYEIN-DTCIDCGSCESVCPVSVISAE 54


>gi|220905149|ref|YP_002480461.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869448|gb|ACL49783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 386

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDT 59
           T  C  C H  CV VCP     + E    I     C+ C +C   CP   I  +T
Sbjct: 56  TVRCHQCPHAPCVNVCPTGALQQDEQGRIIMRVQYCVACKMCMAACPYGTITMET 110


>gi|167835950|ref|ZP_02462833.1| ferredoxin [Burkholderia thailandensis MSMB43]
          Length = 170

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD           I  + C  C +C P CPVD I  
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAM 134


>gi|72383362|ref|YP_292717.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. NATL2A]
 gi|110287704|sp|Q46HL4|NDHI_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|72003212|gb|AAZ59014.1| NADH-plastoquinone oxidoreductase, subunit I:NADH-quinone
           oxidoreductase, chain I [Prochlorococcus marinus str.
           NATL2A]
          Length = 218

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGACIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELSAF 130


>gi|21243257|ref|NP_642839.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|289665567|ref|ZP_06487148.1| putative ferredoxin [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289667749|ref|ZP_06488824.1| putative ferredoxin [Xanthomonas campestris pv. musacearum
          NCPPB4381]
 gi|325915117|ref|ZP_08177443.1| NADH:ubiquinone oxidoreductase chain I-like protein [Xanthomonas
          vesicatoria ATCC 35937]
 gi|325919642|ref|ZP_08181651.1| NADH:ubiquinone oxidoreductase chain I-like protein [Xanthomonas
          gardneri ATCC 19865]
 gi|21108791|gb|AAM37375.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|325538639|gb|EGD10309.1| NADH:ubiquinone oxidoreductase chain I-like protein [Xanthomonas
          vesicatoria ATCC 35937]
 gi|325549890|gb|EGD20735.1| NADH:ubiquinone oxidoreductase chain I-like protein [Xanthomonas
          gardneri ATCC 19865]
          Length = 94

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  + E C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINELCVNCD--VCEPACPNQAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 58

Query: 55 IKPDT--EPGLELWLKINSEYATQWPNITTKKESLP 88
          I PD       +  L    +     P +  ++   P
Sbjct: 59 IDPDPAIPETHDQLLAKLMQLQRDHPELYEQEPPAP 94


>gi|116620502|ref|YP_822658.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116223664|gb|ABJ82373.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 383

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V    C  C    C   C +D     E    +    CI C +C   CP  A++ +
Sbjct: 289 VDDAACESC--GACEMRCQMDAITSPEGKAVVDRARCIGCALCVSTCPSGALRLE 341



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 10/37 (27%), Gaps = 2/37 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
             V    CI C    CV  CP            + P 
Sbjct: 316 AVVDRARCIGC--ALCVSTCPSGALRLEALGHLVDPP 350


>gi|325968142|ref|YP_004244334.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707345|gb|ADY00832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
          Length = 508

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  +  E C  C   DC+ + CP     +      I    CI CG+C+  C   AI
Sbjct: 454 MFKIDDEYCDNC--GDCLRIKCPAI---QLSRKPIIDTKICIGCGICQLVCSRGAI 504


>gi|315930446|gb|EFV09510.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICISNCIRMETSLDENGRKKVENYSINLGRCIYCGFCAEVCPELAI 137

Query: 56  KPDTEPG 62
              TE  
Sbjct: 138 VHGTEYE 144


>gi|307244904|ref|ZP_07527002.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307247081|ref|ZP_07529134.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307249303|ref|ZP_07531298.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251625|ref|ZP_07533531.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253860|ref|ZP_07535713.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256124|ref|ZP_07537911.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307258314|ref|ZP_07540056.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307260556|ref|ZP_07542249.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307262686|ref|ZP_07544315.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|306854226|gb|EFM86433.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306856450|gb|EFM88600.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306858702|gb|EFM90763.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860936|gb|EFM92943.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306863220|gb|EFM95161.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865305|gb|EFM97201.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306867653|gb|EFM99499.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306869785|gb|EFN01569.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306872014|gb|EFN03729.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 183

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           ++C  C +  CV VCP    +       +      C+ C  C   CP        E
Sbjct: 51  QSCQHCTNAPCVAVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPE 106


>gi|284006925|emb|CBA72195.1| hydrogenase-4 component A [Arsenophonus nasoniae]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C +VCPV+      N + ++   C+ C +C   CP   I+ 
Sbjct: 59  CHQCEDAPCAQVCPVNAINRINNAIQLNESLCVSCKLCGLACPFGTIEF 107


>gi|269102700|ref|ZP_06155397.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162598|gb|EEZ41094.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 552

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 11  LCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C    C++ CP        +  + I+P  C   G C   CP +AI        +
Sbjct: 190 GCD--RCLDACPAGAISANADQEIEINPYLCQGVGTCATACPTEAITYALPDADD 242



 Score = 41.9 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++C LC    CV VCP    +       L    ++CI CG+C+  CP + I  +
Sbjct: 418 DDCTLCMG--CVAVCPTRALHAIGDRPGLLFIEEDCIQCGMCQKACPENVITVE 469


>gi|262406564|ref|ZP_06083113.1| ferredoxin-type protein [Bacteroides sp. 2_1_22]
 gi|262355267|gb|EEZ04358.1| ferredoxin-type protein [Bacteroides sp. 2_1_22]
          Length = 515

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 1   MTYVV--TENCI----LCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPE 49
           M YVV   ENCI          C E CP        + +G     ++ + C+ CG CE  
Sbjct: 418 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 477

Query: 50  C---PVDAIKPDTEPGLEL 65
           C   P  AI  +  P  + 
Sbjct: 478 CPARPFRAIYIEGNPVQKE 496



 Score = 37.7 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + T  C  C    C   C   C    E   AI    C+DC  C   C   A+  +     
Sbjct: 221 IDTAKCNGC--GLCATKCKASCINSKE--HAIDYSRCVDCFDCLGACKQKALVYNPSLKK 276

Query: 64  EL 65
           + 
Sbjct: 277 QQ 278


>gi|238754042|ref|ZP_04615401.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia ruckeri ATCC
           29473]
 gi|238707794|gb|EEQ00153.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia ruckeri ATCC
           29473]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +      CI CG C   CP D  + + +  
Sbjct: 97  KDGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDIPRMNKDDN 155


>gi|257065418|ref|YP_003145090.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256793071|gb|ACV23741.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 414

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 4  VVTENC-----ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V TE C            CVE C        +  L +HP +CI CG C   CP  AI
Sbjct: 21 VHTERCVTVRNRHAACLRCVEACTSGAIIYEDGELQVHPKKCIGCGTCATACPTSAI 77



 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
             + T+ C  C+   C   CP    +         +A     C+ C +CE  CP  AI  
Sbjct: 308 AVIDTDACTSCRM--CTVFCPTGALFRVDEDDTWGVAHRASACVQCRLCENLCPQHAIHV 365

Query: 58  DTEPGLELWL 67
            ++     ++
Sbjct: 366 KSDVPARQFM 375


>gi|298346126|ref|YP_003718813.1| NADH dehydrogenase subunit I [Mobiluncus curtisii ATCC 43063]
 gi|298236187|gb|ADI67319.1| NADH dehydrogenase subunit I [Mobiluncus curtisii ATCC 43063]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 18/75 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 98  EKCVGCEL--CAWACPADAIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEAC 155

Query: 51  PVDAIKPDTEPGLEL 65
           P  A+    +  +  
Sbjct: 156 PTRALTMSNDYEIWD 170


>gi|118444231|ref|YP_878756.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT]
 gi|118134687|gb|ABK61731.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            CI C    CV  C    V   +     +  + ++CI CG C  +CP  A         E
Sbjct: 171 RCISC--GACVRTCKKKSVGALHFENFKVVRNQEKCIGCGECVIQCPTGA----WTRSHE 224

Query: 65  LWLKI 69
            + K+
Sbjct: 225 KYYKL 229


>gi|113968448|ref|YP_732241.1| formate dehydrogenase subunit beta [Shewanella sp. MR-4]
 gi|113883132|gb|ABI37184.1| formate dehydrogenase beta subunit [Shewanella sp. MR-4]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C    C++ C       +  N       D+CI CG C   CP D
Sbjct: 98  ACMHCADPACLKACSTSGAIVQHANGTVDFDSDKCIGCGYCACACPFD 145


>gi|325524747|gb|EGD02729.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia sp.
          TJI49]
          Length = 84

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPRD-PQHDESHARLMEKY 76


>gi|297620126|ref|YP_003708231.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297379103|gb|ADI37258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 166

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 21/84 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-------------------HPDECIDCG 44
           V+TE C+ C    C++VCPV      +  L I                      +CI C 
Sbjct: 65  VITEKCVHC--GTCIDVCPVKAISLTQIKLKIKNNELKIKKSHEKHKLLNYDAKKCIMCN 122

Query: 45  VCEPECPVDAIKPDTEPGLELWLK 68
           +C   CP DAI  +      ++ +
Sbjct: 123 ICLKNCPFDAISIEKNQNKMIFTE 146



 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  E C+ C    C+EVCPVD          +  ++C+ CG C   CPV AI
Sbjct: 36 IDNEKCVFCNK--CIEVCPVDAIDLNFPENTVITEKCVHCGTCIDVCPVKAI 85


>gi|296132864|ref|YP_003640111.1| protein of unknown function DUF362 [Thermincola sp. JR]
 gi|296031442|gb|ADG82210.1| protein of unknown function DUF362 [Thermincola potens JR]
          Length = 379

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            + CI C+   C+  CP      G     I  ++CI C  C+  CP  A+     P
Sbjct: 319 EDQCIFCRE--CINNCPPKALSAGNKAPEIDLNKCIRCFCCQELCPRKAVDIKKSP 372


>gi|296165390|ref|ZP_06847931.1| NADH-quinone oxidoreductase subunit I [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899281|gb|EFG78746.1| NADH-quinone oxidoreductase subunit I [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 175

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 18/75 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  +                       I+   CI CG C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIFVESADNTEAERFSPGERYGRAYQINYLRCIGCGFCIEAC 109

Query: 51  PVDAIKPDTEPGLEL 65
           P  A+    +  +  
Sbjct: 110 PTRALTMINDYEMAD 124


>gi|229591969|ref|YP_002874088.1| putative ferredoxin [Pseudomonas fluorescens SBW25]
 gi|229363835|emb|CAY51284.1| putative ferredoxin [Pseudomonas fluorescens SBW25]
          Length = 475

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C  T CV+VCP          +     ECI C  C   C     K D   GL  +
Sbjct: 274 CIDC--TMCVQVCPTGIDIRDGLQI-----ECIGCAACIDACDNIMDKMDYPRGLISY 324


>gi|261368122|ref|ZP_05981005.1| putative ferredoxin [Subdoligranulum variabile DSM 15176]
 gi|282569880|gb|EFB75415.1| putative ferredoxin [Subdoligranulum variabile DSM 15176]
          Length = 243

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  T  C  C    C + CP               D+C  C  C   CPV AI+ 
Sbjct: 173 AFYATNACTGC--GRCAKDCPAGTIRLENGRPV-WGDKCYQCLRCLHSCPVQAIQY 225


>gi|206891084|ref|YP_002248433.1| formate dehydrogenase iron-sulfur subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743022|gb|ACI22079.1| formate dehydrogenase iron-sulfur subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 131

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C  C    C   CP D     +     +  + C  CG C   C +DAI  
Sbjct: 52  CRGCDDPPCARACPEDALIVRKTGGVLLKEERCTGCGYCVKACILDAIGW 101


>gi|153854548|ref|ZP_01995818.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814]
 gi|149752857|gb|EDM62788.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814]
          Length = 309

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           E C  C    C +VCP       E    +    C  CG CE  C  
Sbjct: 58  EKCTGC--GACAQVCPNHAITMEEGRPKLDKKLCTLCGKCENFCTQ 101


>gi|30061066|gb|AAP19907.1| nitrite reductase [Haemophilus influenzae]
 gi|30061086|gb|AAP19917.1| nitrite reductase [Haemophilus influenzae]
          Length = 135

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
          ++C  C +  CV VCP    +  +    +   +  C+ C  C   CP  
Sbjct: 38 QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPYR 86


>gi|91795049|ref|YP_564700.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella denitrificans
           OS217]
 gi|91717051|gb|ABE56977.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella denitrificans
           OS217]
          Length = 475

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +     GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDNTMDRMGYPRGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|20092020|ref|NP_618095.1| putative ATPase RIL [Methanosarcina acetivorans C2A]
 gi|19917230|gb|AAM06575.1| RNase L inhibitor [Methanosarcina acetivorans C2A]
          Length = 588

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 6  TENC--ILCKHTDCVEVCPV------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C    C   +C + CP          +E +    I  + C+ CG+C  +CP DAI 
Sbjct: 8  KDKCQPRRCSK-ECEKYCPRVRTGDETIVFEDDGKPVISEELCVGCGICINKCPFDAIM 65


>gi|52842979|ref|YP_096778.1| NADH dehydrogenase subunit I [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54295610|ref|YP_128025.1| NADH dehydrogenase subunit I [Legionella pneumophila str. Lens]
 gi|81376647|sp|Q5ZRU6|NUOI_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81679125|sp|Q5WT28|NUOI_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|52630090|gb|AAU28831.1| NADH dehydrogenase I, I subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53755442|emb|CAH16938.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila str.
           Lens]
          Length = 166

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI+CG+CE  CPVD+I
Sbjct: 64  EERCIACKL--CEAVCPALAITIESEQRDDGSRRTTRYDIDMFKCINCGLCEESCPVDSI 121


>gi|226942509|ref|YP_002797582.1| 4Fe-4S ferredoxin [Azotobacter vinelandii DJ]
 gi|226717436|gb|ACO76607.1| 4Fe-4S ferredoxin [Azotobacter vinelandii DJ]
          Length = 83

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T++CI C    C   CP     +GE    I  + C +C        C+  CPVD 
Sbjct: 1  MSLKITDDCINCD--VCEPECPNGAISQGEEIYVIDSNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E  +E   ++  +Y
Sbjct: 59 IPHD-ENRVESREELMRKY 76


>gi|330465210|ref|YP_004402953.1| NADH dehydrogenase subunit I [Verrucosispora maris AB-18-032]
 gi|328808181|gb|AEB42353.1| NADH dehydrogenase subunit I [Verrucosispora maris AB-18-032]
          Length = 213

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 18/72 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                   +   I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGGDNTDEQRFSPGERYASVYQINYARCIFCGLCIEAC 109

Query: 51  PVDAIKPDTEPG 62
           P  ++    E  
Sbjct: 110 PTRSLTMSNEYE 121


>gi|325295599|ref|YP_004282113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325066047|gb|ADY74054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 58

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +  E CI C    C  VCP +  +   +    I P++CIDCG C   CP DAI  +
Sbjct: 1  MAHKIDPELCIGC--GACASVCPTNAIHPTDDGKYEIVPEDCIDCGACVEVCPTDAISAE 58


>gi|323697599|ref|ZP_08109511.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio sp. ND132]
 gi|323457531|gb|EGB13396.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans ND132]
          Length = 704

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 8   NC-ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +C I C     CV+VC  +     +  L  +  + C  CG C   CP  AI
Sbjct: 133 SCGIGCIGLGTCVKVCSFNAIRLSDAGLPVVDWNACRSCGKCAEACPTGAI 183


>gi|294638170|ref|ZP_06716426.1| formate dehydrogenase, beta subunit [Edwardsiella tarda ATCC 23685]
 gi|291088737|gb|EFE21298.1| formate dehydrogenase, beta subunit [Edwardsiella tarda ATCC 23685]
          Length = 316

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 95  KDGCMHCADPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRMNPEDK 153


>gi|225175188|ref|ZP_03729184.1| electron transport complex, RnfABCDGE type, B subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169364|gb|EEG78162.1| electron transport complex, RnfABCDGE type, B subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 261

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+ CPVD      N   I    C +CG C   CP + I
Sbjct: 216 CIACN--ICVKKCPVDAIRMENNIATIDSYICNNCGTCVEVCPRNTI 260



 Score = 34.6 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            C    +C  VCPVD     +  L  I  D CI CG C+  CP   I
Sbjct: 140 GCLGLGNCERVCPVDAITMSDKGLPIIDVDACISCGKCKNTCPRQVI 186


>gi|242277840|ref|YP_002989969.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638]
 gi|242120734|gb|ACS78430.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638]
          Length = 461

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
          +    C  C+   C EVCPVD     E     I   +C+ CG C   C       D 
Sbjct: 9  IDPAVCTGCR--RCAEVCPVDAIVGAEGEAQTIDTSKCVICGQCVLTCSAFVSPFDD 63


>gi|254171839|ref|ZP_04878515.1| Phosphoadenosine phosphosulfate reductase family protein
           [Thermococcus sp. AM4]
 gi|214033735|gb|EEB74561.1| Phosphoadenosine phosphosulfate reductase family protein
           [Thermococcus sp. AM4]
          Length = 631

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    CV  CP +          + +  + C  C  C   CP+  I
Sbjct: 576 CVGC--GVCVGKCPEEALSIDPLSRKIVVDWNRCTHCRECMEVCPLLKI 622


>gi|94264814|ref|ZP_01288591.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454753|gb|EAT05011.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 938

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E CI C    C  +CP            +         C  CG+C   CPV AI  
Sbjct: 863 VDKETCIGC--GLCQSLCPYQAIRIAKDDNNKRKAETITASCKGCGICAAHCPVFAISM 919



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 22/85 (25%), Gaps = 25/85 (29%)

Query: 3   YVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLA-----IHPDECID-- 42
           Y+  + C  C    C + CP                 +            I P+ C+   
Sbjct: 37  YIDADKCTAC--GMCTQYCPRHLVDDYNEGLALTRPIHIDYPQAVPASYFIDPEACLHLK 94

Query: 43  ---CGVCEPECPVDAIKPDTEPGLE 64
              C +C   C   AI    E    
Sbjct: 95  HGTCKICVSACQTRAIDFAQEAEER 119


>gi|40846362|gb|AAR92471.1| nitrite oxidoreductase beta subunit [Nitrobacter sp. PJN1]
          Length = 513

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|89896541|ref|YP_520028.1| hypothetical protein DSY3795 [Desulfitobacterium hafniense Y51]
 gi|89335989|dbj|BAE85584.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 93

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C  CK  +C+ VCP   + E    + +    C++CG C   CP  AI+    
Sbjct: 28 NELCKSCKEKNCLLVCPAGLYSEQNGEIIVEWAGCLECGTCRAVCPQKAIEWIYP 82


>gi|54298764|ref|YP_125133.1| NADH dehydrogenase subunit I [Legionella pneumophila str. Paris]
 gi|148361094|ref|YP_001252301.1| NADH dehydrogenase I subunit I [Legionella pneumophila str. Corby]
 gi|296108424|ref|YP_003620125.1| NADH dehydrogenase I chain I [Legionella pneumophila 2300/99 Alcoy]
 gi|81679378|sp|Q5X1B5|NUOI_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918793|sp|A5IHV5|NUOI_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|53752549|emb|CAH13981.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila str.
           Paris]
 gi|148282867|gb|ABQ56955.1| NADH dehydrogenase I, I subunit [Legionella pneumophila str. Corby]
 gi|295650326|gb|ADG26173.1| NADH dehydrogenase I chain I [Legionella pneumophila 2300/99 Alcoy]
          Length = 166

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI+CG+CE  CPVD+I
Sbjct: 64  EERCIACKL--CEAVCPALAITIESEQREDGSRRTTRYDIDMFKCINCGLCEESCPVDSI 121


>gi|108803761|ref|YP_643698.1| 2-oxoacid:acceptor oxidoreductase subunit delta,
           pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM
           9941]
 gi|108765004|gb|ABG03886.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM
           9941]
          Length = 403

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           M  VV  + CI C+   C   CP +CF   E  L  I+ + C  CG+C   CPV+     
Sbjct: 284 MRPVVNFDTCIKCR--QCWIDCPDECFEVTEEGLHPINYEYCTGCGICSQVCPVEDCIVM 341

Query: 59  TEPGLELWL-KINSEYATQWPNITTKKESLPSAAKMDGVK 97
                  ++ + + +    W      K+   +  +    K
Sbjct: 342 VNDL--EFIDEGDRDVYEMW------KQDPEAYHRWREEK 373


>gi|330999614|ref|ZP_08323324.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329574328|gb|EGG55901.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 320

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C    C ++CP     + +     I    C     C   CP +
Sbjct: 120 RCMQCFDAPCRKLCPFGAIDQTKQGAVKIDDRVCFGGAKCRDVCPWN 166


>gi|325610637|gb|ADZ36565.1| NADH dehydrogenase 18 kDa subunit [Stewartia crassifolia]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|312880860|ref|ZP_07740660.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM
           12260]
 gi|310784151|gb|EFQ24549.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM
           12260]
          Length = 292

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + C  C    C + C              +  D C  CG+C   CP  AI+ +  
Sbjct: 71  PVVDPDRCDRC--GRCAQACRFGALLCLGAGPVRVLEDLCHGCGLCARVCPRGAIREEPV 128

Query: 61  PGLELWLK 68
           P  E  L 
Sbjct: 129 PVGERRLA 136


>gi|332653498|ref|ZP_08419243.1| electron transport complex, RnfABCDGE type, B subunit
           [Ruminococcaceae bacterium D16]
 gi|332518644|gb|EGJ48247.1| electron transport complex, RnfABCDGE type, B subunit
           [Ruminococcaceae bacterium D16]
          Length = 266

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T  CI C    C +VC  D      N   I  ++C  C +C  ECP+  I 
Sbjct: 213 TAGCIGC--MKCTKVCHFDAIKVENNVAYIDQEKCKGCQLCVKECPMGVIH 261



 Score = 39.2 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  + DC   C  D  +  +    +  ++C  CG C   CP   I    E
Sbjct: 140 GCLGYGDCTRACAFDAIHIVDGIAKVDREKCTGCGACAAACPNHVISVIPE 190


>gi|238498530|ref|XP_002380500.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus
          flavus NRRL3357]
 gi|317155729|ref|XP_001825325.2| translation initiation factor RLI1 [Aspergillus oryzae RIB40]
 gi|220693774|gb|EED50119.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus
          flavus NRRL3357]
          Length = 604

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV                  I    CI CG+C  +CP  A
Sbjct: 11 VNSDKCKPKKCR-QECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGA 69

Query: 55 IK 56
          I 
Sbjct: 70 IH 71


>gi|149190374|ref|ZP_01868646.1| electron transport complex protein RnfB [Vibrio shilonii AK1]
 gi|148835753|gb|EDL52718.1| electron transport complex protein RnfB [Vibrio shilonii AK1]
          Length = 193

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|113972243|ref|YP_736036.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886927|gb|ABI40979.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 475

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +     GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMERMGYPLGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|92118754|ref|YP_578483.1| nitrate reductase, beta subunit [Nitrobacter hamburgensis X14]
 gi|91801648|gb|ABE64023.1| respiratory nitrate reductase beta subunit [Nitrobacter
           hamburgensis X14]
          Length = 513

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGAIYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|83716728|ref|YP_438907.1| formate dehydrogenase subunit beta [Burkholderia thailandensis
           E264]
 gi|167615424|ref|ZP_02384059.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           Bt4]
 gi|257141997|ref|ZP_05590259.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           E264]
 gi|83650553|gb|ABC34617.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           E264]
          Length = 304

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|34496907|ref|NP_901122.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Chromobacterium violaceum ATCC 12472]
 gi|34102763|gb|AAQ59127.1| probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Chromobacterium violaceum ATCC 12472]
          Length = 468

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 7/49 (14%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T+ CI C    CV+VCP                ECI C  C   C    
Sbjct: 262 TKGCIDC--GICVQVCPTGIDIRNGLQY-----ECIGCAACIDACDQVM 303


>gi|148265673|ref|YP_001232379.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146399173|gb|ABQ27806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 307

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           C  C    C+  C V+ + + +    I +   C+ C  C   CP +
Sbjct: 106 CNHCNEPACLTSCFVNAYTKTKEGAVIYNSKVCVGCRNCMIACPFN 151


>gi|116750554|ref|YP_847241.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116699618|gb|ABK18806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1015

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V    C  C    CV  CP       ++ +  I+   C  CG+C  ECP  AI+      
Sbjct: 943  VDPSLCAACL--VCVRSCPYGVPQINKDDVSEINEALCQGCGICASECPAKAIRLAHYAD 1000

Query: 63   LELWLKINS 71
             ++ +K+++
Sbjct: 1001 DQIMVKVDA 1009


>gi|300857124|ref|YP_003782108.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii
           DSM 13528]
 gi|300437239|gb|ADK17006.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii
           DSM 13528]
          Length = 316

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDE-CIDCGVCEPECPVDAIKPD 58
           +CI C    CV VCPV      +     +     C+ C  CE  C   AI   
Sbjct: 63  SCINC--GACVSVCPVGIHTMSKGMEHEVDHSIDCLGCRKCENACTESAISIM 113


>gi|269865863|ref|XP_002652072.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220063206|gb|EED41983.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 284

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 6  TENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C      +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 23 PDKC----AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 72


>gi|218133340|ref|ZP_03462144.1| hypothetical protein BACPEC_01205 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992213|gb|EEC58217.1| hypothetical protein BACPEC_01205 [Bacteroides pectinophilus ATCC
           43243]
          Length = 293

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V++ CI C    C + C         + + +   +C +CG C   CP DA   DTE
Sbjct: 167 VSDKCINC--GVCEKACREQAITFTGSEIILDKSKCNNCGRCAKACPTDA--WDTE 218


>gi|183231113|ref|XP_656317.2| dihydropyrimidine dehydrogenase [Entamoeba histolytica HM-1:IMSS]
 gi|169802613|gb|EAL50934.2| dihydropyrimidine dehydrogenase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 901

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 5   VTENCILCKHTDCVEVC---PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  NCI C    C   C         +  N   +  ++CI C +C   CPV+AI+ 
Sbjct: 827 IKNNCIGC--GSCALSCRDNSTTAIVKDGNRYRVDDEKCIGCALCSSVCPVNAIEY 880


>gi|146282512|ref|YP_001172665.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri A1501]
 gi|145570717|gb|ABP79823.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri A1501]
          Length = 312

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            +NC+ C    C++ CP      +  N +   + + CI CG C   CP +
Sbjct: 100 KDNCMHCADPGCLKACPSPGAIVQYANGIVDFNSEHCIGCGYCVAGCPFN 149


>gi|114049492|ref|YP_740042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113890934|gb|ABI44985.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 475

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +     GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMERMGYPLGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|94264130|ref|ZP_01287928.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93455466|gb|EAT05660.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 938

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E CI C    C  +CP            +         C  CG+C   CPV AI  
Sbjct: 863 VDKETCIGC--GLCQSLCPYQAIRIAKDDNNKRKAETITASCKGCGICAAHCPVFAISM 919



 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 22/85 (25%), Gaps = 25/85 (29%)

Query: 3   YVVTENCILCKHTDCVEVCP-------------VDCFYEGENFLA-----IHPDECID-- 42
           Y+  + C  C    C + CP                 +            I P+ C+   
Sbjct: 37  YIDADKCTAC--GMCTQYCPRHLVDDYNEGLALTRPIHIDYPQAVPASYFIDPEACLHLK 94

Query: 43  ---CGVCEPECPVDAIKPDTEPGLE 64
              C +C   C   AI    E    
Sbjct: 95  HGTCKICVSACQTRAIDFAQEAEER 119


>gi|126434140|ref|YP_001069831.1| NADH dehydrogenase subunit I [Mycobacterium sp. JLS]
 gi|156633528|sp|A3PWR3|NUOI_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|126233940|gb|ABN97340.1| NADH dehydrogenase subunit I [Mycobacterium sp. JLS]
          Length = 174

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGDDNTADERYSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|92118907|ref|YP_578636.1| nitrate reductase, beta subunit [Nitrobacter hamburgensis X14]
 gi|91801801|gb|ABE64176.1| respiratory nitrate reductase beta subunit [Nitrobacter
           hamburgensis X14]
          Length = 513

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGAIYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|78185994|ref|YP_374037.1| hypothetical protein Plut_0104 [Chlorobium luteolum DSM 273]
 gi|78165896|gb|ABB22994.1| hypothetical protein Plut_0104 [Chlorobium luteolum DSM 273]
          Length = 83

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + + + CI+C    C   CPV+    G++   I   +C+DC     E    A+ P  
Sbjct: 22 MAHKINDTCIMC--GACEPECPVNAISPGDDTYVIDATKCVDCVGHHDEPACVAVCPSD 78


>gi|307267579|ref|ZP_07549053.1| putative PAS/PAC sensor protein [Thermoanaerobacter wiegelii
          Rt8.B1]
 gi|306917398|gb|EFN47698.1| putative PAS/PAC sensor protein [Thermoanaerobacter wiegelii
          Rt8.B1]
          Length = 473

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  CPV           +    CI CG C  ECP +A
Sbjct: 10 NCKNCY--RCVRHCPVKAIKVVGGQAEVVDSLCIYCGRCIIECPQNA 54


>gi|290489788|gb|ADD31301.1| NADH-plastoquinone oxidoreductase subunit I protein [Plumbago
           auriculata]
          Length = 170

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|260677471|ref|YP_003208253.1| NADH-plastoquinone oxidoreductase subunit I [Coix lacryma-jobi]
 gi|209361409|gb|ACI43324.1| NADH-plastoquinone oxidoreductase subunit I [Coix lacryma-jobi]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|288931789|ref|YP_003435849.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894037|gb|ADC65574.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 136

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C +VCP       +   +    D CI CG C   C + AI    
Sbjct: 56  CRACSEPPCAQVCPTGAMTPRKGGGVFFKEDLCIACGNCMEACTIGAIFRQE 107


>gi|256821763|ref|YP_003145726.1| cytochrome c oxidase accessory protein CcoG [Kangiella koreensis
           DSM 16069]
 gi|256795302|gb|ACV25958.1| cytochrome c oxidase accessory protein CcoG [Kangiella koreensis
           DSM 16069]
          Length = 469

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCP                ECI C  C   C     K   EPGL  +  
Sbjct: 266 CIDCL--QCVHVCPTGIDIRDGLQY-----ECIACAACIDACDEVMDKMGYEPGLIRYTT 318

Query: 69  INSEYATQWPNITTK 83
            N +   +   I  K
Sbjct: 319 ENRDNGKEVKLIRGK 333


>gi|167391856|ref|YP_001671736.1| NADH dehydrogenase subunit I [Carica papaya]
 gi|166344183|gb|ABY86833.1| NADH-plastoquinone oxidoreductase subunit I [Carica papaya]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|254976687|ref|ZP_05273159.1| putative flavodoxin [Clostridium difficile QCD-66c26]
 gi|255094070|ref|ZP_05323548.1| putative flavodoxin [Clostridium difficile CIP 107932]
 gi|255315821|ref|ZP_05357404.1| putative flavodoxin [Clostridium difficile QCD-76w55]
 gi|255518482|ref|ZP_05386158.1| putative flavodoxin [Clostridium difficile QCD-97b34]
 gi|255651602|ref|ZP_05398504.1| putative flavodoxin [Clostridium difficile QCD-37x79]
 gi|260684648|ref|YP_003215933.1| putative flavodoxin [Clostridium difficile CD196]
 gi|260688306|ref|YP_003219440.1| putative flavodoxin [Clostridium difficile R20291]
 gi|306521409|ref|ZP_07407756.1| putative flavodoxin [Clostridium difficile QCD-32g58]
 gi|260210811|emb|CBA65833.1| putative flavodoxin [Clostridium difficile CD196]
 gi|260214323|emb|CBE06673.1| putative flavodoxin [Clostridium difficile R20291]
          Length = 249

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  T+ CI C    CVE+CP++             + C  C  C   CP +AI+   +  
Sbjct: 185 FHYTDKCIGC--GKCVELCPLNNINLKNKKPV-WKNSCTHCMACICGCPTEAIEYKNKTQ 241

