HHSEARCH alignment of GI: 254780417 and SCOP domain: d2eyqa3

Alignment
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=92.74  E-value=0.074  Score=29.29  Aligned_cols=75  Identities=13%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             55038999999985168999999999999841010000012689999999999977467748998999999999850467
Q gi|254780417|r   94 TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS  173 (188)
Q Consensus        94 ~~~~~R~~~~~~~lksgd~~~~a~vik~L~~~~~~k~l~~~e~~~l~~A~~~L~~Efa~~l~i~~eea~~~I~~~L~~~~  173 (188)
                      ..|.++.+.-++.++    .-..++++....|...+...+.-.   ......+.+.|+|.++.+|..|.+.|.++|.++.
T Consensus         3 ~~W~k~K~Kakk~i~----~lA~eLL~i~akR~~~kg~~~~~~---~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~   75 (233)
T d2eyqa3           3 DAWSRARQKAAEKVR----DVAAELLDIYAQRAAKEGFAFKHD---REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPL   75 (233)
T ss_dssp             SHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTSCCCCCCCC---HHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             779999999999999----999999999999822669887998---7999766640011346048889999999985457


Q ss_pred             CC
Q ss_conf             53
Q gi|254780417|r  174 SK  175 (188)
Q Consensus       174 ~~  175 (188)
                      |.
T Consensus        76 ~~   77 (233)
T d2eyqa3          76 AM   77 (233)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             66


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]