Query gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 188 No_of_seqs 115 out of 1553 Neff 7.7 Searched_HMMs 33803 Date Wed Jun 1 12:44:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780417.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2eyq_A TRCF, transcription-re 99.5 3E-14 8.9E-19 111.5 6.1 66 10-76 17-82 (85) 2 >1dq3_A Endonuclease; PI-PFUI, 63.5 7.3 0.00022 19.0 3.2 48 11-59 115-162 (172) 3 >2vv5_A MSCS, small-conductanc 63.5 10 0.00031 18.0 4.7 41 11-61 17-57 (71) 4 >1vbv_A Hypothetical protein B 60.4 12 0.00035 17.6 5.7 78 11-88 3-97 (105) 5 >2wvr_C DNA replication factor 49.3 4.1 0.00012 20.6 0.0 57 66-122 483-539 (546) 6 >2rnz_A Histone acetyltransfer 48.2 18 0.00054 16.4 3.5 58 7-64 19-77 (94) 7 >1we3_O CPN10(groes); chaperon 40.1 22 0.00064 15.9 2.5 20 12-31 62-81 (100) 8 >1vq8_Q 50S ribosomal protein 38.8 21 0.00062 16.0 2.3 12 10-21 30-41 (96) 9 >2cp6_A Restin; microtubule bi 37.1 27 0.0008 15.3 3.5 58 8-68 33-109 (172) 10 >1vl2_A Argininosuccinate synt 32.6 17 0.0005 16.6 1.0 24 24-47 87-110 (202) 11 >1xne_A Hypothetical protein P 32.1 33 0.00097 14.8 3.4 29 7-35 28-56 (113) 12 >1kor_A Argininosuccinate synt 29.0 19 0.00056 16.3 0.7 25 23-47 82-106 (199) 13 >1k92_A Argininosuccinate synt 28.3 11 0.00032 17.9 -0.6 14 25-38 87-100 (203) 14 >1qor_A Quinone oxidoreductase 26.3 29 0.00086 15.1 1.3 15 20-34 59-73 (195) 15 >2ro0_A Histone acetyltransfer 24.2 45 0.0013 13.9 3.4 54 10-64 20-75 (92) 16 >1khc_A DNA cytosine-5 methylt 23.7 43 0.0013 14.0 1.8 55 9-63 7-65 (147) 17 >1zsy_A Mitochondrial 2-enoyl 23.5 36 0.0011 14.5 1.3 64 15-78 81-145 (202) 18 >1t9h_A YLOQ, probable GTPase 23.2 46 0.0014 13.8 1.8 19 15-33 52-72 (75) 19 >2wjn_H Reaction center protei 23.1 47 0.0014 13.8 6.4 77 17-95 41-119 (146) 20 >1pcq_O Groes protein; chapero 22.4 47 0.0014 13.8 1.8 21 13-33 58-78 (97) 21 >2dig_A Lamin-B receptor; tudo 21.4 51 0.0015 13.5 3.9 52 9-62 8-59 (68) 22 >2dq4_A L-threonine 3-dehydrog 20.8 42 0.0012 14.1 1.2 68 11-81 76-157 (172) 23 >3c2q_A Uncharacterized conser 20.2 54 0.0016 13.4 2.1 19 12-30 69-87 (100) No 1 >>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:460-544) Probab=99.50 E-value=3e-14 Score=111.49 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=58.9 Q ss_pred HHHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCH Q ss_conf 4531389986974878509997678986487302530220248885699805201210454334410 Q gi|254780417|r 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 (188) Q Consensus 10 ~~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~ 76 (188) ...+|++||+|||++||||+|.||++++++|..++||+|+|. +++++|||+++.+.+..+...