Query: 63  LEL 65
              
Sbjct: 242 NRE 244


>gi|154484478|ref|ZP_02026926.1| hypothetical protein EUBVEN_02192 [Eubacterium ventriosum ATCC
          27560]
 gi|149734326|gb|EDM50243.1| hypothetical protein EUBVEN_02192 [Eubacterium ventriosum ATCC
          27560]
          Length = 101

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
            +  E C  C    CV VCP       E     I  D C  CG+C   CP  AIK +
Sbjct: 43 PVIDEEKCKQCLL--CVPVCPDSAIPVKEYKRQTIDYDHCKGCGICVKACPFGAIKME 98


>gi|145596568|ref|YP_001160865.1| NADH dehydrogenase subunit I [Salinispora tropica CNB-440]
 gi|145305905|gb|ABP56487.1| NADH-quinone oxidoreductase, chain I [Salinispora tropica CNB-440]
          Length = 211

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 18/72 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                   +   I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGGDNTEEERFSPGERYASVYQINYARCIFCGLCIEAC 109

Query: 51  PVDAIKPDTEPG 62
           P  ++    E  
Sbjct: 110 PTRSLTMSNEYE 121


>gi|22711918|ref|NP_683856.1| NADH dehydrogenase subunit I [Chaetosphaeridium globosum]
 gi|75302097|sp|Q8M9T7|NDHI_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|22416922|gb|AAM96522.1| subunit I of NADH-plastoquinone oxidoreductase [Chaetosphaeridium
           globosum]
          Length = 182

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 16/95 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++       F            +I    CI CG C   CP + +
Sbjct: 59  DKCIACE--VCVRVCPINLPVVDWEFQKSIKKKQLKSYSIDFGVCIFCGNCVEYCPTNCL 116

Query: 56  KPDTEPGLELW--LKINSEY-ATQWPNITTKKESL 87
               E  L ++   ++N ++ A     I++ K+ +
Sbjct: 117 SMTEEYELSVYDRHELNYDHIALGRLPISSIKDPM 151


>gi|46805102|dbj|BAD17341.1| rice chloroplast 18kDa protein related to a subunit of NADH
           dehydrogenase [Oryza sativa Japonica Group]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|33860719|ref|NP_892280.1| NADH dehydrogenase subunit I [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|81711989|sp|Q7TUH1|NDHI_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|33633661|emb|CAE18618.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 208

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELWLKINSEY 73
               E  L  + + N  +
Sbjct: 120 SMTEEYELATFDRHNLNF 137


>gi|46200214|ref|YP_005881.1| NADH-quinone oxidoreductase chain I [Thermus thermophilus HB27]
 gi|55980061|ref|YP_143358.1| NADH-quinone oxidoreductase subunit 9 [Thermus thermophilus HB8]
 gi|2499326|sp|Q56224|NQO9_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1
           subunit 9
 gi|81405222|sp|Q72GD6|NUOI_THET2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|90109660|pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109668|pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109676|pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109684|pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588594|pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588602|pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588610|pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588618|pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588626|pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588634|pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588642|pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588650|pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863610|pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863623|pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279869|gb|AAA97946.1| NADH dehydrogenase I, subunit NQO9 [Thermus thermophilus]
 gi|46197842|gb|AAS82254.1| NADH-quinone oxidoreductase chain I [Thermus thermophilus HB27]
 gi|55771474|dbj|BAD69915.1| NADH-quinone oxidoreductase chain 9 [Thermus thermophilus HB8]
          Length = 182

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 18/65 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C    C   CP    Y                       I+   CI CG+CE  C
Sbjct: 51  EKCIGCSL--CAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAI 55
           P  AI
Sbjct: 109 PTGAI 113


>gi|86147960|ref|ZP_01066264.1| electron transport complex protein RnfB [Vibrio sp. MED222]
 gi|85834285|gb|EAQ52439.1| electron transport complex protein RnfB [Vibrio sp. MED222]
          Length = 197

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|84393395|ref|ZP_00992154.1| electron transport complex protein RnfB [Vibrio splendidus 12B01]
 gi|148977611|ref|ZP_01814187.1| electron transport complex protein RnfB [Vibrionales bacterium
           SWAT-3]
 gi|218708973|ref|YP_002416594.1| electron transport complex protein RnfB [Vibrio splendidus LGP32]
 gi|254807928|sp|B7VLT8|RNFB_VIBSL RecName: Full=Electron transport complex protein rnfB
 gi|84376004|gb|EAP92893.1| electron transport complex protein RnfB [Vibrio splendidus 12B01]
 gi|145963126|gb|EDK28394.1| electron transport complex protein RnfB [Vibrionales bacterium
           SWAT-3]
 gi|218321992|emb|CAV18005.1| Electron transport complex protein rnfB [Vibrio splendidus LGP32]
          Length = 197

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|325126919|ref|YP_004286156.1| NADH-plastoquinone oxidoreductase subunit I [Fragaria vesca subsp.
           vesca]
 gi|324022831|gb|ADY15405.1| NADH-plastoquinone oxidoreductase subunit I [Fragaria vesca subsp.
           vesca]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|319779206|ref|YP_004130119.1| NADH-ubiquinone oxidoreductase chain I [Taylorella equigenitalis
           MCE9]
 gi|317109230|gb|ADU91976.1| NADH-ubiquinone oxidoreductase chain I [Taylorella equigenitalis
           MCE9]
          Length = 161

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP        +             I   +CI CG CE  CPV+AI
Sbjct: 59  EERCIACKL--CEAVCPAMAITIESHEREDGARKTSRYDIDLTKCIFCGFCEESCPVEAI 116


>gi|295106797|emb|CBL04340.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 187

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C+ C++ +CV  CP     + E+    + P +C+ C VC   CP   
Sbjct: 54  CMHCENPECVPCCPSGASQQDEDGTVWVDPKKCLSCKVCVNACPYGM 100


>gi|227828793|ref|YP_002830573.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.14.25]
 gi|227460589|gb|ACP39275.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.14.25]
          Length = 87

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V   NCI CK   C   CP          + +  + C  CGVC   CPV AI    E
Sbjct: 30 PVVDYNNCIGCK--ACFMFCPESTIVPSNGKVRVDYEYCKGCGVCANVCPVKAISMVNE 86


>gi|226324705|ref|ZP_03800223.1| hypothetical protein COPCOM_02491 [Coprococcus comes ATCC 27758]
 gi|225207153|gb|EEG89507.1| hypothetical protein COPCOM_02491 [Coprococcus comes ATCC 27758]
          Length = 263

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C +VC  D  +  +N   I P++C +CG C  +CP   I
Sbjct: 218 CIGCKM--CEKVCESDAVHVVDNIAHIDPEKCTNCGKCAEKCPKKII 262



 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C     CV+ CP D  +  +    +  + C  CG C   CP   I
Sbjct: 143 GCLGFGSCVKACPFDAIHIVDGIAVVDKEACKACGKCIATCPKHLI 188


>gi|189162325|ref|YP_001936571.1| NADH dehydrogenase subunit I [Fagopyrum esculentum subsp.
           ancestrale]
 gi|166065411|gb|ABY79786.1| NADH dehydrogenase subunit I [Fagopyrum esculentum subsp.
           ancestrale]
          Length = 170

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP                +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E  +    ++N
Sbjct: 120 SMTEEYELSMYDRHELN 136


>gi|150401994|ref|YP_001329288.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|159906215|ref|YP_001549877.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|150033024|gb|ABR65137.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
 gi|159887708|gb|ABX02645.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 253

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++V ENC  CK   C ++CP +     +    +    C  C  C   CP +AI    E  
Sbjct: 177 FIVNENCNACKL--CEKLCPKNNISVTDKPEFL--HRCDICYSCIHNCPQNAIHLKNEKS 232

Query: 63  LELWL 67
              ++
Sbjct: 233 SMRFI 237


>gi|139388150|ref|YP_001123341.1| NADH dehydrogenase subunit [Barbarea verna]
 gi|156632606|sp|A4QKG1|NDHI_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286541|dbj|BAF50166.1| NADH dehydrogenase subunit [Barbarea verna]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|77919300|ref|YP_357115.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77545383|gb|ABA88945.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 240

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
          ++  E C  C    CV  C        +     +  + C   G C   CP DAI  +   
Sbjct: 8  HIDEEKCNGC--GHCVPACAEGAIQIIDGKARLVADNLCDGLGACLGHCPQDAIHIEVRE 65

Query: 62 GLE 64
            E
Sbjct: 66 ADE 68


>gi|28275270|ref|NP_783525.1| ferredoxin [Shewanella oneidensis MR-1]
          Length = 346

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG C   C     K D +  L  ++ 
Sbjct: 277 CVDCNL--CVEVCPTGIDIRDGLQY-----ECINCGACVDACNETMQKFDYKQNLISYVS 329

Query: 69  INS 71
            N 
Sbjct: 330 ENE 332


>gi|86149440|ref|ZP_01067671.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|121612213|ref|YP_001001211.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006104|ref|ZP_02271862.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|218563160|ref|YP_002344940.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|116248560|sp|Q0P857|NUOI_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633516|sp|A1W1H0|NUOI_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|85840222|gb|EAQ57480.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|87249800|gb|EAQ72759.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|112360867|emb|CAL35668.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315927683|gb|EFV07014.1| NADH-quinone oxidoreductase, chain I family protein [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 213

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C ++C  +C     +            +I+   CI CG C   CP  AI
Sbjct: 80  NERCIGC--GLCEKICISNCIRMETSLDENGRKKVENYSINLGRCIYCGFCAEVCPELAI 137

Query: 56  KPDTEPG 62
              TE  
Sbjct: 138 VHGTEYE 144


>gi|291547384|emb|CBL20492.1| Electron transfer flavoprotein, alpha subunit [Ruminococcus sp.
          SR1/5]
          Length = 396

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD------TEP 61
           C+LC    CVE CP        N + +  D C  CG+C   CP  AI+ +       + 
Sbjct: 10 KCVLC--GVCVEKCPFGALTIEGNGIVV-GDACRMCGLCVRNCPEKAIRFEQKAKSFDKD 66

Query: 62 GLELWLK-INSEYATQWPNITT 82
            + +L  +  E     P    
Sbjct: 67 KWKNFLIYVEQERGEIHPVTFE 88


>gi|289769826|ref|ZP_06529204.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces lividans
           TK24]
 gi|289700025|gb|EFD67454.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces lividans
           TK24]
          Length = 247

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 94  EKCVGCEL--CAWACPADAIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEAC 151

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 152 PTRALTM 158


>gi|182701683|ref|ZP_02613881.2| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           botulinum NCTC 2916]
 gi|182669829|gb|EDT81805.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           botulinum NCTC 2916]
          Length = 176

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ +C+ CK   C   CP+           I   +CI CG C   CP ++I
Sbjct: 127 VSSSCVSCKL--CKTACPMGIVPYDYKGNLIDHPDCIQCGKCINICPKNSI 175


>gi|169824821|ref|YP_001692432.1| ferredoxin [Finegoldia magna ATCC 29328]
 gi|297587204|ref|ZP_06945849.1| ferredoxin [Finegoldia magna ATCC 53516]
 gi|302379640|ref|ZP_07268125.1| ferredoxin [Finegoldia magna ACS-171-V-Col3]
 gi|303234546|ref|ZP_07321183.1| ferredoxin [Finegoldia magna BVS033A4]
 gi|167831626|dbj|BAG08542.1| ferredoxin [Finegoldia magna ATCC 29328]
 gi|297575185|gb|EFH93904.1| ferredoxin [Finegoldia magna ATCC 53516]
 gi|302312547|gb|EFK94543.1| ferredoxin [Finegoldia magna ACS-171-V-Col3]
 gi|302494380|gb|EFL54149.1| ferredoxin [Finegoldia magna BVS033A4]
          Length = 56

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPVDC  EG+    I  D CIDCG C   CPVDA   D
Sbjct: 1  MAYKISDDCIAC--GQCKPECPVDCISEGD-IYTIDQDACIDCGSCADVCPVDAPHQD 55


>gi|197121507|ref|YP_002133458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter sp. K]
 gi|220916274|ref|YP_002491578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171356|gb|ACG72329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter sp. K]
 gi|219954128|gb|ACL64512.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 100

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC------IDCGVCEPECPVDA 54
          M   +TE CI C    C   CP     +G++   I+PD C           C   CPVD 
Sbjct: 1  MATFITEECINC--GACEPECPNSAISQGDDIYVINPDLCTECVGFHGEEACAAVCPVDC 58

Query: 55 IKPD 58
            PD
Sbjct: 59 CVPD 62


>gi|154414441|ref|XP_001580248.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121914463|gb|EAY19262.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 658

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    C  +CP D            + PD+C  CG+CE  CP ++    T    E  
Sbjct: 595 CIGC--GRC-TMCPNDAITLIPAKWVYKVDPDKCNGCGLCESVCPTNSCGLIT---REKA 648

Query: 67  LKINSEYATQW 77
            ++N++ A  W
Sbjct: 649 RELNAK-AKHW 658


>gi|222053362|ref|YP_002535724.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
 gi|221562651|gb|ACM18623.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
          Length = 449

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          VV   CI C    C   CPV+     +    A+  ++CI C  C   CP  A++ 
Sbjct: 17 VVEGKCIAC-GARCESSCPVNSIEMSDGGEPAVLAEKCIGCEKCIKVCPASALEM 70


>gi|86157468|ref|YP_464253.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85773979|gb|ABC80816.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 100

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC------IDCGVCEPECPVDA 54
          M   +TE CI C    C   CP     +G++   I+PD C           C   CPVD 
Sbjct: 1  MATFITEECINC--GACEPECPNSAISQGDDIYVINPDLCTECVGFHGEEACAAVCPVDC 58

Query: 55 IKPD 58
            PD
Sbjct: 59 CVPD 62


>gi|15832635|ref|NP_311408.1| polyferredoxin [Escherichia coli O157:H7 str. Sakai]
 gi|168748422|ref|ZP_02773444.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4113]
 gi|168756291|ref|ZP_02781298.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4401]
 gi|168761129|ref|ZP_02786136.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4501]
 gi|168768611|ref|ZP_02793618.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4486]
 gi|168773567|ref|ZP_02798574.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4196]
 gi|168778485|ref|ZP_02803492.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4076]
 gi|168787865|ref|ZP_02812872.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC869]
 gi|168798890|ref|ZP_02823897.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC508]
 gi|195936661|ref|ZP_03082043.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4024]
 gi|208809392|ref|ZP_03251729.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4206]
 gi|208812703|ref|ZP_03254032.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4045]
 gi|208821200|ref|ZP_03261520.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4042]
 gi|209398407|ref|YP_002271989.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4115]
 gi|217327417|ref|ZP_03443500.1| putative polyferredoxin [Escherichia coli O157:H7 str. TW14588]
 gi|261223049|ref|ZP_05937330.1| putative polyferredoxin [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259400|ref|ZP_05951933.1| putative polyferredoxin [Escherichia coli O157:H7 str. FRIK966]
 gi|13362851|dbj|BAB36804.1| putative polyferredoxin [Escherichia coli O157:H7 str. Sakai]
 gi|187770682|gb|EDU34526.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4196]
 gi|188017040|gb|EDU55162.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4113]
 gi|189003633|gb|EDU72619.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4076]
 gi|189356572|gb|EDU74991.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4401]
 gi|189362196|gb|EDU80615.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4486]
 gi|189368440|gb|EDU86856.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4501]
 gi|189372305|gb|EDU90721.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC869]
 gi|189378670|gb|EDU97086.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC508]
 gi|208729193|gb|EDZ78794.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4206]
 gi|208733980|gb|EDZ82667.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4045]
 gi|208741323|gb|EDZ89005.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4042]
 gi|209159807|gb|ACI37240.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4115]
 gi|217319784|gb|EEC28209.1| putative polyferredoxin [Escherichia coli O157:H7 str. TW14588]
 gi|320188852|gb|EFW63511.1| Putative polyferredoxin [Escherichia coli O157:H7 str. EC1212]
 gi|326340317|gb|EGD64121.1| Putative polyferredoxin [Escherichia coli O157:H7 str. 1125]
 gi|326345001|gb|EGD68745.1| Putative polyferredoxin [Escherichia coli O157:H7 str. 1044]
          Length = 284

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            CVE CP       E  +A+  ++CIDC VC+  CP +AI+    P
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIRGVNSP 69



 Score = 35.7 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             + C LC    C   C    F   E  L I+   C  C  C   C   A+  +
Sbjct: 185 DPQKCQLC--GACWRACEQQVFSLNEGHLQINDALCNGCQNCIAVCFHQAMTVE 236


>gi|116749158|ref|YP_845845.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698222|gb|ABK17410.1| glutamate synthase (NADPH) GltB3 subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 777

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 8/51 (15%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE------NFLAIHPDECIDCGVCEPECPV 52
            C  C    CV +CP       E        + + PD CI CG C   CP 
Sbjct: 717 ACRDC--GICVTMCPQTAISRQEKDNPFGFEMVVDPDRCIGCGFCAGSCPC 765


>gi|330898583|gb|EGH30002.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 291

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 14/89 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPV---DAIKP 57
            ++    CI C  T C++ CPVD           +  DEC  C +C   CP      I+ 
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGASRLMHTVIIDECTGCDLCVAPCPGIVLKCIRC 141

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKES 86
             +             +  WP     +E+
Sbjct: 142 HWQRSRPS--------SAVWPLPPELQEA 162


>gi|323693792|ref|ZP_08107987.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323502178|gb|EGB18045.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 274

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            E+C  C    CVE CP+      +      P  CI C  C  +CP +A   D    L  
Sbjct: 201 PEDCDSC--GICVEACPMGSISREDPKEV--PGICIKCQACVKKCPTNAKYFDDPAFLSH 256

Query: 66  WLKINSEY 73
              +   Y
Sbjct: 257 IAMLEQNY 264


>gi|290489758|gb|ADD31286.1| NADH-plastoquinone oxidoreductase subunit I protein [Ilex cornuta]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|282163197|ref|YP_003355582.1| hypothetical protein MCP_0527 [Methanocella paludicola SANAE]
 gi|282155511|dbj|BAI60599.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 294

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V    C+ C    C   C  +     E+  AI P  C  CGVC   CP  AI     P
Sbjct: 62  PVVDESACVAC--GACETYCRFNAVSMREH-AAIDPTACEACGVCVAVCPAGAISLVERP 118

Query: 62  GLELWL 67
             E+++
Sbjct: 119 CGEVYV 124


>gi|217967124|ref|YP_002352630.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
           [Dictyoglomus turgidum DSM 6724]
 gi|217336223|gb|ACK42016.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
           [Dictyoglomus turgidum DSM 6724]
          Length = 137

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKP 57
            E C+ C +  CV  CP    Y  E  L +     +C  CGVC   CP +A++ 
Sbjct: 82  EEKCVHCGY--CVSYCPTKALYRNEKTLMVGFDSQKCTACGVCIEICPYNAMEM 133


>gi|196233845|ref|ZP_03132683.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
 gi|196222039|gb|EDY16571.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
          Length = 233

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTE 60
           C+ C+   C  VCP D   + ++ +        C+ C  C   CP    K   E
Sbjct: 57  CMHCEDPTCARVCPADAIKQDDHGIVHSAAKPRCVACSNCVIACPFGVPKMKVE 110


>gi|150401207|ref|YP_001324973.1| nitrite and sulphite reductase 4Fe-4S region [Methanococcus
           aeolicus Nankai-3]
 gi|150013910|gb|ABR56361.1| nitrite and sulphite reductase 4Fe-4S region [Methanococcus
           aeolicus Nankai-3]
          Length = 618

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            ENC  C    C ++C V+      +    + + CI CG C   CP +      E  +
Sbjct: 492 EENCNGC--GRCADICKVEAIDIRGDTSYTNYNICIGCGKCIKGCPNEGRDMKEEGFM 547


>gi|40846360|gb|AAR92470.1| nitrite oxidoreductase beta subunit [Nitrobacter winogradskyi]
          Length = 513

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|91773352|ref|YP_566044.1| ferredoxin [Methanococcoides burtonii DSM 6242]
 gi|91712367|gb|ABE52294.1| electron transport complex rnfB-like protein [Methanococcoides
           burtonii DSM 6242]
          Length = 265

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI CK   C + CP D          +  D+C  CG+C  +CP + I+ 
Sbjct: 218 CIGCK--ICEKNCPEDAIKVTNFLAEVDQDKCTACGICVEKCPQNCIEM 264


>gi|78222964|ref|YP_384711.1| Iron-sulfur cluster-binding protein [Geobacter metallireducens
           GS-15]
 gi|78194219|gb|ABB31986.1| Iron-sulfur cluster-binding protein [Geobacter metallireducens
           GS-15]
          Length = 149

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           C  C   DC+  C      + +  +  I  ++C+ C  C   CP  A++
Sbjct: 62  CRHCDEPDCLRACISGAIQKDDKGVVRIDTEQCVGCWSCVMACPYGAVQ 110


>gi|29345836|ref|NP_809339.1| hypothetical protein BT_0426 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337729|gb|AAO75533.1| 4Fe-4S ferredoxin, iron-sulfur binding -like protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 256

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  T  CI CK   C + CPV      E         C  C  C   CP  A++ 
Sbjct: 187 PFHATSECIGCK--RCEKSCPVGNITMKERRPV-WGKNCTACLACYHVCPQHAVQY 239


>gi|85713243|ref|ZP_01044269.1| electron transport complex protein RnfB [Idiomarina baltica OS145]
 gi|85692938|gb|EAQ30910.1| electron transport complex protein RnfB [Idiomarina baltica OS145]
          Length = 194

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I  
Sbjct: 111 EDECIGC--TKCIQACPVDAILGAAKQMHTVIEHECTGCDLCVEPCPVDCIDM 161


>gi|150018410|ref|YP_001310664.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904875|gb|ABR35708.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 257

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V++ C  C+   C  VCPV          +     C  C  C   CP  AI  
Sbjct: 181 FNVSDACTGCR--TCEAVCPVSNIVMKNKKPSF-KHNCEQCMACVQWCPKQAINY 232


>gi|94985024|ref|YP_604388.1| NADH-quinone oxidoreductase, chain I [Deinococcus geothermalis DSM
           11300]
 gi|115502526|sp|Q1IZW5|NUOI_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|94555305|gb|ABF45219.1| NADH dehydrogenase subunit I [Deinococcus geothermalis DSM 11300]
          Length = 179

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C    C  VCP    Y                       I+   CI CG+CE  C
Sbjct: 52  EKCIGCSL--CAAVCPAYAIYVEAAENDPLNPTSPGERYAKVYEINMLRCIFCGLCEEAC 109

Query: 51  PVDAIKPDTEPGLELW 66
           P  A+    E  +  +
Sbjct: 110 PTGAVVLGNEFEMADY 125


>gi|319937315|ref|ZP_08011722.1| hypothetical protein HMPREF9488_02557 [Coprobacillus sp. 29_1]
 gi|319807681|gb|EFW04274.1| hypothetical protein HMPREF9488_02557 [Coprobacillus sp. 29_1]
          Length = 391

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C  C    C++ CP D      + + I  ++CI C VC  ECP
Sbjct: 11 KCEHCIK--CLKSCPADAISIVNHEVQIDEEKCIHCDVCIKECP 52


>gi|282162714|ref|YP_003355099.1| hypothetical protein MCP_0044 [Methanocella paludicola SANAE]
 gi|282155028|dbj|BAI60116.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 268

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V ++CI C    C   C +      +   AI   +C  CG C   CP  AI    +  + 
Sbjct: 199 VRDSCIGC--GKCERACFLSAIKVVDGRAAI-GGDCRGCGRCADVCPSKAIVVSVDDRMA 255

Query: 65  LWLKI 69
             + +
Sbjct: 256 EAIAM 260


>gi|225568415|ref|ZP_03777440.1| hypothetical protein CLOHYLEM_04492 [Clostridium hylemonae DSM
           15053]
 gi|225162643|gb|EEG75262.1| hypothetical protein CLOHYLEM_04492 [Clostridium hylemonae DSM
           15053]
          Length = 584

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C  C    C++  CP       +  + I    C  CG+CE  C  DAI
Sbjct: 529 EDKCRKC--GMCMKPGCPA-MTRNEDGTIHIDDTMCTGCGLCEDLCKFDAI 576


>gi|197303420|ref|ZP_03168459.1| hypothetical protein RUMLAC_02142 [Ruminococcus lactaris ATCC
           29176]
 gi|197297418|gb|EDY31979.1| hypothetical protein RUMLAC_02142 [Ruminococcus lactaris ATCC
           29176]
          Length = 298

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + CI C    C + C +D           +  ECI CG C   CP DAI  
Sbjct: 237 NDKCIGC--QQCTKACKMDVNVLKTP----NHPECIRCGACMKVCPKDAIHY 282


>gi|161502318|ref|YP_001569430.1| putative polyferredoxin [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863665|gb|ABX20288.1| hypothetical protein SARI_00350 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 287

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           E C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP   
Sbjct: 191 EACRMC--GACWRSCPENVIQFADDTLTITAARCTGCGGCAAVCPHQALRLRFDMEPAQT 248

Query: 65  LWLK 68
             + 
Sbjct: 249 RHIA 252



 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +   +I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFLLTQGQASIDMARCIACGDCLFVCPVDAITGIK 71

Query: 60 E 60
           
Sbjct: 72 P 72


>gi|157377606|ref|YP_001476206.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319980|gb|ABV39078.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 479

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   + GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDTTMERMGYDKGLIAYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|159040858|ref|YP_001540110.1| adenylylsulfate reductase, beta subunit [Caldivirga
          maquilingensis IC-167]
 gi|157919693|gb|ABW01120.1| adenylylsulfate reductase, beta subunit [Caldivirga
          maquilingensis IC-167]
          Length = 161

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 1  MT-YVVTENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVD 53
          M  YV+   C  C   DCV +CP       ++ +       I P+ C +C  C   CP  
Sbjct: 1  MPSYVIPAKCTGC--GDCVNICPSHIMRFTKSGVLGRKAVNIEPESCWECYNCVKHCPQG 58

Query: 54 AIK 56
          A++
Sbjct: 59 AVQ 61


>gi|156741447|ref|YP_001431576.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Roseiflexus castenholzii DSM 13941]
 gi|156232775|gb|ABU57558.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Roseiflexus castenholzii DSM 13941]
          Length = 1010

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+H  C  VCPV    ++ E    +  + C+    C   CP  
Sbjct: 824 CQQCEHAPCEIVCPVAATVHDAEGLNNMVYNRCVGTKYCSNNCPYK 869


>gi|148658229|ref|YP_001278434.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Roseiflexus sp. RS-1]
 gi|148570339|gb|ABQ92484.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Roseiflexus sp. RS-1]
          Length = 1010

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+H  C  VCPV    ++ E    +  + C+    C   CP  
Sbjct: 824 CQQCEHAPCEIVCPVAATVHDAEGLNNMVYNRCVGTKYCSNNCPYK 869


>gi|108798542|ref|YP_638739.1| NADH dehydrogenase subunit I [Mycobacterium sp. MCS]
 gi|119867642|ref|YP_937594.1| NADH dehydrogenase subunit I [Mycobacterium sp. KMS]
 gi|123179140|sp|Q1BBQ1|NUOI_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633529|sp|A1UD96|NUOI_MYCSK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|108768961|gb|ABG07683.1| NADH dehydrogenase subunit I [Mycobacterium sp. MCS]
 gi|119693731|gb|ABL90804.1| NADH dehydrogenase subunit I [Mycobacterium sp. KMS]
          Length = 174

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGDDNTADERYSPGERYGRVYQINYLRCIGCGLCIEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|78778014|ref|YP_394329.1| NADH dehydrogenase subunit I [Sulfurimonas denitrificans DSM 1251]
 gi|110287777|sp|Q30PI7|NUOI_SULDN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|78498554|gb|ABB45094.1| NADH-quinone oxidoreductase, chain I [Sulfurimonas denitrificans
           DSM 1251]
          Length = 211

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 12/68 (17%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDA 54
            TE CI C    C ++C  +C                  +I+   CI CG C   CP  A
Sbjct: 95  DTERCIGC--GLCEKICISNCIRIDTKLDENSRKEVTEYSINLGRCIFCGYCAEVCPELA 152

Query: 55  IKPDTEPG 62
           I    E  
Sbjct: 153 ITHGGEYE 160


>gi|117922552|ref|YP_871744.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614884|gb|ABK50338.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 475

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +     GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDQTMERMGYPLGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|325610549|gb|ADZ36491.1| NADH dehydrogenase 18 kDa subunit [Stewartia rubiginosa]
 gi|325610562|gb|ADZ36502.1| NADH dehydrogenase 18 kDa subunit [Stewartia serrata]
 gi|325610570|gb|ADZ36509.1| NADH dehydrogenase 18 kDa subunit [Stewartia monadelpha]
 gi|325610583|gb|ADZ36520.1| NADH dehydrogenase 18 kDa subunit [Stewartia rostrata]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|312143536|ref|YP_003994982.1| iron-sulfur protein [Halanaerobium sp. 'sapolanicus']
 gi|311904187|gb|ADQ14628.1| putative iron-sulfur protein [Halanaerobium sp. 'sapolanicus']
          Length = 420

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAI 55
              C  C    C+ +CPV+   E E+     + +  + C+ CGVC   CP + I
Sbjct: 289 NNKCSQC--QKCLSICPVNAISEIEDEEGKKIVVDKELCLGCGVCLRTCPENNI 340


>gi|297520078|ref|ZP_06938464.1| electron transport protein HydN [Escherichia coli OP50]
          Length = 115

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 12 CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+   C  VCP       + F+ +  + CI C  C   CP  A+
Sbjct: 1  CEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM 44


>gi|291286609|ref|YP_003503425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883769|gb|ADD67469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 203

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +C  C++  C   CPV   Y+ E    + ++ D C +   C   CP  A     +   
Sbjct: 57  SCNHCENPACTAACPVGAIYKREEDGIVIVNRDLCQNIKACAVACPFGAPNFGDDDSE 114


>gi|288818242|ref|YP_003432590.1| formate dehydrogenase beta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|288787642|dbj|BAI69389.1| formate dehydrogenase beta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308751839|gb|ADO45322.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Hydrogenobacter thermophilus TK-6]
          Length = 294

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    C++ CP      + EN +      +CI C  C   CP D  + D       
Sbjct: 106 CMHCGDPGCLKACPSPGAVIQYENGIVDFDHSKCIGCKFCLSGCPFDIPRYDANNKPWK 164


>gi|258622981|ref|ZP_05717996.1| FixG-related protein [Vibrio mimicus VM573]
 gi|258584764|gb|EEW09498.1| FixG-related protein [Vibrio mimicus VM573]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 275 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 325


>gi|269863882|ref|XP_002651380.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220064638|gb|EED42677.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 288

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 6  TENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C      +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 23 PDKC----AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 72


>gi|197118575|ref|YP_002139002.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           bemidjiensis Bem]
 gi|197087935|gb|ACH39206.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           bemidjiensis Bem]
          Length = 584

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIK 56
           V  ++CI C+   C+++ CP   +           I P  C  C VC   C   AI+
Sbjct: 527 VAEDSCIGCR--ACLKIGCPAIEWVPTSGKKGQAKIDPLLCNGCDVCRQLCKFSAIQ 581


>gi|330808474|ref|YP_004352936.1| cytochrome c oxidase accessory protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376582|gb|AEA67932.1| Putative cytochrome c oxidase accessory protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 471

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C  T CV+VCP          +     ECI C  C   C     K D   GL  +
Sbjct: 270 CIDC--TMCVQVCPTGIDIRDGLQI-----ECIGCAACIDACDNIMDKMDYPRGLISY 320


>gi|293370286|ref|ZP_06616843.1| putative ferredoxin-type protein NapF [Bacteroides ovatus SD CMC
           3f]
 gi|292634581|gb|EFF53113.1| putative ferredoxin-type protein NapF [Bacteroides ovatus SD CMC
           3f]
          Length = 514

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 1   MTYVV--TENCI----LCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPE 49
           M YVV   ENCI          C E CP        + +G     ++ + C+ CG CE  
Sbjct: 417 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 476

