HHsearch results for GI: 254780417 and protein with PDBid: 2eyq_A
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.82 E-value=5.3e-20 Score=147.53 Aligned_cols=148 Identities=16% Similarity=0.237 Sum_probs=108.9
Q ss_pred HHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 31389986974878509997678986487302530220248885699805201210454334410246789850786644
Q gi|254780417|r 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARV 91 (188)
Q Consensus 12 ~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~e~~~l~~~l~~~~~~ 91 (188)
..+++||||||.+||||+|.|++++++.|..+||+.|+|. +++++|||+++.+.+..|...+.... - ....
T Consensus 478 ~~L~~GDyVVH~dHGIGrY~GL~~i~v~g~~~DyL~IeYa-~~dkLyVPv~ql~lIskY~g~~~~~p--~------LdkL 548 (1151)
T 2eyq_A 478 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLISRYAGGAEENA--P------LHKL 548 (1151)
T ss_dssp TTCCTTCEEEETTTEEEEEEEEEEEESSSCEEEEEEEECG-GGCEEEEEGGGGGGEEECCCSCSSSC--C------CCCT
T ss_pred HHCCCCCHHHHCCCCEEEEECCEEECCCCCCCCEEEEEEC-CCCEEEECHHHHHHHHHCCCCCCCCC--C------CCCC
T ss_conf 2067887113206764897132574036875552699975-89769746899877764037788887--1------6757
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 66550389999999851689999999999998410100000126899999999999774677489989999999998504
Q gi|254780417|r 92 KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 (188)
Q Consensus 92 ~~~~~~~R~~~~~~~lksgd~~~~a~vik~L~~~~~~k~l~~~e~~~l~~A~~~L~~Efa~~l~i~~eea~~~I~~~L~~ 171 (188)
....|.++...-++.+ ..-+.++++-...|...++.++....- .++.|.+.|+|.+|.+|..|++.|..+|.+
T Consensus 549 G~~~W~k~K~kakk~i----~~iA~eLl~lyA~R~~~~~~~~~~~~~---~~~~~~~~~~~~~t~~q~~a~~~i~~~~~~ 621 (1151)
T 2eyq_A 549 GGDAWSRARQKAAEKV----RDVAAELLDIYAQRAAKEGFAFKHDRE---QYQLFCDSFPFETTPDQAQAINAVLSDMCQ 621 (1151)
T ss_dssp TCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSCCCCCCCCHH---HHHHHHHTCCSCCCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 8168999999999999----999999999999975203753045334---689999747766787799999999887606
Q ss_pred CCCC
Q ss_conf 6753
Q gi|254780417|r 172 KSSK 175 (188)
Q Consensus 172 ~~~~ 175 (188)
+.|.
T Consensus 622 ~~~~ 625 (1151)
T 2eyq_A 622 PLAM 625 (1151)
T ss_dssp SSCC
T ss_pred CCHH
T ss_conf 8556