HHsearch results for GI: 254780417 and protein with PDBid: 2eyq_A

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.82  E-value=5.3e-20  Score=147.53  Aligned_cols=148  Identities=16%  Similarity=0.237  Sum_probs=108.9

Q ss_pred             HHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             31389986974878509997678986487302530220248885699805201210454334410246789850786644
Q gi|254780417|r   12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARV   91 (188)
Q Consensus        12 ~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~e~~~l~~~l~~~~~~   91 (188)
                      ..+++||||||.+||||+|.|++++++.|..+||+.|+|. +++++|||+++.+.+..|...+....  -      ....
T Consensus       478 ~~L~~GDyVVH~dHGIGrY~GL~~i~v~g~~~DyL~IeYa-~~dkLyVPv~ql~lIskY~g~~~~~p--~------LdkL  548 (1151)
T 2eyq_A          478 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLISRYAGGAEENA--P------LHKL  548 (1151)
T ss_dssp             TTCCTTCEEEETTTEEEEEEEEEEEESSSCEEEEEEEECG-GGCEEEEEGGGGGGEEECCCSCSSSC--C------CCCT
T ss_pred             HHCCCCCHHHHCCCCEEEEECCEEECCCCCCCCEEEEEEC-CCCEEEECHHHHHHHHHCCCCCCCCC--C------CCCC
T ss_conf             2067887113206764897132574036875552699975-89769746899877764037788887--1------6757


Q ss_pred             CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             66550389999999851689999999999998410100000126899999999999774677489989999999998504
Q gi|254780417|r   92 KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS  171 (188)
Q Consensus        92 ~~~~~~~R~~~~~~~lksgd~~~~a~vik~L~~~~~~k~l~~~e~~~l~~A~~~L~~Efa~~l~i~~eea~~~I~~~L~~  171 (188)
                      ....|.++...-++.+    ..-+.++++-...|...++.++....-   .++.|.+.|+|.+|.+|..|++.|..+|.+
T Consensus       549 G~~~W~k~K~kakk~i----~~iA~eLl~lyA~R~~~~~~~~~~~~~---~~~~~~~~~~~~~t~~q~~a~~~i~~~~~~  621 (1151)
T 2eyq_A          549 GGDAWSRARQKAAEKV----RDVAAELLDIYAQRAAKEGFAFKHDRE---QYQLFCDSFPFETTPDQAQAINAVLSDMCQ  621 (1151)
T ss_dssp             TCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSCCCCCCCCHH---HHHHHHHTCCSCCCHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             8168999999999999----999999999999975203753045334---689999747766787799999999887606


Q ss_pred             CCCC
Q ss_conf             6753
Q gi|254780417|r  172 KSSK  175 (188)
Q Consensus       172 ~~~~  175 (188)
                      +.|.
T Consensus       622 ~~~~  625 (1151)
T 2eyq_A          622 PLAM  625 (1151)
T ss_dssp             SSCC
T ss_pred             CCHH
T ss_conf             8556