Query: 50  C---PVDAIKPDTEPGLEL 65
           C   P  AI  +  P  + 
Sbjct: 477 CPARPFRAIYIEGNPVQKE 495



 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + T  C  C    C   C   C    E   AI    C+DC  C   C   A+        
Sbjct: 221 IDTAKCNGC--GLCATKCKAACINSKE--HAIDYSRCVDCFNCLGVCKQKALVYAPSLKK 276

Query: 64  ELWLK 68
           +  ++
Sbjct: 277 QSDVE 281


>gi|290489770|gb|ADD31292.1| NADH-plastoquinone oxidoreductase subunit I protein [Berberidopsis
           corallina]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|302876992|ref|YP_003845625.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
 gi|307687683|ref|ZP_07630129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
 gi|302579849|gb|ADL53861.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
          Length = 254

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + V ++C+ C    C +VCP++     +        +C+DC  C   CP +AI 
Sbjct: 181 FNVNDSCVGCNM--CKKVCPIENIEMEDKKPV-WKGKCVDCMACINICPQNAIN 231


>gi|261856152|ref|YP_003263435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothiobacillus neapolitanus c2]
 gi|261836621|gb|ACX96388.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothiobacillus neapolitanus c2]
          Length = 81

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T+ CI C    C   CP     +G     I P+ C +C        C   CPVD 
Sbjct: 1  MSLLITDECINCD--VCEPECPNGAISQGPEIYVIDPNLCTECVGHYDTPQCVEVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++ ++Y
Sbjct: 59 IPLD-PDNRETHDELLAKY 76


>gi|139389858|ref|YP_001123518.1| NADH dehydrogenase subunit I [Crucihimalaya wallichii]
 gi|156632611|sp|A4QKY8|NDHI_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286720|dbj|BAF50343.1| NADH dehydrogenase subunit [Crucihimalaya wallichii]
          Length = 172

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|114329711|ref|YP_740531.1| NADH-plastoquinone oxidoreductase subunit I [Citrus sinensis]
 gi|122166137|sp|Q09MC2|NDHI_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|113952677|gb|ABI49075.1| NADH-plastoquinone oxidoreductase subunit I [Citrus sinensis]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELATYDRHELN 136


>gi|71906356|ref|YP_283943.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
           RCB]
 gi|71845977|gb|AAZ45473.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
           aromatica RCB]
          Length = 472

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV VCP                ECI CG C   C     K     GL  +  
Sbjct: 267 CVDC--GLCVAVCPTGIDIRKGQQY-----ECIGCGACIDVCDPVMDKVGLPRGLIRYTT 319

Query: 69  INS 71
            N+
Sbjct: 320 ENA 322


>gi|34557124|ref|NP_906939.1| indolepyruvate oxidoreductase subunit IORA.-.-iorindolepyruvate
           ferredoxin oxidoreductase alpha subunit [Wolinella
           succinogenes DSM 1740]
 gi|34482839|emb|CAE09839.1| INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA .-.-IORINDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT [Wolinella
           succinogenes]
          Length = 617

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC 46
             V  + C+ C H      CP    Y  +  + + P  C  CG C
Sbjct: 555 ATVDKDKCVACDHCLTEYKCP-SMSYGEDGKVEVDPFLCAGCGAC 598


>gi|11467259|ref|NP_043091.1| NADH dehydrogenase subunit I [Zea mays]
 gi|1171861|sp|P46722|NDHI_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|902288|emb|CAA60352.1| NADH dehydrogenase subunit [Zea mays]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|331091232|ref|ZP_08340073.1| hypothetical protein HMPREF9477_00716 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404679|gb|EGG84218.1| hypothetical protein HMPREF9477_00716 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 263

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C +VC  D     +N   I P++C +CG C  +CP   I 
Sbjct: 218 CIGCKM--CQKVCEYDAITVEDNIAHIDPEKCTNCGACAEKCPKKIIM 263



 Score = 39.2 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
             CV+ CP D  +       +  + C  CG C   CP + I+       +  ++ NS+
Sbjct: 148 GTCVKACPFDAIHIENGVAVVDKEACKACGKCIAVCPQNLIEL-VPYEQKHLVQCNSK 204



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 18/74 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
             V  E C  C    C+ VCP              V C  + +    +   +  CI C +
Sbjct: 166 AVVDKEACKAC--GKCIAVCPQNLIELVPYEQKHLVQCNSKDKGKDVMSACKAGCIGCKM 223

Query: 46  CEPECPVDAIKPDT 59
           C+  C  DAI  + 
Sbjct: 224 CQKVCEYDAITVED 237


>gi|310659230|ref|YP_003936951.1| indolepyruvate ferredoxin oxidoreductase [Clostridium sticklandii
           DSM 519]
 gi|308826008|emb|CBH22046.1| Indolepyruvate ferredoxin oxidoreductase [Clostridium sticklandii]
          Length = 600

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAI 55
           YV    CI CK   C++  CP     +     +   +I  ++C+ C +C   CPV+AI
Sbjct: 532 YVDPNICIGCK--TCIKTNCPPLRMKKYEGIEKLKSSIDKNQCVGCSICAQVCPVNAI 587


>gi|291518800|emb|CBK74021.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Butyrivibrio fibrisolvens 16/4]
          Length = 289

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    CV+ C        +  + I   +C +C  C   CP DA
Sbjct: 164 EDACISC--GVCVKACRESALQMEDGKVTIDRSKCNNCARCVKSCPTDA 210


>gi|227824723|ref|ZP_03989555.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905222|gb|EEH91140.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 411

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +   C +VC  D  + G++ ++I  D+C+ C  C   C +DA+
Sbjct: 56 EQGSCAQVCHWDALHPGKDGISIDNDKCVGCQACVDACKLDAL 98


>gi|261349574|ref|ZP_05974991.1| formate hydrogenlyase, iron-sulfur subunit I [Methanobrevibacter
          smithii DSM 2374]
 gi|288861532|gb|EFC93830.1| formate hydrogenlyase, iron-sulfur subunit I [Methanobrevibacter
          smithii DSM 2374]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C++  CV++CP +          +  ++CI CG+C   CP  AI
Sbjct: 44 CQHCENAPCVKICPTNAMTTD----CVKTEDCIGCGLCSIICPFGAI 86


>gi|197131390|gb|ACH47213.1| NADH-plastoquinone oxidoreductase subunit I [Sarcocaulon
           vanderietiae]
          Length = 176

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWKFESDIRKKRLLNYSIDFGLCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|213612664|ref|ZP_03370490.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 119

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI    
Sbjct: 12 VTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIK 71

Query: 60 E 60
           
Sbjct: 72 P 72


>gi|167759359|ref|ZP_02431486.1| hypothetical protein CLOSCI_01706 [Clostridium scindens ATCC 35704]
 gi|167662916|gb|EDS07046.1| hypothetical protein CLOSCI_01706 [Clostridium scindens ATCC 35704]
          Length = 588

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C  C    C++  CP     + +  + I    C  CG+CE  C   AI
Sbjct: 533 EDKCKKC--GMCMKPGCPA-MTRKPDGTIYIDDTMCTGCGLCESLCKFGAI 580


>gi|167386568|ref|XP_001737815.1| dihydropyrimidine dehydrogenase [Entamoeba dispar SAW760]
 gi|165899267|gb|EDR25906.1| dihydropyrimidine dehydrogenase, putative [Entamoeba dispar SAW760]
          Length = 901

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 5   VTENCILCKHTDCVEVC---PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  NCI C    C   C         +  N   +  ++CI C +C   CPV+AI+ 
Sbjct: 827 IKNNCIGC--GSCALSCRDNSTTAIVKDGNRYRVDDEKCIGCALCSSVCPVNAIEY 880


>gi|91228909|ref|ZP_01262809.1| electron transport complex protein RnfB [Vibrio alginolyticus
           12G01]
 gi|269968667|ref|ZP_06182663.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B]
 gi|91187540|gb|EAS73872.1| electron transport complex protein RnfB [Vibrio alginolyticus
           12G01]
 gi|269826721|gb|EEZ81059.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B]
          Length = 198

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|20808576|ref|NP_623747.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479652|ref|ZP_05092953.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Carboxydibrachium pacificum DSM 12653]
 gi|20517204|gb|AAM25351.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034406|gb|EEB75179.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Carboxydibrachium pacificum DSM 12653]
          Length = 583

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  E C  C    C+ + CP     + +   +I PD+C  C VC+  CP DAI+ 
Sbjct: 525 IDQEKCKKC--GMCLRIGCP--AISKKDGIFSIDPDQCTGCTVCQQVCPFDAIEC 575


>gi|197131384|gb|ACH47210.1| NADH-plastoquinone oxidoreductase subunit I [Geranium macrorrhizum]
          Length = 173

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIELPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|213029517|ref|ZP_03343964.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 216

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C    CV+ C    V C              CI CG C   CP  A +   +   
Sbjct: 57  DRCIGC--GACVKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLAWQRKPDQLW 114

Query: 64  E 64
           +
Sbjct: 115 Q 115


>gi|210623722|ref|ZP_03294006.1| hypothetical protein CLOHIR_01957 [Clostridium hiranonis DSM 13275]
 gi|210153410|gb|EEA84416.1| hypothetical protein CLOHIR_01957 [Clostridium hiranonis DSM 13275]
          Length = 323

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   VVTENC----ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VV +NC    I C    C + C  D  +   N   I P++C+ C VC  +CP   I  D
Sbjct: 205 VVKDNCSAGCIGC--GICEKNCKFDAVHVENNVAKIDPEKCVGCMVCVEKCPTKVIAGD 261



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  E C+ C    CVE CP             + I  D C+ C +C  +C  DAI  + +
Sbjct: 238 IDPEKCVGC--MVCVEKCPTKVIAGDLAKRQKVTIDKDLCVGCTICAKQCKFDAISGELK 295

Query: 61  PGLE 64
              E
Sbjct: 296 VAHE 299



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 10  ILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             C     CV VC  D  +  +    +  ++C++CG C   CP   I
Sbjct: 138 QGCLGLGTCVSVCAFDAIHVVDGVAVVDEEKCVNCGKCREVCPKGLI 184



 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  + C+ C  T C + C  D    E +    I  D+C+ C +C  +CP  AI
Sbjct: 270 IDKDLCVGC--TICAKQCKFDAISGELKVAHEIDQDKCVGCHLCMQKCPKKAI 320



 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 18/73 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGV 45
             V  E C+ C    C EVCP              V+C    +  +        CI CG+
Sbjct: 162 AVVDEEKCVNC--GKCREVCPKGLIVEKPASQEIIVNCNNTQKGKVVKDNCSAGCIGCGI 219

Query: 46  CEPECPVDAIKPD 58
           CE  C  DA+  +
Sbjct: 220 CEKNCKFDAVHVE 232


>gi|193222326|emb|CAL61798.2| Putative ferredoxin [Herminiimonas arsenicoxydans]
          Length = 472

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCPV               ECI C  C   C     K  +  GL  +  
Sbjct: 266 CIDC--TMCVQVCPVGIDIRDGLQY-----ECIGCAACVDACNSVMDKVGSPRGLIRYST 318

Query: 69  INS 71
            N+
Sbjct: 319 DNA 321


>gi|115391957|ref|YP_778545.1| NADH dehydrogenase subunit I [Jasminum nudiflorum]
 gi|122164925|sp|Q06R76|NDHI_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|110456278|gb|ABG74683.1| NADH dehydrogenase 18 kDa subunit [Jasminum nudiflorum]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYNRHELN 136


>gi|91794283|ref|YP_563934.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella denitrificans
           OS217]
 gi|91716285|gb|ABE56211.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella denitrificans
           OS217]
          Length = 494

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI+CG C   C     +   +  L  ++ 
Sbjct: 292 CVDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDACNQTMDQFGYQSNLISFIS 344

Query: 69  INS 71
            N 
Sbjct: 345 ENE 347


>gi|75300874|sp|Q8HVR6|NDHI_HOFFA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460596|gb|AAN61738.1| NADH dehydrogenase subunit I [Hofmeisteria fasciculata]
          Length = 166

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYHRHELN 136


>gi|116750299|ref|YP_846986.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Syntrophobacter fumaroxidans MPOB]
 gi|116699363|gb|ABK18551.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Syntrophobacter fumaroxidans MPOB]
          Length = 185

 Score = 42.3 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C+  C     +  E  + + I PD+CI+C  C   CP   I+   +
Sbjct: 42 RCRHCDPAPCLLACLPGAIFRDEELDTVLIDPDKCINCASCAMACPFGVIRYHED 96


>gi|306486046|gb|ADM92670.1| NADH-plastoquinone oxidoreductase subunit I [Davidia involucrata]
          Length = 163

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|299483498|gb|ADJ19579.1| putative Fe-S PAS/PAC sensor protein [Treponema primitia ZAS-2]
          Length = 583

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    C+  CPV      +    I P  CI CG C   CP  A
Sbjct: 13 CQDCFK--CISRCPVKSIQVKDGHAEIIPKICIYCGNCVISCPARA 56


>gi|296159154|ref|ZP_06841981.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. Ch1-1]
 gi|295890715|gb|EFG70506.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. Ch1-1]
          Length = 279

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
             +  + CI C  T C++ CPVD           +  + C  C +C P CPVD I
Sbjct: 82  AVIDEQVCIGC--TLCMQACPVDAIVGAPKQMHTVIAELCTGCDLCVPPCPVDCI 134


>gi|292493660|ref|YP_003529099.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
 gi|291582255|gb|ADE16712.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIDSEQREDGTRRTTLYDIDLFKCIYCGFCEESCPVDSI 117


>gi|289191855|ref|YP_003457796.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938305|gb|ADC69060.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-------------FYEGENFLAIHPDECIDCGVCEPEC 50
           V+ E CI C+   C  VCP                 Y  +    I+P++CI C  C   C
Sbjct: 52  VIEELCIGCEG--CANVCPTKAIEMIPIEPVKITENYVKDKIPKINPEKCIYCLYCHDFC 109

Query: 51  PVDAIKPDTEPGL 63
           PV ++  +  P  
Sbjct: 110 PVFSVFNEISPIH 122


>gi|261213239|ref|ZP_05927521.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio sp. RC341]
 gi|260837513|gb|EEX64216.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio sp. RC341]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 275 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 325


>gi|225544176|ref|YP_002720166.1| ndhI [Jatropha curcas]
 gi|224979617|gb|ACN72744.1| ndhI [Jatropha curcas]
          Length = 170

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWQLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|156573585|gb|ABU85130.1| NADH-plastoquinone oxidoreductase subunit I [Yucca schidigera]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|134094848|ref|YP_001099923.1| putative ferredoxin transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 466

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  T CV+VCPV               ECI C  C   C     K  +  GL  +  
Sbjct: 260 CIDC--TMCVQVCPVGIDIRDGLQY-----ECIGCAACVDACNSVMDKVGSPRGLIRYST 312

Query: 69  INS 71
            N+
Sbjct: 313 DNA 315


>gi|94266046|ref|ZP_01289766.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93453406|gb|EAT03831.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 677

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 9/55 (16%)

Query: 7   ENCILCKHTD----CVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPV 52
           + CI C        C   C            G+    +    CI CG C   CP 
Sbjct: 614 QRCISCGLCRDCHICEHTCHYGAISRQDLGAGDYRYVVDESRCIGCGFCAGVCPC 668


>gi|40846366|gb|AAR92473.1| nitrite oxidoreductase beta subunit [Nitrobacter sp. KB212]
          Length = 513

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|57234506|ref|YP_181467.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224954|gb|AAW40011.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 623

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCF-YEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           TY ++  NC  C    C + CP      +G+    I    +C  CG C   C + A+
Sbjct: 566 TYNIIDANCPGC--GLCYKACPTGAIISQGKKMPVILDQSKCTKCGACFDACKLHAV 620


>gi|323149136|ref|YP_004222700.1| NADH-plastoquinone oxidoreductase subunit I [Anthriscus cerefolium]
 gi|289645629|gb|ADD13692.1| NADH-plastoquinone oxidoreductase subunit I [Anthriscus cerefolium]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|315186502|gb|EFU20261.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM
          6578]
          Length = 277

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT--- 59
          +  + C  C   +C+  CP       +     I    C   G C   CPV AI  +    
Sbjct: 8  IDEDLCTGC--GECIPNCPEGALQIIDGKARLISDLFCDGLGACIGHCPVGAISFEEREA 65

Query: 60 EPGLELWLKIN 70
          EP  E  +  N
Sbjct: 66 EPYDERAVIAN 76


>gi|312898042|ref|ZP_07757448.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera micronuciformis F0359]
 gi|310620867|gb|EFQ04421.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera micronuciformis F0359]
          Length = 645

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +VV  + CI CK       CP   F +      I   +C+ CGVC   CPV+AI
Sbjct: 587 PFVVDQDKCIGCKKCL-STGCPALRFDDESRKSNI-SVDCVGCGVCAQVCPVNAI 639


>gi|257094088|ref|YP_003167729.1| putative glutamate synthase (NADPH) small subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046612|gb|ACV35800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 540

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 8   NCILCKHTD-CVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C  C   D C  VCP +   +         + D C  CG+C  ECP  AIK + E 
Sbjct: 483 SCGNCFECDNCYGVCPDNAVIKLGPGNRFQFNYDYCKGCGMCVAECPCGAIKMEAEE 539


>gi|288940311|ref|YP_003442551.1| RnfABCDGE type electron transport complex subunit B [Allochromatium
           vinosum DSM 180]
 gi|288895683|gb|ADC61519.1| electron transport complex, RnfABCDGE type, B subunit
           [Allochromatium vinosum DSM 180]
          Length = 189

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  E CI C  T C++ CPVD      +   A+   EC  C +C   CPV  I  
Sbjct: 103 AFIDPELCIGC--TRCIQACPVDAIIGAAKQLHAVLNSECTGCELCVEPCPVACITM 157


>gi|212542837|ref|XP_002151573.1| RNase L inhibitor of the ABC superfamily, putative [Penicillium
          marneffei ATCC 18224]
 gi|210066480|gb|EEA20573.1| RNase L inhibitor of the ABC superfamily, putative [Penicillium
          marneffei ATCC 18224]
          Length = 604

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV                  I    CI CG+C  +CP  A
Sbjct: 11 VNSDKCKPKKCR-QECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGA 69

Query: 55 IK 56
          I 
Sbjct: 70 IH 71


>gi|139389473|ref|YP_001123169.1| NADH dehydrogenase subunit I [Olimarabidopsis pumila]
 gi|156632619|sp|A4QJY6|NDHI_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286367|dbj|BAF49994.1| NADH dehydrogenase subunit [Olimarabidopsis pumila]
          Length = 172

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|18312131|ref|NP_558798.1| ferredoxin like protein [Pyrobaculum aerophilum str. IM2]
 gi|18159564|gb|AAL62980.1| ferredoxin like protein [Pyrobaculum aerophilum str. IM2]
          Length = 96

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            E C  C+   C  +CP  C+ +  +++ +  + C++CG C   CP  +I+ +  
Sbjct: 30 DPEKCRKCEKKPCTYMCPAKCYVQQGDYVVLSTEACVECGTCRVVCPHGSIEWNYP 85


>gi|50234042|ref|YP_052819.1| NADH dehydrogenase subunit I [Oryza nivara]
 gi|109156637|ref|YP_654256.1| NADH dehydrogenase subunit I [Oryza sativa Indica Group]
 gi|68565729|sp|Q6ENA3|NDHI_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|148887177|sp|P0C384|NDHI_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|148887178|sp|P0C385|NDHI_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|148887179|sp|P0C386|NDHI_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|42795529|gb|AAS46096.1| NADH dehydrogenase subunit I [Oryza sativa Indica Group]
 gi|42795595|gb|AAS46161.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group]
 gi|42795659|gb|AAS46224.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group]
 gi|49615066|dbj|BAD26849.1| NADH dehydrogenase subunit I [Oryza nivara]
 gi|290790616|gb|ADD62876.1| NADH-plastoquinone oxidoreductase subunit I [Oryza sativa Japonica
           Group]
 gi|290790685|gb|ADD62944.1| NADH-plastoquinone oxidoreductase subunit I [Oryza meridionalis]
 gi|290790754|gb|ADD63012.1| NADH-plastoquinone oxidoreductase subunit I [Oryza australiensis]
 gi|290790822|gb|ADD63079.1| NADH-plastoquinone oxidoreductase subunit I [Potamophila
           parviflora]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|116754470|ref|YP_843588.1| flavoprotein [Methanosaeta thermophila PT]
 gi|116665921|gb|ABK14948.1| flavoprotein [Methanosaeta thermophila PT]
          Length = 244

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y V  E C  C+       CP           +I    C  CG C P C   AI
Sbjct: 139 PYAVNREMCNACEICPPQTACPQGAISGDGVR-SIDLMRCDGCGTCLPLCSSSAI 192


>gi|306475962|gb|ADM88883.1| nitrite oxidoreductase beta subunit [Nitrobacter sp. enrichment
           culture clone N3]
          Length = 513

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|303325992|ref|ZP_07356435.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863908|gb|EFL86839.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 302

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 6   TENCI-LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           T+ C+  C    DCV+VCP       +  + +   +C  CGVC   CP
Sbjct: 133 TDVCVYSCLGFGDCVQVCPFGAMEVRDGLVRVDRSKCTGCGVCVAACP 180



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-VCEPECPVDAIKP 57
           CI C    C++ CP       +N + I    C+  G +CE  C     + 
Sbjct: 214 CIKC--GKCIKTCPAKAVRLEDNRIVIDHLLCLSYGPICEEACVGTCPRH 261



 Score = 34.6 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 18/72 (25%)

Query: 4   VVTENCILCKHTDCVEVCP--------------VDCFYEGENFLAIHPDE--CIDCGVCE 47
           V    C  C    CV  CP              V C    +    +   +  CI CG C 
Sbjct: 164 VDRSKCTGC--GVCVAACPRGILELTPQRGRVAVYCNTRDKLRAVMDVCDVGCIKCGKCI 221

Query: 48  PECPVDAIKPDT 59
             CP  A++ + 
Sbjct: 222 KTCPAKAVRLED 233


>gi|303328509|ref|ZP_07358946.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861503|gb|EFL84440.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 295

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +  E C  C    C E+C           + I PD C  CG C   C   A+
Sbjct: 60  PVLDKERCTNC--GACREICAYKAIARLGANIMIFPDMCHGCGGCFAVCEAQAL 111


>gi|298676082|ref|YP_003727832.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methanohalobium evestigatum Z-7303]
 gi|298289070|gb|ADI75036.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanohalobium evestigatum Z-7303]
          Length = 58

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +++ENC+ C    CV+ CPV+    +GEN   +   EC DCG C   CP +AI+ +
Sbjct: 3  AVIISENCVGC--ATCVDECPVEAISLDGENIAVVDEGECSDCGECVDVCPTEAIEIE 58


>gi|260779356|ref|ZP_05888248.1| electron transport complex protein RnfB [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605520|gb|EEX31815.1| electron transport complex protein RnfB [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 194

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|260219883|emb|CBA26860.1| Ferredoxin [Curvibacter putative symbiont of Hydra
          magnipapillata]
          Length = 87

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP +  Y GE    I P +C +C        C   CPV  
Sbjct: 1  MALLITDECINCD--VCEPECPNEAIYLGEQIYEIDPHKCTECVGHFDEPQCVQVCPVAC 58

Query: 55 IKPDTE 60
          I  + E
Sbjct: 59 IPVNPE 64


>gi|242239936|ref|YP_002988117.1| formate dehydrogenase subunit beta [Dickeya dadantii Ech703]
 gi|242131993|gb|ACS86295.1| formate dehydrogenase, beta subunit [Dickeya dadantii Ech703]
          Length = 300

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +      CI CG C   CP +  + + +  
Sbjct: 97  KDGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRMNKDDN 155


>gi|242309040|ref|ZP_04808195.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
 gi|239524464|gb|EEQ64330.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
          Length = 83

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++ E CI C    C E CP +   EG+ +  I P+ C +C        C   CPVDA
Sbjct: 1  MSLMINEKCIACD--ACREECPNEAIEEGDPYYIIDPERCTECYGFYDEPACLSVCPVDA 58

Query: 55 IKPDTEPGLELWLKINSEYATQWP 78
          I  D    +E   ++  +Y+    
Sbjct: 59 IVSD-PDNIESLEELKFKYSQLHK 81


>gi|197286544|ref|YP_002152416.1| propanediol utilization dehydratase activating enzyme [Proteus
           mirabilis HI4320]
 gi|194684031|emb|CAR45337.1| putative propanediol utilization protein (putative dehydratase
           activating enzyme) [Proteus mirabilis HI4320]
          Length = 316

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           + C+ C    CV+VCP    Y      G+    +    +CI C  CE  C  DA+    +
Sbjct: 58  DKCVDC--GKCVDVCPAGVHYMTTNEQGQQVHRVDRAVDCIGCRKCEEVCLSDALDIMGK 115

Query: 61  P 61
            
Sbjct: 116 D 116


>gi|170289697|ref|YP_001736513.1| putative ATPase RIL [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173777|gb|ACB06830.1| ABC transporter related [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 591

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 2  TYVVTENCI--LCKHTDCVEVCP-VDCFYEGENFLA-----IHPDECIDCGVCEPECPVD 53
            V  + C    C   +C++ CP V    E    L      I    C  CG+C  +CP  
Sbjct: 7  AVVDRDRCNPKKCGL-ECIKYCPEVRMGVEDTIKLVDSTLIIDEKLCTGCGICVKKCPFG 65

Query: 54 AI 55
          AI
Sbjct: 66 AI 67


>gi|114777369|ref|ZP_01452366.1| NADH dehydrogenase subunit I [Mariprofundus ferrooxydans PV-1]
 gi|114552151|gb|EAU54653.1| NADH dehydrogenase subunit I [Mariprofundus ferrooxydans PV-1]
          Length = 160

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 58  EERCIACKL--CEVICPAVAILIESAERDDGSRRTTRYDIDFSKCIYCGLCQEACPVDAI 115


>gi|325262535|ref|ZP_08129272.1| ferredoxin 2 [Clostridium sp. D5]
 gi|324032367|gb|EGB93645.1| ferredoxin 2 [Clostridium sp. D5]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  C V           I  D CI+CG C   CP +A
Sbjct: 10 KCRHCYK--CVRYCMVKAISVQNEQAHILKDHCINCGRCMEICPQNA 54


>gi|317968123|ref|ZP_07969513.1| NADH dehydrogenase subunit I [Synechococcus sp. CB0205]
          Length = 198

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|304310833|ref|YP_003810431.1| 4fe-4s ferredoxin, iron-sulfur binding protein [gamma
           proteobacterium HdN1]
 gi|301796566|emb|CBL44778.1| 4fe-4s ferredoxin, iron-sulfur binding protein [gamma
           proteobacterium HdN1]
          Length = 478

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV+VCP                ECI C  C   C     + +   GL  +  
Sbjct: 277 CVDC--QLCVQVCPTGIDIRNGLQY-----ECIGCAACIDACDSIMDQMNYPRGLIRYST 329

Query: 69  INS 71
            N 
Sbjct: 330 ENR 332


>gi|300692634|ref|YP_003753629.1| 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum PSI07]
 gi|299079694|emb|CBJ52371.1| 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum PSI07]
          Length = 82

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPVD 
Sbjct: 1  MALIITDECINCD--VCEPECPNGAISMGPEIYVIDPGKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|326790371|ref|YP_004308192.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium lentocellum DSM 5427]
 gi|326541135|gb|ADZ82994.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium lentocellum DSM 5427]
          Length = 575

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI C    C+++ CP  C  +GE  ++I+   C  CG+C   CP  AI  +
Sbjct: 525 ETCIKC--GMCLKLGCPAIC--KGEEGISINTALCAGCGLCASVCPKQAISKE 573


>gi|260945002|ref|XP_002616799.1| hypothetical protein CLUG_04040 [Clavispora lusitaniae ATCC
          42720]
 gi|238850448|gb|EEQ39912.1| hypothetical protein CLUG_04040 [Clavispora lusitaniae ATCC
          42720]
          Length = 618

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    CK  +C + CPV                  I    C+ CG+C  +CP DA
Sbjct: 21 VSTDKCKPKKCK-QECRKSCPVVKTGKLCIEVTPASKIAFISETLCVGCGICVKKCPFDA 79

Query: 55 IK 56
          I 
Sbjct: 80 IN 81


>gi|237718617|ref|ZP_04549098.1| ferredoxin-type protein [Bacteroides sp. 2_2_4]
 gi|229452077|gb|EEO57868.1| ferredoxin-type protein [Bacteroides sp. 2_2_4]
          Length = 514

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 1   MTYVV--TENCI----LCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPE 49
           M YVV   ENCI          C E CP        + +G     ++ + C+ CG CE  
Sbjct: 417 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 476

Query: 50  C---PVDAIKPDTEPGLEL 65
           C   P  AI  +  P  + 
Sbjct: 477 CPARPFRAIYIEGNPVQKE 495



 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + T  C  C    C   C   C    E   AI    C+DC  C   C   A+        
Sbjct: 221 IDTAKCNGC--GLCATKCKAACINSKE--HAIDYSRCVDCFNCLGVCKQKALVYAPSLKK 276

Query: 64  ELWLK 68
           +  ++
Sbjct: 277 QSDVE 281


>gi|227828775|ref|YP_002830555.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.14.25]
 gi|229585982|ref|YP_002844484.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.27]
 gi|238620967|ref|YP_002915793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.4]
 gi|227460571|gb|ACP39257.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.14.25]
 gi|228021032|gb|ACP56439.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.27]
 gi|238382037|gb|ACR43125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.4]
 gi|323475842|gb|ADX86448.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus REY15A]
 gi|323478584|gb|ADX83822.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus HVE10/4]
          Length = 89

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ C+ CK   C +VCP   +    +  + +H + C++CG     CP  AIK     G
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIIVHYERCLECGAALVACPYGAIKFRFPEG 82

Query: 63 LELW 66
             +
Sbjct: 83 GISY 86


>gi|224825660|ref|ZP_03698764.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella
           nitroferrum 2002]
 gi|224601884|gb|EEG08063.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella
           nitroferrum 2002]
          Length = 232

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
             +  ++CI C  T C++ CPVD      +    +   EC  C +C   CPVD I
Sbjct: 79  AVIQEDSCIGC--TLCIQACPVDAIVGAAKLMHTVIAAECTGCELCVAPCPVDCI 131


>gi|239816475|ref|YP_002945385.1| NADH dehydrogenase subunit I [Variovorax paradoxus S110]
 gi|239803052|gb|ACS20119.1| NADH-quinone oxidoreductase, chain I [Variovorax paradoxus S110]
          Length = 181

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 79  EERCIACKL--CEAVCPALAITIESDVRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 136


>gi|110287696|sp|Q2QD37|NDHI_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|74027152|gb|AAZ94702.1| NADH dehydrogenase 18 kDa subunit [Cucumis sativus]
 gi|115432854|gb|ABI97467.1| NADH-plastoquinone oxidoreductase subunit I [Cucumis sativus]
 gi|115498356|gb|ABI98798.1| NADH-plastoquinone oxidoreductase subunit I [Cucumis sativus]
          Length = 160

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|39996838|ref|NP_952789.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           sulfurreducens PCA]
 gi|39983726|gb|AAR35116.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sulfurreducens PCA]
 gi|307634913|gb|ADI84576.2| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sulfurreducens KN400]
          Length = 585

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 4   VVTENCILCKHTDCVEV-CPVD----CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  ++C  CK   C+++ CP           +    I P  C  C VC   C  +AI
Sbjct: 527 VDQDHCTGCK--ACLKIGCPAIEWIPAPDGKKGKAKIDPLLCNGCDVCRQLCKFNAI 581


>gi|290790889|gb|ADD63145.1| NADH-plastoquinone oxidoreductase subunit I [Microlaena stipoides]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|315657371|ref|ZP_07910253.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491843|gb|EFU81452.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 245

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 18/75 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 98  EKCVGCEL--CAWACPADAIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEAC 155

Query: 51  PVDAIKPDTEPGLEL 65
           P  A+    +  +  
Sbjct: 156 PTRALTMSNDYEIWD 170


>gi|301060225|ref|ZP_07201092.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445737|gb|EFK09635.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 651

