HHsearch alignment for GI: 254780417 and conserved domain: COG1329
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=100.00 E-value=2.4e-37 Score=260.44 Aligned_cols=164 Identities=49% Similarity=0.780 Sum_probs=160.5
Q ss_pred HHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 53138998697487850999767898648730253022024888569980520121045433441024678985078664
Q gi|254780417|r 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKAR 90 (188)
Q Consensus 11 ~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~e~~~l~~~l~~~~~ 90 (188)
T Consensus 2 ~~~FkiGd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~VP~~ka~~~GlR~v~~~~~l~~~~~vlq~~~~ 81 (166)
T COG1329 2 QMAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMVPVAKADSVGLRPVVDQEELDRALQVLQGGER 81 (166)
T ss_pred CCCCCCCCEEEECCCCCEEEEHHHHHHHCCCEEEEEEEEECCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 86342799888358766530056677625852489999973788289856451554277333236779999999844675
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 46655038999999985168999999999999841010000012689999999999977467748998999999999850
Q gi|254780417|r 91 VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170 (188)
Q Consensus 91 ~~~~~~~~R~~~~~~~lksgd~~~~a~vik~L~~~~~~k~l~~~e~~~l~~A~~~L~~Efa~~l~i~~eea~~~I~~~L~ 170 (188)
T Consensus 82 e~~~~ws~R~k~~~~klksGdi~~~AevvrdL~r~~~qr~l~~~Er~ll~~A~~~l~~Ela~~e~i~~~ea~~~l~~~l~ 161 (166)
T COG1329 82 EKPTMWSRRYKENEEKLKSGDIIDIAEVVRDLYRRDKQRELSYSERRLLEKALQILAGELALAEGISEEEAKTFLDEVLA 161 (166)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 56553789999888776147737899999999986405589968999999999999999999955999999999999755
Q ss_pred CCCC
Q ss_conf 4675
Q gi|254780417|r 171 SKSS 174 (188)
Q Consensus 171 ~~~~ 174 (188)
T Consensus 162 ~~~~ 165 (166)
T COG1329 162 SKSE 165 (166)
T ss_pred HHCC
T ss_conf 2127