+.. T Consensus 17 d~~~l~~GD~VVh~~hGig~~~gi~~~~~~g~~~ey~~l~y~-~~~~l~VPv~~~~~i~ry~~~~~~ 82 (85) T 2eyq_A 17 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLISRYAGGAEE 82 (85) T ss_dssp TCTTCCTTCEEEETTTEEEEEEEEEEEESSSCEEEEEEEECG-GGCEEEEEGGGGGGEEECCCSCSS T ss_pred CHHHCCCCCEEEEECCCHHHHCCEEEEECCCCCCCCEEEEEC-CCCEEEECHHHHHHHHHHHCCCCC T ss_conf 043246774686601230101030553026776763035642-796498348999888875024667 No 2 >>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} (A:1-132,A:415-454) Probab=63.53 E-value=7.3 Score=18.97 Aligned_cols=48 Identities=4% Similarity=0.106 Sum_probs=22.9 Q ss_pred HHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEE Q ss_conf 5313899869748785099976789864873025302202488856998 Q gi|254780417|r 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59 (188) Q Consensus 11 ~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~v 59 (188) ....++||+|+-+..+--.+.+|........+..+|.|.. .++.+.++ T Consensus 115 A~eL~~GD~I~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 162 (172) T 1dq3_A 115 ADELKEGDILIGGMPDGEGLEVVRHITTTNEPRTFYDLTV-ENYQNYLA 162 (172) T ss_dssp TTTCCTTCEECBCCCCCCHCEEEEEEEEECSCEEEEEEEE-TTTCEEEE T ss_pred HHHCCCCCEEEECCCCCCEEEEEEEEEEECCCCCEEEEEE-CCCCCEEE T ss_conf 8995877588642788757999999999768994698585-69876896 No 3 >>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} (A:111-181) Probab=63.50 E-value=10 Score=18.00 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=29.4 Q ss_pred HHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEEC Q ss_conf 531389986974878509997678986487302530220248885699805 Q gi|254780417|r 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 (188) Q Consensus 11 ~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv 61 (188) .+.|++||+|.-+++ .|+|++|.- -+-.|+- .++..+.+|- T Consensus 17 ~~~~~vGD~I~i~~~-~G~V~~i~l--------~~t~l~~-~dg~~v~iPN 57 (71) T 2vv5_A 17 FRPFRAGEYVDLGGV-AGTVLSVQI--------FSTTMRT-ADGKIIVIPN 57 (71) T ss_dssp TCSSCTTCEEESSSC-EEEEEEECS--------SEEEEEC-TTSCEEEEEH T ss_pred HCCCCCCCEEEEECC-EEEEEEEEE--------EEEEEEC-CCCCEEEEEE T ss_conf 056456658997044-278999102--------3676335-8993999980 No 4 >>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} (A:) Probab=60.41 E-value=12 Score=17.65 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=47.5 Q ss_pred HHHCCCCCEEECCCCC-CEEEEEEEEEEE-------------CCCCHHHEEEECCCCCCE---EEEECCCHHHCCCCCCC Q ss_conf 5313899869748785-099976789864-------------873025302202488856---99805201210454334 Q gi|254780417|r 11 RQGFRTGEHIVYPAHG-VGTITEIKEQEV-------------AGMKLEFFVIAFDKDKMC---LKVPVGKAIDIGMRKLS 73 (188) Q Consensus 11 ~~~FkvGD~VVy~~~G-Vg~i~~I~~~~i-------------~g~~~eyy~L~~~~~~~~---l~vPv~~~~~~~~R~~~ 73 (188) .-.|.+|+.|-|-.+| .|.|.|+....- .+..+-||.+-....+.. .||+-.+.....-...+ T Consensus 3 ~~kf~iGqvvrHr~~gYrGVI~gwDp~~~~~eew~~~~~~~~~~k~qPfY~vLv~~~~~~~~~~YVaeenL~~~~~~~~i 82 (105) T 1vbv_A 3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHP 82 (105) T ss_dssp CCSSCTTCEEEETTTCCEEEEEEEECC------------------CCCEEEEEEECSSCCEEEEEEEGGGEEECCCSCCT T ss_pred CCEECCCCEEEEEECCCCEEEEEEEEEEECCHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHCCCCCCCCCC T ss_conf 32513776899845186889972578982881898855235777789705899984898656888565557656679988 Q ss_pred CCHHHHHHHHHCCCC Q ss_conf 410246789850786 Q gi|254780417|r 74 EAHFVERALKLVRGK 88 (188) Q Consensus 74 ~~~e~~~l~~~l~~~ 88 (188) ....+.+++....