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 3   YVVTENC-ILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP--VDAIKPD 58
           Y+  + C   C    CV  CPV+  +   N    I    C+ CG C   CP   DA+   
Sbjct: 570 YIDLDKCARGCD--ACVGCCPVEAIFTTPNRKKGIDQKLCVKCGECVTACPPEYDAVVKV 627

Query: 59  TEPGLELWLKINSE 72
           + P L   ++  +E
Sbjct: 628 SPPHLAPIVERPAE 641


>gi|299068050|emb|CBJ39264.1| 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum CMR15]
          Length = 82

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVEC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPHD 62


>gi|262400772|gb|ACY66261.1| NADH dehydrogenase subunit I [Brassica napus]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|262166805|ref|ZP_06034542.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio mimicus VM223]
 gi|262026521|gb|EEY45189.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio mimicus VM223]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 275 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 325


>gi|262172802|ref|ZP_06040480.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio mimicus MB-451]
 gi|261893878|gb|EEY39864.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio mimicus MB-451]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 275 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 325


>gi|224370158|ref|YP_002604322.1| putative fusion protein GlcF/heterodisulfide reductase HdrA
           [Desulfobacterium autotrophicum HRM2]
 gi|223692875|gb|ACN16158.1| putative fusion protein GlcF/heterodisulfide reductase HdrA
           [Desulfobacterium autotrophicum HRM2]
          Length = 314

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T V   +C+ C    CV  CP +        +     +C  CG+C   CP  AI      
Sbjct: 110 TTVTNTDCVACL--ACVRACPHEARLFVNGKIVTDTVKCQSCGICVDICPNKAISTSLSY 167

Query: 62  GLELWLKINSEYATQWPNITTK 83
           G      +N E        T+K
Sbjct: 168 GTNR-PALNQEIGEFLEKETSK 188


>gi|163803326|ref|ZP_02197204.1| potassium transporter peripheral membrane component [Vibrio sp.
           AND4]
 gi|159172896|gb|EDP57735.1| potassium transporter peripheral membrane component [Vibrio sp.
           AND4]
          Length = 473

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 274 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 324


>gi|126659017|ref|ZP_01730158.1| NADH dehydrogenase subunit I [Cyanothece sp. CCY0110]
 gi|126619674|gb|EAZ90402.1| NADH dehydrogenase subunit I [Cyanothece sp. CCY0110]
          Length = 196

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPV-----------DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+           D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWEFNKDAKKKELKHYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELAAYDRHELN 136


>gi|94265001|ref|ZP_01288771.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454548|gb|EAT04829.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 668

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  + C+ C +  CV +CP D     +    +  + C+ CG+C   CP  AI
Sbjct: 491 ATVQNDYCVKCLN--CVRLCPYDAPRI-DRTARVPAEHCLACGLCYGACPTGAI 541


>gi|78708690|gb|ABB47665.1| retrotransposon protein, putative, unclassified, expressed [Oryza
          sativa Japonica Group]
 gi|78708691|gb|ABB47666.1| retrotransposon protein, putative, unclassified, expressed [Oryza
          sativa Japonica Group]
          Length = 1682

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  + C    C   +C   CPV      F    +   I  + CI CG+C  +CP  AI
Sbjct: 11 AVVDEDRCKPNKC-GQECRRSCPVVKIDLTFRVVGSIALISEELCIGCGICVKKCPFGAI 69



 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           E CI C    CV+ CP            +  D     G 
Sbjct: 51 EELCIGC--GICVKKCPFGAITIINLPKELDKDTTHRFGQ 88


>gi|15678308|ref|NP_275423.1| coenzyme F420-reducing hydrogenase, beta subunit-like protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621331|gb|AAB84786.1| coenzyme F420-reducing hydrogenase, beta subunit homolog
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 689

 Score = 42.3 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C    C EVC V+             D C+ CG C   CP  A
Sbjct: 562 EDLCNGC--GRCEEVCKVEAVSVRGETSYTSYDLCVGCGKCIKSCPHSA 608


>gi|308163098|gb|EFO65459.1| Nitroreductase Fd-NR2 [Giardia lamblia P15]
          Length = 264

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKP 57
          T+ C  C    CVEVCP            +   + D CI CG C   CP  +I  
Sbjct: 10 TDTCTGCNM--CVEVCPTAVLKVDPETKVVAYANRDNCIFCGHCGAICPTGSISM 62


>gi|257791340|ref|YP_003181946.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257475237|gb|ACV55557.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 204

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVD 53
           Y +   C  C++  C+EVCP    Y  E      ++ +ECI C  C   CP +
Sbjct: 52  YWIPLQCQQCENPGCIEVCPTGASYRDEATGVVLVNAEECIGCESCLKGCPYN 104


>gi|254172180|ref|ZP_04878856.1| ATPase, ParA/MinD family (ferredoxin domain) [Thermococcus sp. AM4]
 gi|214034076|gb|EEB74902.1| ATPase, ParA/MinD family (ferredoxin domain) [Thermococcus sp. AM4]
          Length = 296

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECP 51
           +  E+CI C    C E CP +  Y  E+    ++   C  C VC   CP
Sbjct: 66  INPESCIRC--GICYERCPYESIYIDEDGNYVVNELTCEGCNVCGLVCP 112


>gi|254382434|ref|ZP_04997793.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces sp. Mg1]
 gi|194341338|gb|EDX22304.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces sp. Mg1]
          Length = 201

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------------FLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 60  EKCIGCEL--CAWACPADAIYVEGADNTEEERYSPGERYGAVYQINYARCILCGLCIEAC 117

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 118 PTRALTM 124


>gi|149390405|ref|YP_001294404.1| NADH dehydrogenase subunit I [Dioscorea elephantipes]
 gi|156632612|sp|A6MMQ9|NDHI_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|148668097|gb|ABR01481.1| NADH-plastoquinone oxidoreductase subunit I [Dioscorea
           elephantipes]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLEKNIKKKQLLNYSIDFGFCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016]
 gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 320

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 3   YVVTENCILCKHTD--CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  + C+ C      C   C    F +      I   +CI CG C   C  DAI
Sbjct: 266 YIDKDKCMGCNLCKKNCDSNCITGEFKK---PHEIDESKCIRCGNCIDICRFDAI 317


>gi|124485800|ref|YP_001030416.1| hypothetical protein Mlab_0979 [Methanocorpusculum labreanum Z]
 gi|124363341|gb|ABN07149.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 428

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 21/87 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           Y+  + C  C   DC+ +CP++ + + +                    +      CI+CG
Sbjct: 98  YINEKECTGC--GDCITICPIEVYNKFDAGIGVRKAIYKPHAQSIPNIVVKDNLHCIECG 155

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINS 71
           +C   C  DA+   TE  +E  L+IN+
Sbjct: 156 LCYGVCGKDAVLKVTEAKVET-LEINA 181


>gi|40846370|gb|AAR92475.1| nitrite oxidoreductase beta subunit [Nitrobacter sp. PBAB17]
          Length = 513

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|75300873|sp|Q8HVR5|NDHI_HULAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460598|gb|AAN61739.1| NADH dehydrogenase subunit I [Hulsea algida]
          Length = 166

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|73666986|ref|YP_303002.1| NADH dehydrogenase subunit I [Ehrlichia canis str. Jake]
 gi|115502528|sp|Q3YSA1|NUOI_EHRCJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|72394127|gb|AAZ68404.1| NADH dehydrogenase subunit I [Ehrlichia canis str. Jake]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 65  EERCIACKL--CEAICPAQAITIEAQERDDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 122


>gi|300113273|ref|YP_003759848.1| NADH-quinone oxidoreductase subunit I [Nitrosococcus watsonii
           C-113]
 gi|299539210|gb|ADJ27527.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus watsonii C-113]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIDSEQRDDGTRRTTRYDIDLFKCIYCGFCEESCPVDSI 117


>gi|300690753|ref|YP_003751748.1| 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07]
 gi|299077813|emb|CBJ50451.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07]
          Length = 708

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +  + C  C    C++VCP D     +    I  D C D   C   C
Sbjct: 195 IDLDRCTHCN--ACIDVCPEDAI---DTLYQIDLDACRDHRDCVKAC 236



 Score = 41.1 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV  CP     +        +    C+ CG+CE  CP DAI
Sbjct: 575 VDRERCTLC--MACVSACPSQALRDQAERPVLSMIERNCVQCGLCETTCPEDAI 626



 Score = 36.9 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 10  ILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C    CV VC        + +G   + + P+ C+ CG C   CP  A+     
Sbjct: 323 VGCD--ACVRVCSAAAITSQWKDGRGSVHVTPNLCVGCGACTTACPTGALTYAYP 375


>gi|239905180|ref|YP_002951919.1| quinone-interacting membrane-bound oxidoreductase complex subunit B
           [Desulfovibrio magneticus RS-1]
 gi|239795044|dbj|BAH74033.1| quinone-interacting membrane-bound oxidoreductase complex subunit B
           [Desulfovibrio magneticus RS-1]
          Length = 763

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
            C  CK   C E CP     + E      +P  C  CG C   CP   I  D
Sbjct: 555 RCTQCK--RCTEECPFGALDDDEKGTPKPNPTRCRRCGTCMGACPERVISFD 604


>gi|156573661|gb|ABU85164.1| NADH-plastoquinone oxidoreductase subunit I [Anethum graveolens]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|218781586|ref|YP_002432904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762970|gb|ACL05436.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 284

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V E+C  C    CVE C           +  + D C  C  C   C   A
Sbjct: 209 VEESCKDC--GMCVENCTTGSISSVNGKITTNHDTCYRCYQCLWMCKFQA 256


>gi|156089325|ref|XP_001612069.1| ABC transporter, ATP-binding domain containing protein [Babesia
          bovis]
 gi|154799323|gb|EDO08501.1| ABC transporter, ATP-binding domain containing protein [Babesia
          bovis]
          Length = 616

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C   CPV                  I    CI CG+C  +CP +A
Sbjct: 25 VSTDKCKPKKCR-QECKRNCPVAKAGKQCIIADPTSKIAFISETLCIGCGICVKKCPFEA 83

Query: 55 I 55
          I
Sbjct: 84 I 84


>gi|149926432|ref|ZP_01914693.1| putative iron-sulfur binding protein [Limnobacter sp. MED105]
 gi|149824795|gb|EDM84009.1| putative iron-sulfur binding protein [Limnobacter sp. MED105]
          Length = 704

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C    C++ C           + ++P  C+ CG C   CP  AI+    P
Sbjct: 327 GCN--SCIDACSTKAIKSAGEKIEVNPHLCLGCGACTTVCPTGAIQFALSP 375



 Score = 40.7 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPDT 59
           V  E C  C    CV+ CP     +    L I  + C   G C   C    AI    
Sbjct: 199 VDMEMCTRC--GACVDACPTQSISKES--LTIDLNSCDQSGACIKACGDFKAISFAD 251



 Score = 37.7 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           V  + C LC    C   CP     +      L      C+ CG+C   CP +A++
Sbjct: 569 VNKDKCTLC--MSCTSACPASALIDNPEMPQLRFIERNCVQCGLCVETCPENAMQ 621


>gi|91782519|ref|YP_557725.1| ferredoxin [Burkholderia xenovorans LB400]
 gi|91686473|gb|ABE29673.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           xenovorans LB400]
          Length = 279

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
             +  + CI C  T C++ CPVD           +  + C  C +C P CPVD I
Sbjct: 82  AVIDEQVCIGC--TLCMQACPVDAIVGAPKQMHTVIAELCTGCDLCVPPCPVDCI 134


>gi|75674972|ref|YP_317393.1| nitrate reductase, beta subunit [Nitrobacter winogradskyi Nb-255]
 gi|74419842|gb|ABA04041.1| respiratory nitrate reductase beta subunit [Nitrobacter
           winogradskyi Nb-255]
          Length = 513

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 188 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 240


>gi|15668691|ref|NP_247490.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|48474788|sp|Q57934|Y514_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514
 gi|1591217|gb|AAB98503.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 250

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V    C+ C    C+E CP++   +  + + I+ D+CI CG C   CP +AIK 
Sbjct: 195 VDKNLCVGCL--VCIEECPINAIDQDGDKVKINKDKCILCGRCVDVCPTNAIKM 246



 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    C   CP +         + ++ D C+ CG C   CP   IK + E
Sbjct: 133 CIKC--GICARFCPTNAIKAVRRKSIEVNLDLCMGCGACAEVCPKKCIKVERE 183



 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
          Y+    CI C    C + CPVD   + +      I  D+C+ C +C   CPV AI 
Sbjct: 41 YINETKCIRCNL--CYKECPVDAIEKAKVKKSAKIIEDKCVKCEICAQTCPVGAIY 94


>gi|309776013|ref|ZP_07671005.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916295|gb|EFP62043.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 202

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + + C+ C    C+  CP  C   G+ ++ I    C+ CG+C   CPV AI
Sbjct: 149 FQILDACVQC--GSCLRSCPQQCIETGQPYI-IVQKNCLHCGLCAEVCPVHAI 198


>gi|308271652|emb|CBX28260.1| hypothetical protein N47_G35840 [uncultured Desulfobacterium sp.]
          Length = 1087

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 9    CILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C  C    CV +CP       E           I+P  C  CG+C   C   AI+     
Sbjct: 1015 CSSC--GVCVSICPYSAPSFIEESARFFPGKAQINPVLCKGCGLCVASCRSGAIRLKGFD 1072

Query: 62   GLELWLKI 69
              +++ +I
Sbjct: 1073 NDQIFAQI 1080


>gi|291285965|ref|YP_003502781.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883125|gb|ADD66825.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM
           12809]
          Length = 165

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 12/63 (19%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C    C +VCP +C +                 +    CI CG CE  CPVDAI  
Sbjct: 60  KCVGCYL--CQKVCPSECIHIETDCGPNGERLIRKYELDLSRCIYCGYCEEVCPVDAIHM 117

Query: 58  DTE 60
             E
Sbjct: 118 GWE 120


>gi|123406266|ref|XP_001302760.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|123470791|ref|XP_001318599.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121884080|gb|EAX89830.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121901362|gb|EAY06376.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
          Length = 811

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 9   CILCKHTDCVEVC---PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    C   C    V+  +  +    ++ DECI C +C   CPV A+        + 
Sbjct: 748 CLQC--GKCALSCRDNSVEAIHLVDGKWKVNHDECIGCALCHSVCPVQAMHMVESEKRKN 805

Query: 66  W 66
           W
Sbjct: 806 W 806


>gi|121535727|ref|ZP_01667530.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305692|gb|EAX46631.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 147

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T  C  C    C  VC             L+ HPD+CI CG+C   CPV AI+ 
Sbjct: 81  VDTGRCTHC--GACTAVCFSRALVLERPTWELSFHPDKCIVCGLCVQACPVRAIRQ 134


>gi|94987618|ref|YP_595551.1| nitroreductase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731867|emb|CAJ55230.1| nitroreductase [Lawsonia intracellularis PHE/MN1-00]
          Length = 259

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIKPD 58
          CI C    CV+VCPV         + I  +    C+ CG C   CP  A+  D
Sbjct: 10 CIQC--GQCVKVCPVSILVRRSKNIIIKNNRLSHCLHCGHCVAICPRSALTLD 60


>gi|77166015|ref|YP_344540.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|254436315|ref|ZP_05049821.1| NADH-quinone oxidoreductase, chain I subfamily [Nitrosococcus
           oceani AFC27]
 gi|115502512|sp|Q3J836|NUOI2_NITOC RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|76884329|gb|ABA59010.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|207088005|gb|EDZ65278.1| NADH-quinone oxidoreductase, chain I subfamily [Nitrosococcus
           oceani AFC27]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIDSEQREDGTRRTTRYDIDLFKCIYCGFCEESCPVDSI 117


>gi|20093531|ref|NP_613378.1| putative ATPase RIL [Methanopyrus kandleri AV19]
 gi|19886372|gb|AAM01308.1| Predicted ABC-class ATPase, RNase L inhibitor homolog
          [Methanopyrus kandleri AV19]
          Length = 599

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 2  TYVVTENCIL---CKHTDCVEVCP-------VDCFYEGENFLAIHPDECIDCGVCEPECP 51
            V  E C     C +  C   CP            E  N   I  + C  CG+C  +CP
Sbjct: 9  AVVDRERCKGGSKCDY-VCQRFCPGVRTGRETITIDEDTNKPVISEELCSGCGICAQKCP 67

Query: 52 VDAI 55
           DAI
Sbjct: 68 FDAI 71


>gi|15806509|ref|NP_295220.1| NADH dehydrogenase I subunit I [Deinococcus radiodurans R1]
 gi|81789326|sp|Q9RU95|NUOI_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|6459254|gb|AAF11060.1|AE001993_10 NADH dehydrogenase I, I subunit [Deinococcus radiodurans R1]
          Length = 178

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C    C   CP    Y                       I+   CI CG+CE  C
Sbjct: 52  EKCIGCSL--CAAACPAYAIYVEAAENDPRDPVSPGERYAKVYEINMLRCIFCGLCEEAC 109

Query: 51  PVDAIKPDTEPGLELW 66
           P  A+    E  +  +
Sbjct: 110 PTGAVVLGNEFEMADY 125


>gi|11465802|ref|NP_053946.1| hypothetical protein PopuCp151 [Porphyra purpurea]
 gi|1723405|sp|P51336|YCXI_PORPU RecName: Full=Uncharacterized protein in rpl9-rpl11 intergenic
          region; AltName: Full=ORF75
 gi|1276802|gb|AAC08222.1| ORF75 [Porphyra purpurea]
          Length = 75

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENF-------LAIHPDECIDCGVCEPECPV 52
          M++ +VTE CI     +CV  CPV C ++GE           I    CIDC +C   CP 
Sbjct: 1  MSHTIVTEKCIG--VAECVNACPVSCIHKGEGKNTINKDWYWIDFAACIDCSICIQVCPT 58

Query: 53 DAIKPDTEPG 62
               D E  
Sbjct: 59 KGAILDKEEP 68


>gi|159902717|ref|YP_001550061.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9211]
 gi|226724532|sp|A9BD19|NDHI_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|159887893|gb|ABX08107.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9211]
          Length = 215

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|46201705|ref|ZP_00054515.2| COG4231: Indolepyruvate ferredoxin oxidoreductase, alpha and beta
           subunits [Magnetospirillum magnetotacticum MS-1]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 16/78 (20%)

Query: 2   TY-VVTENCILCKHTDCVEV-CPVDCFYEGENFL------------AIHPDECIDCGVCE 47
            Y VV E+C  C   +C+ V CP       E+ +             I    C  C +C 
Sbjct: 554 PYKVVDEDCTGC--GNCINVGCPAITVKRSESKVRPDGKVNELKFTTIDTAMCTGCNMCV 611

Query: 48  PECPVDAIKPDTEPGLEL 65
             C   AI          
Sbjct: 612 ESCGPKAIVKAKPAVAAE 629


>gi|320037261|gb|EFW19199.1| ABC transporter [Coccidioides posadasii str. Silveira]
          Length = 604

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV                  I    CI CG+C  +CP  A
Sbjct: 11 VNSDKCKPKKCR-QECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGA 69

Query: 55 IK 56
          I 
Sbjct: 70 IH 71


>gi|299131969|ref|ZP_07025164.1| formate dehydrogenase, beta subunit [Afipia sp. 1NLS2]
 gi|298592106|gb|EFI52306.1| formate dehydrogenase, beta subunit [Afipia sp. 1NLS2]
          Length = 312

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +     D+CI CG C   CP +
Sbjct: 109 KDGCMHCEDPGCLKACPAPGAIVQYSNGIVDFVHDKCIGCGYCIKGCPFN 158



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLA-----IHPDECIDCGVCEPECPVDAIK 56
            V + CI C +  C++ CP +     + ++ +      +          C+  CP  AI 
Sbjct: 140 FVHDKCIGCGY--CIKGCPFNIPRLSKADSKVYKCTLCVDRVAVGQGPACQKACPTQAIV 197

Query: 57  PDTEPGLELWLK 68
             T+  ++ W  
Sbjct: 198 FGTKDEMKQWAD 209


>gi|297527527|ref|YP_003669551.1| ABC transporter related protein [Staphylothermus hellenicus DSM
          12710]
 gi|297256443|gb|ADI32652.1| ABC transporter related protein [Staphylothermus hellenicus DSM
          12710]
          Length = 601

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECP 51
            V  E C    C   +C+  CPV+                  I+ D CI CG+C  +CP
Sbjct: 5  AVVDREYCKPNKCNL-ECIRFCPVNKTKHKKAIELSPDGKHAVIYEDICIGCGICVKKCP 63

Query: 52 VDAI 55
           +AI
Sbjct: 64 FNAI 67


>gi|283851312|ref|ZP_06368594.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio
           sp. FW1012B]
 gi|283573262|gb|EFC21240.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio
           sp. FW1012B]
          Length = 765

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
            C  CK   C E CP     + E      +P  C  CG C   CP   I  D
Sbjct: 557 RCTQCK--RCTEECPFGALDDDEKGTPKPNPTRCRRCGTCMGACPERVISFD 606


>gi|153940864|ref|YP_001392201.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
          Langeland]
 gi|152936760|gb|ABS42258.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
          Langeland]
 gi|295320199|gb|ADG00577.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
          230613]
          Length = 247

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  E C  C    CV  C        +     I  + C   G C PECP  AIK      
Sbjct: 8  IDKEKCNGC--GLCVTACHEGAIELIDGRAVLISDEYCDGLGDCLPECPTGAIKIVEREA 65

Query: 63 LELWLKINSEYATQWPNITTKKESLP 88
           E   ++  +      ++   KE +P
Sbjct: 66 AEYNEELVEKRMAMKKSVEENKEKMP 91


>gi|139390403|ref|YP_001123000.1| NADH dehydrogenase subunit [Aethionema cordifolium]
 gi|156632602|sp|A4QJH0|NDHI_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286196|dbj|BAF49825.1| NADH dehydrogenase subunit [Aethionema cordifolium]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETPIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|118430357|ref|YP_874791.1| NADH-plastoquinone oxidoreductase subunit I [Agrostis stolonifera]
 gi|125952727|sp|A1EA63|NDHI_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|118201266|gb|ABK79635.1| NADH-plastoquinone oxidoreductase subunit I [Agrostis stolonifera]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP   +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|120602028|ref|YP_966428.1| glycyl-radical activating family protein [Desulfovibrio vulgaris
          DP4]
 gi|120562257|gb|ABM28001.1| glycyl-radical enzyme activating protein family [Desulfovibrio
          vulgaris DP4]
          Length = 297

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CVEVCP       +  +     +C  CG C   CP  A
Sbjct: 55 CTGC--GKCVEVCPEGAARIVDGKVIRSIAKCTHCGQCTASCPAKA 98


>gi|118475180|ref|YP_891369.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. fetus 82-40]
 gi|261886061|ref|ZP_06010100.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. venerealis str. Azul-94]
 gi|156633515|sp|A0RMD6|NUOI_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118414406|gb|ABK82826.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 165

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 13/63 (20%)

Query: 8   NCILCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C+ C    C   CP +C +           +  +   I   EC+ CG+C   CP DAI+
Sbjct: 77  KCVACDM--CATACPANCIFITATEIEGSKEKAPSKFTIDLLECVFCGLCVEACPKDAIR 134

Query: 57  PDT 59
            DT
Sbjct: 135 MDT 137


>gi|147676934|ref|YP_001211149.1| ferredoxin-like protein [Pelotomaculum thermopropionicum SI]
 gi|146273031|dbj|BAF58780.1| ferredoxin-like protein [Pelotomaculum thermopropionicum SI]
          Length = 91

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TE C  C H  C+  CP  C+    EN +A H + C++CG C   C   A+K    
Sbjct: 24 DTEKCRACLHRACLAACPARCYLPHPENGVAFHYEHCLECGTCFLICDHGALKWHYP 80


>gi|75755713|ref|YP_319817.1| NADH dehydrogenase subunit I [Acorus calamus]
 gi|161622363|ref|YP_001586235.1| NADH dehydrogenase subunit I [Acorus americanus]
 gi|110287694|sp|Q3V4Y0|NDHI_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|74381763|emb|CAI53848.1| NADH dehydrogenase 18kD subunit [Acorus calamus]
 gi|156573621|gb|ABU85146.1| NADH-plastoquinone oxidoreductase subunit I [Acorus americanus]
 gi|160369906|gb|ABX38797.1| NADH-plastoquinone oxidoreductase subunit I [Acorus americanus]
          Length = 179

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRLDTDVRKKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|116754476|ref|YP_843594.1| thiamine pyrophosphate binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116665927|gb|ABK14954.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Methanosaeta thermophila PT]
          Length = 594

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 3   YVVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C+ C+   C+E  CP     E +   +I+   C  CGVC   CP  AI
Sbjct: 543 YRVTDECVGCR--QCLEFDCPAI---EFDEKASINQ-LCTGCGVCAQICPKGAI 590


>gi|307546575|ref|YP_003899054.1| ferredoxin [Halomonas elongata DSM 2581]
 gi|307218599|emb|CBV43869.1| ferredoxin [Halomonas elongata DSM 2581]
          Length = 82

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D    GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MALMITDECINCD--VCEPECPNDAISPGEEIYIIDPNRCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D     E   ++  +Y
Sbjct: 59 IPLD-PERQESRDELMEKY 76


>gi|326790345|ref|YP_004308166.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           lentocellum DSM 5427]
 gi|326541109|gb|ADZ82968.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           lentocellum DSM 5427]
          Length = 258

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V+  C  C    C +VCPV+     E  +      C  C  C   CP  AI+ 
Sbjct: 174 FTVSNLCNHC--GTCSKVCPVENIIVEEAEIQF-QHHCEHCLACIHACPQVAIEW 225


>gi|331649744|ref|ZP_08350824.1| formate dehydrogenase, beta subunit [Escherichia coli M605]
 gi|281180960|dbj|BAI57290.1| formate dehydrogenase iron-sulfur subunit [Escherichia coli SE15]
 gi|330908215|gb|EGH36734.1| formate dehydrogenase O beta subunit [Escherichia coli AA86]
 gi|331041377|gb|EGI13527.1| formate dehydrogenase, beta subunit [Escherichia coli M605]
          Length = 300

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +     +CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|258626105|ref|ZP_05720956.1| FixG-related protein [Vibrio mimicus VM603]
 gi|258581631|gb|EEW06529.1| FixG-related protein [Vibrio mimicus VM603]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 275 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 325


>gi|253996808|ref|YP_003048872.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
 gi|253983487|gb|ACT48345.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
          Length = 476

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCPV               ECI CG+C   C     K +   GL  +  
Sbjct: 271 CIDCNF--CVQVCPVGIDIRNGLQY-----ECISCGLCVDACNSIMDKMNYSRGLIRFTT 323

Query: 69  INSEYATQW 77
            N   A  W
Sbjct: 324 QNG-LAQHW 331


>gi|269791990|ref|YP_003316894.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099625|gb|ACZ18612.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 57

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  + C+ C+   CV VCP       +    ++PD C++CG C   CPV AI
Sbjct: 4  AVVDKDTCVGCE--ACVGVCPTSAISMVDGKAEVNPDACVECGACVATCPVSAI 55


>gi|261378974|ref|ZP_05983547.1| ferredoxin [Neisseria cinerea ATCC 14685]
 gi|296315172|ref|ZP_06865113.1| ferredoxin [Neisseria polysaccharea ATCC 43768]
 gi|269144589|gb|EEZ71007.1| ferredoxin [Neisseria cinerea ATCC 14685]
 gi|296837981|gb|EFH21919.1| ferredoxin [Neisseria polysaccharea ATCC 43768]
          Length = 83

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P  C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCD--VCEPECPNDAISQGEEIYEINPSLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 ILID-EEHPETHDELMAKY 76


>gi|225412237|ref|ZP_03761426.1| hypothetical protein CLOSTASPAR_05459 [Clostridium asparagiforme
           DSM 15981]
 gi|225042255|gb|EEG52501.1| hypothetical protein CLOSTASPAR_05459 [Clostridium asparagiforme
           DSM 15981]
          Length = 173

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C+ C    CV  CP  C  +  E  L I     CI C  C   CP      + E  
Sbjct: 57  ISIACMHCTDAPCVTACPCACIRKDAETGLTIYDNASCIGCHSCAMACPFGIPAFNEEGR 116

Query: 63  LEL 65
           ++ 
Sbjct: 117 MQK 119


>gi|206895851|ref|YP_002247250.1| NADH dehydrogenase subunit [Coprothermobacter proteolyticus DSM
          5265]
 gi|206738468|gb|ACI17546.1| NADH dehydrogenase subunit [Coprothermobacter proteolyticus DSM
          5265]
          Length = 183

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 7/61 (11%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAIKPDT 59
            E+C  C+   C  VCP       +         I    CI C  C   CP  A+  D 
Sbjct: 41 DAEDCTGCR--QCERVCPPGAITIEDKKGEFFHYKIDYGVCIYCWYCIDACPTTALTGDD 98

Query: 60 E 60
          +
Sbjct: 99 K 99


>gi|182417631|ref|ZP_02948950.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237667596|ref|ZP_04527580.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378355|gb|EDT75886.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237655944|gb|EEP53500.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 253

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +NC  C    C ++CP +     +N    +  +CIDC  C   CP  AI 
Sbjct: 181 NDNCNGC--GICTKICPTENISIIDNKPKWN-GKCIDCMACINICPKKAIN 228


>gi|134094633|ref|YP_001099708.1| putative iron-sulfur binding protein [Herminiimonas arsenicoxydans]
 gi|133738536|emb|CAL61581.1| putative ferredoxin [Herminiimonas arsenicoxydans]
          Length = 699

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPDTEPG 62
           +  E+CI C    C+EVCP       +    I  D+C   G C   C  + AI       
Sbjct: 196 IDLESCIRCN--ACIEVCPESAI---DLTYQIDLDKCRSHGDCVKACGSIGAINFARGEL 250

Query: 63  LELWLKINSEY 73
                + N E+
Sbjct: 251 AGA-NERNGEF 260



 Score = 41.5 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           I C    C+E+C  +      N + ++P+ C  CG C   CP  A+        +
Sbjct: 326 IGCN--ACIEICSAEAISHNGNHVKVNPNLCAGCGACTTVCPSGAMAYAYPRTED 378



 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
             VV  + C LC    CV  CP     +      L      C+ CG+CE  CP +AI
Sbjct: 562 AVVVNRDACTLC--MSCVGACPESALTDNANAPQLRFIEKNCVQCGLCEKTCPENAI 616


