HHsearch alignment for GI: 254780417 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=99.84 E-value=2.8e-20 Score=150.72 Aligned_cols=146 Identities=15% Similarity=0.234 Sum_probs=108.6
Q ss_pred HCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 13899869748785099976789864873025302202488856998052012104543344102467898507866446
Q gi|254780417|r 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVK 92 (188)
Q Consensus 13 ~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~e~~~l~~~l~~~~~~~ 92 (188)
T Consensus 470 eL~~Gd~VVH~~HGIGrflgl~tl~~~g~~~dyL~l~Ya-~~dkLyVPVeql~lisrY~g~~~~~p--~L~kLG------ 540 (1139)
T COG1197 470 ELKPGDYVVHIDHGIGRFLGLETLEVGGIERDYLELEYA-GEDKLYVPVEQLHLISRYVGASDEAP--KLHKLG------ 540 (1139)
T ss_pred HCCCCCEEEECCCCCEEEEEEEEEECCCCCCCEEEEEEC-CCCEEEEEHHHHHHHHHCCCCCCCCC--CCCCCC------
T ss_conf 378898477515771344204898618876314899976-99738977778567764468998877--542347------
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 65503899999998516899999999999984101000001268999999999997746774899899999999985046
Q gi|254780417|r 93 RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172 (188)
Q Consensus 93 ~~~~~~R~~~~~~~lksgd~~~~a~vik~L~~~~~~k~l~~~e~~~l~~A~~~L~~Efa~~l~i~~eea~~~I~~~L~~~ 172 (188)
T Consensus 541 ~~~W~k~K----~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~---q~~F~~~FPyeET~DQl~AI~eVk~DM~~~ 613 (1139)
T COG1197 541 GGAWKKAK----AKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEW---QEEFEASFPYEETPDQLKAIEEVKRDMESG 613 (1139)
T ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 47789999----99999999999999999998730568787998589---999985499857878999999999886069
Q ss_pred CC
Q ss_conf 75
Q gi|254780417|r 173 SS 174 (188)
Q Consensus 173 ~~ 174 (188)
T Consensus 614 kp 615 (1139)
T COG1197 614 KP 615 (1139)
T ss_pred CC
T ss_conf 86