+. T Consensus 83 ~hp~~~~~F~~f~~~ 97 (105) T 1vbv_A 83 EQPSMDELAQTIRKQ 97 (105) T ss_dssp TCHHHHHHHHHHTTC T ss_pred CCCCHHHHHHHHHCC T ss_conf 998989997665377 No 5 >>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:) Probab=49.26 E-value=4.1 Score=20.58 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=41.8 Q ss_pred HCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 104543344102467898507866446655038999999985168999999999999 Q gi|254780417|r 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122 (188) Q Consensus 66 ~~~~R~~~~~~e~~~l~~~l~~~~~~~~~~~~~R~~~~~~~lksgd~~~~a~vik~L 122 (188) ....|..++.+|+++.+++|.++..+|...-..+..++..+-+..|+..+.+.|..+ T Consensus 483 ~~s~~~~~~~~e~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (546) T 2wvr_C 483 VGSCCTIMSPGEMEKHLLLLSELLPDWLSLHRIRTDTYVKLDKAADLAHITARLAHQ 539 (546) T ss_dssp --------------------------------------------------------- T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHH T ss_conf 985457699999999999999868720699862794589960217999999999999 No 6 >>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} (A:) Probab=48.19 E-value=18 Score=16.39 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=41.6 Q ss_pred CHHHHHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECC-CCCCEEEEECCCH Q ss_conf 533453138998697487850999767898648730253022024-8885699805201 Q gi|254780417|r 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKA 64 (188) Q Consensus 7 ~~~~~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~-~~~~~l~vPv~~~ 64 (188) .+.....|.+|+.|.--.+|--.-..|......+...+||+=..- ....-=.||.+.+ T Consensus 19 ~~~~~~~~~vG~~v~~~~~~~~y~A~Il~~~~~~~~~~yyVHY~g~n~R~DeWV~~~ri 77 (94) T 2rnz_A 19 SHMSVDDIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRI 77 (94) T ss_dssp CSSCGGGCCTTEEEEEECSSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTB T ss_pred CEEECCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHC T ss_conf 60642344863499997199782668999997599868999807867554301176571 No 7 >>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} (O:) Probab=40.14 E-value=22 Score=15.95 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.2 Q ss_pred HHCCCCCEEECCCCCCEEEE Q ss_conf 31389986974878509997 Q gi|254780417|r 12 QGFRTGEHIVYPAHGVGTIT 31 (188) Q Consensus 12 ~~FkvGD~VVy~~~GVg~i~ 31 (188) -..++||.|+|+.++-..|. T Consensus 62 ~~vk~GD~Vlf~~~~g~ev~ 81 (100) T 1we3_O 62 LEVKEGDIVVFAKYGGTEIE 81 (100) T ss_dssp CSCCTTCEEEECTTCSEEEE T ss_pred CEEEECCEEEECCCCCCEEE T ss_conf 78874889998467872999 No 8 >>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (Q:) Probab=38.76 E-value=21 Score=16.00 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=9.5 Q ss_pred HHHHCCCCCEEE Q ss_conf 453138998697 Q gi|254780417|r 10 MRQGFRTGEHIV 21 (188) Q Consensus 10 ~~~~FkvGD~VV 21 (188) -.+.