>gi|15676051|ref|NP_273181.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis MC58]
 gi|59802180|ref|YP_208892.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|121634001|ref|YP_974246.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|194099902|ref|YP_002003039.1| 4Fe-4S ferrodoxin [Neisseria gonorrhoeae NCCP11945]
 gi|239997905|ref|ZP_04717829.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae 35/02]
 gi|240015115|ref|ZP_04722028.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae DGI18]
 gi|240017564|ref|ZP_04724104.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae FA6140]
 gi|240081707|ref|ZP_04726250.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae FA19]
 gi|240113983|ref|ZP_04728473.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae MS11]
 gi|240116719|ref|ZP_04730781.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID18]
 gi|240118941|ref|ZP_04733003.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID1]
 gi|240122186|ref|ZP_04735148.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID24-1]
 gi|240124479|ref|ZP_04737435.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID332]
 gi|240124653|ref|ZP_04737539.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          SK-92-679]
 gi|240129154|ref|ZP_04741815.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          SK-93-1035]
 gi|254494740|ref|ZP_05107911.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|254805831|ref|YP_003084052.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|260439522|ref|ZP_05793338.1| putative ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|261400047|ref|ZP_05986172.1| ferredoxin [Neisseria lactamica ATCC 23970]
 gi|268593756|ref|ZP_06127923.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|268597805|ref|ZP_06131972.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268600048|ref|ZP_06134215.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268602390|ref|ZP_06136557.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268604652|ref|ZP_06138819.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268683110|ref|ZP_06149972.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268683227|ref|ZP_06150089.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268687537|ref|ZP_06154399.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291042757|ref|ZP_06568498.1| ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|293398224|ref|ZP_06642429.1| ferredoxin [Neisseria gonorrhoeae F62]
 gi|304388924|ref|ZP_07370971.1| ferredoxin [Neisseria meningitidis ATCC 13091]
 gi|313667418|ref|YP_004047702.1| ferredoxin [Neisseria lactamica ST-640]
 gi|7225340|gb|AAF40582.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]
 gi|59719075|gb|AAW90480.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|120865707|emb|CAM09434.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|193935192|gb|ACF31016.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          NCCP11945]
 gi|226513780|gb|EEH63125.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|254669373|emb|CBA08496.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|254671137|emb|CBA08170.1| Ferredoxin [Neisseria meningitidis alpha153]
 gi|261391661|emb|CAX49109.1| putative ferredoxin [Neisseria meningitidis 8013]
 gi|268547145|gb|EEZ42563.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|268551593|gb|EEZ46612.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268584179|gb|EEZ48855.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268586521|gb|EEZ51197.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268588783|gb|EEZ53459.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268623394|gb|EEZ55794.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268623511|gb|EEZ55911.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268627821|gb|EEZ60221.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|269210270|gb|EEZ76725.1| ferredoxin [Neisseria lactamica ATCC 23970]
 gi|291013191|gb|EFE05157.1| ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|291611487|gb|EFF40557.1| ferredoxin [Neisseria gonorrhoeae F62]
 gi|304337058|gb|EFM03245.1| ferredoxin [Neisseria meningitidis ATCC 13091]
 gi|309378534|emb|CBX22806.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313004880|emb|CBN86306.1| putative ferredoxin [Neisseria lactamica 020-06]
 gi|316985968|gb|EFV64907.1| ferredoxin [Neisseria meningitidis H44/76]
 gi|317165359|gb|ADV08900.1| putative ferredoxin [Neisseria gonorrhoeae TCDC-NG08107]
 gi|325133190|gb|EGC55861.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M6190]
 gi|325135232|gb|EGC57857.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M13399]
 gi|325138802|gb|EGC61354.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          ES14902]
 gi|325141268|gb|EGC63767.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          CU385]
 gi|325145445|gb|EGC67721.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240013]
 gi|325197412|gb|ADY92868.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          G2136]
 gi|325199337|gb|ADY94792.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          H44/76]
 gi|325203042|gb|ADY98496.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240149]
 gi|325203243|gb|ADY98696.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240355]
 gi|325205216|gb|ADZ00669.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M04-240196]
 gi|325207160|gb|ADZ02612.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          NZ-05/33]
          Length = 83

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCD--VCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 ILID-EEHPETHDELMAKY 76


>gi|51244192|ref|YP_064076.1| iron-sulfur cluster binding protein [Desulfotalea psychrophila
           LSv54]
 gi|50875229|emb|CAG35069.1| related to iron-sulfur cluster binding protein [Desulfotalea
           psychrophila LSv54]
          Length = 299

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C    C ++C      E      + P  C  CG+C   CP  AI+ 
Sbjct: 66  DKCISC--GTCRDLCKFGAISED---FVVDPIGCEGCGICVDFCPEQAIEF 111


>gi|323484838|ref|ZP_08090194.1| 4Fe-4S binding domain-containing protein [Clostridium symbiosum
           WAL-14163]
 gi|323401834|gb|EGA94176.1| 4Fe-4S binding domain-containing protein [Clostridium symbiosum
           WAL-14163]
          Length = 274

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            E+C  C    CVE CP+      +      P  CI C  C  +CP +A   D    L  
Sbjct: 201 PEDCDSC--GICVEACPMGSISREDPKEV--PGICIKCQACVKKCPTNAKYFDDPAFLSH 256

Query: 66  WLKINSEY 73
              +   Y
Sbjct: 257 IAMLEQNY 264


>gi|315923092|ref|ZP_07919332.1| ferredoxin [Bacteroides sp. D2]
 gi|313696967|gb|EFS33802.1| ferredoxin [Bacteroides sp. D2]
          Length = 514

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 1   MTYVV--TENCI----LCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPE 49
           M YVV   ENCI          C E CP        + +G     ++ + C+ CG CE  
Sbjct: 417 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 476

Query: 50  C---PVDAIKPDTEPGLEL 65
           C   P  AI  +  P  + 
Sbjct: 477 CPARPFRAIYIEGNPVQKE 495



 Score = 38.0 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + T  C  C    C   C   C    E   AI    C+DC  C   C   A+        
Sbjct: 221 IDTAKCNGC--GLCATKCKAACINSKE--HAIDYSRCVDCFNCLGACKQKALVYAPSLKK 276

Query: 64  ELWLK 68
           +  ++
Sbjct: 277 QSDVE 281


>gi|332653281|ref|ZP_08419026.1| iron-sulfur cluster-binding protein [Ruminococcaceae bacterium D16]
 gi|332518427|gb|EGJ48030.1| iron-sulfur cluster-binding protein [Ruminococcaceae bacterium D16]
          Length = 376

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  E C  C  T C + C      F +    + +  + C+ CG C   C  DAI    + 
Sbjct: 193 INPELCRGC--TRCQKECANGGLVFDKEARKMTVDQNNCVGCGRCLGACNFDAIYFVNDN 250

Query: 62  GLELWLKINSEYATQWPNI 80
                  +N   A     +
Sbjct: 251 ANST---LNCRMAEYTKAV 266


>gi|303229419|ref|ZP_07316209.1| ferredoxin [Veillonella atypica ACS-134-V-Col7a]
 gi|303231397|ref|ZP_07318131.1| ferredoxin [Veillonella atypica ACS-049-V-Sch6]
 gi|302513993|gb|EFL56001.1| ferredoxin [Veillonella atypica ACS-049-V-Sch6]
 gi|302515955|gb|EFL57907.1| ferredoxin [Veillonella atypica ACS-134-V-Col7a]
          Length = 54

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    C  VCPV    EGE    I+ D CIDCG CE  CPV  I  +
Sbjct: 3  VIADGCIKC--GSCASVCPVAAISEGETKYEIN-DTCIDCGSCESVCPVSVISAE 54


>gi|295101659|emb|CBK99204.1| hypothetical protein FP2_17700 [Faecalibacterium prausnitzii L2-6]
          Length = 128

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  T+ CI C    CVE+CP++  +            C  C  C   CP +AI+ 
Sbjct: 54  AFRATDACIGC--GRCVELCPLNNVHLKNGKPV-WGKNCTHCMACICYCPKEAIEY 106


>gi|295700902|ref|YP_003608795.1| formate dehydrogenase subunit beta [Burkholderia sp. CCGE1002]
 gi|295440115|gb|ADG19284.1| formate dehydrogenase, beta subunit [Burkholderia sp. CCGE1002]
          Length = 307

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C+   C++ CP      +  N +   H + CI CG C   CP D  +   +  
Sbjct: 97  KDGCMHCEDPGCLKACPAPGAIVQYTNGIVDFHQENCIGCGFCIAGCPFDIPRMSRQDR 155


>gi|253567823|ref|ZP_04845234.1| 4Fe-4S ferredoxin [Bacteroides sp. 1_1_6]
 gi|251841896|gb|EES69976.1| 4Fe-4S ferredoxin [Bacteroides sp. 1_1_6]
          Length = 256

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +  T  CI CK   C + CPV      E         C  C  C   CP  A++ 
Sbjct: 187 PFHATSECIGCK--RCEKSCPVGNITMKERRPV-WGKNCTACLACYHVCPQHAVQY 239


>gi|227326673|ref|ZP_03830697.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 302

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCSDPGCLKACPSAGAVIQYANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDN 155


>gi|223040943|ref|ZP_03611205.1| sulfur reductase FeS subunit [Campylobacter rectus RM3267]
 gi|222877787|gb|EEF12906.1| sulfur reductase FeS subunit [Campylobacter rectus RM3267]
          Length = 189

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            +  +C +C    CV VCP    ++  + L  +    C+ C  C   CP DA   +
Sbjct: 54  FIRHSCAMCDDAPCVSVCPTGASFQTADGLVLLDRSTCVSCKYCILACPYDARYVE 109


>gi|169794126|ref|YP_001718490.1| NADH dehydrogenase subunit I [Manihot esculenta]
 gi|157695938|gb|ABV66207.1| NADH-plastoquinone oxidoreductase subunit I [Manihot esculenta]
          Length = 165

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|164688748|ref|ZP_02212776.1| hypothetical protein CLOBAR_02395 [Clostridium bartlettii DSM
          16795]
 gi|164602224|gb|EDQ95689.1| hypothetical protein CLOBAR_02395 [Clostridium bartlettii DSM
          16795]
          Length = 589

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 1  MTYVV--TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV      C  C    C  VCPV+          I  D CI C  C   CP       
Sbjct: 13 MWYVNFKKTRCKSCY--ACARVCPVNAIKFKNEQAQILKDRCIVCNECSKACPQKNSILK 70

Query: 59 TEPGLELWLKINS 71
          +E     +   N 
Sbjct: 71 SEVSKIKFFFKNK 83


>gi|187251479|ref|YP_001875961.1| putative Indolepyruvate ferredoxin oxidoreductase [Elusimicrobium
          minutum Pei191]
 gi|186971639|gb|ACC98624.1| Putative indolepyruvate ferredoxin oxidoreductase [Elusimicrobium
          minutum Pei191]
          Length = 56

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +    CI C    C   CPV    E +    I P  CIDCG C   CPV  I
Sbjct: 1  MAHKIDGAVCINC--GACEGTCPVSAISEQDGKRVIDPAVCIDCGACVSSCPVSCI 54


>gi|229580876|ref|YP_002839275.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus Y.N.15.51]
 gi|228011592|gb|ACP47353.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus Y.N.15.51]
 gi|323475824|gb|ADX86430.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus REY15A]
 gi|323478603|gb|ADX83841.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus HVE10/4]
          Length = 87

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V    CI CK   C   CP          + +  + C  CGVC   CPV AI    E
Sbjct: 30 PVVDYNKCIGCK--VCFMFCPESTIVPSNGKVRVDYEYCKGCGVCANVCPVKAISMVNE 86


>gi|157164044|ref|YP_001467836.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Campylobacter concisus 13826]
 gi|112801720|gb|EAT99064.1| 4Fe-4S binding domain protein [Campylobacter concisus 13826]
          Length = 227

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C  C+   CV VCP    ++         + D+CI C  C   CP D    D
Sbjct: 97  SCQQCEDAPCVAVCPTKACHKDIKTGIQTTNIDDCIACKYCIVACPYDVRYID 149


>gi|115352330|ref|YP_774169.1| NADH dehydrogenase subunit I [Burkholderia ambifaria AMMD]
 gi|161524212|ref|YP_001579224.1| NADH dehydrogenase subunit I [Burkholderia multivorans ATCC 17616]
 gi|170698117|ref|ZP_02889197.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           IOP40-10]
 gi|171316311|ref|ZP_02905532.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MEX-5]
 gi|172061201|ref|YP_001808853.1| NADH dehydrogenase subunit I [Burkholderia ambifaria MC40-6]
 gi|189351031|ref|YP_001946659.1| NADH dehydrogenase subunit I [Burkholderia multivorans ATCC 17616]
 gi|221199664|ref|ZP_03572708.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2M]
 gi|221205436|ref|ZP_03578451.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2]
 gi|221211743|ref|ZP_03584722.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD1]
 gi|122322649|sp|Q0BDD8|NUOI_BURCM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737384|sp|B1YTP9|NUOI_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737387|sp|A9AFZ5|NUOI_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115282318|gb|ABI87835.1| NADH dehydrogenase subunit I [Burkholderia ambifaria AMMD]
 gi|160341641|gb|ABX14727.1| NADH-quinone oxidoreductase, chain I [Burkholderia multivorans ATCC
           17616]
 gi|170136975|gb|EDT05223.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           IOP40-10]
 gi|171098537|gb|EDT43338.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MEX-5]
 gi|171993718|gb|ACB64637.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           MC40-6]
 gi|189335053|dbj|BAG44123.1| NADH dehydrogenase I chain I [Burkholderia multivorans ATCC 17616]
 gi|221169104|gb|EEE01572.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD1]
 gi|221174274|gb|EEE06706.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2]
 gi|221180949|gb|EEE13352.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2M]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|295837117|ref|ZP_06824050.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. SPB74]
 gi|295826362|gb|EFG64799.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. SPB74]
          Length = 267

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 103 EKCVGCEL--CAWACPADAIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEAC 160

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 161 PTRALTM 167


>gi|294673542|ref|YP_003574158.1| RnfABCDGE type electron transport complex subunit B [Prevotella
           ruminicola 23]
 gi|294472470|gb|ADE81859.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella
           ruminicola 23]
          Length = 293

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CI C    C + C         N   I   +C  C  C   CP  AI
Sbjct: 223 SCIGC--GKCEKECNFGAITVENNLAYIDHTKCRLCRKCVTVCPKHAI 268



 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           C+ C   DCV  C               +  ++C  CG C   CP + I
Sbjct: 145 CLGC--GDCVAACQFGAISLNPETGIPEVDDEKCTSCGACVKACPRNII 191


>gi|325980919|ref|YP_004293321.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas
           sp. AL212]
 gi|325530438|gb|ADZ25159.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas
           sp. AL212]
          Length = 227

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++    CI C    C++ CPVD      +    +  DEC  C +C   CP+D I  
Sbjct: 79  AWIDENLCIGCTF--CIQSCPVDAIVGAAKQMHTVITDECTGCDLCVTPCPMDCISM 133



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC 40
           M  V+T+ C  C    CV  CP+DC         +    C
Sbjct: 108 MHTVITDECTGCDL--CVTPCPMDCISMIPVNKKVTDWAC 145


>gi|239833373|ref|ZP_04681701.1| formate dehydrogenase, beta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239821436|gb|EEQ93005.1| formate dehydrogenase, beta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 313

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +     D CI CG C   CP +
Sbjct: 109 KDGCMHCEDPGCLKACPAPGAIVQYSNGIVDFIHDNCIGCGYCIKGCPFN 158


>gi|254518138|ref|ZP_05130194.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium sp. 7_2_43FAA]
 gi|226911887|gb|EEH97088.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium sp. 7_2_43FAA]
          Length = 217

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + + C+ CK   C + CP+          +I   +CI CG C  +CP  +I  
Sbjct: 165 INDACVSCKL--CTKTCPMGINVHEYKNESITYYDCIQCGRCVNKCPKKSIGY 215


>gi|309322279|ref|YP_003934357.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa]
 gi|197131388|gb|ACH47212.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa]
 gi|300069372|gb|ADJ66492.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa]
          Length = 175

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWKFESDIRKKGLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|188584958|ref|YP_001916503.1| protein of unknown function DUF362 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349645|gb|ACB83915.1| protein of unknown function DUF362 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 398

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + + +C  C    C + CPVD           +N   I PD CI+C  C   CP  A+  
Sbjct: 321 IDSNSCAHC--GICQKSCPVDAIKTQRSTNGDKNLYTITPDNCIECYCCHELCPEKAVNI 378

Query: 58  D 58
           +
Sbjct: 379 E 379


>gi|220918980|ref|YP_002494284.1| formate dehydrogenase, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956834|gb|ACL67218.1| formate dehydrogenase, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 291

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V + C+ C    C++ CP      +  N +     D+CI CG C+  CP +  +   + 
Sbjct: 94  IVKDGCLHCAEPGCLKACPAPGAIVQYANGIVDFQQDQCIGCGYCQTGCPFNIPRYSMKD 153

Query: 62  G 62
            
Sbjct: 154 Q 154


>gi|163857553|ref|YP_001631851.1| hypothetical protein Bpet3241 [Bordetella petrii DSM 12804]
 gi|163261281|emb|CAP43583.1| unnamed protein product [Bordetella petrii]
          Length = 506

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C+ C    CV+VCP                 CI CG C   C     K     GL  +
Sbjct: 294 CVDCSL--CVQVCPTGIDIRDGLQY-----MCIGCGACIDACDQVMDKMQYPTGLIRY 344


>gi|270308191|ref|YP_003330249.1| iron-sulfur cluster-binding protein, ferredoxin-like protein
           [Dehalococcoides sp. VS]
 gi|270154083|gb|ACZ61921.1| iron-sulfur cluster-binding protein, ferredoxin-like protein
           [Dehalococcoides sp. VS]
          Length = 136

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
            C  C    CV +CPVD F        I     +CI CG+C   CP  A+
Sbjct: 85  RCTHC--GACVTMCPVDAFSIDSESREIKFDAKKCIVCGICIQSCPPRAM 132


>gi|149390595|ref|YP_001294239.1| NADH-plastoquinone oxidoreductase subunit I [Buxus microphylla]
 gi|156632607|sp|A6MM91|NDHI_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|146762340|gb|ABQ45304.1| NADH-plastoquinone oxidoreductase subunit I [Buxus microphylla]
          Length = 182

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETYIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|149190444|ref|ZP_01868715.1| FixG-related protein [Vibrio shilonii AK1]
 gi|148835698|gb|EDL52664.1| FixG-related protein [Vibrio shilonii AK1]
          Length = 472

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 7/46 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    CV+VCP                ECI+CG C   C    
Sbjct: 274 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDKTM 312


>gi|126439381|ref|YP_001058346.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 668]
 gi|166918789|sp|A3N7M5|NUOI_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|126218874|gb|ABN82380.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           668]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|115378570|ref|ZP_01465725.1| NADH-quinone oxidoreductase chain i [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820736|ref|YP_003953094.1| NADH-quinone oxidoreductase subunit i [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364442|gb|EAU63522.1| NADH-quinone oxidoreductase chain i [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393808|gb|ADO71267.1| NADH-quinone oxidoreductase subunit I [Stigmatella aurantiaca
           DW4/3-1]
          Length = 244

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 21/77 (27%)

Query: 8   NCILCKHTDCVEVCPVDCFY-------------------EGENFLAIHPDECIDCGVCEP 48
            C+ C    C  +CP  C Y                   +      I    CI CG+C  
Sbjct: 87  RCVACYM--CATICPAQCIYIEAGEYAPESEESQSRVIEKYPTQFVIDELRCIVCGLCVE 144

Query: 49  ECPVDAIKPDTEPGLEL 65
            CP DAI+ DT    + 
Sbjct: 145 ACPKDAIRMDTYEHTKP 161


>gi|41615088|ref|NP_963586.1| putative ATPase RIL [Nanoarchaeum equitans Kin4-M]
 gi|40068812|gb|AAR39147.1| NEQ299 [Nanoarchaeum equitans Kin4-M]
          Length = 574

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 4  VVTENC--ILCKHTDCVEVCP-----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +    C    C + +C   CP       C    +    I    CI CG+C  +CP  AI
Sbjct: 9  IDRTKCKPNKCNY-ECYNFCPLNRAGKKCIEIIDGKPVIDESICIGCGLCVKKCPFKAI 66


>gi|15643163|ref|NP_228207.1| glutamate synthase, alpha subunit [Thermotoga maritima MSB8]
 gi|148269661|ref|YP_001244121.1| glutamate synthase (NADPH) [Thermotoga petrophila RKU-1]
 gi|170288336|ref|YP_001738574.1| glutamate synthase (NADPH) [Thermotoga sp. RQ2]
 gi|281411629|ref|YP_003345708.1| glutamate synthase (NADPH) [Thermotoga naphthophila RKU-10]
 gi|4980901|gb|AAD35482.1|AE001719_8 glutamate synthase, alpha subunit [Thermotoga maritima MSB8]
 gi|147735205|gb|ABQ46545.1| glutamate synthase (NADPH) GltB2 subunit [Thermotoga petrophila
          RKU-1]
 gi|170175839|gb|ACB08891.1| Glutamate synthase (NADPH) [Thermotoga sp. RQ2]
 gi|281372732|gb|ADA66294.1| Glutamate synthase (NADPH) [Thermotoga naphthophila RKU-10]
          Length = 507

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CI C    CV VC     +  E  N +     +C+ C  CE  CP +AI        
Sbjct: 18 KCIRCL--ACVRVCSYGANFYDENANRVYTENTKCVGCHFCEAICPTEAITVRKNDFD 73


>gi|20808300|ref|NP_623471.1| MinD family protein [Thermoanaerobacter tengcongensis MB4]
 gi|254479165|ref|ZP_05092514.1| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|20516903|gb|AAM25075.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Thermoanaerobacter tengcongensis MB4]
 gi|214034893|gb|EEB75618.1| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 282

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C LC   +CV+ C      +    + +    C  CG C   CP +AI
Sbjct: 67  DKCTLC--GECVKACRFGALTKLIKKILVFDHLCHSCGACYEICPYNAI 113


>gi|219670605|ref|YP_002461040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|219540865|gb|ACL22604.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 93

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +  + C  C+   C+  CP   + E  + + +    C++CG C   C   AI  +  
Sbjct: 26 IDQQVCRTCREKSCLTACPAGLYSEQNDQITVEWAGCLECGTCRIICGKKAISWEYP 82


>gi|326909444|ref|YP_004327715.1| NADH dehydrogenase subunit I [Hevea brasiliensis]
 gi|308523558|gb|ADO33608.1| NADH dehydrogenase subunit I [Hevea brasiliensis]
          Length = 165

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|325276569|ref|ZP_08142313.1| formate dehydrogenase, beta subunit [Pseudomonas sp. TJI-51]
 gi|324098296|gb|EGB96398.1| formate dehydrogenase, beta subunit [Pseudomonas sp. TJI-51]
          Length = 316

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 93  KDGCMHCAEPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|283785277|ref|YP_003365142.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Citrobacter rodentium ICC168]
 gi|282948731|emb|CBG88325.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Citrobacter rodentium ICC168]
          Length = 294

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C+   C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRLNKEDN 155


>gi|295676045|ref|YP_003604569.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1002]
 gi|295435888|gb|ADG15058.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1002]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|255019915|ref|ZP_05291990.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970695|gb|EET28182.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
          Length = 163

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 14/93 (15%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVD+I
Sbjct: 61  EERCISCKL--CEAVCPALAITIRGEERADGTRRTTAYDIDLSKCIFCGLCEESCPVDSI 118

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLP 88
                   +   +  +E       +    + L 
Sbjct: 119 V--ESRVFDYHAETRAELLYNKERLLANGDRLE 149


>gi|167562185|ref|ZP_02355101.1| NADH dehydrogenase subunit I [Burkholderia oklahomensis EO147]
 gi|167569430|ref|ZP_02362304.1| NADH dehydrogenase subunit I [Burkholderia oklahomensis C6786]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|126465802|ref|YP_001040911.1| ATPase RIL [Staphylothermus marinus F1]
 gi|126014625|gb|ABN70003.1| ABC transporter related [Staphylothermus marinus F1]
          Length = 601

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECP 51
            V  E C    C   +C+  CPV+                  I+ D CI CG+C  +CP
Sbjct: 5  AVVDREYCKPNKCNL-ECIRFCPVNKTKRKKAIELSPDGKHAVIYEDICIGCGICVKKCP 63

Query: 52 VDAI 55
           +AI
Sbjct: 64 FNAI 67


>gi|304313914|ref|YP_003849061.1| tungsten formylmethanofuran dehydrogenase, subunit H
           [Methanothermobacter marburgensis str. Marburg]
 gi|1890206|emb|CAA61209.1| tungsten formylmethanofuran dehydrogenase [Methanothermobacter
           thermautotrophicus]
 gi|302587373|gb|ADL57748.1| tungsten formylmethanofuran dehydrogenase, subunit H
           [Methanothermobacter marburgensis str. Marburg]
          Length = 158

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  +CI C    CV+ C        +    +  + C  C +C   CP D+I
Sbjct: 96  VRNSCIGC--GLCVDTCLRKAITLRDLKAHVDSEWCCGCLICVDMCPTDSI 144


>gi|84488956|ref|YP_447188.1| HdrA2 [Methanosphaera stadtmanae DSM 3091]
 gi|84372275|gb|ABC56545.1| HdrA2 [Methanosphaera stadtmanae DSM 3091]
          Length = 771

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+LC    CVE C         N + +    C  CG C   CP +AI
Sbjct: 581 KCVLC--GSCVENCVYQAITLNRNSIHVDAISCTGCGDCIITCPQEAI 626



 Score = 37.3 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 20/69 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           YV T+ C  C    C   CP     E                    +   +  + CI CG
Sbjct: 242 YVDTQKCTSC--GRCTSACPTVVPDEWNEGLINRKAIYKPFPQAVPSTYTLDDEHCIKCG 299

Query: 45  VCEPECPVD 53
           +C   CP +
Sbjct: 300 ICTNVCPTN 308


>gi|114565178|ref|YP_752692.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114336471|gb|ABI73853.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 475

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   + GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDNTMERMGYDKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|53718855|ref|YP_107841.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei K96243]
 gi|53725807|ref|YP_103426.1| NADH dehydrogenase subunit I [Burkholderia mallei ATCC 23344]
 gi|67642184|ref|ZP_00440944.1| NADH-quinone oxidoreductase, i subunit [Burkholderia mallei GB8
           horse 4]
 gi|76809047|ref|YP_332852.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 1710b]
 gi|121600349|ref|YP_992477.1| NADH dehydrogenase subunit I [Burkholderia mallei SAVP1]
 gi|124383581|ref|YP_001026720.1| NADH dehydrogenase subunit I [Burkholderia mallei NCTC 10229]
 gi|126448769|ref|YP_001079995.1| NADH dehydrogenase subunit I [Burkholderia mallei NCTC 10247]
 gi|126452103|ref|YP_001065585.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 1106a]
 gi|134283892|ref|ZP_01770588.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 305]
 gi|167000360|ref|ZP_02266178.1| NADH dehydrogenase I, I subunit [Burkholderia mallei PRL-20]
 gi|167718853|ref|ZP_02402089.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei DM98]
 gi|167737861|ref|ZP_02410635.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 14]
 gi|167815044|ref|ZP_02446724.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 91]
 gi|167823460|ref|ZP_02454931.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 9]
 gi|167845012|ref|ZP_02470520.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei B7210]
 gi|167893553|ref|ZP_02480955.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 7894]
 gi|167901999|ref|ZP_02489204.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei NCTC 13177]
 gi|167910235|ref|ZP_02497326.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 112]
 gi|167918268|ref|ZP_02505359.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei BCC215]
 gi|217420048|ref|ZP_03451554.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 576]
 gi|226195304|ref|ZP_03790893.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811590|ref|YP_002896041.1| NADH-quinone oxidoreductase subunit i (NADH dehydrogenase i subunit
           i) (ndh-1 subunit i) [Burkholderia pseudomallei MSHR346]
 gi|242314671|ref|ZP_04813687.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106b]
 gi|254175738|ref|ZP_04882398.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 10399]
 gi|254181179|ref|ZP_04887776.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1655]
 gi|254190542|ref|ZP_04897049.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195148|ref|ZP_04901577.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           S13]
 gi|254202102|ref|ZP_04908465.1| NADH dehydrogenase I, I subunit [Burkholderia mallei FMH]
 gi|254207432|ref|ZP_04913782.1| NADH dehydrogenase I, I subunit [Burkholderia mallei JHU]
 gi|254260039|ref|ZP_04951093.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1710a]
 gi|254298541|ref|ZP_04965993.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           406e]
 gi|254359854|ref|ZP_04976124.1| NADH dehydrogenase I, I subunit [Burkholderia mallei 2002721280]
 gi|81380042|sp|Q63VM5|NUOI_BURPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81604658|sp|Q62IP3|NUOI_BURMA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502520|sp|Q3JUA1|NUOI_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633514|sp|A3NTB4|NUOI_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918786|sp|A3MIA9|NUOI_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918787|sp|A2S451|NUOI_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918788|sp|A1V2M4|NUOI_BURMS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|52209269|emb|CAH35214.1| putative NADH dehydrogenase I chain I [Burkholderia pseudomallei
           K96243]
 gi|52429230|gb|AAU49823.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 23344]
 gi|76578500|gb|ABA47975.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1710b]
 gi|121229159|gb|ABM51677.1| NADH dehydrogenase I, I subunit [Burkholderia mallei SAVP1]
 gi|124291601|gb|ABN00870.1| NADH dehydrogenase I, I subunit [Burkholderia mallei NCTC 10229]
 gi|126225745|gb|ABN89285.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106a]
 gi|126241639|gb|ABO04732.1| NADH dehydrogenase I, I subunit [Burkholderia mallei NCTC 10247]
 gi|134244681|gb|EBA44779.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 305]
 gi|147746349|gb|EDK53426.1| NADH dehydrogenase I, I subunit [Burkholderia mallei FMH]
 gi|147751326|gb|EDK58393.1| NADH dehydrogenase I, I subunit [Burkholderia mallei JHU]
 gi|148029094|gb|EDK86999.1| NADH dehydrogenase I, I subunit [Burkholderia mallei 2002721280]
 gi|157808385|gb|EDO85555.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           406e]
 gi|157938217|gb|EDO93887.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696782|gb|EDP86752.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 10399]
 gi|169651896|gb|EDS84589.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           S13]
 gi|184211717|gb|EDU08760.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1655]
 gi|217397352|gb|EEC37368.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 576]
 gi|225932506|gb|EEH28504.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237504518|gb|ACQ96836.1| NADH-quinone oxidoreductase subunit i (NADH dehydrogenase i subunit
           i) (ndh-1 subunit i) [Burkholderia pseudomallei MSHR346]
 gi|238523280|gb|EEP86719.1| NADH-quinone oxidoreductase, i subunit [Burkholderia mallei GB8
           horse 4]
 gi|242137910|gb|EES24312.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106b]
 gi|243063694|gb|EES45880.1| NADH dehydrogenase I, I subunit [Burkholderia mallei PRL-20]
 gi|254218728|gb|EET08112.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1710a]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|332993968|gb|AEF04023.1| electron transport complex protein RnfB [Alteromonas sp. SN2]
          Length = 189

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD      ++   +  +EC  C +C   CPVD I  
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAILGAAKHMHTVIVEECTGCDLCVDPCPVDCIDM 161


>gi|296936725|gb|ADH94397.1| NADH-plastoquinone oxidoreductase subunit I [Syzygium cumini]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP                +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|218782798|ref|YP_002434116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764182|gb|ACL06648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 361

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCV-EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  + C+ C    C  E C V    EG++   + P+ CI CG+C   CP +AI    +
Sbjct: 273 AVIDPDECVAC--GVCADERCQVRAIEEGDDAYRVKPEACIGCGLCVSTCPSEAISLIRK 330

Query: 61  PGLE 64
           P  E
Sbjct: 331 PEEE 334


>gi|218551125|ref|YP_002384916.1| formate dehydrogenase-O, Fe-S subunit [Escherichia fergusonii ATCC
           35469]
 gi|218358666|emb|CAQ91319.1| formate dehydrogenase-O, Fe-S subunit [Escherichia fergusonii ATCC
           35469]
          Length = 300

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +     +CI CG C   CP D  + + E  
Sbjct: 97  KDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCVAGCPFDIPRLNPEDN 155


>gi|168463130|ref|ZP_02697061.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195634204|gb|EDX52556.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 192

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
             +   NCI C  T C++ CPVD           +  D C  C +C   CP   I
Sbjct: 110 AVIDENNCIGC--TKCIQACPVDAIIGATRAMHTVMSDLCTGCNLCVDPCPTHCI 162


>gi|170719731|ref|YP_001747419.1| formate dehydrogenase subunit beta [Pseudomonas putida W619]
 gi|169757734|gb|ACA71050.1| formate dehydrogenase, beta subunit [Pseudomonas putida W619]
          Length = 318

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 93  KDGCMHCAEPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|91092422|ref|XP_968009.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Tribolium
          castaneum]
 gi|270004744|gb|EFA01192.1| hypothetical protein TcasGA2_TC010519 [Tribolium castaneum]
          Length = 608

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V  + C    C+  +C + CPV                 AI  + CI CG+C  +CP +A
Sbjct: 19 VNADKCKPKRCR-QECKKSCPVVRMGKLCIEVTPNSKMAAISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78



 Score = 34.6 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE 28
          M  +  E CI C    CV+ CP +    
Sbjct: 55 MAAISEELCIGC--GICVKKCPFEAITI 80


>gi|10802771|gb|AAG23607.1|AF244658_1 carbon monoxide dehydrogenase [Carboxydothermus hydrogenoformans]
          Length = 128

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+   
Sbjct: 60  CKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIRVID 111


>gi|24371702|ref|NP_715744.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Shewanella oneidensis MR-1]
 gi|24345478|gb|AAN53189.1|AE015461_7 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Shewanella oneidensis MR-1]
          Length = 304

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C    C++ C       +  N       D+CI CG C   CP D
Sbjct: 98  ACMHCADPACLKACSTSGAIIQHANGTVDFDSDKCIGCGYCASACPFD 145


>gi|15679378|ref|NP_276495.1| hypothetical protein MTH1379 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622489|gb|AAB85856.1| conserved protein (contains ferredoxin domain) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 236

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C+       CP D    G   + I    C  CG C   CP  A+
Sbjct: 146 ELCRGCEPCLAAAACPEDAIVPG---VEIRLLSCRGCGACRTACPHGAV 191


>gi|48478735|ref|YP_024342.1| NADH dehydrogenase subunit I [Saccharum hybrid cultivar SP-80-3280]
 gi|50812598|ref|YP_054699.1| NADH dehydrogenase subunit I [Saccharum officinarum]
 gi|118614546|ref|YP_899461.1| NADH-plastoquinone oxidoreductase subunit I [Sorghum bicolor]
 gi|75290170|sp|Q6ENP3|NDHI_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75291234|sp|Q6L3D6|NDHI_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|125952749|sp|A1E9X8|NDHI_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|48478637|gb|AAT44657.1| NADH dehydrogenase subunit I [Saccharum hybrid cultivar SP80-3280]
 gi|49659582|dbj|BAD27363.1| NADH dehydrogenase 18kD subunit [Saccharum hybrid cultivar NCo 310]
 gi|118201180|gb|ABK79550.1| NADH-plastoquinone oxidoreductase subunit I [Sorghum bicolor]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPLVDWKFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|11466851|ref|NP_039448.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group]
 gi|12054|emb|CAA33909.1| 18kDa protein related to a subunit of NADH dehydroghenase [Oryza
           sativa Japonica Group]
 gi|226675|prf||1603356DC NADH dehydrogenase-like 18kD protein
          Length = 178

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 60  DKCIACE--VCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCL 117

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 118 SMTEEYELSTYDRHELN 134


>gi|28898877|ref|NP_798482.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260362455|ref|ZP_05775396.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           K5030]
 gi|260879450|ref|ZP_05891805.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AN-5034]
 gi|260897153|ref|ZP_05905649.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           Peru-466]
 gi|260902710|ref|ZP_05911105.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AQ4037]
 gi|33301642|sp|Q87MX3|RNFB_VIBPA RecName: Full=Electron transport complex protein rnfB
 gi|28807096|dbj|BAC60366.1| RnfB-related protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087155|gb|EFO36850.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           Peru-466]
 gi|308093524|gb|EFO43219.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AN-5034]
 gi|308109013|gb|EFO46553.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AQ4037]
 gi|308113332|gb|EFO50872.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           K5030]
          Length = 198

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|319901257|ref|YP_004160985.1| ferredoxin-type protein [Bacteroides helcogenes P 36-108]
 gi|319416288|gb|ADV43399.1| putative ferredoxin-type protein [Bacteroides helcogenes P 36-108]
          Length = 504

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             + T  C  C    C   C   C    E   AI    C+ C  C  +C   AI+     
Sbjct: 218 PVIDTSKCNGC--GLCARNCKASCINPKE--HAIDYSRCVACMDCINKCRQGAIRYIHPT 273

Query: 62  GLE 64
            L+
Sbjct: 274 KLQ 276



 Score = 35.0 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 5/46 (10%)

Query: 17  CVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  VCPV                I   +C  CG+C   C    I P
Sbjct: 197 CNTVCPVGTVLGFLAKYSWLKPVIDTSKCNGCGLCARNCKASCINP 242



 Score = 34.2 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPEC- 50
           + +NCI      +  +C   CP                    A++ + CI CG CE  C 
Sbjct: 427 IKKNCIPLTDGVECGNCARHCPTGAIQMVPSDPAAENSPKIPAVNTERCIGCGACENLCP 486

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 487 ARPFSAIYVE 496


>gi|313886225|ref|ZP_07819954.1| ferredoxin [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924296|gb|EFR35076.1| ferredoxin [Porphyromonas asaccharolytica PR426713P-I]
          Length = 311

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C +VC  +      N   I   +C  C  C  ECP  AI     P  + 
Sbjct: 219 ACIGCSK--CFKVCQFEAITIDNNLAYIDHQKCRLCRKCAAECPTGAIHEINFPPRKE 274



 Score = 33.8 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
            C  + DCV VC  D  +         +  D+C  CG C   CP   I
Sbjct: 140 GCLGNGDCVAVCDFDAIHMNPETGLPEVDEDKCTACGACVKACPKMII 187


>gi|302521202|ref|ZP_07273544.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp.
           SPB78]
 gi|302430097|gb|EFL01913.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp.
           SPB78]
          Length = 267

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 103 EKCVGCEL--CAWACPADAIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEAC 160

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 161 PTRALTM 167


>gi|298252164|ref|ZP_06975967.1| cyclic nucleotide-binding protein [Ktedonobacter racemifer DSM
           44963]
 gi|297546756|gb|EFH80624.1| cyclic nucleotide-binding protein [Ktedonobacter racemifer DSM
           44963]
          Length = 649

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 6/88 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V   C  C+   C+ +C         +      + CI CG+C   CP D I   +    E
Sbjct: 488 VATACRHCQDPVCL-LCSRAGIARLPSGEVYITESCIGCGICAERCPYDNISIISLNEQE 546

Query: 65  L-----WLKINSEYATQWPNITTKKESL 87
                 W +    ++        K++  
Sbjct: 547 AAPSSTWERFTRFFSKGVGREYGKRQLP 574


>gi|297159516|gb|ADI09228.1| NADH dehydrogenase subunit I [Streptomyces bingchenggensis BCW-1]
          Length = 203

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 52  EKCIGCEL--CAWACPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGLCVEAC 109

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 110 PTRALTM 116


>gi|297192779|ref|ZP_06910177.1| NADH dehydrogenase subunit I [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151490|gb|EFH31194.1| NADH dehydrogenase subunit I [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 233

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 80  EKCVGCEL--CAWACPADAIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEAC 137

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 138 PTRALTM 144


>gi|262402058|ref|ZP_06078622.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio sp. RC586]
 gi|262351704|gb|EEZ00836.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio sp. RC586]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 275 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 325


>gi|257464597|ref|ZP_05628968.1| formate dehydrogenase, beta subunit [Actinobacillus minor 202]
 gi|257450257|gb|EEV24300.1| formate dehydrogenase, beta subunit [Actinobacillus minor 202]
          Length = 301

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP            +     +CI CG C   CP +  + + E  
Sbjct: 98  KDGCMHCAEPGCLKACPAPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNDEDN 156


>gi|261402606|ref|YP_003246830.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369599|gb|ACX72348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 398

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPG 62
           +  E C+ C   +C   CP++     E    I+  +CI C  C   CP+ DAI    E  
Sbjct: 123 IDDEVCVHC--GNCERACPINVIERKEGRYVINMSQCISCKECINACPIEDAIIVVDEKT 180

Query: 63  LELWLK 68
           L+  ++
Sbjct: 181 LKEKIE 186



 Score = 39.2 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  + CI C+   C +VC        +      I PD C+  G C  ECPV AIK     
Sbjct: 273 VDEDMCIGCR--ICQKVCGSGAIKISKETKLPYIIPDLCVRGGACARECPVGAIKIVKPE 330

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             E  +K+          I   K+ +    K   VK++ EK 
Sbjct: 331 EAEKAVKVRIIEDKIIETIE--KDLISFTKKYGKVKEEIEKL 370



 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL--------AIHPDECIDCGVCEPECPVDAIKPDT 59
           NC+ C    C++VCP       +  +         +  D CI C +C+  C   AIK   
Sbjct: 240 NCVKC--GFCIDVCPTTAIRTHKEIVPKRKDICYMVDEDMCIGCRICQKVCGSGAIKISK 297

Query: 60  E 60
           E
Sbjct: 298 E 298


>gi|258514560|ref|YP_003190782.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778265|gb|ACV62159.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 1005

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  + C  C    C  VCP         +    ++   C  CG C   C   A+ 
Sbjct: 937 INNKKCAGC--GVCELVCPSKAIAVDTEKMIAVVNEALCKGCGACASSCRCGALN 989



 Score = 34.2 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 27/92 (29%), Gaps = 29/92 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDEC---- 40
           ++    C  C    CVEVCP     E +  L                  AI    C    
Sbjct: 105 FIDPLKCTGC--GSCVEVCPKKVTDEFDQGLRDRRSIYKPYAQAFPNAFAIDGSSCLKIK 162

Query: 41  --IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
               CG C   C   AI        +  ++IN
Sbjct: 163 KPKACGKCLEVCQAGAI---DHTMQDEIVEIN 191


>gi|158319788|ref|YP_001512295.1| nitroreductase [Alkaliphilus oremlandii OhILAs]
 gi|158139987|gb|ABW18299.1| nitroreductase [Alkaliphilus oremlandii OhILAs]
          Length = 266

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +  E CI C    C + CP+           +  ++C++CG C   CP DA         
Sbjct: 9  IDVEKCIGC--GLCCKDCPLHVLVLQNGKATMMAEKCLECGHCVAICPKDAFTMRGYDMQ 66

Query: 64 E 64
          E
Sbjct: 67 E 67


>gi|157325587|ref|YP_001468365.1| NADH dehydrogenase subunit I [Ipomoea purpurea]
 gi|157056815|gb|ABV02405.1| NADH-plastoquinone oxidoreductase subunit I [Ipomoea purpurea]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWQLETDIRKKRLLNYSIDFGLCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|153854160|ref|ZP_01995468.1| hypothetical protein DORLON_01459 [Dorea longicatena DSM 13814]
 gi|149753209|gb|EDM63140.1| hypothetical protein DORLON_01459 [Dorea longicatena DSM 13814]
          Length = 582

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 6   TENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T+ C  C    C++  CP       +  ++I    C  CG+C   C  DAI+   E
Sbjct: 527 TDKCKKC--GMCMKPGCPA-MTKNADGTVSIDDTMCTGCGLCASLCKFDAIELVKE 579


>gi|139388967|ref|YP_001123693.1| NADH dehydrogenase subunit I [Lepidium virginicum]
 gi|156632615|sp|A4QLG3|NDHI_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286897|dbj|BAF50518.1| NADH dehydrogenase subunit [Lepidium virginicum]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|139390209|ref|YP_001123781.1| NADH dehydrogenase subunit I [Lobularia maritima]
 gi|156632616|sp|A4QLQ1|NDHI_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286986|dbj|BAF50606.1| NADH dehydrogenase subunit [Lobularia maritima]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|139389319|ref|YP_001123084.1| NADH dehydrogenase subunit [Aethionema grandiflorum]
 gi|156632603|sp|A4QJQ4|NDHI_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286281|dbj|BAF49909.1| NADH dehydrogenase subunit [Aethionema grandiflorum]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETHIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|123455670|ref|XP_001315577.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121898258|gb|EAY03354.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 499

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCGVCEPECPVDAI 55
            CI C    CV+VCP     +G +             C+ CG C   CP  AI
Sbjct: 133 ACIDCYK--CVDVCPTGALTKGNHLQTFGHFGLRDSGCVSCGACVDVCPTKAI 183


>gi|186475080|ref|YP_001856550.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia phymatum STM815]
 gi|184191539|gb|ACC69504.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phymatum STM815]
          Length = 85

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCVQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  +    LE   ++  +Y
Sbjct: 59 IPRN-PDYLETAEQLMEKY 76


>gi|46580676|ref|YP_011484.1| pyruvate formate-lyase activating enzyme [Desulfovibrio vulgaris
          str. Hildenborough]
 gi|46450095|gb|AAS96744.1| pyruvate formate-lyase activating enzyme, putative [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|311234399|gb|ADP87253.1| glycyl-radical enzyme activating protein family [Desulfovibrio
          vulgaris RCH1]
          Length = 297

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CVEVCP       +  +     +C  CG+C   CP  A
Sbjct: 55 CTGC--GKCVEVCPEGAARIVDGKVIRSIAKCTHCGLCTASCPSKA 98


>gi|7525089|ref|NP_051113.1| NADH dehydrogenase subunit I [Arabidopsis thaliana]
 gi|297790826|ref|XP_002863298.1| NADH dehydrogenase subunit I [Arabidopsis lyrata subsp. lyrata]
 gi|6685681|sp|P56755|NDHI_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|5881750|dbj|BAA84441.1| NADH dehydrogenase subunit [Arabidopsis thaliana]
 gi|297309132|gb|EFH39557.1| NADH dehydrogenase subunit I [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E     +   ++N
Sbjct: 120 SMTEEYEFSTYDRHELN 136


>gi|332299856|ref|YP_004441777.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332176919|gb|AEE12609.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 311

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C +VC  +      N   I   +C  C  C  ECP  AI     P  + 
Sbjct: 219 ACIGCSK--CFKVCQFEAITIDNNLAYIDHQKCRLCRKCAAECPTGAIHEINFPPRKE 274



 Score = 33.8 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
            C  + DCV VC  D  +         +  D+C  CG C   CP   I
Sbjct: 140 GCLGNGDCVAVCDFDAIHMNPETGLPEVDEDKCTACGACVKACPKMII 187


>gi|328474564|gb|EGF45369.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           10329]
          Length = 198

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|327401439|ref|YP_004342278.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316947|gb|AEA47563.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 780

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 23/79 (29%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDEC---IDC 43
           VT+ C  C   +CV+ CP +   E                        I  + C     C
Sbjct: 222 VTDACTAC--GECVKACPAERPNEFNYGMDKTKAIYLPHEMSFPMKYVIDAEYCQKNEGC 279

Query: 44  GVCEPECPVDAIKPDTEPG 62
             C   CP DAI    EP 
Sbjct: 280 KACVDACPYDAIDLAMEPK 298



 Score = 39.2 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           + C  CK   C E CP     E E    I +P  C  CG C   CP   I
Sbjct: 573 QRCTQCK--RCTEECPFSALEEDERGTPILNPARCRRCGTCFGACPERII 620


>gi|283778897|ref|YP_003369652.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283437350|gb|ADB15792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 718

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 21/90 (23%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +CI C    CV++CP D               C  C  C   CP +AI         
Sbjct: 386 VESSCIHCNK--CVQICPFDAIKPDFTTRTTD---CTLCQTCAGVCPTEAI--------- 431

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMD 94
                  ++  +W  I  K E+ P   +  
Sbjct: 432 -------KFVERWNLIQLKVENDPPTHETA 454


>gi|240949382|ref|ZP_04753724.1| formate dehydrogenase, beta subunit [Actinobacillus minor NM305]
 gi|240296232|gb|EER46885.1| formate dehydrogenase, beta subunit [Actinobacillus minor NM305]
          Length = 301

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP            +     +CI CG C   CP +  + + E  
Sbjct: 98  KDGCMHCAEPGCLKACPAPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNDEDN 156


>gi|309322199|ref|YP_003934114.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum]
 gi|197131386|gb|ACH47211.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum]
 gi|300069292|gb|ADJ66413.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum]
          Length = 173

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIELPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|215489223|ref|YP_002331654.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312969362|ref|ZP_07783564.1| formate dehydrogenase, beta subunit [Escherichia coli 2362-75]
 gi|215267295|emb|CAS11744.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312285909|gb|EFR13827.1| formate dehydrogenase, beta subunit [Escherichia coli 2362-75]
          Length = 300

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +      +   +     +CI CG C   CP D  + + E  
Sbjct: 97  KDGCMHCSDPGCLKACPAEGAIIQYSNGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDN 155


>gi|212637811|ref|YP_002314336.1| iron-sulfur cluster-binding protein [Shewanella piezotolerans WP3]
 gi|212559295|gb|ACJ31749.1| Iron-sulfur cluster-binding protein [Shewanella piezotolerans WP3]
          Length = 430

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   + GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDTTMSRMGYDKGLISYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|188587898|ref|YP_001920057.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498179|gb|ACD51315.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 345

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C    CV+ C        Y  +   A   D+CI CG C   CP  A         
Sbjct: 177 DRCVGC--GACVKECKQHVTSALYGKDGKAAKQIDKCIGCGACVKVCPTMA--WSRSNKK 232

Query: 64  ELWLKI 69
             W+KI
Sbjct: 233 FYWVKI 238


>gi|170756328|ref|YP_001782557.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1
          str. Okra]
 gi|169121540|gb|ACA45376.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1
          str. Okra]
          Length = 247

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  E C  C    CV  C        +     I  + C   G C PECP  AIK      
Sbjct: 8  IDKEKCNGC--GLCVTACHEGAIELIDGRAVLISDEYCDGLGDCLPECPTGAIKIVEREA 65

Query: 63 LELWLKINSEYATQWPNITTKKESLP 88
           E   ++  +       +   KE +P
Sbjct: 66 AEYNEELVEKRMAMKKPVEENKEKMP 91


>gi|164686951|ref|ZP_02210979.1| hypothetical protein CLOBAR_00577 [Clostridium bartlettii DSM
           16795]
 gi|164603836|gb|EDQ97301.1| hypothetical protein CLOBAR_00577 [Clostridium bartlettii DSM
           16795]
          Length = 381

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 8   NCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  CK   C + C  +   F +    ++I+PD C  CG C   C  DAI  +    +E 
Sbjct: 201 KCRGCKK--CQKECANNGLVFNKETKKMSINPDTCAGCGRCIGACNFDAIAFENYTAVEN 258

Query: 66  WLKINSEYATQWPNI 80
              +N   A     +
Sbjct: 259 ---LNCRMAEYTKAV 270


>gi|148380875|ref|YP_001255416.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
          ATCC 3502]
 gi|153933294|ref|YP_001385182.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
          ATCC 19397]
 gi|153937724|ref|YP_001388651.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
          Hall]
 gi|148290359|emb|CAL84484.1| iron-sulfur cluster protein [Clostridium botulinum A str. ATCC
          3502]
 gi|152929338|gb|ABS34838.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
          ATCC 19397]
 gi|152933638|gb|ABS39137.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
          Hall]
          Length = 247

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  E C  C    CV  C        +     I  + C   G C PECP  AIK      
Sbjct: 8  IDKEKCNGC--GLCVTACHEGAIELIDGRAVLISDEYCDGLGDCLPECPTGAIKIVEREA 65

Query: 63 LELWLKINSEYATQWPNITTKKESLP 88
           E   ++  +       +   KE +P
Sbjct: 66 AEYNEELVEKRMAMKKPVEENKEKMP 91


>gi|148244257|ref|YP_001218951.1| adenylylsulfate reductase beta subunit [Candidatus
          Vesicomyosocius okutanii HA]
 gi|146326084|dbj|BAF61227.1| adenylylsulfate reductase beta subunit [Candidatus
          Vesicomyosocius okutanii HA]
          Length = 159

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
          T+V    C  C    CV++CP D  +  + +     I P+ C +C  C   CP  AI
Sbjct: 3  TFVYMTRCDGC--GHCVDICPSDIMHIDDKYRRAYNIEPNMCWECYSCVKACPHQAI 57


>gi|119897695|ref|YP_932908.1| NADH dehydrogenase subunit I [Azoarcus sp. BH72]
 gi|156632702|sp|A1K5B6|NUOI_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|119670108|emb|CAL94021.1| putative NADH-ubiquinone oxidoreductase, chain I [Azoarcus sp.
           BH72]
          Length = 161

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  +CP                  +   I   +CI CG CE  CPVDA+
Sbjct: 59  EERCIACKL--CEAICPAMAITIESEQREDGSRRTSRYDIDLTKCIFCGFCEEACPVDAV 116


>gi|262393721|ref|YP_003285575.1| electron transport complex protein RnfB [Vibrio sp. Ex25]
 gi|262337315|gb|ACY51110.1| electron transport complex protein RnfB [Vibrio sp. Ex25]
          Length = 198

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  + CI C  T C++ CPVD    G +    +  DEC  C +C   CP D I+ 
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIEM 161


>gi|85860881|ref|YP_463083.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB]
 gi|85723972|gb|ABC78915.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB]
          Length = 943

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C+ C    C+ VC                 ++P  C   GVC   CP  A+
Sbjct: 859 VDEEKCVSC--GACITVCSYGAIDFYESPRGRRARVNPVLCKGDGVCNTVCPTSAV 912



 Score = 37.3 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 27/90 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDEC---- 40
           Y++ + C  C    C E CPV                             I         
Sbjct: 21  YIIEDKCTGC--GTCTEYCPVQYPDRFNQDISYSKAVHVYFSQAFPLVAYIDESCLYLKE 78

Query: 41  IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             C +CE  C   AI    +P     ++IN
Sbjct: 79  KKCTLCERVCQAGAIDFGQKPQK---VEIN 105


>gi|60117229|ref|YP_209563.1| NADH dehydrogenase subunit I [Huperzia lucidula]
 gi|75286705|sp|Q5SCZ1|NDHI_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|50660037|gb|AAT80759.1| NADH-plastoquinone oxidoreductase subunit 8 [Huperzia lucidula]
          Length = 183

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 15/79 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWEFEKNIRKKQLTSYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKINSE 72
               E  L  +   ++N +
Sbjct: 120 SMTEEYELSTYDRHELNHD 138


>gi|89897528|ref|YP_521015.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336976|dbj|BAE86571.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 246

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C++  C++ CP +  ++ E +  + +   +C     C   CP  A K  ++      
Sbjct: 59  CGHCENPVCLKACPNNALFKEEKYGAVLVDESKCKGARQCAVVCPYGAPKFASDAPGTKM 118

Query: 67  LK 68
            K
Sbjct: 119 TK 120


>gi|85716065|ref|ZP_01047041.1| nitrate reductase, beta subunit [Nitrobacter sp. Nb-311A]
 gi|85697064|gb|EAQ34946.1| nitrate reductase, beta subunit [Nitrobacter sp. Nb-311A]
          Length = 505

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV  CP    Y+ GE+ +  +  + C    +C   CP      + 
Sbjct: 180 CNHCLNPGCVAACPQGALYKRGEDGVVLVSQERCRAWRMCVSGCPYKKTYFNW 232


>gi|318057835|ref|ZP_07976558.1| NADH dehydrogenase subunit I [Streptomyces sp. SA3_actG]
 gi|318077143|ref|ZP_07984475.1| NADH dehydrogenase subunit I [Streptomyces sp. SA3_actF]
          Length = 253

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 89  EKCVGCEL--CAWACPADAIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEAC 146

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 147 PTRALTM 153


>gi|312793198|ref|YP_004026121.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180338|gb|ADQ40508.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 597

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +NC  C+    +  CP     E  N + I    C  CG+C+  C   AI
Sbjct: 540 FKINKNCSKCRACMMITGCPAIDEDENGNII-IDSTLCNGCGLCKNFCRYSAI 591


>gi|309704319|emb|CBJ03668.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli ETEC
           H10407]
          Length = 300

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +     +CI CG C   CP D  + + E  
Sbjct: 97  KDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDN 155


>gi|301061466|ref|ZP_07202234.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [delta proteobacterium NaphS2]
 gi|300444430|gb|EFK08427.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [delta proteobacterium NaphS2]
          Length = 569

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V +  C  C    CV +CP       E      +    C  CG+C   C   AI      
Sbjct: 501 VDSACCSAC--GVCVSICPYAAPRLDETSGKAMVQSTLCKGCGLCVSSCRSGAIHLKGFD 558

Query: 62  GLELWLKI 69
             E+  +I
Sbjct: 559 ISEIMAQI 566


>gi|294637338|ref|ZP_06715634.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Edwardsiella tarda ATCC 23685]
 gi|291089495|gb|EFE22056.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Edwardsiella tarda ATCC 23685]
          Length = 545

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 8   NCILCKHTD-CVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +C  C   D C   CP     +           D+C  C  C  +CP  AI+  +E   E
Sbjct: 486 SCGNCFECDGCYGACPEGAVIKLGKGLRYRFDYDKCTGCRACYLQCPCHAIEMISEEEAE 545


>gi|281356261|ref|ZP_06242754.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
 gi|281317630|gb|EFB01651.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
          Length = 491

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             E C+ C    CV  CP  C         I  + C+ C  C   CPV AI     
Sbjct: 213 DKEQCVKC--GKCVRSCPSGC--IALAKGEIDNERCVRCMNCFSACPVGAIHYGHP 264



 Score = 34.2 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 21/91 (23%), Gaps = 11/91 (12%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCGVCEPEC---PVDAIKPDTEPG 62
                 C E CP        +   I   +     CI CG CE  C   P  AI     P 
Sbjct: 402 GTDCGACAEHCPTGALRMEPDSRGIRIPKLTSELCIGCGSCEYACPVRPERAIVVRPVPI 461

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKM 93
                    EY            +       
Sbjct: 462 QVRSTD-PEEYFRTHAKPAEP--APAGDDGW 489


>gi|255013522|ref|ZP_05285648.1| iron-sulfur cluster-binding protein, putative polyferredoxin
           [Bacteroides sp. 2_1_7]
 gi|256840035|ref|ZP_05545544.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Parabacteroides sp. D13]
 gi|256738965|gb|EEU52290.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Parabacteroides sp. D13]
          Length = 322

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T +C  C    C   C  D  ++ E         C  CG C   C   AI+    
Sbjct: 242 TTDCCHC--MACTNACRYDALHKEEIKKGKIGYTCTYCGDCLSACKHGAIEYHFP 294


>gi|238024282|ref|YP_002908514.1| Fe-S-cluster-containing hydrogenase components 1 [Burkholderia
           glumae BGR1]
 gi|237878947|gb|ACR31279.1| Fe-S-cluster-containing hydrogenase components 1 [Burkholderia
           glumae BGR1]
          Length = 304

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|238028135|ref|YP_002912366.1| NADH dehydrogenase subunit I [Burkholderia glumae BGR1]
 gi|237877329|gb|ACR29662.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Burkholderia glumae BGR1]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESQTRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|226326553|ref|ZP_03802071.1| hypothetical protein PROPEN_00403 [Proteus penneri ATCC 35198]
 gi|225204978|gb|EEG87332.1| hypothetical protein PROPEN_00403 [Proteus penneri ATCC 35198]
          Length = 316

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHP-DECIDCGVCEPECPVDAIKPDTE 60
           + C+ C    CV+VCP    Y      G+    +    +CI C  CE  C  DA+    +
Sbjct: 58  DKCVDC--GKCVDVCPAGVHYMTTNENGKQVHRVDRGVDCIGCRKCEEVCISDALDIMGK 115

Query: 61  P 61
            
Sbjct: 116 D 116


>gi|224585846|ref|YP_002639645.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224470374|gb|ACN48204.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 300

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CPV+          +     +CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCADPGCLKACPVEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|188995523|ref|YP_001929775.1| ferredoxin [Porphyromonas gingivalis ATCC 33277]
 gi|188595203|dbj|BAG34178.1| putative electron transport complex RnfABCDGE type B subunit
           [Porphyromonas gingivalis ATCC 33277]
          Length = 290

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C++ C  +      N   I   +C  C  C   CP +AI     P  + 
Sbjct: 218 ACIGCSL--CLKQCQFEAITIENNLSYIDHTKCRMCRKCVEVCPTNAIHELNFPPKKK 273


>gi|159040877|ref|YP_001540129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldivirga maquilingensis IC-167]
 gi|157919712|gb|ABW01139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga
          maquilingensis IC-167]
          Length = 121

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
          + CI C    CV VCP + +   EN    +  D CID   C P CPV+ I 
Sbjct: 25 DICIGC--GACVSVCPTNAWELDENGKARLIWDWCIDDFSCIPVCPVNCIW 73


>gi|119472786|ref|ZP_01614723.1| hypothetical protein ATW7_17552 [Alteromonadales bacterium TW-7]
 gi|119444745|gb|EAW26050.1| hypothetical protein ATW7_17552 [Alteromonadales bacterium TW-7]
          Length = 476

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW-L 67
           CI C    CV+VCP                ECI+CG C   C     K +   GL  +  
Sbjct: 274 CIDCNL--CVQVCPTGIDIRNGLQA-----ECINCGACIDACDGVMDKMEYPRGLISYTT 326

Query: 68  KINSE 72
           + N E
Sbjct: 327 ERNLE 331


>gi|145595045|ref|YP_001159342.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Salinispora tropica CNB-440]
 gi|145304382|gb|ABP54964.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Salinispora tropica CNB-440]
          Length = 85

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          + C  C    C+  CP          L I  D C  C  C   CPV AI+      LE 
Sbjct: 13 DACQGC--GACLLTCPTHAIRPVPGGLVIRADRCTGCLECLEICPVGAIRAAGPRHLEE 69


>gi|77919187|ref|YP_357002.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380]
 gi|77545270|gb|ABA88832.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380]
          Length = 291

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIK 56
             +  E C  C    C+  C      +     G+   +I P  C  CGVC   CP  AI 
Sbjct: 61  AVIRAEKCNGC--GACLVHCRFCAVKKSAEQTGKPIFSIDPVACEGCGVCVYVCPEQAID 118

Query: 57  P 57
            
Sbjct: 119 F 119


>gi|78067038|ref|YP_369807.1| NADH dehydrogenase subunit I [Burkholderia sp. 383]
 gi|115502521|sp|Q39EF3|NUOI_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|77967783|gb|ABB09163.1| NADH dehydrogenase subunit I [Burkholderia sp. 383]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|22299343|ref|NP_682590.1| iron-sulfur cluster binding protein [Thermosynechococcus elongatus
           BP-1]
 gi|22295526|dbj|BAC09352.1| tll1800 [Thermosynechococcus elongatus BP-1]
          Length = 134

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  + C+ C    C  VCP      +     L      CI C  C   CP++AI 
Sbjct: 79  IDEQACVHC--GLCTGVCPTQALTLHPETFQLQFTRSRCIVCEQCVAACPMEAIH 131


>gi|57242614|ref|ZP_00370551.1| iron-sulfur cluster-binding protein napH [Campylobacter upsaliensis
           RM3195]
 gi|57016543|gb|EAL53327.1| iron-sulfur cluster-binding protein napH [Campylobacter upsaliensis
           RM3195]
          Length = 263

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 8   NCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C H  CV +CP     +  G+   +++  ECI CG C   C  DA+  +     + 
Sbjct: 203 KCTKCYH--CVSICPEKQVLWMVGKESASVNSGECIRCGRCIDVCNDDALSFNIFDLRKK 260


>gi|134296425|ref|YP_001120160.1| NADH dehydrogenase subunit I [Burkholderia vietnamiensis G4]
 gi|166918790|sp|A4JGC2|NUOI_BURVG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|134139582|gb|ABO55325.1| NADH dehydrogenase subunit I [Burkholderia vietnamiensis G4]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|322616223|gb|EFY13139.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620200|gb|EFY17070.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623074|gb|EFY19916.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322628364|gb|EFY25152.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322634770|gb|EFY31501.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638664|gb|EFY35359.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640946|gb|EFY37593.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645470|gb|EFY41998.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322651646|gb|EFY48018.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322654453|gb|EFY50775.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661295|gb|EFY57521.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665069|gb|EFY61257.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322667814|gb|EFY63974.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671775|gb|EFY67896.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677180|gb|EFY73244.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322680158|gb|EFY76197.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322685414|gb|EFY81410.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323196051|gb|EFZ81215.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323199929|gb|EFZ85017.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323202472|gb|EFZ87513.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323205774|gb|EFZ90737.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212819|gb|EFZ97629.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218016|gb|EGA02730.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323223261|gb|EGA07601.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323223600|gb|EGA07914.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323231963|gb|EGA16070.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234490|gb|EGA18577.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323237941|gb|EGA22000.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323243457|gb|EGA27476.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249456|gb|EGA33370.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323253764|gb|EGA37591.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256430|gb|EGA40165.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323260754|gb|EGA44358.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323266578|gb|EGA50065.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271303|gb|EGA54729.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 294

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C+   C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDN 155


>gi|320539175|ref|ZP_08038846.1| putative truncated formate dehydrogenase-O, Fe-S subunit
          [Serratia symbiotica str. Tucson]
 gi|320030813|gb|EFW12821.1| putative truncated formate dehydrogenase-O, Fe-S subunit
          [Serratia symbiotica str. Tucson]
          Length = 240