|++||+|. T Consensus 30 ~l~~fk~GD~Vd 41 (96) T 1vq8_Q 30 AVEEFDDGEKVH 41 (96) T ss_dssp HHCCCCTTCEEE T ss_pred HEEECCCCCEEE T ss_conf 226603898999 No 9 >>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=37.10 E-value=27 Score=15.30 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=34.1 Q ss_pred HHHHHHCCCCCEEECCCCCCEEEEEEEEEEEC-------------CCC------HHHEEEECCCCCCEEEEECCCHHHCC Q ss_conf 33453138998697487850999767898648-------------730------25302202488856998052012104 Q gi|254780417|r 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-------------GMK------LEFFVIAFDKDKMCLKVPVGKAIDIG 68 (188) Q Consensus 8 ~~~~~~FkvGD~VVy~~~GVg~i~~I~~~~i~-------------g~~------~eyy~L~~~~~~~~l~vPv~~~~~~~ 68 (188) +.....|++||.|.-.....|.|.=|....+. |+. ..|+... .+..+++|+.+...+. T Consensus 33 ~~~~~~l~vGdrV~v~~~~~G~vrfiG~~~~~~G~w~GVELd~p~GKndGsv~G~~YF~c~---~~~GiFv~~~~~~~~~ 109 (172) T 2cp6_A 33 KKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ---PKYGLFAPVHKVTKIG 109 (172) T ss_dssp CCCSSCCCSSCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCC---TTTEEEEEGGGCEECC T ss_pred HCCCCCCEECCEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCEECCEEEEECC---CCCEEEECHHHCEECC T ss_conf 0268786158989989997499998503699888789889478887779878999876549---9935884578867767 No 10 >>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} (A:184-385) Probab=32.59 E-value=17 Score=16.62 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=14.1 Q ss_pred CCCCEEEEEEEEEEECCCCHHHEE Q ss_conf 785099976789864873025302 Q gi|254780417|r 24 AHGVGTITEIKEQEVAGMKLEFFV 47 (188) Q Consensus 24 ~~GVg~i~~I~~~~i~g~~~eyy~ 47 (188) .||||++.-++++-++=+.++.|. T Consensus 87 ~~GiGr~d~vEnr~vG~KsR~vYE 110 (202) T 1vl2_A 87 KNGVGRLDMVENRFIGIKSRGVYE 110 (202) T ss_dssp HTTCCEEEEEEECSSSSEEEEEEE T ss_pred HHCCCCCCEECCCCCCCCCCCEEC T ss_conf 855775210155530122444122 No 11 >>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, PSI, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus dsm 3638} (A:) Probab=32.12 E-value=33 Score=14.79 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=23.8 Q ss_pred CHHHHHHCCCCCEEECCCCCCEEEEEEEE Q ss_conf 53345313899869748785099976789 Q gi|254780417|r 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKE 35 (188) Q Consensus 7 ~~~~~~~FkvGD~VVy~~~GVg~i~~I~~ 35 (188) .....+.+++||.|+.-+.=.++|.+|.. T Consensus 28 ~d~kr~~ik~GD~I~F~~~l~v~V~~i~~ 56 (113) T 1xne_A 28 AYPQLKDIKRGDKIIFNDLIPAEVVEVKK 56 (113) T ss_dssp CTTTTTTCCTTCEEEETTTEEEEEEEEEE T ss_pred CCHHHHHCCCCCEEEEECCEEEEEEEEEE T ss_conf 52678618999999993018999989998 No 12 >>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} (A:166-364) Probab=29.01 E-value=19 Score=16.33 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=16.3 Q ss_pred CCCCCEEEEEEEEEEECCCCHHHEE Q ss_conf 8785099976789864873025302 Q gi|254780417|r 23 PAHGVGTITEIKEQEVAGMKLEFFV 47 (188) Q Consensus 23 ~~~GVg~i~~I~~~~i~g~~~eyy~ 47 (188) +.||||++..++++-++=+.++.|. T Consensus 82 g~~GiGr~d~vEnr~iG~KsR~vYE 106 (199) T 1kor_A 82 GRHGVGRVDIVENRFVGMKSRGVYE 106 (199) T ss_dssp HHTTCCEEEEEEECTTSCEEEEEEE T ss_pred HHCCCCCCCCCCCCCCCCCCCCEEC T ss_conf 3402254330054322401064313 No 13 >>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} (A:184-386) Probab=28.31 E-value=11 Score=17.86 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=5.0 Q ss_pred CCCEEEEEEEEEEE Q ss_conf 85099976789864 Q gi|254780417|r 25 HGVGTITEIKEQEV 38 (188) Q Consensus 25 ~GVg~i~~I~~~~i 38 (188) ||||++.-++++-+ T Consensus 87 ~GvGr~d~vEnr~v 100 (203) T 1k92_A 87 HGLGMSDQIENRII 100 (203) T ss_dssp TTTTCEEEEEECTT T ss_pred CCCCCCCEECCCCC T ss_conf 04362010166011 No 14 >>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} (A:1-136,A:269-327) Probab=26.31 E-value=29 Score=15.11 Aligned_cols=15 Identities=7% Similarity=0.195 Sum_probs=8.8 Q ss_pred EECCCCCCEEEEEEE Q ss_conf 974878509997678 Q gi|254780417|r 20 IVYPAHGVGTITEIK 34 (188) Q Consensus 20 VVy~~~GVg~i~~I~ 34 (188) .|-+.-++|+|+.+. T Consensus 59 ~v~G~E~aG~V~~vG 73 (195) T 1qor_A 59 SGLGTEAAGIVSKVG 73 (195) T ss_dssp BCCCSCEEEEEEEEC T ss_pred CCCCEEEEEEEEECC T ss_conf 658568898872048 No 15 >>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} (A:) Probab=24.20 E-value=45 Score=13.90 Aligned_cols=54 Identities=7% Similarity=0.059 Sum_probs=36.2 Q ss_pred HHHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCC--CCCEEEEECCCH Q ss_conf 4531389986974878509997678986487302530220248--885699805201 Q gi|254780417|r 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK--DKMCLKVPVGKA 64 (188) Q Consensus 10 ~~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~--~~~~l~vPv~~~ 64 (188) ....|.+|+.|..-..|.-.-..|..........+||+ +|.+ ...--.||.++. T Consensus 20 ~~~~~~vG~~v~~~~~~~~y~A~I~~~~~~~~~~~y~V-HY~g~n~r~DEWV~~~ri 75 (92) T 2ro0_A 20 SVDDIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYV-HYVNYNKRLDEWITTDRI 75 (92) T ss_dssp CTTSCCTTCEEEEEETTEEEEEEEEEEECSSSSCEEEE-EETTSCTTSCEEEEGGGE T ss_pred CHHHEEECCEEEEEECCCEEEEEEEEEEECCCCCEEEE-EECCCCCCCCEEECHHHC T ss_conf 77786654799996199786668999898589868999-836867555415551031 No 16 >>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} (A:) Probab=23.67 E-value=43 Score=13.99 Aligned_cols=55 Identities=9% Similarity=-0.009 Sum_probs=37.0 Q ss_pred HHHHHCCCCCEEECCCCCCEEEEEEEEEE----ECCCCHHHEEEECCCCCCEEEEECCC Q ss_conf 34531389986974878509997678986----48730253022024888569980520 Q gi|254780417|r 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQE----VAGMKLEFFVIAFDKDKMCLKVPVGK 63 (188) Q Consensus 9 ~~~~~FkvGD~VVy~~~GVg~i~~I~~~~----i~g~~~eyy~L~~~~~~~~l~vPv~~ 63 (188) .....|.+||+|-=-..|=.=.=++.... -.......|.+.|++++....|+..+ T Consensus 7 ~~~~~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~ 65 (147) T 1khc_A 7 QDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADK 65 (147) T ss_dssp CSSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGG T ss_pred CCCCCCCCCCEEEEECCCCCCCCEEECCHHHHHCCCCCCCEEEEEECCCCCEEEECHHH T ss_conf 56876766878998578979899686365453111578983899981699778870888 No 17 >>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, fatty acid synthesis (type 2), structural genomics; 1.75A {Homo sapiens} PDB: 2vcy_A (A:1-149,A:305-357) Probab=23.53 E-value=36 Score=14.52 Aligned_cols=64 Identities=8% Similarity=-0.067 Sum_probs=28.9 Q ss_pred CCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEE-CCCCCCEEEEECCCHHHCCCCCCCCCHHH Q ss_conf 89986974878509997678986487302530220-24888569980520121045433441024 Q gi|254780417|r 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRKLSEAHFV 78 (188) Q Consensus 15 kvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~-~~~~~~~l~vPv~~~~~~~~R~~~~~~e~ 78 (188) .