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +          +      CI CG C   CP D  + + E  
Sbjct: 39 KDGCMHCADPGCLKACPSEGAIIQYVNGIVDFQSEHCIGCGYCIAGCPFDVPRMNKEDN 97


>gi|308049947|ref|YP_003913513.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas
           balearica DSM 9799]
 gi|307632137|gb|ADN76439.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas
           balearica DSM 9799]
          Length = 184

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+    CI C  T C++ CPVD     G+    +  D+C  C +C   CPVD I+ 
Sbjct: 107 AYIREAECIGC--TKCIQACPVDAIIGTGKQMHTVLADQCTGCDLCVEPCPVDCIEM 161


>gi|296452037|ref|ZP_06893750.1| possible dihydroorotate oxidase [Clostridium difficile NAP08]
 gi|296879567|ref|ZP_06903548.1| possible dihydroorotate oxidase [Clostridium difficile NAP07]
 gi|296259110|gb|EFH05992.1| possible dihydroorotate oxidase [Clostridium difficile NAP08]
 gi|296429449|gb|EFH15315.1| possible dihydroorotate oxidase [Clostridium difficile NAP07]
          Length = 369

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V    CI CK   CV  C  +   E  + L I  D+C  CG+C   CP  A+
Sbjct: 307 PVVDDNKCIKCK--QCVTSCVYEAL-EVTDKLNIDADKCFGCGLCVTRCPKGAL 357


>gi|290489792|gb|ADD31303.1| NADH-plastoquinone oxidoreductase subunit I protein [Staphylea
           colchica]
          Length = 179

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYNRHELN 136


>gi|317052552|ref|YP_004113668.1| nitroreductase [Desulfurispirillum indicum S5]
 gi|316947636|gb|ADU67112.1| nitroreductase [Desulfurispirillum indicum S5]
          Length = 261

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI----HPDECIDCGVCEPECPVDAIK 56
          M  V ++ C   +   CV VCPV   ++ E             CI CG C   CP DA++
Sbjct: 1  MLQVDSQRCR--RDGHCVSVCPVAIIHQDEQGYPCAREDRAGLCIACGHCVAVCPHDALR 58

Query: 57 PD 58
           +
Sbjct: 59 HE 60


>gi|288931600|ref|YP_003435660.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893848|gb|ADC65385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 159

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C+   C+ VCPV   YE        I  D+C+ C  C   CP+     D
Sbjct: 52  CVQCEDPVCMAVCPVSAIYEDPKTGAKIIDYDKCMGCRSCVLACPIGGALVD 103


>gi|256811300|ref|YP_003128669.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus fervens
           AG86]
 gi|256794500|gb|ACV25169.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus fervens
           AG86]
          Length = 269

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKPDT 59
           Y +  NCI C    C+E+C  D   + +    I+P  C  CG CE  C  +A   IK ++
Sbjct: 63  YKINNNCIKC--GKCLEICQFDAIEDFK----INPILCEGCGACELICEFNAVEPIKRES 116

Query: 60  EPGLELWL 67
               E ++
Sbjct: 117 GYIYEGFV 124


>gi|239628717|ref|ZP_04671748.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518863|gb|EEQ58729.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 617

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V + C+ C+       CP       ++ + I    C  CG+C   C VDAI
Sbjct: 564 IVEDRCVDCRTCINEIGCP--ALVLDQDKVKIDSGLCTGCGLCGQICTVDAI 613


>gi|217970625|ref|YP_002355859.1| cytochrome C oxidase accessory protein CcoG [Thauera sp. MZ1T]
 gi|217507952|gb|ACK54963.1| cytochrome c oxidase accessory protein CcoG [Thauera sp. MZ1T]
          Length = 465

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C    CV+VCP                +CIDCG+C   C 
Sbjct: 261 CIDC--GICVQVCPTGIDIRDGLQY-----QCIDCGLCADACD 296


>gi|256004882|ref|ZP_05429856.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281416910|ref|ZP_06247930.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum JW20]
 gi|255991192|gb|EEU01300.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281408312|gb|EFB38570.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum JW20]
 gi|316941043|gb|ADU75077.1| iron-sulfur cluster-binding protein [Clostridium thermocellum DSM
           1313]
          Length = 142

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   CV+ C        +  +++  ++C+ C  C   CP  A+ P  +  ++ 
Sbjct: 57  SCRHCEEPLCVKGCITGALSVKDGVISVDQNKCVGCFTCILCCPYGAVSPGEKSVIQK 114


>gi|148642145|ref|YP_001272658.1| putative ferredoxin [Methanobrevibacter smithii ATCC 35061]
 gi|148551162|gb|ABQ86290.1| putative ferredoxin [Methanobrevibacter smithii ATCC 35061]
          Length = 415

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V++NC  C      +VCP + F            +C  CG+C   C  ++   D
Sbjct: 322 VSDNC-GCDSCTVEDVCPTNAFKNKRL----DLSKCFGCGMCVHYCKNNSFTMD 370


>gi|189424764|ref|YP_001951941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189421023|gb|ACD95421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 302

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           C  C    C+  C V+ + + +    I +   C+ C  C   CP +
Sbjct: 110 CNHCTEPACLSSCFVNAYTKTKEGAVIYNAKVCVGCRNCMIACPFN 155


>gi|187922588|ref|YP_001894230.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phytofirmans PsJN]
 gi|187713782|gb|ACD15006.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phytofirmans PsJN]
          Length = 85

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCD--VCEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPRDPD 64


>gi|88603099|ref|YP_503277.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188561|gb|ABD41558.1| CoB--CoM heterodisulfide reductase subunit A [Methanospirillum
           hungatei JF-1]
          Length = 671

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + E C  C    CV +CP      GE      + +   +C  CG C   CP  AIK    
Sbjct: 596 IDELCAGC--GMCVNLCPYSALSLGEKNGRTVMVVTEAKCKGCGTCGGFCPGGAIKMQHF 653

Query: 61  PGLELWLKINSEYA 74
              ++  +I++ +A
Sbjct: 654 TTPQIVAQIDAFFA 667


>gi|88660702|gb|ABD48098.1| periplasmic Fe-hydrogenase large subunit [Shewanella
          decolorationis]
          Length = 410

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C  C    C + CP             I  D+C+ CG C   CP  AI
Sbjct: 21 KCKGCD--ACKQFCPTHAINGASGAAHSIDEDKCLSCGQCLINCPFSAI 67


>gi|18976577|ref|NP_577934.1| glutamate synthase subunit alpha [Pyrococcus furiosus DSM 3638]
 gi|18892138|gb|AAL80329.1| glutamate synthase subunit alpha [Pyrococcus furiosus DSM 3638]
          Length = 502

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           CI C    C+  CP   +    +   + I   +C+ C  C   CP DA+
Sbjct: 17 RCIKC--GACIYQCPFGVYKWNADKSDITIDYTKCVGCQRCVVFCPTDAL 64


>gi|15679252|ref|NP_276369.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2622353|gb|AAB85730.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 448

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           T +    CI C    C++VCP D     E+ L I   D+CI CG C   CP  A+  + E
Sbjct: 387 TLIDPRLCIGC--GLCLDVCPEDAISRDESGLMIVDDDKCIHCGACSNICPARAVIFERE 444



 Score = 41.1 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CILC+   C   CPVD               F  I P  CI CG+C   CP DAI
Sbjct: 352 VDTDRCILCEK--CGIHCPVDAIPRTTMKKRSIKGGFTLIDPRLCIGCGLCLDVCPEDAI 409

Query: 56  KPDT 59
             D 
Sbjct: 410 SRDE 413



 Score = 40.0 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+E+CI C    C E+CPVD        + +  D CI C  C   CPVDAI 
Sbjct: 324 VSEDCISC--GICSELCPVDAITLRRGSIEVDTDRCILCEKCGIHCPVDAIP 373



 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
          +CI C    C+E CP             +   +C  CGVCE  CPV++IK + 
Sbjct: 34 SCITC--GACMEACPNKAIRRNRYGGYVVDRAKCNACGVCEMTCPVNSIKIED 84



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   C +VCPV    +    L I P++C  C  C  ECP +AI  D 
Sbjct: 177 CTECR--VCEDVCPVGAIED----LEIDPEKCTLCLKCMRECPSNAIYIDD 221



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ T  C      +CV+ CP +     +         CI CG C   CP  AI
Sbjct: 4  FISTGKCEG--LGECVKACPTEAIRMIDGRA----FSCITCGACMEACPNKAI 50


>gi|84390457|ref|ZP_00991468.1| pyruvate formate-lyase activating enzyme [Vibrio splendidus 12B01]
 gi|84376717|gb|EAP93593.1| pyruvate formate-lyase activating enzyme [Vibrio splendidus 12B01]
          Length = 304

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
            + +  +C  C   DCV  CP       +  +   P  C +C  C   C   
Sbjct: 57  PHTIN-HCNHC--GDCVSGCPSSALSMIDGKVNWDPAACTNCDQCIDVCDHK 105


>gi|116748614|ref|YP_845301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697678|gb|ABK16866.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 990

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 7/51 (13%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV+VCP          EG     I    C  CG C   CP  A
Sbjct: 921 CRGC--GKCVDVCPYGSPQLVEVGEGVFVSQIQEALCKGCGACAVACPTGA 969


>gi|327482947|gb|AEA77354.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in
           Cu oxidation [Vibrio cholerae LMA3894-4]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 7/46 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    CV+VCP                ECI+CG C   C    
Sbjct: 275 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTM 313


>gi|325267342|ref|ZP_08134004.1| ferredoxin [Kingella denitrificans ATCC 33394]
 gi|324981279|gb|EGC16929.1| ferredoxin [Kingella denitrificans ATCC 33394]
          Length = 83

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCD--VCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYAT 75
          I  D E   E   ++ ++Y  
Sbjct: 59 ILID-EEHPESHDELMAKYYK 78


>gi|315654705|ref|ZP_07907611.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii ATCC
           51333]
 gi|315491169|gb|EFU80788.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii ATCC
           51333]
          Length = 245

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 18/75 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 98  EKCVGCEL--CAWACPADAIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEAC 155

Query: 51  PVDAIKPDTEPGLEL 65
           P  A+    +  +  
Sbjct: 156 PTRALTMSNDYEIWD 170


>gi|300856936|ref|YP_003781920.1| anaerobic sulfite reductase subunit A [Clostridium ljungdahlii DSM
           13528]
 gi|300437051|gb|ADK16818.1| anaerobic sulfite reductase subunit A [Clostridium ljungdahlii DSM
           13528]
          Length = 286

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             ++NC+ C    CV  C        +  +  + + C++CG C   C  +A+
Sbjct: 161 FDSDNCVGC--GLCVTNCRQKALQLVDKKIVHNKNLCVECGECVRVCNSNAV 210


>gi|323530020|ref|YP_004232172.1| Pyrogallol hydroxytransferase [Burkholderia sp. CCGE1001]
 gi|323387022|gb|ADX59112.1| Pyrogallol hydroxytransferase [Burkholderia sp. CCGE1001]
          Length = 287

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG-LELWL 67
           C  C    C++V         +  + I PD+          CP  AI  + E    ++W+
Sbjct: 69  CNHCDDAPCMKVGGSAIRKRADGIVIIDPDKARGRKDIVKACPYKAIVWNDELQLPQIWI 128

Query: 68  KINSEYATQW 77
                    W
Sbjct: 129 FDAHLLDQGW 138


>gi|256827985|ref|YP_003156713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577161|gb|ACU88297.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 185

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  CK+  C++ C  +   +      + I  ++C     C   CP   I+ D
Sbjct: 65  PCQHCKNAACIKACTTEAIVKDTETGIVRIMANKCRGSRDCIEACPYGVIQFD 117


>gi|161503327|ref|YP_001570439.1| hypothetical protein SARI_01400 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864674|gb|ABX21297.1| hypothetical protein SARI_01400 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 294

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C+   C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDN 155


>gi|134093260|ref|YP_001109561.1| NADH dehydrogenase subunit I [Populus trichocarpa]
 gi|224102347|ref|XP_002334188.1| predicted protein [Populus trichocarpa]
 gi|224102355|ref|XP_002334190.1| predicted protein [Populus trichocarpa]
 gi|156632621|sp|A4GYX0|NDHI_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|133712122|gb|ABO36765.1| NADH-plastoquinone oxidoreductase SU I [Populus trichocarpa]
 gi|222870343|gb|EEF07474.1| predicted protein [Populus trichocarpa]
 gi|222870345|gb|EEF07476.1| predicted protein [Populus trichocarpa]
          Length = 176

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYNRHELN 136


>gi|110227132|ref|YP_665610.1| NADH dehydrogenase subunit I [Populus alba]
 gi|115502272|sp|Q14FA4|NDHI_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|109945570|dbj|BAE97258.1| NADH dehydrogenase subunit I [Populus alba]
          Length = 176

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYNRHELN 136


>gi|11498862|ref|NP_070091.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649316|gb|AAB89980.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 369

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V +  CI C    C+  CP+             +  ++C+ CGVC P CPV+AI+     
Sbjct: 285 VDSSKCIAC--GICMLRCPMKAVKAKINREPANVEAEKCLGCGVCVPTCPVEAIELVERE 342

Query: 62  GLELW 66
            L+ W
Sbjct: 343 ELQEW 347


>gi|15669492|ref|NP_248302.1| ferredoxin [Methanocaldococcus jannaschii DSM 2661]
 gi|48474331|sp|Q58698|Y1302_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ1302
 gi|1591941|gb|AAB99311.1| photosystem I iron-sulfur center 1 isolog [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 168

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 20/84 (23%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-------------FYEGENFLAIHPDECIDCGVCEPEC 50
           V+ E CI C+   C  VCP                 Y  +    I+P++C+ C  C   C
Sbjct: 53  VIEELCIGCEG--CANVCPTKAIEMIPIEPVKITDNYVKDKIPKINPEKCVYCLYCHDFC 110

Query: 51  PVDAIKPDTEPGL-----ELWLKI 69
           PV ++  +  P       E +++I
Sbjct: 111 PVFSVFNEISPIHPRDVGEEYIEI 134


>gi|333005860|gb|EGK25376.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-272]
 gi|333018896|gb|EGK38189.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-227]
          Length = 192

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
             +   NCI C  T C++ CPVD           +  D C  C +C   CP   I
Sbjct: 110 AVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVISDLCTGCNLCVDPCPTHCI 162


>gi|326200333|gb|ADZ52372.1| NADH dehydrogenase 18 kDa subunit [Asclepias syriaca]
          Length = 173

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLESDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KP--DTEPGLELWLKIN 70
               + E       ++N
Sbjct: 120 SMTEEYELSSYDRHELN 136


>gi|330506904|ref|YP_004383332.1| iron sulfur cluster/nucleotide binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927712|gb|AEB67514.1| iron sulfur cluster/nucleotide binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 284

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++  E CI C    C + C      + E    +    C  CGVC+  CP DA+      
Sbjct: 62  AFIDKEKCIQC--GICQDSCRFGAIADFE----VETPLCEGCGVCQLVCPEDAVDMRDVQ 115

Query: 62  GLELWL 67
             E ++
Sbjct: 116 AGEAYI 121


>gi|325610487|gb|ADZ36438.1| NADH dehydrogenase 18 kDa subunit [Polyspora chrysandra]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|325290297|ref|YP_004266478.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
 gi|324965698|gb|ADY56477.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
          Length = 525

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CILC    C+EVC  V   Y            C++CG C   CP  AI    E
Sbjct: 83  QKCILC--GQCIEVCQNVQTVYGNYELPIKDEIVCVNCGQCTHWCPSGAITEKDE 135


>gi|307352753|ref|YP_003893804.1| coenzyme F420 hydrogenase subunit gamma [Methanoplanus petrolearius
           DSM 11571]
 gi|307155986|gb|ADN35366.1| coenzyme F420 hydrogenase, subunit gamma [Methanoplanus
           petrolearius DSM 11571]
          Length = 314

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C   CPV           I  + CI CG C  +CP      D     E
Sbjct: 246 CMGC--GTCAASCPVRAITMEYGRPNIDREMCIKCGACYAQCPRSEFSFDVINQFE 299


>gi|297538948|ref|YP_003674717.1| NADH-quinone oxidoreductase subunit I [Methylotenera sp. 301]
 gi|297258295|gb|ADI30140.1| NADH-quinone oxidoreductase, chain I [Methylotenera sp. 301]
          Length = 163

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG+CE  CPVD+I
Sbjct: 61  EERCIACKL--CEAVCPAMAITIESEQREDNTRRTTRYDIDLTKCIFCGMCEESCPVDSI 118


>gi|296109066|ref|YP_003616015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295433880|gb|ADG13051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 658

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECIDCG 44
           YV    C  C    C  VCP++   E +                      I  D CI C 
Sbjct: 240 YVDESKCTGC--GACASVCPIEVPNEFDLGLGVRKAIYVPFPQAVPLVYTIDMDYCIKCE 297

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C   AI  + +P    
Sbjct: 298 LCSKVCGPGAIDYNQKPEEIK 318



 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E C  C+   C +VCP +        G    +++   C  CG C   CP  A++
Sbjct: 579 VDEEICGGCE--ICAQVCPYNAISYVEKDGHLVASVNDIACKGCGSCVAACPSGAMQ 633


>gi|269962653|ref|ZP_06176998.1| FixG-related protein [Vibrio harveyi 1DA3]
 gi|269832576|gb|EEZ86690.1| FixG-related protein [Vibrio harveyi 1DA3]
          Length = 473

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 274 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 324


>gi|291613112|ref|YP_003523269.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291583224|gb|ADE10882.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 291

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C  VCPV    +  +   +   + CI    C   CP      +     
Sbjct: 104 CQQCEAAPCETVCPVGATNHTEDGLNSQIYNRCIGSRYCSANCPYKVRYFNWYDYP 159


>gi|289207901|ref|YP_003459967.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp. K90mix]
 gi|288943532|gb|ADC71231.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp. K90mix]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 20/101 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPALAITIDSEERADGTRRTTRYDIDLFKCIFCGFCEEACPVDSI 117

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
               E  +  +   N         I TK + L    + +  
Sbjct: 118 ---VETHIFEYHFENRG-----EQIMTKDKLLAIGDRFEKE 150


>gi|254520968|ref|ZP_05133023.1| ferredoxin [Stenotrophomonas sp. SKA14]
 gi|219718559|gb|EED37084.1| ferredoxin [Stenotrophomonas sp. SKA14]
          Length = 137

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             +V  +CI C  T C++ CPVD    G +    +  D C  C +C P CPVD I+ 
Sbjct: 80  ALIVEADCIGC--TKCIQACPVDAIVGGAKYMHTVIADLCTGCELCIPPCPVDCIEM 134


>gi|289065143|ref|YP_003434029.1| NADH-plastoquinone oxidoreductase subunit I [Typha latifolia]
 gi|281371826|gb|ADA63753.1| NADH-plastoquinone oxidoreductase subunit I [Typha latifolia]
          Length = 180

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|170784788|ref|YP_001718704.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum]
 gi|156598753|gb|ABU85631.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum]
 gi|157267536|gb|ABV26529.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELSTY 130


>gi|218780821|ref|YP_002432139.1| indolepyruvate ferredoxin oxidoreductase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762205|gb|ACL04671.1| Indolepyruvate ferredoxin oxidoreductase, alpha/partial beta
           subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 644

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ENC  C    C  V  CP   + E +    I    C  CG+C   CP  AI
Sbjct: 590 ENC-GCNK-LCTRVFRCPGLRWDEEKKVATIDEVICAGCGMCAAICPSGAI 638


>gi|139437056|ref|ZP_01771216.1| Hypothetical protein COLAER_00191 [Collinsella aerofaciens ATCC
          25986]
 gi|133776703|gb|EBA40523.1| Hypothetical protein COLAER_00191 [Collinsella aerofaciens ATCC
          25986]
          Length = 238

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFL------AIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CP D      +        +I    CI CG CE  CP++AI
Sbjct: 38 ELCIAC--GACGVACPADAIRMDTDLAADTITWSIDYGRCIFCGRCEEACPMEAI 90


>gi|187921197|ref|YP_001890229.1| formate dehydrogenase subunit beta [Burkholderia phytofirmans PsJN]
 gi|187719635|gb|ACD20858.1| formate dehydrogenase, beta subunit [Burkholderia phytofirmans
           PsJN]
          Length = 310

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
            + C+ C+   C++ CP            +   E  CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYTNGIVDFHEENCIGCGYCITGCPFN 146


>gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 634

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           ++  + C  C    C + CP +    G+  + I   D+C  CG C   CP  
Sbjct: 562 HIQPDKCKAC--GTCFKQCPAEAIEGGKKRIHIIDQDKCTKCGTCLDVCPKQ 611


>gi|255746782|ref|ZP_05420728.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio cholera CIRS 101]
 gi|262155863|ref|ZP_06028985.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio cholerae INDRE 91/1]
 gi|262166906|ref|ZP_06034627.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio cholerae RC27]
 gi|255735539|gb|EET90938.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio cholera CIRS 101]
 gi|262024677|gb|EEY43357.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio cholerae RC27]
 gi|262030315|gb|EEY48957.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio cholerae INDRE 91/1]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 7/46 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    CV+VCP                ECI+CG C   C    
Sbjct: 275 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTM 313


>gi|75300830|sp|Q8HVM2|NDHI_PSIGN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300855|sp|Q8HVP7|NDHI_MARCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300871|sp|Q8HVR3|NDHI_HYMLE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300876|sp|Q8HVR8|NDHI_HELBG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460592|gb|AAN61736.1| NADH dehydrogenase subunit I [Helenium bigelovii]
 gi|24460602|gb|AAN61741.1| NADH dehydrogenase subunit I [Hymenoxys lemmonii]
 gi|24460634|gb|AAN61757.1| NADH dehydrogenase subunit I [Marshallia caespitosa]
 gi|24460684|gb|AAN61782.1| NADH dehydrogenase subunit I [Psilostrophe gnaphalodes]
          Length = 166

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|83719559|ref|YP_441622.1| NADH dehydrogenase subunit I [Burkholderia thailandensis E264]
 gi|167580430|ref|ZP_02373304.1| NADH dehydrogenase subunit I [Burkholderia thailandensis TXDOH]
 gi|167618539|ref|ZP_02387170.1| NADH dehydrogenase subunit I [Burkholderia thailandensis Bt4]
 gi|257139682|ref|ZP_05587944.1| NADH dehydrogenase subunit I [Burkholderia thailandensis E264]
 gi|115502522|sp|Q2SZM7|NUOI_BURTA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|83653384|gb|ABC37447.1| NADH dehydrogenase I, I subunit [Burkholderia thailandensis E264]
          Length = 162

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|89280690|ref|YP_514907.1| NADH dehydrogenase subunit I [Solanum lycopersicum]
 gi|91209043|ref|YP_538904.1| NADH dehydrogenase subunit I [Solanum bulbocastanum]
 gi|108773183|ref|YP_635693.1| NADH dehydrogenase subunit I [Solanum tuberosum]
 gi|110287700|sp|Q2MI46|NDHI_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|110287705|sp|Q2MID3|NDHI_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|110287706|sp|Q2VEC7|NDHI_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|82754677|gb|ABB90091.1| NADH dehydrogenase subunit I [Solanum tuberosum]
 gi|84371950|gb|ABC56268.1| NADH-plastoquinone oxidoreductase subunit I [Solanum bulbocastanum]
 gi|84372038|gb|ABC56355.1| NADH-plastoquinone oxidoreductase subunit I [Solanum lycopersicum]
 gi|88656858|gb|ABD47111.1| NADH-plastoquinone oxidoreductase subunit I [Solanum tuberosum]
 gi|89241726|emb|CAJ32449.1| NADH dehydrogenase subunit I [Solanum lycopersicum]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|81301632|ref|YP_398927.1| NADH dehydrogenase subunit I [Nicotiana tomentosiformis]
 gi|110287702|sp|Q33BW8|NDHI_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|80750991|dbj|BAE48067.1| NADH dehydrogenase 18kD subunit [Nicotiana tomentosiformis]
          Length = 167

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|45358285|ref|NP_987842.1| hypothetical protein MMP0722 [Methanococcus maripaludis S2]
 gi|44921043|emb|CAF30278.1| Conserved Hypothetical Archael Protein [Methanococcus maripaludis
           S2]
          Length = 210

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V E CI CK   C  VCP +    E +    I    C+ C  CE +CP +AI  
Sbjct: 156 VNEKCISCK--ICENVCPAEAVKVENKQNAEIFKKHCLLCLKCELKCPTNAITY 207


>gi|218767189|ref|YP_002341701.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|121051197|emb|CAM07468.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|319411394|emb|CBY91805.1| putative ferredoxin [Neisseria meningitidis WUE 2594]
 gi|325129159|gb|EGC52007.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          N1568]
          Length = 83

 Score = 42.3 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCD--VCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++ ++Y
Sbjct: 59 ILID-EEYPETHDELMAKY 76


>gi|300704345|ref|YP_003745948.1| iron-sulfur 4fe-4S ferredoxin transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072009|emb|CBJ43339.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein [Ralstonia
           solanacearum CFBP2957]
          Length = 487

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+VCP                ECI CG C   C     K     GL  +
Sbjct: 275 ACVDCS--ICVQVCPTGIDIRQGLQY-----ECIGCGACIDACDQVMDKMRYPRGLIRY 326


>gi|299067332|emb|CBJ38529.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein [Ralstonia
           solanacearum CMR15]
          Length = 487

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+VCP                ECI CG C   C     K     GL  +
Sbjct: 275 ACVDCS--ICVQVCPTGIDIRQGLQY-----ECIGCGACIDACDQVMDKMRYPRGLIRY 326


>gi|222111964|ref|YP_002554228.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|221731408|gb|ACM34228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 687

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 10  ILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           + C    CV++C  +          + ++P  C+ CG C   CP  A+        ++  
Sbjct: 306 VGCN--ACVDICSAEAISSDPVRQQVVVNPHLCVGCGACTTVCPTGAMGYAYPSAQDMGT 363

Query: 68  KINSEYATQ 76
           +I +  +T 
Sbjct: 364 RIRTLLSTY 372



 Score = 41.5 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPG 62
           +  + C  C    CV  CP +          I    C     C   C V  AI+ + E  
Sbjct: 180 IDLDLCTRCN--ACVTACPENAIGLD---YQIDMTACTGHRDCVKACAVAGAIRFEREAE 234

Query: 63  LE 64
           ++
Sbjct: 235 VQ 236



 Score = 41.1 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV  CP     +      L      C+ CG+CE  CP +AI
Sbjct: 553 VDKDRCTLCL--SCVSACPAGALQDNPQAPQLRFTEQNCVQCGLCERTCPENAI 604


>gi|207723231|ref|YP_002253630.1| iron-sulfur 4fe-4s ferredoxin protein [Ralstonia solanacearum
           MolK2]
 gi|206588427|emb|CAQ35390.1| iron-sulfur 4fe-4s ferredoxin protein [Ralstonia solanacearum
           MolK2]
          Length = 487

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+VCP                ECI CG C   C     K     GL  +
Sbjct: 275 ACVDCS--ICVQVCPTGIDIRQGLQY-----ECIGCGACIDACDQVMDKMRYPRGLIRY 326


>gi|197124200|ref|YP_002136151.1| formate dehydrogenase subunit beta [Anaeromyxobacter sp. K]
 gi|196174049|gb|ACG75022.1| formate dehydrogenase, beta subunit [Anaeromyxobacter sp. K]
          Length = 291

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V + C+ C    C++ CP      +  N +     D+CI CG C+  CP +  +   + 
Sbjct: 94  IVKDGCLHCAEPGCLKACPAPGAIVQYANGIVDFQQDQCIGCGYCQTGCPFNIPRYSMKD 153

Query: 62  G 62
            
Sbjct: 154 Q 154


>gi|148643126|ref|YP_001273639.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445363|ref|ZP_03607878.1| hypothetical protein METSMIALI_00991 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350076|ref|ZP_05975493.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|148552143|gb|ABQ87271.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|222434928|gb|EEE42093.1| hypothetical protein METSMIALI_00991 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860862|gb|EFC93160.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 471

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  + C+ C    C ++CP D   +      +  D+C  CG C+  CP +A   +
Sbjct: 408 FIEQQLCMHC--GLCYDICPYDAINKNNGKFEVDEDKCKYCGACKNACPANAFMFE 461



 Score = 40.7 bits (94), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +T+ CI C    C EVCP +        +++  D+CI C  C   CPV+AI 
Sbjct: 344 ITDECISC--GICCEVCPKEAITLHRGTISVDLDKCILCENCGVYCPVNAIP 393



 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
          +C+ C    C + CP +  +        +   +C  CG+C   CP+D IK + 
Sbjct: 32 SCLTC--GLCYKNCPSNAIFINSYGGYVVDRAKCSGCGMCMYNCPIDNIKIED 82


>gi|189424000|ref|YP_001951177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189420259|gb|ACD94657.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 188

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C +  CV+ CP       E +  + +   +C+ C  C   CP  A
Sbjct: 59  CMHCDNPPCVDGCPTCASQRREKDGIVFVEDSKCVGCLACVMACPYGA 106


>gi|159043218|ref|YP_001532012.1| nitrogen fixation protein fixG [Dinoroseobacter shibae DFL 12]
 gi|157910978|gb|ABV92411.1| nitrogen fixation protein fixG [Dinoroseobacter shibae DFL 12]
          Length = 480

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCP+               ECI CG+C   C     K     GL  +L 
Sbjct: 260 CIDC--MACVNVCPMGIDIRNGQ-----QMECITCGLCIDACDDIMEKIGKPRGLIDYLA 312

Query: 69  INSE 72
           ++ E
Sbjct: 313 LSDE 316


>gi|89901860|ref|YP_524331.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346597|gb|ABD70800.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 545

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 6   TENC-------ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T+ C         C  T C++VC V       N + I P  C  C  C   CP  A+   
Sbjct: 166 TDLCAHGVSGFQGC--TRCLDVCSVQAIASAGNTVRIDPYLCQGCATCTLACPTGALSFK 223

Query: 59  TEPGL 63
                
Sbjct: 224 FPTRD 228



 Score = 36.9 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV +CP       +     L      C+ CG+C   CP +A+
Sbjct: 417 VNAQRCTLCF--ACVNLCPTSALKAVDAKTQQLVFQESACVQCGLCVVGCPEEAL 469


>gi|71907446|ref|YP_285033.1| formate dehydrogenase beta subunit [Dechloromonas aromatica RCB]
 gi|71847067|gb|AAZ46563.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Dechloromonas aromatica RCB]
          Length = 295

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 94  KDGCMHCSDPGCLKACPSPGAIIQYSNGIVDFHQENCIGCGYCVTGCPFN 143


>gi|17545999|ref|NP_519401.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17428294|emb|CAD14982.1| probable iron-sulfur 4fe-4s ferredoxin transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 477

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+VCP                ECI CG C   C     K     GL  +
Sbjct: 265 ACVDCS--ICVQVCPTGIDIRQGLQY-----ECIGCGACIDACDQVMDKMRYPRGLIRY 316


>gi|83748674|ref|ZP_00945691.1| Iron-Sulfur 4Fe-4S Ferredoxin [Ralstonia solanacearum UW551]
 gi|207743371|ref|YP_002259763.1| iron-sulfur 4fe-4s ferredoxin protein [Ralstonia solanacearum
           IPO1609]
 gi|83724636|gb|EAP71797.1| Iron-Sulfur 4Fe-4S Ferredoxin [Ralstonia solanacearum UW551]
 gi|206594768|emb|CAQ61695.1| iron-sulfur 4fe-4s ferredoxin protein [Ralstonia solanacearum
           IPO1609]
          Length = 487

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    CV+VCP                ECI CG C   C     K     GL  +
Sbjct: 275 ACVDCS--ICVQVCPTGIDIRQGLQY-----ECIGCGACIDACDQVMDKMRYPRGLIRY 326


>gi|116749408|ref|YP_846095.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116698472|gb|ABK17660.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1021

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 7/56 (12%)

Query: 7    ENCILCKHTDCVEVCPVDCFYEGE-----NFLAIHPDECIDCGVCEPECPVDAIKP 57
            E CI C    C  +CP       +              C  CGVC   CP  AI  
Sbjct: 949  EACIGC--GLCEALCPFGAIRLHKVIGKGFRAETISASCKGCGVCSASCPQKAIDM 1002