+..-.|-++-|+|+|..+...--.=...+..... ...+...-|+.++....+.+-.-++-.++ T Consensus 81 ~~~~P~v~G~E~vG~Vv~vG~~V~~lk~GD~V~~~~~~~G~~aey~vv~~~~l~~iP~~ls~~~A 145 (202) T 1zsy_A 81 LPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSA 145 (202) T ss_dssp CCCSSEECCSCCEEEEEEECTTCCSCCTTCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHH T ss_pred CCCCCEECCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 89998766343178996520222211112233432111234322222222222224631233300 No 18 >>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} (A:1-75) Probab=23.18 E-value=46 Score=13.84 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=7.5 Q ss_pred CCCCEEEC--CCCCCEEEEEE Q ss_conf 89986974--87850999767 Q gi|254780417|r 15 RTGEHIVY--PAHGVGTITEI 33 (188) Q Consensus 15 kvGD~VVy--~~~GVg~i~~I 33 (188) -+||+|.+ .+.|-|.|+.| T Consensus 52 ~VGD~V~~~~~~~~~G~I~~I 72 (75) T 1t9h_A 52 LVGDYVVYQAENDKEGYLMEI 72 (75) T ss_dssp CBTCEEEEECCTTSCEEEEEE T ss_pred CCCEEEEEEECCCCCEEEEEE T ss_conf 433699999779980799998 No 19 >>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H* (H:113-258) Probab=23.09 E-value=47 Score=13.76 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=42.7 Q ss_pred CCEEECCCCC--CEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 9869748785--09997678986487302530220248885699805201210454334410246789850786644665 Q gi|254780417|r 17 GEHIVYPAHG--VGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRT 94 (188) Q Consensus 17 GD~VVy~~~G--Vg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~e~~~l~~~l~~~~~~~~~ 94 (188) -.+=||...| ||+|..+---. ..-...|+++..-..+..+.||.+......-+.++..-..+.+ ..++......+. T Consensus 41 ~G~~V~~~~G~~iG~V~dv~~d~-~~g~v~~~Vv~~Ggf~k~v~vp~~~~~~~~~~~~~~~~t~~~i-~~aP~f~~~~~~ 118 (146) T 2wjn_H 41 RGLPVVAADGVEAGTVTDLWVDR-SEHYFRYLELSVAGSARTALIPLGFCDVKKDKIVVTSILSEQF-ANVPRLQSRDQI 118 (146) T ss_dssp TTCEEECTTSCEEEEEEEEEEET-TTTEEEEEEEEETTTTEEEEEEGGGCEECSSCEECCSSCGGGG-GGSCCCSSSSCC T ss_pred CCCEEECCCCCCCCEEEEEEEEC-CCCEEEEEEEEECCCCCEEECCHHHCEECCCEEEECCCCHHHH-HCCCCCCCCCCC T ss_conf 56734868998604576899978-9884899999938978317716789477688089812468887-269999988966 Q ss_pred C Q ss_conf 5 Q gi|254780417|r 95 M 95 (188) Q Consensus 95 ~ 95 (188) + T Consensus 119 ~ 119 (146) T 2wjn_H 119 T 119 (146) T ss_dssp B T ss_pred C T ss_conf 9 No 20 >>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} (O:) Probab=22.45 E-value=47 Score=13.75 Aligned_cols=21 Identities=10% Similarity=0.185 Sum_probs=15.3 Q ss_pred HCCCCCEEECCCCCCEEEEEE Q ss_conf 138998697487850999767 Q gi|254780417|r 13 GFRTGEHIVYPAHGVGTITEI 33 (188) Q Consensus 13 ~FkvGD~VVy~~~GVg~i~~I 33 (188) ..++||.|+|+.++-..++.. T Consensus 58 ~Vk~GD~Vl~~~~~G~ei~~~ 78 (97) T 1pcq_O 58 DVKVGDIVIFNDGYGVKSEKI 78 (97) T ss_dssp SCCTTCEEEECCCSSCEEEEE T ss_pred CCCCCCEEEECCCCCCCEEEE T ss_conf 169999999836558637978 No 21 >>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=21.42 E-value=51 Score=13.55 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=39.6 Q ss_pred HHHHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECC Q ss_conf 345313899869748785099976789864873025302202488856998052 Q gi|254780417|r 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 (188) Q Consensus 9 ~~~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~ 62 (188) +-.+.|..||.|.-.=-|--.|-+++...+.+..+.| .+.| .++..+=++.. T Consensus 8 MP~~kf~~Ge~VmgRWPGSsLyYev~Vls~d~~sqlY-tV~Y-KDGTeleLke~ 59 (68) T 2dig_A 8 MPSRKFADGEVVRGRWPGSSLYYEVEILSHDSTSQLY-TVKY-KDGTELELKEN 59 (68) T ss_dssp SCCCSSCSSCEEEEECTTTCCEEEEEEEEEETTTTEE-EEEC-TTSCEEEEETT T ss_pred CCCEECCCCCEEEEECCCCCEEEEEEEEEECCCCCEE-EEEE-CCCCEEECCCC T ss_conf 9850024785877206998348999997505864069-9995-47861102302 No 22 >>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* (A:1-138,A:310-343) Probab=20.80 E-value=42 Score=14.08 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=30.5 Q ss_pred HHHCCCCCEEECCCCCC--------------EEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCH Q ss_conf 53138998697487850--------------9997678986487302530220248885699805201210454334410 Q gi|254780417|r 11 RQGFRTGEHIVYPAHGV--------------GTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76 (188) Q Consensus 11 ~~~FkvGD~VVy~~~GV--------------g~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~ 76 (188) -..|++||.|+-....- |.=..+--....|.-.+|.++.- +..+-+|-++--..+.-++.... T Consensus 76 v~~~k~GdrV~v~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~GgfAEy~~vp~---~~v~~iPe~~~~~~~~~~~~~~~ 152 (172) T 2dq4_A 76 VRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPA---ENAWVNPKDSPLLTHRLPLSRYR 152 (172) T ss_dssp CCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEG---GGEEEECTTGGGEEEEEEGGGHH T ss_pred CCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEEHHHHH T ss_conf 410011333664143122232100022322111232000245675320121110---22346886545487898599999 Q ss_pred HHHHH Q ss_conf 24678 Q gi|254780417|r 77 FVERA 81 (188) Q Consensus 77 e~~~l 81 (188) ++-.+ T Consensus 153 ~~~~~ 157 (172) T 2dq4_A 153 EAFGL 157 (172) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 23 >>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2} (A:1-100) Probab=20.22 E-value=54 Score=13.39 Aligned_cols=19 Identities=11% Similarity=0.426 Sum_probs=11.3 Q ss_pred HHCCCCCEEECCCCCCEEE Q ss_conf 3138998697487850999 Q gi|254780417|r 12 QGFRTGEHIVYPAHGVGTI 30 (188) Q Consensus 12 ~~FkvGD~VVy~~~GVg~i 30 (188) ...+.||.||-+..||-.+ T Consensus 69 r~lk~GD~VVvG~~GI~v~ 87 (100) T 3c2q_A 69 RKVKKGDFVLIGHNGIRVX 87 (100) T ss_dssp GGCCTTCEEEESSSSEEEC T ss_pred CCCCCCCEEEECCCEEEEC T ss_conf 3147799799868715978 Done!