 Score = 38.4 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 22/78 (28%), Gaps = 25/78 (32%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECID-- 42
           YV +  CI C    C E CP                  V           I  D CI   
Sbjct: 108 YVDSSKCIAC--GVCAEKCPKKVDDLFNEGLGKRKAAYVKYPQAVPLKYVIDEDNCIYFK 165

Query: 43  ---CGVCEPECPVDAIKP 57
              C  CE  CP  A+  
Sbjct: 166 SGKCRACEKFCPAGAVDF 183


>gi|46201178|ref|ZP_00208002.1| COG1013: Pyruvate:ferredoxin oxidoreductase and related
           2-oxoacid:ferredoxin oxidoreductases, beta subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 469

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           C  C    C +VCP     +      I     +C+DC +C   C    I  D
Sbjct: 51  CRQCGDPKCAQVCPSGALDKDGGNGVIGWDAAKCVDCLLCTAGCVYGGIAVD 102


>gi|313681402|ref|YP_004059140.1| NADH dehydrogenase subunit i [Sulfuricurvum kujiense DSM 16994]
 gi|313154262|gb|ADR32940.1| NADH dehydrogenase subunit I [Sulfuricurvum kujiense DSM 16994]
          Length = 207

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C ++C  DC                  +I+   CI CG C   CP  AI 
Sbjct: 93  ERCIGC--GLCEKICISDCIRMDTRIDENSRKEVTEYSINLGRCIFCGYCAEVCPELAIV 150

Query: 57  P 57
            
Sbjct: 151 H 151


>gi|330850797|ref|YP_004376475.1| NADH dehydrogenase subunit I [Olea europaea subsp. europaea]
 gi|291059308|gb|ADD72144.1| NADH-plastoquinone oxidoreductase subunit I [Olea europaea]
 gi|328795487|emb|CBR30369.1| NADH dehydrogenase subunit I [Olea europaea subsp. europaea]
          Length = 170

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYNRHELN 136


>gi|302348066|ref|YP_003815704.1| Ferredoxin like protein [Acidilobus saccharovorans 345-15]
 gi|302328478|gb|ADL18673.1| Ferredoxin like protein [Acidilobus saccharovorans 345-15]
          Length = 101

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 2  TYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++V +   C  C    C+ +CP  C+    + +    + C++CG C   CP+DAI  + 
Sbjct: 30 PHIVVDYTKCEKCPAKPCIYLCPAGCYTLAGDRIVFSYEGCVECGTCRVICPMDAITWNY 89

Query: 60 E 60
           
Sbjct: 90 P 90


>gi|300310950|ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1]
 gi|300073735|gb|ADJ63134.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI-KPDTE 60
           V+ E  CI C  T C++ CPVD      +    +    C  C +C   CPVD I   +  
Sbjct: 86  VIDEAVCIGC--TLCIQACPVDAIAGAAKQMHTVIDALCTGCDLCVAPCPVDCISMVEVT 143

Query: 61  PGLELWLKINSEYAT 75
           PG   W     E A 
Sbjct: 144 PGRTGWQAWRQEQAD 158


>gi|291451999|ref|ZP_06591389.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces albus J1074]
 gi|291354948|gb|EFE81850.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces albus J1074]
          Length = 244

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 72  EKCVGCEL--CAWACPADAIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEAC 129

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 130 PTRALTM 136


>gi|290489790|gb|ADD31302.1| NADH-plastoquinone oxidoreductase subunit I protein [Quercus nigra]
          Length = 165

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPMDLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|290489780|gb|ADD31297.1| NADH-plastoquinone oxidoreductase subunit I protein [Gunnera
           manicata]
          Length = 167

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETNIRKKQLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|220933486|ref|YP_002512385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994796|gb|ACL71398.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. HL-EbGR7]
          Length = 84

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G+    I P  C +C        C   CPVD 
Sbjct: 1  MALMITDECINCD--VCEPECPNGAISPGDEIYVIDPALCTECVGHYDTPQCVEVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D    +E    + ++Y
Sbjct: 59 IPKD-PDMVESKEALMAKY 76


>gi|254449088|ref|ZP_05062540.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
          HTCC5015]
 gi|198261280|gb|EDY85573.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
          HTCC5015]
          Length = 93

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI------DCGVCEPECPVDA 54
          M   +T+ CI C    C  VCP    Y+GE    I PD C           C   CPVD 
Sbjct: 1  MALKITDECINCD--VCEPVCPNQAIYQGEEIFEIDPDLCTECVGHYGEPQCVEICPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E   ++  +Y
Sbjct: 59 IPKD-ENKPETEAELMLKY 76


>gi|168188258|gb|ACA14518.1| NADH dehydrogenase subunit I [Dasyphyllum reticulatum]
          Length = 166

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|167836057|ref|ZP_02462940.1| NADH dehydrogenase subunit I [Burkholderia thailandensis MSMB43]
          Length = 162

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESQTREDNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|167585980|ref|ZP_02378368.1| NADH dehydrogenase subunit I [Burkholderia ubonensis Bu]
          Length = 162

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 60  EERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117


>gi|126700799|ref|YP_001089696.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile 630]
 gi|254976768|ref|ZP_05273240.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-66c26]
 gi|255094153|ref|ZP_05323631.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CIP 107932]
 gi|255102322|ref|ZP_05331299.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-63q42]
 gi|255308215|ref|ZP_05352386.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile ATCC 43255]
 gi|255315904|ref|ZP_05357487.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-76w55]
 gi|255518564|ref|ZP_05386240.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-97b34]
 gi|255651684|ref|ZP_05398586.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-37x79]
 gi|260684718|ref|YP_003216003.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CD196]
 gi|260688376|ref|YP_003219510.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile R20291]
 gi|306521483|ref|ZP_07407830.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-32g58]
 gi|115252236|emb|CAJ70076.1| Dihydroorotate dehydrogenase, catalytic subunit [Clostridium
           difficile]
 gi|260210881|emb|CBA66039.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CD196]
 gi|260214393|emb|CBE06800.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile R20291]
          Length = 369

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V    CI CK   CV  C  +   E  + L I  D+C  CG+C   CP  A+
Sbjct: 307 PVVDDNKCIKCK--QCVTSCVYEAL-EVTDKLNIDADKCFGCGLCVTRCPKGAL 357


>gi|75300839|sp|Q8HVN1|NDHI_PEROV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460666|gb|AAN61773.1| NADH dehydrogenase subunit I [Perymeniopsis ovalifolia]
          Length = 166

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGHCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|85860699|ref|YP_462901.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB]
 gi|85723790|gb|ABC78733.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB]
          Length = 920

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V    C+ C    C+ VC                 ++P  C   GVC   CP  A+    
Sbjct: 836 VDEGKCVSC--GACITVCSYGAIDFYESLRGRRARVNPVLCKGDGVCNTVCPTSAVSLKH 893

Query: 60  EPGLELWLKINS 71
               E+W +I++
Sbjct: 894 FTDEEIWNQIDA 905


>gi|33239635|ref|NP_874577.1| NADH dehydrogenase subunit I [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81712853|sp|Q7VE31|NDHI_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|33237160|gb|AAP99229.1| NAD(P)H-quinone oxidoreductase subunit I [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 219

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW 66
               E  L  +
Sbjct: 120 SMTEEYELAAF 130


>gi|15678429|ref|NP_275544.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621463|gb|AAB84907.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 337

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + CI C    CV+ CPV              D C+ CG C   CPVDAI
Sbjct: 199 VLEDRCIGC--GLCVDECPVGVIEPEVPAPVKILDGCVFCGRCRGVCPVDAI 248



 Score = 40.4 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECP 51
          +  + C+ C +  C   CP +    GE           + I+  +CI C  C   CP
Sbjct: 12 IDEDKCVRCSY--CARACPTEAIKYGEILPRSVVGGKAVVINQRDCIGCMTCTRVCP 66



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CPVD        + +  D CI CG C+  CPV A++ + E  
Sbjct: 284 CQRC--GVCVNHCPVDAMTLNTE-VEVDADRCILCGECQDICPVTAVRLNLEDD 334



 Score = 37.3 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 2   TYVVTEN-CILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V+ +  CI C    C  VCP        +      I P  C  C  C   CP  AI+ 
Sbjct: 47  AVVINQRDCIGC--MTCTRVCPSRGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAIRY 104

Query: 58  DT-EPGLELWLKIN 70
            + +   E + K+N
Sbjct: 105 SSRKRAYENFSKLN 118


>gi|324115610|gb|EGC09548.1| formate dehydrogenase [Escherichia coli E1167]
          Length = 300

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP +          +     +CI CG C   CP D  + + E  
Sbjct: 97  KDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDN 155


>gi|323366672|gb|ADX43805.1| NADH dehydrogenase subunit I [Eutrochium maculatum]
          Length = 166

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|307595430|ref|YP_003901747.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307550631|gb|ADN50696.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 108

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + CI C    CV VCP       EN    +  D C D   C P CPV+ I   +E  
Sbjct: 13  VDQDICIGC--GACVSVCPYQALELDENGKARLIWDLCKDDFSCVPVCPVNCIWKTSEAP 70

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAK--MDGVKQKYE 101
                      A    N     + L  A K   +  K KY+
Sbjct: 71  DS---------AKGKANWYRFSKPLSDAEKKEFEDWKAKYK 102


>gi|291556696|emb|CBL33813.1| Fe-S-cluster-containing hydrogenase components 2 [Eubacterium
           siraeum V10Sc8a]
          Length = 144

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   CV+ C      + +  ++     C+ C  C   CP   I
Sbjct: 59  CRHCETPLCVKSCITGALSQKDGVISCDESRCVGCYTCVLACPYGCI 105


>gi|282164022|ref|YP_003356407.1| putative flavoprotein [Methanocella paludicola SANAE]
 gi|282156336|dbj|BAI61424.1| putative flavoprotein [Methanocella paludicola SANAE]
          Length = 214

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--P 57
           M Y +    C  C+     E CP +   +      I   +C  CG C   C   AI    
Sbjct: 119 MPYTIDRSKCKSCEVCPPRESCPNEAITDQ-----IDLLKCQGCGTCVDLCEYGAISGGG 173

Query: 58  DTEPGLELWLKINSEY 73
           +    +      N++ 
Sbjct: 174 EVPLKIRKVDARNTKM 189


>gi|237712153|ref|ZP_04542634.1| F420H2:quinone oxidoreductase [Bacteroides sp. 9_1_42FAA]
 gi|229453474|gb|EEO59195.1| F420H2:quinone oxidoreductase [Bacteroides sp. 9_1_42FAA]
          Length = 407

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVD 53
          +   +C  C    CV+ CP  C       EG  +  +  ++CIDCG+CE  CP  
Sbjct: 5  IDKHSCCGCS--SCVQKCPKKCISMYEDDEGFLYPVVDKEKCIDCGLCEIVCPCH 57


>gi|237737091|ref|ZP_04567572.1| anaerobic sulfite reduction protein C [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420953|gb|EEO36000.1| anaerobic sulfite reduction protein C [Fusobacterium mortiferum
           ATCC 9817]
          Length = 321

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    CV  C                    +CI CG C   CP  A
Sbjct: 170 PDRCISC--GACVRACKKKSTGALTSVNYRPQRDHQKCIGCGECVINCPNMA 219


>gi|284034161|ref|YP_003384092.1| NADH-quinone oxidoreductase subunit I [Kribbella flavida DSM 17836]
 gi|283813454|gb|ADB35293.1| NADH-quinone oxidoreductase, chain I [Kribbella flavida DSM 17836]
          Length = 182

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------------NFLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y                       I+   CI CG+C   C
Sbjct: 56  EKCIGCEL--CAWACPADAIYVEGADNTEGGRMSPGERYGRVYQINYLRCILCGLCIEAC 113

Query: 51  PVDAIKP 57
           P  A+  
Sbjct: 114 PTRALTM 120


>gi|225386711|ref|ZP_03756475.1| hypothetical protein CLOSTASPAR_00459 [Clostridium asparagiforme
           DSM 15981]
 gi|225047189|gb|EEG57435.1| hypothetical protein CLOSTASPAR_00459 [Clostridium asparagiforme
           DSM 15981]
          Length = 620

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  + C+ C+       CP       +  + I    C  CG+C   C V AI+ +
Sbjct: 566 IDPDRCVHCRTCITEIGCP--ALVLDDGQVKIESGLCTGCGLCGRICSVGAIEEE 618


>gi|170759371|ref|YP_001788237.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3
          str. Loch Maree]
 gi|169406360|gb|ACA54771.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3
          str. Loch Maree]
          Length = 247

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  E C  C    CV  C        +     I  + C   G C PECP  AIK      
Sbjct: 8  IDKEKCNGC--GLCVTACHEGAIELIDGRAVLISDEYCDGLGDCLPECPTGAIKIVEREA 65

Query: 63 LELWLKINSEYATQWPNITTKKESLP 88
           E   ++  +       +   KE +P
Sbjct: 66 AEYNEELVEKRMAMKKPVEENKEKMP 91


>gi|158520328|ref|YP_001528198.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158509154|gb|ABW66121.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 303

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 11  LCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C    DCVE C  D  +       +    C+ CG C   CP + I  
Sbjct: 141 GCLGFGDCVEACAYDAIHVINGLAVVDYTACVGCGACAKACPRNIITM 188


>gi|227831507|ref|YP_002833287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|229580456|ref|YP_002838856.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.G.57.14]
 gi|229580894|ref|YP_002839293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.N.15.51]
 gi|284999058|ref|YP_003420826.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
          islandicus L.D.8.5]
 gi|227457955|gb|ACP36642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|228011172|gb|ACP46934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.G.57.14]
 gi|228011610|gb|ACP47371.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.N.15.51]
 gi|284446954|gb|ADB88456.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
          islandicus L.D.8.5]
          Length = 89

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ C+ CK   C +VCP   +    +  + +H + C++CG     CP  AIK     G
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIIVHYERCLECGAALVACPYGAIKFRFPEG 82

Query: 63 LELW 66
             +
Sbjct: 83 GISY 86


>gi|75300906|sp|Q8HVU8|NDHI_CHAPD RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460531|gb|AAN61706.1| NADH dehydrogenase subunit I [Chaetymenia peduncularis]
          Length = 166

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|75300902|sp|Q8HVU4|NDHI_CORPT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460539|gb|AAN61710.1| NADH dehydrogenase subunit I [Coreopsis petrophiloides]
          Length = 166

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWQLETDIRKKRLVNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|34540140|ref|NP_904619.1| ferredoxin [Porphyromonas gingivalis W83]
 gi|34396452|gb|AAQ65518.1| electron transport complex, RnfABCDGE type, B subunit
           [Porphyromonas gingivalis W83]
          Length = 290

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C++ C  +      N   I   +C  C  C   CP +AI     P  + 
Sbjct: 218 ACIGCSL--CLKQCQFEAITIENNLSYIDHTKCRMCRKCVEVCPTNAIHELNFPPKKK 273


>gi|126464494|ref|YP_001045607.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126106305|gb|ABN78835.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 469

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 16/96 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCP+                CI CG+C   C     +     GL  +L 
Sbjct: 251 CIDC--MACVNVCPMGIDIREGQ-----QMACITCGLCIDACDDTMDRIGRPRGLIGYLA 303

Query: 69  INSEYATQ--------WPNITTKKESLPSAAKMDGV 96
           ++ E+  +        W  +   + SL  AA   GV
Sbjct: 304 LSDEHLERAGDAPKPAWKRLFRLRTSL-YAALWAGV 338


>gi|312877539|ref|ZP_07737499.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795680|gb|EFR12049.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +NC  C+    +  CP     E  N + I    C  CG+C+  C   AI
Sbjct: 540 FKINKNCSKCRACMMITGCPAIDEDENGNII-IDSTLCNGCGLCKNFCRYSAI 591


>gi|313184045|ref|YP_004021202.1| NADH-plastoquinone oxidoreductase subunit I [Castanea mollissima]
 gi|309321572|gb|ADO65112.1| NADH-plastoquinone oxidoreductase subunit I [Castanea mollissima]
          Length = 165

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPMDLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|296162861|ref|ZP_06845642.1| formate dehydrogenase, beta subunit [Burkholderia sp. Ch1-1]
 gi|295886898|gb|EFG66735.1| formate dehydrogenase, beta subunit [Burkholderia sp. Ch1-1]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
            + C+ C+   C++ CP            +   E  CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYTNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|291525318|emb|CBK90905.1| Coenzyme F420-reducing hydrogenase, beta subunit [Eubacterium
          rectale DSM 17629]
          Length = 383

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECP 51
          ++ + C  C+   C  VCP  C      YEG     ++ ++C++C +C   CP
Sbjct: 5  IIKDRCTGCEG--CASVCPTKCIDMVQNYEGFFMPQVNSNKCVNCKMCINICP 55


>gi|219674000|ref|YP_002456484.1| NADH-plastoquinone oxidoreductase subunit I [Trifolium
           subterraneum]
 gi|193788969|gb|ACF20565.1| NADH-plastoquinone oxidoreductase subunit I [Trifolium
           subterraneum]
          Length = 162

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|254173159|ref|ZP_04879832.1| hydrogenase-4 component b [Thermococcus sp. AM4]
 gi|214032568|gb|EEB73397.1| hydrogenase-4 component b [Thermococcus sp. AM4]
          Length = 201

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 8/60 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            ++  E CI C    CV  CP D      +       L  +   CI C  C   CP  A+
Sbjct: 47  PHINPEKCIGC--GACVNACPPDALILEWDKEHGVKRLTFNAARCIRCHRCVEVCPTGAM 104


>gi|167577285|ref|ZP_02370159.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           TXDOH]
          Length = 304

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|156972737|ref|YP_001443644.1| NADH:ubiquinone oxidoreductase subunit I [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524331|gb|ABU69417.1| hypothetical protein VIBHAR_00402 [Vibrio harveyi ATCC BAA-1116]
          Length = 473

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C    CV+VCP                ECI+CG C   C     +   E GL  +
Sbjct: 274 CIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACIDACDNTMERMGYEKGLINY 324


>gi|152982452|ref|YP_001353663.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille]
 gi|151282529|gb|ABR90939.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille]
          Length = 699

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  T C++VC  +      + + ++P+ C+ CG C   CP  A+     
Sbjct: 322 VGC--TACIDVCSAEAVSHHGDQIKVNPNLCVGCGACTTVCPSGALAYAYP 370



 Score = 40.7 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +  E C  C    CV+VCP +     +    I   +C     C   C
Sbjct: 196 IDLEACTRCN--ACVDVCPENAI---DLTYQIDLSKCKSHRDCVKAC 237



 Score = 40.0 bits (92), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M  V  ++C LC    CV  CP     +  N   L      C+ CG+CE  CP +AI
Sbjct: 560 MVMVNKDSCTLC--MSCVGACPESALTDNANMPQLRFIEKNCVQCGLCEKTCPENAI 614


>gi|153004871|ref|YP_001379196.1| formate dehydrogenase subunit beta [Anaeromyxobacter sp. Fw109-5]
 gi|152028444|gb|ABS26212.1| formate dehydrogenase, beta subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 290

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +V + C+ C    C++ CP      +  N +     D CI CG C+  CP +
Sbjct: 93  IVKDGCLHCADPGCLKACPAPGAIVQYSNGIVDFKQDNCIGCGYCQTGCPFN 144


>gi|170729202|ref|YP_001763228.1| cytochrome c oxidase accessory protein CcoG [Shewanella woodyi ATCC
           51908]
 gi|169814549|gb|ACA89133.1| cytochrome c oxidase accessory protein CcoG [Shewanella woodyi ATCC
           51908]
          Length = 480

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   + GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDTTMERMGYDKGLIAYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|94269811|ref|ZP_01291569.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93451066|gb|EAT02016.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 668

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  + C+ C +  CV +CP D     +    +  + C+ CG+C   CP  AI
Sbjct: 491 ATVQNDYCVKCLN--CVRLCPYDAPRI-DRTARVPAEHCLACGLCYGACPTGAI 541


>gi|153012163|ref|YP_001381678.1| NADH-plastoquinone oxidoreductase subunit I [Medicago truncatula]
 gi|124360818|gb|ABN08790.1| Alpha-helical ferredoxin [Medicago truncatula]
          Length = 161

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|108802696|ref|YP_636353.1| NADH dehydrogenase subunit I [Eucalyptus globulus subsp. globulus]
 gi|309322499|ref|YP_003934012.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus grandis]
 gi|110287697|sp|Q49KU4|NDHI_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|60460862|gb|AAX21082.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus globulus
           subsp. globulus]
 gi|308223333|gb|ADO23641.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus grandis]
          Length = 167

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP                +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|16764913|ref|NP_460528.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62180140|ref|YP_216557.1| formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167992921|ref|ZP_02574016.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229972|ref|ZP_02655030.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168235675|ref|ZP_02660733.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168241105|ref|ZP_02666037.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168260252|ref|ZP_02682225.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463000|ref|ZP_02696931.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168819340|ref|ZP_02831340.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194447553|ref|YP_002045610.1| formate dehydrogenase iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194470041|ref|ZP_03076025.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194738237|ref|YP_002114594.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197249623|ref|YP_002146468.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197263020|ref|ZP_03163094.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198245597|ref|YP_002215577.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204927752|ref|ZP_03218953.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205352745|ref|YP_002226546.1| formate dehydrogenase-N subunit beta [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856936|ref|YP_002243587.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|238911805|ref|ZP_04655642.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           (formate dehydrogenase-n beta subunit) (fdh-n beta
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|16420091|gb|AAL20487.1| formate dehydrogenase-N, Fe-S beta subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62127773|gb|AAX65476.1| formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194405857|gb|ACF66076.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194456405|gb|EDX45244.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194713739|gb|ACF92960.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195634424|gb|EDX52776.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197213326|gb|ACH50723.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197241275|gb|EDY23895.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197291138|gb|EDY30491.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940113|gb|ACH77446.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204323094|gb|EDZ08290.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205272526|emb|CAR37421.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           (formate dehydrogenase-n beta subunit) (fdh-n beta
           subunit) (anaerobic formate dehydrogenase iron-sulfur
           subunit) [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205328984|gb|EDZ15748.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335361|gb|EDZ22125.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205339571|gb|EDZ26335.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205343628|gb|EDZ30392.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205350550|gb|EDZ37181.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206708739|emb|CAR33065.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           (formate dehydrogenase-n beta subunit) (fdh-n beta
           subunit) (anaerobic formate dehydrogenase iron-sulfur
           subunit) [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261246762|emb|CBG24576.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           (formate dehydrogenase-n beta subunit) (fdh-n beta
           subunit) (anaerobic formate dehydrogenase iron-sulfur
           subunit) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993479|gb|ACY88364.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158097|emb|CBW17594.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           (formate dehydrogenase-n beta subunit) (fdh-n beta
           subunit) (anaerobic formate dehydrogenase iron-sulfur
           subunit) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912557|dbj|BAJ36531.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085946|emb|CBY95720.1| formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta
           subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321224193|gb|EFX49256.1| Formate dehydrogenase N beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322714612|gb|EFZ06183.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129839|gb|ADX17269.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326623322|gb|EGE29667.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326627813|gb|EGE34156.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988457|gb|AEF07440.1| formate dehydrogenase-N beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 294

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C+   C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 97  KDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDN 155


>gi|83312332|ref|YP_422596.1| indolepyruvate oxidoreductase subunit IORA [Magnetospirillum
           magneticum AMB-1]
 gi|82947173|dbj|BAE52037.1| Indolepyruvate oxidoreductase subunit IORA [Magnetospirillum
           magneticum AMB-1]
          Length = 618

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 16/68 (23%)

Query: 2   TY-VVTENCILCKHTDCVEV-CPVDCFYEGENFL------------AIHPDECIDCGVCE 47
            Y V+ E+C  C   +C+ V CP       E+ +             I    C  C +C 
Sbjct: 543 PYKVIDEDCTGC--GNCINVGCPAITVKRSESKVRPDGKVNELKFTTIDTAMCTGCHMCV 600

Query: 48  PECPVDAI 55
             C   AI
Sbjct: 601 ESCGPKAI 608


>gi|127514740|ref|YP_001095937.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126640035|gb|ABO25678.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 475

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+VCP                ECI+CG C   C     +   + GL  +  
Sbjct: 275 CIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGSCIDACDTTMERMGYDKGLIAYTT 327

Query: 69  INS 71
            N 
Sbjct: 328 ENK 330


>gi|330507418|ref|YP_004383846.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanosaeta concilii GP-6]
 gi|328928226|gb|AEB68028.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanosaeta concilii GP-6]
          Length = 594

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 2   TYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + V++ C  C+   CVE  CP   F        I+ + C  CG+C   CP  AI
Sbjct: 540 AFKVSDECQGCR--ICVEYGCPAIEF--EGEMAKIN-NLCTGCGICAQICPSSAI 589


>gi|291531771|emb|CBK97356.1| Fe-S-cluster-containing hydrogenase components 2 [Eubacterium
           siraeum 70/3]
          Length = 144

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   CV+ C      + +  ++     C+ C  C   CP   I
Sbjct: 59  CRHCETPLCVKSCITGALSQKDGVISCDESRCVGCYTCVLACPYGCI 105


>gi|290489782|gb|ADD31298.1| NADH-plastoquinone oxidoreductase subunit I protein [Heuchera
           sanguinea]
          Length = 167

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP            D   +     +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|268610390|ref|ZP_06144117.1| hypothetical protein RflaF_12946 [Ruminococcus flavefaciens FD-1]
          Length = 247

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  +C+ C    C + CP               D C  C  C   CP  AI+ 
Sbjct: 179 VDNSCVGC--GLCAKNCPDKAIEMKGGKPHWIKDACTKCTACINRCPSKAIQY 229


>gi|257076761|ref|ZP_05571122.1| indolepyruvate oxidoreductase, alpha subunit [Ferroplasma
           acidarmanus fer1]
          Length = 628

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 9/59 (15%)

Query: 2   TYVVT-ENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCE--PECPVDAI 55
           TY V  + C  C +  CVE   CP      G     I  + C  CGVC     CP  AI
Sbjct: 570 TYTVNQDKCGKCMN--CVENFACPAISIEGGNIK--IDSNICDGCGVCAEPYVCPFKAI 624


>gi|253998391|ref|YP_003050454.1| NADH dehydrogenase subunit I [Methylovorus sp. SIP3-4]
 gi|313200468|ref|YP_004039126.1| NADH-quinone oxidoreductase subunit I [Methylovorus sp. MP688]
 gi|253985070|gb|ACT49927.1| NADH-quinone oxidoreductase, chain I [Methylovorus sp. SIP3-4]
 gi|312439784|gb|ADQ83890.1| NADH-quinone oxidoreductase, chain I [Methylovorus sp. MP688]
          Length = 163

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  EERCIACKL--CEAVCPAMAITIESEQREDNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 118


>gi|206890943|ref|YP_002249678.1| iron-sulfur cluster-binding protein [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206742881|gb|ACI21938.1| iron-sulfur cluster-binding protein [Thermodesulfovibrio
          yellowstonii DSM 11347]
          Length = 219

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  + C  C    CV  C              I+   C   G C   CP  AI    +  
Sbjct: 9  IDQDRCDGC--GACVNACAEGAIQIVNGKAQLINEIYCDGLGACLGSCPKGAITIVEKEA 66

Query: 63 LELWLKINSE 72
               + N +
Sbjct: 67 QPFDEEANKK 76


>gi|145630703|ref|ZP_01786482.1| formate dehydrogenase, iron-sulfur subunit [Haemophilus influenzae
           R3021]
 gi|144983829|gb|EDJ91279.1| formate dehydrogenase, iron-sulfur subunit [Haemophilus influenzae
           R3021]
          Length = 312

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + C+ C    C++ CP      +  N +     D+CI CG C   CP +  + + E  
Sbjct: 103 KDGCMHCTEPGCLKACPAPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPEDN 161


>gi|158520594|ref|YP_001528464.1| cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3]
 gi|158509420|gb|ABW66387.1| Cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3]
          Length = 291

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  + C  C    C+E+C  +   +      + P  C  CGVC   CP  AI  
Sbjct: 63  IDPDRCTSC--GRCLELCRFEAIRDD---FVVDPIACEGCGVCVDLCPEQAIDF 111


>gi|91777583|ref|YP_552791.1| formate dehydrogenase beta subunit [Burkholderia xenovorans LB400]
 gi|91690243|gb|ABE33441.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Burkholderia xenovorans LB400]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
            + C+ C+   C++ CP            +   E  CI CG C   CP +
Sbjct: 97  KDGCMHCEDPGCLKACPSPGAIVQYTNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|58581545|ref|YP_200561.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426139|gb|AAW75176.1| ferredoxin II [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 156

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V  +CI C  T C+  CPVD    G ++   +    C  C +C P CPVD I
Sbjct: 98  AWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCI 150


>gi|91214191|ref|YP_538814.1| NADH dehydrogenase subunit I [Glycine max]
 gi|110287707|sp|Q2PMN6|NDHI_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|83595792|gb|ABC25173.1| NADH-plastoquinone oxidoreductase subunit I [Glycine max]
          Length = 163

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 15/77 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP+D                    +I    CI CG C   CP + +
Sbjct: 62  DKCIACE--VCVRVCPIDLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCIEYCPTNCL 119

Query: 56  KPDTEPGLELW--LKIN 70
               E  L  +   ++N
Sbjct: 120 SMTEEYELSTYDRHELN 136


>gi|83590255|ref|YP_430264.1| cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC
           39073]
 gi|83573169|gb|ABC19721.1| Cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC
           39073]
          Length = 287

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C+EVC  +   E    L ++P  C  CG C+  CP  AI  +       ++
Sbjct: 68  CTGC--GRCLEVCRYEAIKE----LRVNPVFCEGCGACKLACPSGAITMEPNLAGYWYI 120


>gi|77458924|ref|YP_348430.1| formate dehydrogenase beta subunit [Pseudomonas fluorescens Pf0-1]
 gi|77382927|gb|ABA74440.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Pseudomonas fluorescens Pf0-1]
          Length = 311

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + C+ C    C+  CP      +  N +     D CI CG C   CP +
Sbjct: 93  KDGCMHCAEPGCLAACPSPGAIIKHANGIVDFDQDHCIGCGYCITGCPFN 142


>gi|88860891|ref|ZP_01135527.1| putative iron-sulfur cluster-binding protein FixG
           [Pseudoalteromonas tunicata D2]
 gi|88817104|gb|EAR26923.1| putative iron-sulfur cluster-binding protein FixG
           [Pseudoalteromonas tunicata D2]
          Length = 460

 Score = 41.9 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CVEVCP                ECI+CG+C   C     K   E  L  +  
Sbjct: 261 CVDCNL--CVEVCPAGIDIRNGLQY-----ECINCGLCIDACNQTMEKFGYEKDLIKYTS 313

Query: 69  IN 70
            N
Sbjct: 314 EN 315


>gi|332560813|ref|ZP_08415131.1| electron transport complex protein rnfB [Rhodobacter sphaeroides
           WS8N]
 gi|332274611|gb|EGJ19927.1| electron transport complex protein rnfB [Rhodobacter sphaeroides
           WS8N]
          Length = 188

 Score = 41.9 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  ++C  C    C + CP D           +  D CI C  C   CP +AI    +
Sbjct: 106 AFIFEDHCTGC--MRCFKRCPTDAIIGANRQIHTVVTDACIGCNACIEACPTEAIVARVK 163

Query: 61  PGLEL 65
           P    
Sbjct: 164 PKTLK 168


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.141    0.522 

Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,338,979,250
Number of Sequences: 14124377
Number of extensions: 51262070
Number of successful extensions: 314742
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 8652
Number of HSP's successfully gapped in prelim test: 12937
Number of HSP's that attempted gapping in prelim test: 248187
Number of HSP's gapped (non-prelim): 50829
length of query: 113
length of database: 4,842,793,630
effective HSP length: 81
effective length of query: 32
effective length of database: 3,698,719,093
effective search space: 118359010976
effective search space used: 118359010976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 76 (33.8 bits)